BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780526|ref|YP_003064939.1| putative transcription
regulator protein [Candidatus Liberibacter asiaticus str. psy62]
         (223 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  LV++        +G ++E     E       S   D+  ++  L    +   
Sbjct: 5   ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIML--PKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S  P+I ++        +   D G DD V KP    E++ARV A+ RR  +
Sbjct: 63  TVCREIRAMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSL 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N                D    EV G    L  +E  +L +L ++ GK  ++ Q+ S +
Sbjct: 123 ANQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +   V++HI +LR+KL + +    + +    GY  + 
Sbjct: 183 WD-YDYLGDPRTVDTHIKRLREKLESGVKQRYIRTVWGRGYKFEV 226


>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 228

 Score =  175 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  LV+D        +G  +E     E        A  D+  ++  L        
Sbjct: 6   ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIML--PKMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            + R IR     P+I ++        +   + G DD V KP    E    +  V    R 
Sbjct: 64  AVCREIRKTMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARG 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S        + V   G   EV G    L  +E  +L +L ++ G+  ++ Q+   ++
Sbjct: 124 GRDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   V++HI +LR+KL        + +    GY  + 
Sbjct: 184 -AYDYLGDTRTVDTHIKRLREKLEAGSEKRYIRTVWGRGYKFEV 226


>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 231

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +           +  +   D+  ++  L   G   L
Sbjct: 4   ILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIML--PGMDGL 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +        +P+I +S        +   + G DD + KP   RE++ARV A  RR
Sbjct: 62  SVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRR 121

Query: 119 LKVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               N   ETG I      +  D     V G    L  +E  +L YL  + GK  ++  +
Sbjct: 122 QTTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              I+G ++   +   V+ HI  +R+KL         +++ R +GY  
Sbjct: 182 LEQIWG-YEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRF 228


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 88/227 (38%), Gaps = 8/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++        +G ++      E       S    +  ++  L       
Sbjct: 5   LILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLML--PKLDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115
            ++ R +R  S+VP+I ++        +   + G DD + KP   RE           A 
Sbjct: 63  WDVCREVRKFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRAT 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +      + +    R+  V      L  +E  +L +L  + GK   + Q+ +
Sbjct: 123 PEEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           A++G +D   +   V++HI +LR+K+        V +   +GY  + 
Sbjct: 183 AVWG-YDYYGDLRTVDTHIKRLREKVERDGNTPHVKTIWGVGYKFEV 228


>gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51]
 gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 263

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           + +++DD   +++        +G  +           +    + ++  ++  L G  G +
Sbjct: 39  VILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLE 98

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL   R      ++P+I ++        +   + G DD + KP   RE++AR+ A  RRL
Sbjct: 99  VLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRL 158

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K S    +     + +  D     V+GE   L  +E  +L  L    GK   + ++   I
Sbjct: 159 KPSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERI 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++ A +   V+ H+  LR+K+  +    + +++ R +GY +
Sbjct: 219 WG-YEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRL 261


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +   N  E      ++ + D+  ++          L
Sbjct: 6   ILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVM--MPRMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 64  EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +   +E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++ G  + E           D   ++  L   G    
Sbjct: 6   ILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVML--PGMSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S VP++ +S        +     G DD V KP    E++ARV A+ RR + 
Sbjct: 64  EACRAIRAFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S  +   GP+ +   G      G    +  +E  +L +L  + G+  ++ Q++  ++G  
Sbjct: 124 SAEQWRFGPLTIDPKGYRVWRDGREVAMTAKELELLIFLARHPGQVFSREQLYDRVWG-- 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  +   V  HI+++R+K+  +      + + R LGY  
Sbjct: 182 -DFGDPRTVTVHINRIREKIEADPSRPQFIQTVRGLGYRF 220


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +   N  E      ++ + D+  ++          L
Sbjct: 6   ILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVM--MPRMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 64  EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
          Length = 232

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G +++     E           D+  ++  L       L
Sbjct: 4   ILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLML--PRLDGL 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           EL R +R+ +     P++ ++        +   + G DD + KP   RE++AR+      
Sbjct: 62  ELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R         + G + + +D  +  V G    +  +E  +L +L ++ GK   +  + 
Sbjct: 122 ATRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G +D   +   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 182 EKIWG-YDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKF 227


>gi|229114656|ref|ZP_04244070.1| Response regulator [Bacillus cereus Rock1-3]
 gi|228668721|gb|EEL24149.1| Response regulator [Bacillus cereus Rock1-3]
          Length = 234

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLIEQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229095705|ref|ZP_04226685.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228687738|gb|EEL41636.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 234

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E      +  + D+  ++          L
Sbjct: 6   ILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVM--MPKMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R IR     P++ ++        +   + G DD + KP   +E++        R   
Sbjct: 64  EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +      E       S   D+  ++  L        
Sbjct: 10  ILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIML--PKIDGW 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R IR  S VP++ ++        +   + G DD + KP   RE++ARV       R+
Sbjct: 68  EVCREIRKISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   G + +  + R   V G+   L  +E  +L  L  + GK   + ++   ++
Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V++H+++LR+KL        + +   +GY ++ 
Sbjct: 188 G-YDFYGDSRTVDTHVARLREKLNQAGAPPLIATVWGVGYKLEV 230


>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
 gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        DG ++   N  E      ++   D+  ++           
Sbjct: 6   ILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIM--MPKLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I I+        +   + G DD V KP   +EI+ARV AI RR   
Sbjct: 64  QVCREIRKKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRASK 123

Query: 122 SNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+   +   +            + +V G V   P +E  +L +L +N  +   + Q+   
Sbjct: 124 SSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPNRVYTRDQLLDE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G F+   +   V+ HI +LR+KL        + +   +GY  + 
Sbjct: 184 VWG-FEYYGDSRTVDVHIKRLREKLEGVSDQWTLKTVWGVGYKFEV 228


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   +  E      ++ + D   ++  L   G    
Sbjct: 6   ILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVML--PGLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD V KP   +EI+AR+ AI+RRL  
Sbjct: 64  QVCREIRKKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQ 123

Query: 122 SNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN +AE   +            + +V G+V   P +E  +L +L +   +   + Q+   
Sbjct: 124 SNQQAEVKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G F+   +   ++ H+ +LR+KL        + +   +GY  + N
Sbjct: 184 VWG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEVN 229


>gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 234

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E      +  + D+  ++          L
Sbjct: 6   ILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVM--MPRMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R IR     P++ ++        +   + G DD + KP   +E++        R   
Sbjct: 64  EVCRRIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTV 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + + S    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   +  +    L    + D+  ++  L   G   L
Sbjct: 6   ILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIML--PGIDGL 63

Query: 62  ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           E+    R  RA   +P+I ++        +   + G DD + KP   RE++ARV      
Sbjct: 64  EVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +++ S+   + GPI +  +  +  V+GE      +E  +L  L +N GK  ++  +  
Sbjct: 124 ADKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            I+G +D   +   V+ HI  LR+K+         +++ R +GY  + 
Sbjct: 184 NIWG-YDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFNE 230


>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 229

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +        G +G  +   +S E        +  D+  ++      G    
Sbjct: 5   ILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLM--MPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E  + ++A  +VP+I +S        +  F  GVDD   KP         + A +  +  
Sbjct: 63  ETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  + G + +    R   V      L  ++  +L  + +N  +   K  +   I
Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +       ++N V  HI +LR+K+  +    + + +   +GY  ++
Sbjct: 183 WDSS-FYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEY 227


>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V          +G +++  +S E    +      D+  ++      G   L
Sbjct: 74  ILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIM--MPGMDGL 131

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R A  ++P++ ++   +    +   ++G DD V KP     ++ARV A+ RR +
Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQ 191

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +        + +             L   E ++L   M +  + + K Q+   ++G
Sbjct: 192 AERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWG 251

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV+E ++ +LR+KL  +     + + R +GY +
Sbjct: 252 -YDFGGNANVLEVYVKQLRQKLEAEGEPRLIHTVRGVGYVL 291


>gi|206968610|ref|ZP_03229566.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737530|gb|EDZ54677.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 234

 Score =  171 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|52144209|ref|YP_082619.1| response regulator [Bacillus cereus E33L]
 gi|196036495|ref|ZP_03103891.1| DNA-binding response regulator [Bacillus cereus W]
 gi|228944829|ref|ZP_04107192.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|51977678|gb|AAU19228.1| response regulator [Bacillus cereus E33L]
 gi|195990969|gb|EDX54941.1| DNA-binding response regulator [Bacillus cereus W]
 gi|228814857|gb|EEM61115.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  171 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGCVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|30019274|ref|NP_830905.1| two-component response regulator yvrH [Bacillus cereus ATCC 14579]
 gi|229078408|ref|ZP_04210970.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|296501821|ref|YP_003663521.1| two-component response regulator yvrH [Bacillus thuringiensis
           BMB171]
 gi|29894817|gb|AAP08106.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579]
 gi|228704901|gb|EEL57325.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|296322873|gb|ADH05801.1| two-component response regulator yvrH [Bacillus thuringiensis
           BMB171]
          Length = 234

 Score =  171 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|228984288|ref|ZP_04144469.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775405|gb|EEM23790.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 234

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L +  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRKHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|228951584|ref|ZP_04113689.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229149424|ref|ZP_04277660.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634066|gb|EEK90659.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228808149|gb|EEM54663.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 234

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|229171861|ref|ZP_04299431.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228611633|gb|EEK68885.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 234

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L +    D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTAQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQTTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHI 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   N +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQAVPHEQKANFSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229154782|ref|ZP_04282897.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628730|gb|EEK85442.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 234

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|47567578|ref|ZP_00238289.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47555773|gb|EAL14113.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 234

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229068774|ref|ZP_04202071.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177635|ref|ZP_04305012.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605825|gb|EEK63269.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714391|gb|EEL66269.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 236

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|229016415|ref|ZP_04173357.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022644|ref|ZP_04179169.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738653|gb|EEL89124.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744823|gb|EEL94883.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILKKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +   R   
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +    G   +     +  V G V     +  ++L +   N     +K +I+
Sbjct: 124 QQSVQEQKTHSISFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|228957490|ref|ZP_04119243.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108678|ref|ZP_04238289.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126530|ref|ZP_04255544.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143826|ref|ZP_04272245.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639587|gb|EEK95998.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228656919|gb|EEL12743.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674819|gb|EEL30052.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802180|gb|EEM49044.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 234

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEINQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|218896157|ref|YP_002444568.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218545429|gb|ACK97823.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 234

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +    + +    +  S   D+  ++  L   G+  L
Sbjct: 4   ILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIML--PGQDGL 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +        +P+I +S        +   + G DD + KP   RE++AR+ A  RR
Sbjct: 62  SVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRR 121

Query: 119 LKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             V N       R   G + +  D       G    L  +E  +L YL  N GK   +  
Sbjct: 122 QTVENQVLEDAGRITVGKLVIDQDRFVVSYNGIKQDLTPKEFELLRYLARNPGKVFTRDF 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   I+G +D + +   V+ HI  +R+KL         +++ R +GY  
Sbjct: 182 LLEQIWG-YDFSGDSRTVDVHIRHIRQKLEQLPDAPQFIETVRGVGYRF 229


>gi|229195420|ref|ZP_04322188.1| Response regulator [Bacillus cereus m1293]
 gi|228587960|gb|EEK46010.1| Response regulator [Bacillus cereus m1293]
          Length = 234

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G  ++     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFKIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|217958697|ref|YP_002337245.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137906|ref|ZP_04266505.1| Response regulator [Bacillus cereus BDRD-ST26]
 gi|217067863|gb|ACJ82113.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228645563|gb|EEL01796.1| Response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|228919942|ref|ZP_04083297.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839758|gb|EEM85044.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|301052758|ref|YP_003790969.1| response regulator [Bacillus anthracis CI]
 gi|300374927|gb|ADK03831.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 234

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQAVSNEQKAHSSSFGRFEIDRYSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|49477096|ref|YP_035355.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196037687|ref|ZP_03104998.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218902316|ref|YP_002450150.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228926259|ref|ZP_04089333.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120744|ref|ZP_04249987.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|254725504|ref|ZP_05187286.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|49328652|gb|AAT59298.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196031929|gb|EDX70525.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218536850|gb|ACK89248.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228662749|gb|EEL18346.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833356|gb|EEM78919.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +++        +G  +    + +    +    +  +  ++  L    G  V
Sbjct: 6   ILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQMDGYDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +  R   + S  P+I I+        +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 66  CKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRTL 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +    +   +++  +  +    GE   L  +E ++LE L+ N+G+ + +  +   I+
Sbjct: 126 LKSTEEPFKFEGLKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           G ++   E   V+ HI  LR+K+  +      +++ R +GY  + N
Sbjct: 186 G-YEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGYRFNLN 230


>gi|228964165|ref|ZP_04125288.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795515|gb|EEM42999.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQAVPHEQNSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|218234767|ref|YP_002365906.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162724|gb|ACK62716.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTIPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E    +  S   ++  ++  L    +   
Sbjct: 5   ILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVML--PKQDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R     P+I ++        +   + G DD V KP   RE++AR+ A  RRL +
Sbjct: 63  QVCKKLREKLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN   E        + +         +G    L  RE  +L++L A  G+  ++ ++   
Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           ++G ++   +   V+  I +LR+K+ +       + +KR +GY  + N
Sbjct: 183 VWG-YEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229


>gi|75761429|ref|ZP_00741398.1| Two-component response regulator yvrH [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228899799|ref|ZP_04064045.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906846|ref|ZP_04070715.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74491087|gb|EAO54334.1| Two-component response regulator yvrH [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228852850|gb|EEM97635.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228859818|gb|EEN04232.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 236

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|324325234|gb|ADY20494.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|118476709|ref|YP_893860.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196044305|ref|ZP_03111541.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|229183424|ref|ZP_04310649.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118415934|gb|ABK84353.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196024944|gb|EDX63615.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|228600008|gb|EEK57603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   +    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTADLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|228913796|ref|ZP_04077421.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228932498|ref|ZP_04095379.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827188|gb|EEM72941.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228845735|gb|EEM90761.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|225863073|ref|YP_002748451.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225785922|gb|ACO26139.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEKKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|222094843|ref|YP_002528903.1| response regulator [Bacillus cereus Q1]
 gi|221238901|gb|ACM11611.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++D        +G  ++  +       L  +   D+  ++  L   G   L
Sbjct: 4   ILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLML--PGVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  SQVP+I ++        +   + G DD + KP   RE++ARV A+ RR+  
Sbjct: 62  TICKEIRKFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             +  + R   V+G+   L  RE  +L +L +  G+  ++ Q+ 
Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + ++G +D   +   V++HI++LR KL       P+ +   +GY  + 
Sbjct: 182 TNVWG-YDYFGDLRTVDTHINRLRDKLSVNGARQPIATVWGVGYKFEV 228


>gi|206976559|ref|ZP_03237465.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206745242|gb|EDZ56643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 234

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +        +G  +    +        +S + D+  ++          L
Sbjct: 4   ILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLM--MPEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ R IR HS+VP+I ++        +   + G DD + KP + RE++AR+       + 
Sbjct: 62  EVCRQIRMHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      +   + +       ++QG   P   +E  +L  L +N G+   + Q+  
Sbjct: 122 ISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDW 222
            ++G +D   +   V++HI ++RKK+ +        + +   +GY  + 
Sbjct: 182 KVWG-YDYFGDSRTVDTHIKRIRKKIGSAEESTSFDIKTVWGVGYKFEV 229


>gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 234

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + + +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229028889|ref|ZP_04184990.1| Response regulator [Bacillus cereus AH1271]
 gi|228732460|gb|EEL83341.1| Response regulator [Bacillus cereus AH1271]
          Length = 234

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEKNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSQGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQAVPNEQKAHSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +      +    +   A  D+  ++  L    G +V
Sbjct: 6   ILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
               +    +  +P+I ++       T+   + G DD + KP   RE++ARV A      
Sbjct: 66  CRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRALR 125

Query: 116 --YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +         + V  +  +  +  E   L  +E  +L  + +N+GK   +  +
Sbjct: 126 ILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTREVL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G ++ + +   V+ HI  LR+KL +     D +++ R +GY  
Sbjct: 186 LEKVWG-YEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGYRF 232


>gi|229101805|ref|ZP_04232520.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681598|gb|EEL35760.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 234

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L    +  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PEQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
           sensing [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   ++ E    +      D+  ++  L   G    
Sbjct: 8   ILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVML--PGIDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R HS++P++ ++        +  F+ G DD V KP   RE+  RV AI RR + 
Sbjct: 66  EVLRALRRHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    +       P+ +     +    G    L   E +IL  L  + G+   + ++   
Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + G  D   +   V+ HI  LR KL         +++ R +GY  
Sbjct: 186 VMG-PDFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGYRF 229


>gi|229090161|ref|ZP_04221411.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693238|gb|EEL46949.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVIPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEQVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 234

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +  D  +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
 gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
          Length = 345

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 17  LVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLML--PGMDGLE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  + VP++ ++     +  +   + G DD V KP   RE++ RVA++ RR    
Sbjct: 75  VCRRLRERAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRRTGPD 134

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              A     R  V    R     GE   L  RE  +L + + + G+   + ++   ++G 
Sbjct: 135 AVSAPVRLGRLAVDPAARLATRDGEALSLTLREFDLLAFFLRHPGRAFGREELMREVWGW 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 195 --EFGDLSTVTVHIRRLRGKIEDDPAAPRAIRTVWGVGYRFE 234


>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E      +  + D+  ++          L
Sbjct: 6   ILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVM--MPKMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R IR     P++ ++        +   + G DD + KP   +E++        R   
Sbjct: 64  EVCRRIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTT 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + + +    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TTAQTESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  +    L      ++  ++  L        
Sbjct: 6   IMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIML--PQLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ R IR  SQVP+I ++    +   +   + G DD + KP   +E++AR+        +
Sbjct: 64  QVCREIRKKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +     + +V G     P +E  ++ +L +N  +   + Q+   +
Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G FD   +   V+ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 WG-FDYYGDSRTVDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 227


>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 238

 Score =  168 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   + E    L      D+  ++      G   +
Sbjct: 7   ILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIM--MPGMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + +R     P++ ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCQELRKTKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +    + +      + + +D     V G+   L  +E  +L YL  +  K  ++ Q
Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  +D   +   V++HI +LR+KL   +      + +   +GY  +
Sbjct: 185 LLKDVW-NYDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGYKFE 234


>gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  168 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           + +++DD   +++        +G  +           +    + ++  ++  L G  G +
Sbjct: 3   VILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL   R      ++P+I ++        +   + G DD + KP   RE++AR+ A  RRL
Sbjct: 63  VLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRL 122

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K S    +     + +  D     V+GE   L  +E  +L  L    GK   + ++   I
Sbjct: 123 KPSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++ A +   V+ H+  LR+K+  +    + +++ R +GY +
Sbjct: 183 WG-YEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRL 225


>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 251

 Score =  168 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++   + +        A  D+  ++      G   +
Sbjct: 20  ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 78  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 137

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +     + N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 138 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 198 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 248


>gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 277

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++            ++ R D+  ++  L   G   L
Sbjct: 22  ILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLML--PGMDGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  VP++ ++        +   + G DD V KP   RE++ RV ++ RR + 
Sbjct: 80  EVCRRLRENGPVPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRARP 139

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +    R     G    L  RE  +L +L+A+  K   + ++   ++G
Sbjct: 140 GPGIRPLHAAGLVLDPAARRATKNGAELALTLREFDLLAFLLAHPRKVFGREELMREVWG 199

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                 + + V  H+ +LR K+ +       + +   +GY  +
Sbjct: 200 WD--FGDLSTVTVHVRRLRGKVEDDPARPLLIQTVWGVGYRFE 240


>gi|229056843|ref|ZP_04196242.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720493|gb|EEL72062.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +   R   
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +        G   +     +  V G V     +  ++L +   N     +K +++
Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A    DG ++      E    L  + + D+  ++  L   G   L
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLL--PGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EICRRLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++  +           +++    R+ + +G    L  RE  +L  L A  G+   + Q+ 
Sbjct: 123 TSVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D    + VV+ HIS LR+KL +       + + R +GY  
Sbjct: 183 ERVWG-HDFDGVDRVVDVHISLLRRKLEDDPTEPTLIQTVRGVGYKF 228


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        ++G  +E     E       +   D+  ++          + 
Sbjct: 7   LVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVM--MPKMDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + IR  S+VP+I ++        +   + G DD + KP   RE++AR+ A+ RR    
Sbjct: 65  VCQEIRRVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGTE 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K   +  +   +R+    R+ +V+ +   L  +E  +L  L    G+  ++ Q+   ++
Sbjct: 125 SKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V++H+++LR KLR     + + +   +GY  + 
Sbjct: 185 G-FDYYGDVRTVDTHVNRLRDKLRAAGAPNFIKTVWGVGYKFEV 227


>gi|163939018|ref|YP_001643902.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861215|gb|ABY42274.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            ++  I+R  +  P+  ++   S    +  F  G DD + KP +        +   R   
Sbjct: 64  FDICPILRQKTDCPIFFLTAKTSDVDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +        G   +     +  V G V     +  ++L +   N     +K +++
Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|228996291|ref|ZP_04155936.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003958|ref|ZP_04161764.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757327|gb|EEM06566.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763483|gb|EEM12385.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 234

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E         R D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAA 114
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +    G  +V     + +V G++     +  ++L +   +     +K +I+
Sbjct: 125 QTTQPMKETHFISFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPEYIKTVRGLGYKF 231


>gi|229010510|ref|ZP_04167712.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229132011|ref|ZP_04260874.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166052|ref|ZP_04293816.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617463|gb|EEK74524.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651411|gb|EEL07383.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228750708|gb|EEM00532.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            ++  I+R  +  P+  ++   S    +  F  G DD + KP +        +   R   
Sbjct: 64  FDICPILRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +        G   +     +  V G V     +  ++L +   N     +K +++
Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|228990198|ref|ZP_04150168.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769561|gb|EEM18154.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 234

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E         R D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAA 114
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +    G  +V     + +V G++     +  ++L +   +     +K +I+
Sbjct: 125 QTTQPMKETHFLSFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +      + + R LGY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPQYIKTVRGLGYKF 231


>gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 230

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  +           L    R D+  ++  L   G   L
Sbjct: 5   ILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLML--PGMDGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115
           ++ RI++     + + +I ++        +   + G DD + KP   RE    +  V   
Sbjct: 63  DVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +R          G +++     +  +      L  +E  +L+  + + GK   + Q+  
Sbjct: 123 SKRDAPLAGELVVGNLKLNFSRYEAHIGKVKLELTPKEFELLKLFVTDMGKVFTREQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G ++   +   V+ HI  LR KL  + +  + +++ R +GY  
Sbjct: 183 KVWG-YEYYGDTRTVDVHIRHLRAKLSIDPVLAEAIETVRGVGYRF 227


>gi|30261228|ref|NP_843605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526390|ref|YP_017739.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184060|ref|YP_027312.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318498|ref|ZP_00391457.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871824|ref|ZP_02216467.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635393|ref|ZP_02393707.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640233|ref|ZP_02398499.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688103|ref|ZP_02879315.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707629|ref|ZP_02898081.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654173|ref|ZP_02936146.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566754|ref|ZP_03019671.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816035|ref|YP_002816044.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603977|ref|YP_002865651.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682711|ref|ZP_05146572.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254734129|ref|ZP_05191842.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740227|ref|ZP_05197919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753567|ref|ZP_05205603.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758664|ref|ZP_05210691.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254842|gb|AAP25091.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501538|gb|AAT30214.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177987|gb|AAT53363.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712401|gb|EDR17935.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511834|gb|EDR87214.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529221|gb|EDR91974.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127404|gb|EDS96279.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667998|gb|EDT18749.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172080880|gb|EDT65960.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562306|gb|EDV16274.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006114|gb|ACP15857.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268385|gb|ACQ50022.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 234

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +  L R  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++       ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWEAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+                + D+  ++  L   G    
Sbjct: 6   ILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIML--PGMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ R IR  S+ P+I I+        +   + G DD + KP   +E++AR+         
Sbjct: 64  QVCREIRKKSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSG 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + V     +  V G++   P +E  +L +L +N  +   + Q+   +
Sbjct: 124 AENDTVKEVRYDNLVVNLTNYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G F+   +   V+ HI +LR+KL  K     + +   +GY  +
Sbjct: 184 WG-FEYYGDSRTVDVHIKRLREKLEGKSDQWSLKTVWGVGYKFE 226


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++      +         + D+  ++  L   G   L
Sbjct: 6   ILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIML--PGVDGL 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++   +   +P+I ++        +   + G DD + KP   RE++AR+ A  RR
Sbjct: 64  EVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRR 123

Query: 119 LKVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +          +          +     + G+      +E  +L+ L +N GK   +
Sbjct: 124 NFKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   I+G +D A +   V+ HI  +RKK+  + G   V++ R +GY  
Sbjct: 184 EYLLEKIWG-YDFAGDTRTVDVHIRHIRKKIEPEQGEKFVETVRGVGYKF 232


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +   +  E      ++ + D+  ++  L   G    +
Sbjct: 7   LVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIML--PGIDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+        +   + G DD + KP   +E++AR+ A+YRR+  S
Sbjct: 65  VCREIRKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQS 124

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +E   ++           +  V G+V   P +E  +L +L +N  +   + Q+   +
Sbjct: 125 SAESEIKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 185 WG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 228


>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
 gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 240

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++   + +        A  D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +     + N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
 gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 24/241 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    E   S      L      D+  ++  L   G    
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVML--PGMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------------- 104
           ++   IR  S  P+I +S    +   +     G DD + KP                   
Sbjct: 64  QVCTEIRKTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAM 123

Query: 105 ---HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               ++                   E   + V         +G    +P +E  IL +L 
Sbjct: 124 TESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLS 183

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + Q+   ++G ++   +   V+ HI +LR+KL N   +  + +   +GY  +
Sbjct: 184 SRPNQVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLNNNHNWS-IATVWGIGYKFE 241

Query: 222 W 222
           W
Sbjct: 242 W 242


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +E  ++             D+  ++      G    
Sbjct: 3   ILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLM--MPGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + +++R  +++P+I ++        +  FD G DD V KP   RE+ ARV         
Sbjct: 61  TVCKVLRKETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLEG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +        +    R+  V   V  L  +E  +L  L  N  +   + Q+ + ++
Sbjct: 121 EPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
             +D   +   V++HI++LR KL +++G  D + + R +GY  +W
Sbjct: 181 -EYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFEW 224


>gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 304

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   + D+  ++  L   G   +
Sbjct: 83  ILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLML--PGMNGI 140

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR   
Sbjct: 141 DICKTIRRSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 200

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N         +           E   L   E  +L  L    G+   + ++   ++G 
Sbjct: 201 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWG- 259

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 260 YKHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 299


>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
 gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
          Length = 244

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + E    L      D+  ++  L   G+  +
Sbjct: 13  ILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLML--PGKDGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 71  EVCKQLREKKATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTAN 130

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S                 + +  D       G    L  +E  +L +L  +  K   + Q
Sbjct: 131 SPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDREQ 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 191 LLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGYKFEV 241


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKG 57
           M   +++DD A +           G  +      +    +  S + D   ++  L    G
Sbjct: 1   MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDG 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------L 109
             V +  R     +  P++ ++        +   + G DD + KP   RE+         
Sbjct: 61  MDVCKTLRQ--ERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILR 118

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                            + G IR++ +  +   +     L  +E  +L YL +++G+ + 
Sbjct: 119 RFQNTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLT 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + Q+ +A++  +D   +  +V+ H+S LR+KL +       + + R LGY ++
Sbjct: 179 RDQLLNAVW-NYDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKLE 230


>gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++   + +        A  D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +     + N      + +  D       G    L  +   +L +L     K   + +
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   ++         +G  +           +    R DV  ++  L    G  V 
Sbjct: 5   LVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL R   +  ++P+I +S   + +  +   D G DD V KP   RE+    +     R+ 
Sbjct: 65  ELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQS 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +   GP+ +  +      +     L  +E  +L +L  + G+  ++ Q+   I+G
Sbjct: 125 QAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +D       V+ H+  +R+KL         +++ R +GY  
Sbjct: 185 -YDYLGGPRTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRF 225


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   +   +         +   D+  ++  +   G    
Sbjct: 3   ILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMI--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + +++R  +Q+P+I ++        +  FD G DD + KP   RE+ ARV         
Sbjct: 61  TVCKVLRKETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLDG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +        +    R+  V+G+   L  +E  +L  L  N G+   + Q+  +++
Sbjct: 121 ETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             FD   +   V++HI++LR K  +++G  D + + R +GY  ++N
Sbjct: 181 D-FDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYN 225


>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 244

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 24/241 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    E   S      L      D+  ++  L   G    
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVML--PGMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------------- 105
           ++   IR  S  P+I +S    +   +     G DD + KP                   
Sbjct: 64  QVCTEIRKTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAM 123

Query: 106 ----REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               ++     A             E   + V         +G    +P +E  IL +L 
Sbjct: 124 TESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLA 183

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + Q+   ++G ++   +   V+ HI +LR+KL N   +  + +   +GY  +
Sbjct: 184 SRPNQVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLNNNHNWS-IATVWGIGYKFE 241

Query: 222 W 222
           W
Sbjct: 242 W 242


>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +    +          + + D+  ++  L        
Sbjct: 7   ILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVML--PKVDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P++ ++        +   + G DD + KP   RE++ARV AI RR+  
Sbjct: 65  EVCRSLRARGSMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +                  V+G+   L  +E ++L+ L  NRG+  ++  +   +
Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   +   +   ++ HI  LR+K+  N      + + R +GY  
Sbjct: 185 W-EGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKF 227


>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 232

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +    +G +++          L  + R D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVML--PGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R +   + V ++ ++        L     G DD + KP   RE+      + R    
Sbjct: 64  EVCRRLHQETAVYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTRA 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +  + R+ +       L  RE  +L  L +  G+   + ++  
Sbjct: 124 PAGKTNERPSLIFDSLSIDPERREVKRGELQIELTPREFDLLYALASYPGRVFTREELLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D A  + VV+ H+  LR+KL +      V + R +GY  
Sbjct: 184 RVWGA-DFAGIDRVVDVHVGTLRRKLEDDGDASYVQTVRGVGYKF 227


>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 224

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V          +G +++   S E    +      D+  ++      G   +
Sbjct: 4   ILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIM--MPGMDGM 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  ++P++ ++   +    +   ++G DD V KP     ++ARV A+ RR +
Sbjct: 62  EVLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFEVLVARVRALLRRRQ 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +        + +             L   E ++L   M +  + + K Q+   ++G
Sbjct: 122 AERPQVLRFADLVLDTGTYTARRGDREIHLTALEFKLLHEFMLHPRQVLNKDQLLERVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV+E ++ +LR+KL  +     + + R +GY +
Sbjct: 182 -YDFGGNANVLEVYVKQLRQKLEAEGEPRLIHTVRGVGYVL 221


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +           L  + R D+  ++  L   G   L
Sbjct: 4   ILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVML--PGMNGL 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109
           E+ R +    A   +P+I +S        +   + G DD + KP   RE           
Sbjct: 62  EVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRR 121

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +      R  V   R + G + +  +     V G    L  +E  +L +L    G+  +
Sbjct: 122 IQKEEGREREAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + Q+   ++G +D A +   V+ HI  +R+KL      D P+++ R +GY  
Sbjct: 182 REQLLEQVWG-YDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYCF 232


>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 227

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G  +    +      L  + R D+  ++  L   G   +
Sbjct: 5   ILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVML--PGLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R+IR  S VP+I +S        +   ++G DD V KP  +  +LARV A  RR + 
Sbjct: 63  SVCRLIREESDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       + +       +  G+V  L   E  +L  L     +  ++ ++   ++G  
Sbjct: 123 EHEVLRVSDLTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGYR 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             + +  VV  HI +LR K+  +    + V + R +GY 
Sbjct: 183 QSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGYR 221


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  LE          +    +  +  ++  L   G    
Sbjct: 6   ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVML--PGMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           EL R+IRA S VP++ ++   S    ++  + G DD ++KP            L R + +
Sbjct: 64  ELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  +   + +F +       GE      +E  +L +++ NR +  ++ Q+  
Sbjct: 124 QNSQPEPVSGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G +D       V+ HIS LR+K+  +      + + R  GY  + 
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIETDPSRPRHLITVRGTGYKFEE 230


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +   +  E      ++ + D+  ++  L   G    +
Sbjct: 7   LVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIML--PGIDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+        +   + G DD + KP   +E++AR+ A+YRR+  S
Sbjct: 65  VCREIRKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQS 124

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +E   ++           +  V G+V   P +E  +L +L +N  +   + Q+   +
Sbjct: 125 SAESEIKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 185 WG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 228


>gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24]
 gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24]
 gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24]
          Length = 280

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++            +  R D+  ++  L   G   L
Sbjct: 55  ILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLML--PGMDGL 112

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119
           E+ R +R    VP+I ++        +   + G DD V KP   RE  +         R 
Sbjct: 113 EVCRRLRGQGPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 172

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V    R     G    L  RE  +L + + + G+  A+ ++   ++G
Sbjct: 173 APAPRPPSAAGLTVDPAARRATKDGTELALTLREFDLLVFFLRHPGRAFAREELMREVWG 232

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                 + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 233 WD--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 273


>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
 gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
 gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
           LL3]
          Length = 240

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   +E   + +    +  ++  D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 67  EVCRQLREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +       + N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEV 237


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G  +              +   DV  ++  L       L
Sbjct: 6   ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIML--PVLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R  S   ++ ++        +   ++G DD + KP   RE++AR         +
Sbjct: 64  AVCRRLRTFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRRPRH 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + + ++    G + +        + G++  L   E  +L  + A  G+  ++TQ+   
Sbjct: 124 TEVSMPSSLIHYGGLVIDPVAHTVALDGQLLTLTPIEYALLSVMAAAPGRVFSRTQLLDR 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+G  D   +E+VVE HI+ LRKKL +       + + R +GY  
Sbjct: 184 IWG-HDYFGDEHVVEVHITNLRKKLGDNPNRPQYIFTVRGIGYRF 227


>gi|152974657|ref|YP_001374174.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023409|gb|ABS21179.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD + +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHL 123

Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G  +V     + +V G +     +  ++L +   +     +K +I
Sbjct: 124 KYTPKTIQTSDIYSFGRFQVDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  N      + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +        +G              L  S   D+  ++  L         
Sbjct: 6   LIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIML--PVMDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR   + P+I ++     +  +   + G DD + KP   +E+LAR+ A+ RR    
Sbjct: 64  VLKKIRESDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGAE 123

Query: 123 NNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +    +         D  +  V G+    P +E  +L +L A+  +   + Q+   +
Sbjct: 124 EEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G FD   +   V+ HI +LR+KL        + +   +GY  + 
Sbjct: 184 WG-FDYFGDSRTVDVHIKRLREKLEGVSEQWSLKTVWGVGYKFEV 227


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +        +G  +    +      +  +   ++  ++  L   G    +
Sbjct: 8   LVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIML--PGADGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 66  VCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEHK 125

Query: 123 NNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +          +        G+    P +E  +L +L +N  K   + Q+   ++G
Sbjct: 126 DSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL ++     + +   +GY  + 
Sbjct: 186 -YDFYGDSRTVDVHIKRLREKLDSEGQNWQLKTVWGVGYKFEV 227


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +        D   +      E    L      D+  ++  L    G +V
Sbjct: 4   ILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
               R   + S++P++ +S        +   + G DD + KP   RE+        R A 
Sbjct: 64  CRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRAQ 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + +  + +    G + +  D  +  V+G       +E ++L  LM++ GK   +  + 
Sbjct: 124 YDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREMLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G FD  V+   V+ HI  +R+K+  +      + + R +GY  
Sbjct: 184 EQVWG-FDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKF 229


>gi|114152683|gb|ABI52588.1| two-component response regulator [Bacillus cytotoxicus]
          Length = 235

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD + +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHL 123

Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G  ++     + +V G +     +  ++L +   +     +K +I
Sbjct: 124 KYTPKTIQTSDIYSFGRFQIDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  N      + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231


>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
 gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 357

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++           L +  + D+  ++      G    
Sbjct: 129 ILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLM--MPGVDGW 186

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + R +R  + +P+I ++   +    +   + G DD V KP   RE        +     
Sbjct: 187 SVCREVRKTTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A                + +  + R   V  +   L  +E  +L  +  +  +   + ++
Sbjct: 247 APPAAQDGKPVVLNYPGLSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREEL 306

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             +++G +D   +   V++H+++LR KL+   G+   + +   +GY  + +
Sbjct: 307 IESVWG-YDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGYKFEVD 356


>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + + +DD A + +        +G  +    +      +    + D+  ++  L    G  
Sbjct: 3   LILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL+  +  R  +  P+I +S        +   + G DD + KP   RE++ARV A  RR 
Sbjct: 63  VLQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRK 122

Query: 120 KVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                + E              +  +  + G+   L  +E  +L  L  N G+   +  +
Sbjct: 123 SAPPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDIL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G +D A E   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 183 LEKIWG-YDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRF 229


>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
          Length = 239

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E  ++      +      DV  ++      G   +
Sbjct: 7   ILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVM--MPGMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCKEIREKKATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D      +G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGYKFEV 235


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 93/235 (39%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E    L      D+  ++  L       L
Sbjct: 5   ILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------ 108
           ++ + +R + ++ P++ ++        +   + G DD + KP   RE+            
Sbjct: 63  DICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSA 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                +     + +    + G + +F +  +  V  +   L  +E  +  YL  ++G+ +
Sbjct: 123 QLSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            + Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 TRDQLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEE 236


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + E    +      D+  ++      G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLM--MPGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   IR H   P+I ++        +  F++G DD + KP   RE           +  
Sbjct: 65  EVCEEIRKHKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +    + +      + + +D       G+   L  +E  +L YL  +  K  A+ Q
Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL        + + +   +GY  +
Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGYKFE 234


>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ E    +      DV  ++          +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLM--MPKLDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++   +R     P++ ++        +  F+ G DD + KP   RE           A  
Sbjct: 65  QVCEELRKTKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V+ +   L  +E  +L +L     K  ++ Q
Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + N
Sbjct: 185 LLKEVW-NYEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENN 236


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         G  +    S      +  +   D+  ++  L   G    E
Sbjct: 11  LVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLML--PGIDGWE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IR++SQ+P+I ++    LQ  L  F+ G DD V KP   +E++ARV A+  R  + 
Sbjct: 69  VCRQIRSNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  +    EV G    L +RE  +L +L ++ G+   +  +   ++G F
Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWG-F 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       V+ H+++LR+KL        + +   +GY +
Sbjct: 188 EFPGNTRTVDVHVNRLREKLDGLPKSWHIKTVWGVGYKL 226


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +           +      D+  ++  L   G    
Sbjct: 4   ILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQVRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225


>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
           [Syntrophus aciditrophicus SB]
          Length = 245

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +        +G ++      E       + + D+  ++  L G  G  +
Sbjct: 17  ILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGLDI 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
               R       +P+I ++        +   + G DD + KP + RE++AR       + 
Sbjct: 77  CRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRRSS 136

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R  + S        + V        V G+   L   E ++L  L    G+  ++ Q+  
Sbjct: 137 QRPKEASEGTFTFQGLHVDYRTYQVSVDGKKIELGPTEIKLLRCLTRQPGRVFSRDQLLD 196

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A++G  +  VE   V+ HIS+LR  +  +K     + + R +GY  
Sbjct: 197 AVWGE-EAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGYKF 241


>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E    L      D+  ++  L   G    
Sbjct: 7   ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIML--PGMDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV         
Sbjct: 65  EVCARLRQFKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 124

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A   +   S+N      + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 125 TAFLSKDSNSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVFSREE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAAVMITTVWGVGYKLEV 235


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 88/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++   +              D+  ++           
Sbjct: 6   ILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVM--MPVMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R IRA    P+I ++        +   + G DD + KP   +E+ AR+        +
Sbjct: 64  EVCRKIRAKDNTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTK 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    +   + +  +  + +V+G+V   P +E  +L  L  +  +   + Q+   ++
Sbjct: 124 EEDNKGVYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 G-FEYYGDSRTIDVHVKRLREKLEGASDKWNLKTVWGVGYKFEV 226


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E      +S R D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + V          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDNPHWS-IATVWGIGYKFEV 230


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     +       +    +  ++  L   G    
Sbjct: 6   ILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLML--PGMDGR 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           ++   IR HS VP++ ++        +  F+ G DD V KP   RE+      + +    
Sbjct: 64  DVCAQIRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +        + +  D R  EV G+   L  +E  +L Y+     K  ++ ++  
Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
            ++  +    ++  V++HI +LR+KL          + +   +GY  + 
Sbjct: 184 DVW-NYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFEV 231


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    L +    D+  ++  L   G    
Sbjct: 18  ILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIML--PGMDGF 75

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R IR+       P+I +S        +   + G DD + KP          + I  R
Sbjct: 76  ELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 135

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++A  +  +    +     + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 136 LSAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 196 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 244


>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
 gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
          Length = 249

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ ++     E       +   D+  ++  L        
Sbjct: 26  ILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVML--PKLDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 84  QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G +R+  + R   +      L  +E  +LE L  N  K  ++  + + 
Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 204 IWG-YDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYF 247


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A V+D        +G  +      E      ++   D+  ++  L    +  
Sbjct: 5   VILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIML--PKKDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  + VP+I +S        +   + G DD V KP   RE++ARV A+ RR  
Sbjct: 63  WSVCREIRRQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSN 122

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + + ++ R  EV+G+   L  +E  +L +L +   +  ++ Q+ +
Sbjct: 123 APAGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++  ++   +   V++HI +LR+KLR   G + + +   LGY  + 
Sbjct: 183 GVWD-YEYPGDTRTVDTHIKRLREKLRG-TGRNYLKTVWGLGYKFEV 227


>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 237

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +                R D+  ++  L    G +V
Sbjct: 6   ILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
               R ++  S  P+I ++       T+   + G DD + KP   RE++           
Sbjct: 66  CRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRAKR 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +               + V  D  +  V      L  +E  +L+ L +N+GK  ++  +
Sbjct: 126 ILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSREVL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              ++G ++ + +   V+ HI  LR+KL  +      +++ R +GY  
Sbjct: 186 LEKVWG-YEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRF 232


>gi|229084208|ref|ZP_04216492.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699086|gb|EEL51787.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 233

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILQKEGFSHITTATSAEKALLLVEQKHFDLMILDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +        +   R   
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +       G +++     + +V GE+     +  ++L +   +     +K +I+
Sbjct: 124 KQTPQTIKEYTLSFGRVQIDKHAAELQVDGEIVECSAQLFQLLLFFCEHPNYVFSKEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +      + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPKYIKTIRGLGYKF 230


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +        +G  +    +      +  +   ++  ++  L   G    +
Sbjct: 10  LVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIML--PGADGWQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 68  VCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEHK 127

Query: 123 NNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +          +        G+    P +E  +L +L +N  K   + Q+   ++G
Sbjct: 128 DSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL ++     + +   +GY  + 
Sbjct: 188 -YDFYGDSRTVDVHIKRLREKLDSEGQNWQLKTVWGVGYKFEV 229


>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++  ++ +        A  D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +     + N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 274

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D         G  ++          L +S + D+  ++  L   G   +
Sbjct: 34  ILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRML--PGLDGV 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++   +    +   + G DD V KP   RE++ RV ++ RR   
Sbjct: 92  EVCRRLRQTMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRRSIK 151

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R     G    L  RE  +L ++M    +  ++ ++  A++
Sbjct: 152 EFAPEPPVEAAGLELDPASRTVTHGGVPLALTVREFDLLAFMMRRPNQVFSREELIKAVW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G      + + V  H+ +LR+K+  N    + + +   +GY  D
Sbjct: 212 GWD--FGDLSTVTVHVRRLREKIEANPTKPELLKTVWGVGYRFD 253


>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G+++    + +    +  + + D+  ++           
Sbjct: 4   ILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIM--MPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F  G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++         +             PLP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPNAPFFIRTIRGLGYRLE 221


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     +       +    +  ++  L   G    
Sbjct: 6   ILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLML--PGMDGR 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           ++   IR HS VP++ ++        +  F+ G DD V KP   RE+      + +    
Sbjct: 64  DVCAQIRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +        + +  D R  EV G+   L  +E  +L Y+     K  ++ ++  
Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
            ++  +    ++  V++HI +LR+KL          + +   +GY  + 
Sbjct: 184 DVW-NYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFEV 231


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 4/226 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + ++++D A +          +G  +   +  E    L +     +  ++  L    G +
Sbjct: 8   LILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117
           V    R        P+I ++        +   +SG DD +             R      
Sbjct: 68  VCRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRA 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              ++        + +          G    L   E R+L + M + G+  ++ Q+   +
Sbjct: 128 APGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDVV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D  VE   V+ HI +LRK L      D + + R  GY++D N
Sbjct: 188 WG-HDVYVEPRTVDVHIRRLRKALNETDDQDLIRTVRSAGYALDQN 232


>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   ++   + +        A  D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 67  EVCRQVREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +       + N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYLNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 228

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E       +   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 63  QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               A       G +++  + R   +      L  +E  +LE L  N  K  ++  + + 
Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYF 226


>gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus]
          Length = 267

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +  +      G ++E  +         ++ R D+  ++  L        E
Sbjct: 21  LVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPA--MDGFE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R H  VP+I ++     +  +   ++G DD V KP   RE++ RV ++ RR + +
Sbjct: 79  VCRRMREHGPVPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVLRRARAA 138

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                TGP+           R     G    L  RE  +L +L+ + G+   + ++   +
Sbjct: 139 APADGTGPLSGGGLSLDPASRQASRDGHGLALTLREFDLLAFLLRHPGRAFGREELMREV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G      + + V  HI +LR K+ +       + +   +GY +D
Sbjct: 199 WGWD--FGDLSTVTVHIRRLRGKVEDDPARPRLIRTVWGVGYRLD 241


>gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 241

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++             +   DV  ++  L   G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLML--PGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA    P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIRAQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL          + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
 gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
          Length = 238

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E     E    L  +   D   ++      G   +E
Sbjct: 8   LIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLM--MPGMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + + +R     P+I ++        +  F+ G DD + KP   RE           +   
Sbjct: 66  VCKELRQKKSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSKT 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +       + +      + + +D       G+   L  +E  +L +L     K   +  +
Sbjct: 126 SYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDREHL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDWN 223
              ++  +D   +   V++H+ +LR+KL          + +   +GY  + N
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVN 236


>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 227

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIML--PGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++  +                  +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227


>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G ++    + +    +  + + D+  ++           
Sbjct: 4   ILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIM--MPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++         +          +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221


>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 238

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E      SS    +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVML--PGMDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+   +R     P++ ++        +  F+ G DD V KP   RE++ RV         
Sbjct: 66  EVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A   +    +N      + +  D       G    L  +E  +L YL ++  K  ++ +
Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKLEV 236


>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 227

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIML--PGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++  +                  +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227


>gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 276

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                    R  +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPTARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237


>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 238

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     E    L +S    +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVML--PGIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P++ ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCNRLRQVKATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRASA 125

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAYLTKESGTSNNIVFPHLVIEHDAHRVTANGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEV 236


>gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 240

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G  ++            ++ R D+  ++  L   G   LE
Sbjct: 14  LVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLML--PGMDGLE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRLK 120
           + R +R    VP+I ++        +   + G DD V KP   RE  +         R  
Sbjct: 72  VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRPA 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R     G    L  RE  +L + + + G+   +  +   ++G 
Sbjct: 132 EQSGALRAAGLSLDPQARRAVKNGTELALTIREFDLLAFFLRHPGRVFGREDLMREVWGW 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 192 D--FGDLSTVTVHIRRLRGKVEDDPARPRLIQTVWGVGYRFE 231


>gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 226

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +G  +E   +      L +    D+  ++  L   G   L
Sbjct: 5   ILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALAA-NNPDLIILDIML--PGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRRL 119
            + R IR++S +P++ ++        +   D+G DD + KP          R     R  
Sbjct: 62  AVCRQIRSNSDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEELLARIRALLRRRSR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      +   + + +  R+       F L  +E  +L Y + N  + + + ++ + I+G
Sbjct: 122 ETEAEVLQFSDLTLNTSTREGFRGQRSFSLTAKEYELLLYFLQNPHRVLTRDELMTRIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D + E NV+E +I  LR KL        + + R +GY +
Sbjct: 182 -YDFSGESNVLEVYIGYLRAKLEAGGEPRLIQTVRGVGYVL 221


>gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 227

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIML--PGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +                  +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESEEKQAVSYPELYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227


>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
 gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E           D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           ++ + IR  S +P++ ++        +   + G DD + KP +        + + R  A 
Sbjct: 63  QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +     +     G +++  +GR   +  +   L  +E  +LE L  N  K  ++  + +
Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 183 LIWG-YDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYF 227


>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 241

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     E           D+  ++  L   G   +
Sbjct: 10  ILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLML--PGMDGV 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           ++ R +R     P+I ++        ++ F++G DD V KP   RE++ RV         
Sbjct: 68  DVCRELRNKKATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A       ++N      + +  D  +    G    L  +E  +L YL ++  K   + +
Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY ++ 
Sbjct: 188 LLRDVW-NYEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKLEV 238


>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E           D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 63  QVCQQIREFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G +++  +GR   +      L  +E  +LE L  N  K  ++  + +
Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 183 LIWG-YDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYF 227


>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 238

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +   +E  +  +       +   DV  ++          +
Sbjct: 7   ILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLM--MPEMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCQKLRKQKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +    + +      + + +D     V  +   L  +E  +L YL  +  K  ++ Q
Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  +D   +   V++HI +LR+KL   +      + +   +GY  + 
Sbjct: 185 LLKDVW-NYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFEV 235


>gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 241

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++             +   DV  ++  L   G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLML--PGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA    P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIRAQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL          + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 231

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +           +      D+  ++  L   G   L
Sbjct: 3   ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIML--PGMSGL 60

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           E+ + IR     +++P+I +S        +   + G DD + KP   R     + AR+  
Sbjct: 61  EVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  R        +   I +  +     V+G+      +E  +L+ L +N GK   +  + 
Sbjct: 121 LEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEFELLKLLASNPGKVFTREYLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             I+G ++   +   V+ HI  +R+K+ +       +++ R +GY  
Sbjct: 181 EKIWG-YEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGVGYRF 226


>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E      SS    +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVML--PGMDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+   +R     P++ ++        +  F+ G DD V KP   RE++ RV         
Sbjct: 66  EVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A   +    +N      + +  D       G    L  +E  +L YL ++  K  ++ +
Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSSDSAAMITTVWGVGYKLEV 236


>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 238

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E    + +    D+  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVML--PGIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        +  F++G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCSRLRQVKATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
           +    +              ++ +   +           +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKLEV 236


>gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 241

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++             +   DV  ++  L   G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLML--PGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIREQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL          + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G   +             S +  +  ++  L         
Sbjct: 6   LIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIML--PVMDGWT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S  P+I ++     +  +   +SG DD + KP   +E+LAR+ A+ RR    
Sbjct: 64  VLKKIREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQE 123

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +              D  +  V G+    P +E  +L +L +   +   + Q+   ++
Sbjct: 124 EEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V+ HI +LR+KL        + +   +GY  + 
Sbjct: 184 G-FDYFGDSRTVDVHIKRLREKLEGVSDQWRLKTVWGVGYKFEV 226


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D    ++        +G  +    + E    L + A  D+  ++  +    G +V
Sbjct: 8   ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIEV 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       +P+I +S        +   ++G DD V KP   RE++ARV    RR++
Sbjct: 68  CRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRIR 127

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +     I +  +        +   L   E R+L  L+   G+  ++ Q+   ++
Sbjct: 128 PAATGGQLCYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V+   V+ HI++LRK L    G DP+ + R  GY++
Sbjct: 188 GR-DIFVDTRTVDVHIARLRKALTQHGGDDPIRTVRGAGYAL 228


>gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 327

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                    R  +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237


>gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 227

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIML--PGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++                     +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKIGDGTNWKL-TTVWGVGYKFEVN 227


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD     +  +     +G      N  E    L  S   D+  ++  L       L+
Sbjct: 14  LIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVML--PRLSGLD 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       T+   + G DD V KP    E++AR+ A  RR K  
Sbjct: 72  VCRTIRQESSVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E+  I V+ D    +V+G    LP +E  +L   + N G+ + +  I   
Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R +GY ++
Sbjct: 192 VWG-SDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLE 236


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++  +  +    + +    ++  ++  L        
Sbjct: 6   ILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLML--PVIDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + + +R  S +P+I ++        +  F+ G DD V KP   RE++ARV A       
Sbjct: 64  TVCKEVRKKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLGP 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K      E   + +  + R     G+   L  +E  +L +L  N+ K   + ++   ++G
Sbjct: 124 KGPEQTLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI +LR+KL        + +   +GY  + 
Sbjct: 184 -YDFFGSLRTVDTHIKQLREKLGRSKAASYITTVWGVGYKFEV 225


>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E  ++ E    L  +   D+  ++      G   +
Sbjct: 7   LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVM--MPGMDGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + +R     P++ ++        +  F+ G DD + KP   RE           A  
Sbjct: 65  EMCQELRKKKATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +    + +    GP+ + +D     V      L  +E  +L YL  +  K  ++ Q
Sbjct: 125 TKFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  +
Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGYKFE 234


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +       F  +G  ++  N+ +      S+   ++  ++  L   G+   
Sbjct: 7   ILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIML--PGKDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R IR  S +P+I ++        +   + G DD V KP   +E++ARV      Y +
Sbjct: 65  DICREIRRMSDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +NN      + +  +    + Q +   LP +E  +L +L ++  K   + Q+   ++
Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V+ H+++LR+K+ ++     + +   +GY  + 
Sbjct: 185 G-FDYYGDSRTVDVHVNRLREKIGSENDPWKISTVWGVGYKFEV 227


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G S+   +  E      ++ + D+  ++  L   G    +
Sbjct: 7   LIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVML--PGLDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P++ I+        +   + G DD + KP   +E++AR+ A+ RR   S
Sbjct: 65  VCREIRKKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQS 124

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               E   +R           + +V G+V   P +E  +L YL +N  +   + Q+   +
Sbjct: 125 PAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G F+   +   ++ HI +LR+KL        + +   +GY  +
Sbjct: 185 WG-FEYYGDSRTIDVHIKRLREKLEGVSDKWELKTVWGVGYKFE 227


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G S+E  +  +      +    D+  ++  L       LE
Sbjct: 7   LVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLML--PKMDGLE 64

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +S +P++ ++        +   + G DD + KP   RE++ARV AI RR++ 
Sbjct: 65  VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++   G             ++G +   +G+   L  +E  +L +L ++RGK +++ Q+
Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +A++  +D   +  +V+ H+S LR+K+         + + R +GY  +
Sbjct: 185 LNAVWD-YDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGYKFE 232


>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E      +  R D+  ++  L   G    
Sbjct: 7   ILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R ++ +P+I +S        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREVRRNNNLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   + +          G    +P +E  +L +L ++  +   + Q+ 
Sbjct: 125 PKADTAADAKTVEYPGLSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++      + +   +GY  + 
Sbjct: 185 DHIWG-YEYLGDTRTVDVHIKRLREKIKDH-EQWSIATVWGIGYKFEV 230


>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G  +          ++    + D+  ++           
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLM--MPEMGGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E  R     S+ P+I ++        +   + G DD V KP + RE++AR+       ++
Sbjct: 62  EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +      I +   GR   V G    L   E  IL  LMA  G+  ++  +   + 
Sbjct: 122 APLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G       E  ++ HI  LR K+ +       +++   +GY  
Sbjct: 182 G-DAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGYRF 223


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D    ++        +G  +    + E    L + A  D+  ++  +    G +V
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       +P+I +S       T+   ++G DD V KP   RE++ARV    RR++
Sbjct: 68  CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVR 127

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ A      I + ++            L   E R+L  L+   G+  ++ Q+   ++
Sbjct: 128 PASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V+   V+ HI++LRK L +  G DP+ + R  GY++
Sbjct: 188 GR-DIYVDTRTVDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228


>gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 233

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S +   +      +    R DV  ++  L   G   L
Sbjct: 3   ILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLML--PGLDGL 60

Query: 62  ELPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----- 113
           E+   IR          + ++        +    +G DD + KP   RE++ARV      
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 + +       T  I             E   L   E  +L   ++  G+  ++T
Sbjct: 121 SLRQGGQTQTHQTPHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           Q+   ++G  D   +E VV++H+++LRKK+  +      + +   +GY  + N
Sbjct: 181 QLIDKLWG-DDFFGDERVVDTHVARLRKKIEPDPSHPTFIKTVTGVGYKFEDN 232


>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 233

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D        +G  +   ++      + +    D+  ++      G   
Sbjct: 5   LILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIM--MPGMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR    VP++ +S        +    +G DD + KP +  E++ARV A  RR  
Sbjct: 63  LEVCRAIRRERNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRRYL 122

Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N  +               +   GR     G    L   E  IL  L ++ G+  +  
Sbjct: 123 SLNPASAAAREPGVLAVGGLRIDPLGRSVFKDGREIALTPTEFDILLLLASHPGRVFSSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR+K+ +       + +   +GY I+ 
Sbjct: 183 EIFERVW-KEHYFQSNNTVMVHIRRLREKVEDDPSHPTLIRTVWGVGYKIEK 233


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D    ++        +G  +    + E    L + A  D+  ++  +    G +V
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       +P+I +S       T+   ++G DD V KP   RE++ARV    RR++
Sbjct: 68  CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVR 127

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ A      I + ++            L   E R+L  L+   G+  ++ Q+   ++
Sbjct: 128 PASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V+   V+ HI++LRK L +  G DP+ + R  GY++
Sbjct: 188 GR-DIYVDTRTVDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 94/234 (40%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLML--PKLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAETGPIRVF-----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +++   +                   D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLEE 235


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 92/236 (38%), Gaps = 18/236 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      +S + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLML--PKMDGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------E 107
           E+ + +R      P++ ++        +   + G DD + KP   R             +
Sbjct: 63  EVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQ 122

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                     + ++  ++ + G +R+  +  +   Q E   L  +E  +L YL  ++G+ 
Sbjct: 123 QSQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + +  + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 LTRDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 237


>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
 gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
 gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
 gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   +E   + +           D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 67  EVCRQVRDKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +       + N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYLNTDTTAKNVLVFSHLSIDHDAHRVMADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPKAAKKIVTVWGVGYKFEV 237


>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +E  +  E      S    D+  ++  L        
Sbjct: 5   ILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P++ ++        +   + G DD + KP   RE+LARV A +RR++ 
Sbjct: 63  QVCRKIRESFSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122

Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  G I      +     + +    V  L  RE  +L++L     +   + Q+   
Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +       + +KR +GY  
Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYF 226


>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 238

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E      +++   +  ++  L   G   +
Sbjct: 8   ILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVML--PGMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---------V 112
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ R          
Sbjct: 66  EVCTRLRQTKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A   +  V +N      + +  D       G    L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEV 236


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +     F  +G  +E     E       ++  D+  ++  L        
Sbjct: 5   ILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP++ ++        +   + G DD V KP   RE++ARV AI RR +V
Sbjct: 63  TVCREIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRV 122

Query: 122 SNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +               I +     +     ++  L  RE  +L +LMA+ G+  ++  
Sbjct: 123 AESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREA 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+KL       + + ++R +GY  
Sbjct: 183 LLEEVWG-YDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGYYF 230


>gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 227

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +       +    +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIML--PGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++                     +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGKNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ + + +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKIGDGINWKL-TTVWGVGYKFEVN 227


>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD   + +        +G  +           L  S + D+  ++  L    G  V 
Sbjct: 5   LVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +  +    +P+I +S        +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 65  RLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRSEE 124

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E             +  D    E+ G    L  +E  ++ +L    GK  ++  +
Sbjct: 125 VETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRDYL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              I+G +D   +   V+ HI  +R+KL         +++ R +GY  
Sbjct: 185 LEQIWG-YDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRF 231


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G ++   +              D+  ++  L        
Sbjct: 4   ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIML--PRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R  S VP+I ++        +   + G DD ++KP    E LAR+ AI RR + 
Sbjct: 62  SVCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSER 121

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +E   +      V +  R      +   LP++E  +L  L+ NRG  +++  +   
Sbjct: 122 QPRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G  D   +   V+ HI  LR+K+         + + R +GY  +
Sbjct: 182 VWG-PDFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGYRFE 226


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 92/236 (38%), Gaps = 18/236 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      +S + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLML--PKMDGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------E 107
           E+ + +R      P++ ++        +   + G DD + KP   R             +
Sbjct: 63  EVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQ 122

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                     + ++  ++ + G +R+  +  +   Q E   L  +E  +L YL  ++G+ 
Sbjct: 123 QSQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + +  + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 LTRDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 237


>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +      D+  ++  L    +   
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R IR  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  EVCREIRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +     + +++ ++  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWRIKTVWGVGYKFE 222


>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 226

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIML--PGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCKEVRKFSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEG 124

Query: 122 SNNRAETGPIRVFS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         ++          +G+   L  +E  +L +L  +  +   + Q+   ++G
Sbjct: 125 ESEDKSVSYPDLYVSLSEYKVIYKGKNIDLTPKELELLYFLCTHPNRVFTRDQLLENVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   V+ HI +LR+K+     +    +   +GY  + N
Sbjct: 185 -YDYMGDSRTVDVHIKRLREKVGEGPNWKL-TTVWGVGYKFEVN 226


>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L    +   
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G ++    + +    +  + + D+  ++           
Sbjct: 4   ILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIM--MPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++         +        G+     P +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221


>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 231

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +        +G  +   N  +    +  + R D+  ++  L G  G  V
Sbjct: 4   ILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDGLTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R       +P+I +S        +   + G DD + KP   RE++ARV A  RR  
Sbjct: 64  CRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLRRHV 123

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +T          +    E  G+   L   E  +L  L  + G+  ++  +   +
Sbjct: 124 PVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELLLQKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G +D   +   V+ HI  +R+KL R       +++ R +GY  
Sbjct: 184 WG-YDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRF 226


>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G ++    + +    +  + + D+  ++           
Sbjct: 6   ILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIM--MPEMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 64  ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++         +        G+     P +E  +L  L +  GK   + ++   I+G 
Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 183 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 223


>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 223

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L    +   
Sbjct: 3   ILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 240

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 8   ILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFEQFNPDLVILDVNL--PDAIGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
            L + +++ + V ++ ++        +  F  G DD + KP         + A +     
Sbjct: 66  NLCQDMQSRNGVFVLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQRV 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+     +  PL   E  +L +L ++ G+   ++++   +
Sbjct: 126 VTTAEQKRLIFEKLMIDPVRREVSFNNQPVPLTALEFDLLHFLASHPGRVWRRSELIQEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  +
Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDAGQPALIQTVRGVGYKFE 229


>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 225

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S++     E    L      D+  ++           
Sbjct: 8   ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIM--MPKIDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A       
Sbjct: 66  SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + + +  R+ ++   V  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 126 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+ +    + + + R  GY  +
Sbjct: 186 -WDYFGDSRTVDTHIKRLRKKIGD----NFIQTVRGFGYKFE 222


>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 226

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G+++    + +    +  + + D+  ++           
Sbjct: 6   ILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIM--MPEMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F  G DD + KP    E++ARV A+ +R ++
Sbjct: 64  ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++         +             PLP +E  +L  L +  GK   + ++   I+G 
Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 183 YDYEGDERTVDVHIKRLRERFAQPNVPFFIRTIRGLGYRLE 223


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      +  +  +  ++  L       +
Sbjct: 5   ILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLML--PKLDGV 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE++ARV AI RR  
Sbjct: 63  EVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTD 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++   AE           +F +  +  V  +   L  +E  +L +L  ++G+ + + Q+ 
Sbjct: 123 LAQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 SAVW-NYDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLEE 230


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  LE          +    +  +  ++  +   G    
Sbjct: 6   ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMI--PGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           EL R+IRA S VP++ ++   S    ++  ++G DD ++KP          + L R + +
Sbjct: 64  ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQM 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + +F +       G       +E  +  +L+ NR +  ++ Q+  
Sbjct: 124 QNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G +D       V+ HIS LR+K+  +      + + R  GY  + 
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFEE 230


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G +LE               +  +  ++  L   G    
Sbjct: 32  ILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVML--PGIDGF 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           EL R+IR  S VP++ ++   S    ++  ++G DD ++KP          + L R +  
Sbjct: 90  ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    + G + +F +       G       +E  +  +++ NR +  ++ Q+  
Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G +D       V+ HIS LR+K+  +      + + R  GY  + 
Sbjct: 210 KVWG-YDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256


>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ +           D+  ++      G+  +
Sbjct: 7   ILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCKGIREKKATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVS 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRITADGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPNAAKMIVTVWGVGYKFEV 235


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A ++         DG  +           L      D++ ++      G   
Sbjct: 4   LILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIM--MPGMNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            EL R +R +S++P++ +S        +   + G DD + KP +  EI+ARV A   R  
Sbjct: 62  FELTRALRKYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRRAA 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S++      + + +        G   PL   E +IL  LM + G+   K Q++    G
Sbjct: 122 RNSSDVITVRELSLDTAAFQLTKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            +    ++N +  HISKLR+K+ +       + + R LGY ++ 
Sbjct: 182 NY-FEGDDNTMMVHISKLREKIEDDPRNPRYIITVRGLGYKLEK 224


>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 231

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE                    +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 223

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L    +   
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++   +  E    L      D+  ++  L       L
Sbjct: 4   ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLML--PKVTGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +++  + P+I ++        +     G DD V KP   RE++ARV A+ RR++ 
Sbjct: 62  EVCRRLQSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQP 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +        +           RD +V G+   L  RE  +L +L  +R +   + Q+ 
Sbjct: 122 QPDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLM 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G +  + + + V  HI +LR+K+ +       + +   +GY +
Sbjct: 182 ELVWG-YTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227


>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 228

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A     G  +    +      +    + D+  ++  L   G   +
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLML--PGMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+   +R  S V ++ ++        +     G DD + KP   RE++ARV       R 
Sbjct: 63  EITARLRERSDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQRN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      + +  + R+    G++  L   E  +L  L  N  + +++  +   ++
Sbjct: 123 KTAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D    + VV+ ++S+LR+K+    G + + + R +GY  
Sbjct: 183 GA-DFFGTDRVVDVYVSQLRRKIEAITGENVIRTARGVGYRF 223


>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
 gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
          Length = 235

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G         E    L  S       ++  L   G   +
Sbjct: 5   ILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIML--PGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++ + +R     P+I ++        ++ F+ G DD + KP   RE           ++ 
Sbjct: 63  QVCKRLREEKSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               ++   + +      + + +D        +   L  +E  +L +L  +  K   + Q
Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL        + + +   +GY  + 
Sbjct: 183 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGYKFEV 233


>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE                    +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S++     E    L      D+  ++           
Sbjct: 4   ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIM--MPKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A       
Sbjct: 62  SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + + +  R+ ++   V  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 122 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+ +    + + + R  GY  +
Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGD----NFIQTVRGFGYKFE 218


>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
 gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
          Length = 247

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +           D+  ++      G+  +
Sbjct: 16  ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIM--MPGKDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 74  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +  ++ +      + + +D       G+   L  +E  +L +L     K   + Q
Sbjct: 134 TTFFTQDTITKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  K       + +   +GY  + 
Sbjct: 194 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFEV 244


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        DG S+   +  +       +   D+  ++  L   G+   +
Sbjct: 10  LIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIML--PGKDGWQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+        +   + G DD + KP   +E++AR+ A+ RR+   
Sbjct: 68  VCREIRKISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGTG 127

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  E   +         D  + +V G++   P +E  +L YL +N  +   + Q+   +
Sbjct: 128 ISEPEQKEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDEV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G F+   +   ++ HI +LR+KL        + +   +GY  +
Sbjct: 188 WG-FEYYGDSRTIDVHIKRLREKLEGISDKWSLKTVWGVGYKFE 230


>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 241

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++             +   DV  ++  L   G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLML--PGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR H   P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIREHKTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 ATYAPVETTTKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL          + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|89096455|ref|ZP_01169348.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
 gi|89089309|gb|EAR68417.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
          Length = 234

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 13/231 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L+DD   +++   A    +G  L    +      L  S   D+  ++  L       
Sbjct: 5   LILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVAL--PDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ RIIR  ++VP++ +S        +     G DD + KP     ++A+V +  RR K
Sbjct: 63  FEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKT 171
             +   +           +  +  +   + R         +E ++L  L  N G+  +  
Sbjct: 123 ELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +F +I+G  D   +   V  HIS LRKK+       + + + R +GY  +
Sbjct: 183 HLFDSIWGK-DSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFN 232


>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +           L  S + D+  ++  L   G   L
Sbjct: 6   LLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLML--PGIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S   ++ ++        +   + G DD + KP   RE++ARV A++RR + 
Sbjct: 64  EVCHRLRTFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRPRH 123

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +++       ++GP+ +     +  + GE   L   E  +L  L +  G+   + Q+   
Sbjct: 124 ADDEPAPLLVQSGPLTIDVARHEALLAGEPLKLTNLEYALLSVLASAPGRVFTRAQLIER 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G  D   +++V++ HI+ LRKKL +       + + R +GY  
Sbjct: 184 VWGN-DYFGDDHVIDVHIANLRKKLGDDPTRPTFIMTVRGIGYRF 227


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++         G  +              + R D+  ++  L       
Sbjct: 5   LILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPA--LDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R  S   ++ ++        +   + G DD + KP   RE++ARV A++RR +
Sbjct: 63  FEVCRQLRTFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRPR 122

Query: 121 VSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S    E   +      + S+     + G    L   E R+L  L A  G+  ++ Q+  
Sbjct: 123 QSGYIDEPSTMTVGPLTIDSESHTVRLDGVPINLTPLEYRLLTILAAAPGRVFSRAQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G  +   +E+V+E HI+ LRKKL +       + + R +GY  
Sbjct: 183 QVWGN-NYFGDEHVLEVHIANLRKKLGDDPARPRFIFTVRSVGYRF 227


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++        +G ++    + +        A  D+  ++  L   G   +
Sbjct: 7   ILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWML--PGVSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++   A   +P+I +S        +   ++G DD V KP    E++ARV + +RR
Sbjct: 65  EICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRR 124

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          I + ++       G+   L   E R+L   M   G+   + Q+   
Sbjct: 125 TRPAAVGERLEYDDIVLDAETHRVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDR 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ HI +LRK L  + G DP+ + R  GY++
Sbjct: 185 VWGR-DIYVDTRTVDVHIGRLRKALTVRGGDDPIRTVRGAGYAL 227


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 5/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +         ++G  +                   +  ++  L    G  V
Sbjct: 6   ILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R  ++ S +P+I I+        +   + G DD + KP   RE++ARV A     +
Sbjct: 66  CREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRTK 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +   + G I++     +   +GE   L  +E  +L+ L+ N+G+ + +  +   I+
Sbjct: 126 VDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           G ++   E   V+ H+  LR+K+  +      +++ R +GY  ++
Sbjct: 186 G-YEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGYRFNY 229


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++         +G ++      +    +  S   D+  ++           
Sbjct: 4   ILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLM--MPVLDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +++R   ++P++ ++        +   D G DD + KP   RE++ARV A+ RR   
Sbjct: 62  TVCKMLRRERKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRAEG 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K +++       ++    R+ E+ GEV  L  +E  +L  L  N G+  ++ Q+   
Sbjct: 122 IGEKHNSHILSYPGFKLNELTRELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLLEM 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G FD   +   V++HI++LR KL       + + + R +GY  +
Sbjct: 182 VWG-FDYCGDSRTVDTHINRLRSKLERQPNQDEYIKTIRGVGYKFE 226


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    + +    D+  ++  L   G    
Sbjct: 14  ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 71

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R IR+       P+I +S        +   + G DD + KP          + I  R
Sbjct: 72  ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 131

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++   +  +    +     + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 132 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 192 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 240


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + +L+DD   + +        +G   +    + E    L    R D+  ++  L     +
Sbjct: 3   VLLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVML--PDLE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARV 112
             E+ R +R+ + VP++ ++   +    L     G DD + KP +        +  L R 
Sbjct: 61  GFEVCRRLRSFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQ 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               ++++      + G  R+        V+G   P P RE ++L +L  +  +  +K+Q
Sbjct: 121 QLAGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  ++G  +   E+N V  H+ +LR+K+  +      + + R LGY +
Sbjct: 181 LYEQVWGE-ESLGEDNTVMVHVRRLREKIEPDPAKPRYLVTVRGLGYKL 228


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E    +    + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREIL 109
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP               R   
Sbjct: 65  QVCRELRSSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A                E   + V          G    +P +E  +L +L ++  +   
Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + Q+   I+G ++   +   V+ HI +LR+K+++      + +   +GY  + 
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDH-EKWALTTVWGIGYKFEV 235


>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   +    S E    +  + + D+  ++  +   G   
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 75  FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 134

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S   +             P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 135 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G +    + N V  HI KLR+K+  +    + + + R LGY    N
Sbjct: 195 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 242


>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
 gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
          Length = 238

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L  +  K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFEV 235


>gi|186684226|ref|YP_001867422.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466678|gb|ACC82479.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 8   ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALALFEQFNPDLVILDVNL--PDVTGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
            L + +++ + V ++ ++        +  F  G DD + KP         + A +     
Sbjct: 66  NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +  PL   E  +L +L ++ G+   + ++   +
Sbjct: 126 ITTAEQKRLVFEKLMIDPVRREVALNNQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  +
Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDASQPALIQTVRGVGYKFE 229


>gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 233

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S +   +      +    R DV  ++  L   G   L
Sbjct: 3   ILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLML--PGLDGL 60

Query: 62  ELPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----- 113
           E+   IR          + ++        +    +G DD + KP   RE++ARV      
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 + +       T  I             E   L   E  +L   ++  G+  ++T
Sbjct: 121 SLRQGGQTQTYQTAHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           Q+   ++G  D   +E VV++H+++LRKK+  +      + +   +GY  + N
Sbjct: 181 QLIDKLWG-DDFFGDERVVDTHVARLRKKVEPDPSHPTFIKTVTGVGYKFEDN 232


>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 238

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ +           DV  ++  L   G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLML--PGRDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR     P+I ++        +  F++G DD + KP   RE++ RV         
Sbjct: 65  EVCKEIREKKATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAAN 124

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++HI +LR+KL          + +   +GY  + 
Sbjct: 185 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFEV 235


>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 230

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVML--PKLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S ++           +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +     + + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
 gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
           B]
 gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Vollum]
 gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Australia 94]
 gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 250

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 19  ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 77  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 136

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 137 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 196

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 197 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 247


>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +          E    +    + ++  ++  L   G    
Sbjct: 7   ILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRSGSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   + V          G    +P +E  +L +L ++  +   + 
Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 185 QLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHTNWA-ITTVWGIGYKFEV 233


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       D+               L    +  +  ++      G   +
Sbjct: 6   ILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIM--MPGLDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I +S   +    +     G DD + KP    E++ARV A  RR K+
Sbjct: 64  EVCRRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S              + +   G +  + G    L  +E  +L +L  +  + + + QIF+
Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G F+E+ + N V  HI KLR+K+  +      + +   +GY  
Sbjct: 184 NVWG-FNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKF 228


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    + +    D+  ++  L   G    
Sbjct: 6   ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R IRA   +   P+I +S        +   + G DD + KP          + I  R
Sbjct: 64  ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++   +  +    +     + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 236

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G  +          ++    + D+  ++           
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLM--MPEMGGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E  R     S+ P+I ++        +   + G DD V KP + RE++AR+       ++
Sbjct: 62  EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +      I +   GR   V G    L   E  IL  LMA  G+  ++  +   + 
Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G       E  ++ HI  LR K+         +++   +GY  
Sbjct: 182 G-DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223


>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 233

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E          +  +    V  ++  L        
Sbjct: 6   ILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLML--PELDGR 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV A+ +R+  
Sbjct: 64  EVCAQLRKQKDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVHQ 123

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E   +  F         R     G+   L  +E  +L YL     K   + ++  
Sbjct: 124 GPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
            ++  +    ++  V++HI +LR+KL          + +   +GY  + 
Sbjct: 184 DVW-NYQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGYKFEV 231


>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
 gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
          Length = 238

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGIREKKATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFEV 235


>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
 gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E                 DV  ++      G+  +
Sbjct: 7   ILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R     P+I ++        +  F++G DD + KP   RE           +  
Sbjct: 65  EVCRELRERKATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  +    + +      + + +D       G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TSYLQTETAAKDVIVFRHLTIDNDAHRVIADGKEVSLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSEQAARMIVTVWGVGYKFEV 235


>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE                    +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIRTVYGVGYKF 226


>gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium
           resistens DSM 45100]
          Length = 224

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                 +   D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++            +SG DD V+KP   +E++ARV A  RR   
Sbjct: 63  DVCRAIREDSTVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKELVARVRARLRRNTD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +   G       EV PL   E  +L  L +   +   + ++   ++G 
Sbjct: 123 EKPEKLEISGLTIDVSGHQVTRGDEVIPLTPIEFDLLLTLASKPRQVFTREELLEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + ++ +  +V  HI +LR K+  +      + + R +GY 
Sbjct: 182 YRKSSDTRLVNVHIQRLRSKIEVDPDDPRIIQTVRGVGYK 221


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           E+ + IR  +     P+I I+        +   + G DD + KP   RE++ARV      
Sbjct: 64  EVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +     G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 264

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E            ++   D+  ++      G   L
Sbjct: 35  ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDI--QMPGMDGL 92

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+            
Sbjct: 93  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 152

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+ ++          G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 153 YAVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 212

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 213 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 259


>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E       S + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112
           ++ R IR+ +  P+I +S    +   +   + G DD + KP   +E+           +V
Sbjct: 65  QVCREIRSKAATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                        AE   + +          G    +P +E  +L  L A+  +   + Q
Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+K+++   ++ + +   +GY  +
Sbjct: 185 LLDRIWG-YEYIGDTRTVDVHIKRLREKIKDHPHWN-ISTVWGIGYKFE 231


>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
           (paired with YvrG) [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 248

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   L    S E    +  + + D+  ++  +   G   
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 75  FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 134

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S                 P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 135 QSKETNSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G +    + N V  HI KLR+K+  +    + + + R LGY    N
Sbjct: 195 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 242


>gi|300864039|ref|ZP_07108940.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300337962|emb|CBN54086.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 229

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +E     +    L      D   ++  L        
Sbjct: 6   ILVVDDDPAIRNLIHRYLSQQGYQVESAGDGQTALGLFEQLNPDFVILDVNL--PDTTGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +++ + V ++ ++        +  F+SGVDD + KP    EI  RV AI +R ++
Sbjct: 64  KLCQEMQSRTGVFVVMLTSRTDEADKIKGFESGVDDYITKPFSLVEIGFRVGAILKRKRI 123

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   I     +    R+  + G+   L   E  +L  L +  G+   + ++   +
Sbjct: 124 VTPAEQQSLIFGPLAIDPVRREVMLSGQTVSLTALEFDLLYCLASKPGRVWRRAELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++R+K+         + + R +GY  +
Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRRKIEPDANQPSMIQTVRGVGYKFE 227


>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     E    L +     +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVML--PGIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV         
Sbjct: 66  EVCSRLRQVKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A   +   S+N      + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKLEV 236


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVML--PKIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++ARV A  RR  +
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTAL 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+ +           +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SSVQDGKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +G ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WG-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    + +    D+  ++  L   G    
Sbjct: 6   ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R IRA   +   P+I +S        +   + G DD + KP          + +  R
Sbjct: 64  ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++A  +  +    +     + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 LSAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
 gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
          Length = 238

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E      SS   ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRQKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +            E   + +          G+   +P +E  +L +L ++  +   + Q+
Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHIKRLREKIKDHPSWAL-STVWGIGYKFEV 231


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI--GKGEK 59
            ++++D   + +        +G  +    S +           D   ++  L     G  
Sbjct: 6   IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGSMDGFD 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++ + +    +   P++ +S        +   + G DD V KP + RE++AR+ +I+RR 
Sbjct: 66  LIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRRQ 125

Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             S    E GP         + ++  +  V G    L   E  +L +L  N GK  ++  
Sbjct: 126 AASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRDV 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 186 LLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 233


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E       +   D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLML--PKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGSK 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++ E              +GR   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 QDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYF 227


>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 237

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + E           D+  ++      G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLM--MPGMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   IR     P++ ++        +  F++G DD + KP   RE           A  
Sbjct: 65  EVCEKIRKQKATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A  +    + +      + + +D        +   L  +E  +L YL +   K  A+ Q
Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL        + + +   +GY  +
Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGYKFE 234


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    + +    D+  ++  L   G    
Sbjct: 6   ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R IR+       P+I +S        +   + G DD + KP          + I  R
Sbjct: 64  ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++   +  +    +     + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
           processes YvrG [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
 gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
 gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
           processes [YvrG] [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
          Length = 237

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   +    S E    +  + + D+  ++  +   G   
Sbjct: 6   ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 64  FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S   +             P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 124 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G +    + N V  HI KLR+K+  +    + + + R LGY    N
Sbjct: 184 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 231


>gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 256

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++            +  R D+  ++  L   G   L
Sbjct: 31  ILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLML--PGMDGL 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119
           E+ R +R    VP+I ++        +   + G DD V KP   RE  +         R 
Sbjct: 89  EVCRRLRGQGPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 148

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        +      R     G    L  RE  +L + + + G+  A+ ++   ++G
Sbjct: 149 APAPRPPSAAGLTADPAARRATKDGAELALTLREFDLLAFFLRHPGRAFAREELMREVWG 208

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                 + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 209 WD--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 249


>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 293

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   +    S E    +  + + D+  ++  +   G   
Sbjct: 62  ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 119

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 120 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 179

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S   +             P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 180 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 239

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G +    + N V  HI KLR+K+  +    + + + R LGY    N
Sbjct: 240 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 287


>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 221

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S++     E    L      D+  ++           
Sbjct: 4   ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIM--MPKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A       
Sbjct: 62  SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + + +  R+ ++   +  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 122 IVDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+ +    + + + R  GY  +
Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGD----NFIQTVRGFGYKFE 218


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    +      D+  ++  L   G    
Sbjct: 6   ILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIML--PGMDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R +RA     Q P+I +S        +   + G DD + KP          R +  R
Sbjct: 64  ELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +  +    +     + + ++  +  V+  +  L   E  +L +L  N GK  ++ 
Sbjct: 124 IQQSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+         + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKF 232


>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
 gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
          Length = 238

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +           D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G+   L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  K       + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSSDAAKMIVTVWGVGYKFEV 235


>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
 gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
 gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
 gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
 gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
 gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 238

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 290

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRARHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                    R  +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             E  + + V  HI +LR K+ +       + +   +GY  
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRF 236


>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G ++      +      +  +  ++ ++           
Sbjct: 4   ILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVM--MPNMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +   P+I ++    L      F  G DD + KP   +E+L R+ A+ RR ++
Sbjct: 62  QLCEEIRRYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N          +     + +  G++  LP +E  +L  L +   +  ++ ++   I+G 
Sbjct: 122 VNADKIHLNETTIDRKSYEVQGHGKMLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 -DFEGDDRTVDVHIKRLRERFADRSGDFQIRTIRGVGYKLE 221


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ +      E    L  S   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVML--PKLTGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR K 
Sbjct: 63  EVCQQVREFSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        +++  + R   +      L  +E  +LE L  N+ K  ++ ++ + 
Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+ +       V +K  +GY  
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYF 226


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115
           E+ + IR  + +   P+I I+        +   + G DD + KP         +  V   
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +     G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S       +       + R D+  ++  L   G    
Sbjct: 18  ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIML--PGMDGW 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP++ ++     +  L   + G DD + K       +        R   
Sbjct: 76  EICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA 135

Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +            +        V+GE   L   E R+L+   +  G+  ++ Q+ + 
Sbjct: 136 LVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNH 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           ++   D +V +  V++HI  LR+KL     G + + +   +GY  +
Sbjct: 196 LHD-DDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240


>gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 235

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G  +E          LQ +   D+  ++  L       L
Sbjct: 3   ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTA--LQRAPEADLVLLDIML--PEVDGL 58

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EI 108
           E+ R ++A  Q   +P+I ++        +   + G DD V KP   R            
Sbjct: 59  EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A V    R  K        G +R+        +  +   L  +E  +L+ L+ N G+  
Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++ ++   I+G ++   +   V+ HI  LR KL++     D +++ R +GY  
Sbjct: 179 SRDELLERIWG-YEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230


>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 238

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     E      +++   +  ++  L   G   +
Sbjct: 8   ILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVML--PGMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---------V 112
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ R          
Sbjct: 66  EVCTRLRQTKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A   +  V +N      + +  D       G    L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEV 236


>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
 gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 226

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   + D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR   
Sbjct: 63  DICKTIRRSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N         +           E   L   E  +L  L    G+   + ++   ++G 
Sbjct: 123 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YKHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 221


>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + E       + + D++ I+           
Sbjct: 4   ILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R    +PL+ ++        +  F+ G DD V KP    E++ RV A+ +R ++
Sbjct: 62  ALCSALRESFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYRI 121

Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++++         +         GE   LP +E  +L  L +  GK   +  +   ++G+
Sbjct: 122 ASSQVVELGGLSMNRSDFQLVANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLWGM 181

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
            +   +E  V+ HI +LR++      GF  + + R LGY ++ 
Sbjct: 182 -NYEGDERTVDVHIKRLRERFPEEDFGFR-IVTIRGLGYRLEE 222


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115
           E+ + IR  + +   P+I I+        +   + G DD + KP         +  V   
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +     G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   ++   + +        +  D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   IR     P+I ++        +  F++G DD + KP   RE           +  
Sbjct: 67  EVCNQIRDKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +       + +      + +  D       G+   L  +E  +L +L     K   + +
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +    +              +  ++  L   G    +
Sbjct: 8   LIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIML--PGIDGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 66  VCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEHK 125

Query: 123 NNRAETGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                          +          +  LP +E  +L +L +N  K   + Q+   ++G
Sbjct: 126 EVDTLEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLEHVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD   +   V+ H+ ++R+K+        + +   +GY  + 
Sbjct: 186 -FDFYGDSRTVDVHVKRVREKIDLDGQPWQLKTVWGVGYKFEV 227


>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
 gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
          Length = 240

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 82/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   ++   + +           D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   IR     P+I ++        +  F++G DD + KP   RE           +  
Sbjct: 67  EVCNQIRDKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +       + +      + +  D       G+   L  +E  +L +L     K   + +
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 280

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    +  S   D+  ++  L        
Sbjct: 37  ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVML--PKMDGF 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A+I RR+  
Sbjct: 95  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGR 154

Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE   I             V ++ R      +   L   E  +LE L    G+ V 
Sbjct: 155 GSATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVP 214

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 215 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         +G  ++     E      ++    +  ++  L        
Sbjct: 8   ILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIML--PKLDGT 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP++ ++        +   + G DD V KP   RE++ARV AI RR +V
Sbjct: 66  EVCRRIRAQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +                R   V G    L   E  +L  L +N GK  +++ +   +
Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G  DE  +E  V+ HI  LR+K+  +    + + + R +GY  
Sbjct: 186 WG--DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGYVF 227


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E     E    L    R D+  ++  L   G   L
Sbjct: 5   ILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWML--PGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P++ ++   +LQ  +   D+G DD + KP    E+LAR+ A+ RR ++
Sbjct: 63  EVCQRLRTLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +       +  R         PL  +E  +LE  + +  + + +  IF  ++G 
Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E NV++ +I  LR+KL +      + + R +GY +
Sbjct: 182 YDFGGESNVLDVYIRYLRQKLESDGEPRLLHTVRGVGYVL 221


>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
 gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
          Length = 238

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D   A    +G ++    +         +   D+  ++  L   G    
Sbjct: 3   ILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLML--PGMSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R IRA S+VP++ ++   S    +  F  G DD + KP   RE+  R          
Sbjct: 61  EICRKIRALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTKN 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + + +   + + +G +  L   E ++L  ++ N  K   ++++   
Sbjct: 121 DLPLNDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI-DWN 223
            +G +D    +  +++HI  LR+K+ +       + +    GY   + N
Sbjct: 181 AFG-YDFDGFDRTIDAHIKNLRQKIEDDPKNPTYIKTVYGAGYKFGEEN 228


>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVML--PKIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+ +           +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SSTQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
 gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
          Length = 238

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115
           E+ + IR  + +   P+I I+        +   + G DD + KP         +  V   
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +     G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         E    L  S   D+  ++  L        
Sbjct: 5   ILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIML--PKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
            + R +R     P++ ++        +   + G DD + KP   RE++A      R    
Sbjct: 63  TVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMIP 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   +N+  + G + + +D  + +   E   L  RE  ++++L A +G   ++  +  
Sbjct: 123 GEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G ++   +   V+  + ++R+KL  +      + +KR +GY  + 
Sbjct: 183 KVWG-YEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGYYFNK 229


>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
          Length = 242

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E         R D+  ++  L   G    
Sbjct: 17  ILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLML--PGMDGY 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR  V
Sbjct: 75  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +           E   +P +E  +L +L ++  +   + Q+ 
Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++      + +   +GY  + 
Sbjct: 195 DHIWG-YEYIGDTRTVDVHIKRLREKIKDH-DKWSIATVWGIGYKFEV 240


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + D     F  +G  +E   + +    L      D+  ++           
Sbjct: 5   ILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIM--MPKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S VP+I ++        +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 63  EALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFDS 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + +        + +  +        EV  L  RE  +L++L +  G+  ++ ++   
Sbjct: 123 PDKKDDSSILKVMDLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSREELLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++  ++   +   V+  + +LR+K+ + K GF  + +KR +GY  
Sbjct: 183 VW-EYEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGYFF 226


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D    ++        +G  +      E    L S A  D+  ++  +    G +V 
Sbjct: 9   LLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   +   +P+I +S       T+   ++G DD V KP + RE++ARV    RR + 
Sbjct: 69  RQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRTRP 128

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   A      I++  +       G    L   E R+L  L+   G+  ++ Q+   ++G
Sbjct: 129 AAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI++LRK L  + G DP+ + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIARLRKALTREGGGDPIRTVRGAGYAL 228


>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G ++E   + E       +   D+  ++  L   G   L
Sbjct: 5   ILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLML--PGMDGL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           E+ R +RA H  V ++ ++   S    +   + G DD V KP    E++AR         
Sbjct: 63  EVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQ 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             R        E   +R+    R     G+   L  RE  +L +L  +  +   + Q+  
Sbjct: 123 LDRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G+ D       V+SHI +LR K+         + +   +GY  
Sbjct: 183 EVWGI-DYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGYKF 227


>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++        +G ++      E    L       ++ ++      G+   
Sbjct: 5   ILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVM--MPGKNGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P+I ++    ++     F +G DD + KP    E+L R+ A+ RR ++
Sbjct: 63  ELCREIREFYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRRYQM 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +        +       +V+ E+  LP +E  +L  L +   +   + Q+   ++G 
Sbjct: 123 VSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   ++ HI +LR+K   K     + + R LGY ++ 
Sbjct: 182 GDTESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEV 223


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E      +S + D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR KV
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             +          G+   +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHPQWSL-STVWGIGYKFEV 230


>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 233

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E           D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDNPNWAL-STVWGIGYKFEV 230


>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 238

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 84/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   + E    L      DV  ++          +
Sbjct: 7   ILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLM--MPKMDGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCTELRKTKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + S +      + + +D     V GE   L  +E  +L +L     K  ++ Q
Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  +
Sbjct: 185 LLKEVW-NYEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGYKFE 234


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  ++  N  +  E      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIML--PNIDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---LARVAAIYRR 118
           ++ + IR   + P+I ++        +   + G DD + KP   +E+   +  V   Y  
Sbjct: 66  DVLKWIRKDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + +  +      + E   +P +E  +L YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ H+ +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQGGPNWQ-IETVWGVGYKFEV 227


>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S    N  E    L  S + D+  ++  L        
Sbjct: 5   ILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R     P+I I+        +   + G DD + KP   RE++ARV A  RR+  
Sbjct: 63  TVCRKLRESISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S    +            +  +  +     EV  L  RE  ++++L    G+  ++  + 
Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+  + ++R+K+  +      + +KR +GY  + 
Sbjct: 183 EKVWG-YEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGYYFNK 230


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E     +             D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++ 
Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLEE 235


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        ++G  +E     E       +   D+  ++          + 
Sbjct: 7   LVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVM--MPKMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
           + + IR  S+VP+I ++        +   + G DD + KP   RE++AR+      +   
Sbjct: 65  VCQEIRKVSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRVGTE 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K   +  +   + +    R+  V+ +   L  +E  +L  L  + G+  ++ Q+   ++
Sbjct: 125 EKKEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V++H+++LR KLR     + + +   +GY  + 
Sbjct: 185 G-FDYYGDVRTVDTHVNRLRDKLRAAGAGNFIKTVWGVGYKFEV 227


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +   +      E    +    + D+  ++  L        E
Sbjct: 6   LIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIML--PKLSGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           + RI+R     P++ ++        +   + G DD V KP   RE+      + R   I 
Sbjct: 64  VCRILRKEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQIM 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   + G IRV  D     +   +  L  +E  +L +L  N+G   ++ Q+   
Sbjct: 124 ETKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G +D A +   V+ HI  LR+K+  +      + + R  GY ++
Sbjct: 184 VWG-YDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKLE 228


>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 95/233 (40%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ E    +   +  D+  ++  L   G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLML--PGMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + +R     P+I ++        +  F++GVDD V KP   RE++ RV         
Sbjct: 65  EVCQRVREFKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +      S++      + +  D       G+   L  +E  +L YL  +  K   + 
Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           ++   ++  ++   +   V++HI +LR+KL   +    + + +   +GY ++ 
Sbjct: 185 ELLKDVW-HYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKLEV 236


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +    +              +  ++  L   G    +
Sbjct: 8   LIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIML--PGIDGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 66  VCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEYK 125

Query: 123 NNRAETGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +          +          +  LP +E  +L +L +N  K   + Q+   ++G
Sbjct: 126 EVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD   +   V+ H+ ++R+K+  +     + +   +GY  + 
Sbjct: 186 -FDFYGDSRTVDVHVKRVREKIDLEGQPWQLKTVWGVGYKFEV 227


>gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
 gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
          Length = 229

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +           L    + D+  ++  L   G   +E
Sbjct: 9   LVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWML--PGTSGIE 66

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           + R I    A    P+I +S        +   ++G DD ++KP    E+    +      
Sbjct: 67  ICRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRS 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R      R     I + S+            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATMGERLIYNDILLDSETHKVFRGENELKLGPTEFRLLTTFMEKPGRVWSRDQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ H+ +LRK L +  G D + + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHVGRLRKVLGSHGGEDLIRTVRGAGYAL 228


>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 240

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ +           DV  ++  L   G   +
Sbjct: 9   ILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLML--PGRDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 67  EVCKGIREKKATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 126

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A       + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 127 TAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++HI +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFEV 237


>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 224

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++E  +       +      D+  ++  L   G   L
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLML--PGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +RA S VP+I ++   ++   +   ++G DD + KP    E+    RV    R+ 
Sbjct: 62  EVARRLRAASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +      GP+ +     +  +      L  +E  +LE  M +  + + +  I+  ++G
Sbjct: 122 EDAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   E N++E ++  LR+KL        + + R +GY +
Sbjct: 182 -YNFGGESNIIEVYVRYLRQKLEAHGEPRLIHTVRGVGYIL 221


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S       E    +      D+  ++  L        
Sbjct: 4   ILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVML--PKMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R     P++ ++        +   + G DD V KP   RE++ARV A  RR  +
Sbjct: 62  TVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN            + +       E  G+   L  RE  +L++L+ANRG   ++  +   
Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 182 VWG-YEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYF 225


>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L    +   
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  DVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G       +      +       +  ++  L    G  V
Sbjct: 6   ILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +  R   A S +P+I I+        +   + G DD + KP   RE++ARV A+ RR  
Sbjct: 66  CKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRTA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +     G + +  D  +    GE   L  +E  +L+ L+ NRG+ + +  +   I+
Sbjct: 126 LKPVDKCYVFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           G ++   E   V+ HI  LR+K+ +       +++ R +GY  +
Sbjct: 186 G-YEYVGETRTVDVHIRHLRQKIEDFDKKPKYIETIRGIGYRFN 228


>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F D G  +         E L ++   D + ++  L   G    
Sbjct: 3   ILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIML--PGLDGR 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R ++A   +P+I ++     +     F+ G DD V KP    E+L R+ A+ RR + 
Sbjct: 61  ELCRRLKATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S          R+     +  ++G++F LP++E  +L  L +  G+   + ++   ++G 
Sbjct: 121 SAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FD   +E  V+ HI +LR +  +      + + R +GY+++ N
Sbjct: 180 FDFEGDERTVDVHIKRLRNRFDHPALT--IRTVRGVGYALEVN 220


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G ++   N  E    L  S + D   ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLML--PKMDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 63  EVCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF----------PLPRRERRILEYLMANRGKRVAK 170
                A                                L  +E  +L YL  N+G+ + +
Sbjct: 123 TLIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLEE 234


>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++  +     +G ++      E    L +  +  ++ ++       +   
Sbjct: 4   ILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVM--MPNKDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +  VP+I ++    L      F  G DD + KP   RE+L R+ A+ RR ++
Sbjct: 62  QLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +          +     + +  G+V  LP +E  +L  L +   +  ++ ++   I+G 
Sbjct: 122 VSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 -DFDGDDRTVDVHIKRLRERFADRSGDFRIRTVRGVGYKLE 221


>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ R          
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
 gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
          Length = 243

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 12  ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 70  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 129

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 130 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 190 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 240


>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E      SS   D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  EVCREVRHKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E   + V         +G    +P +E  +L +L ++  +   +
Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+     +    +   +GY  + 
Sbjct: 185 EQLLDNIWG-YEYVGDTRTVDVHIKRLREKIPGNTHWSL-STVWGIGYKFEV 234


>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 244

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E            ++   D+  ++      G   L
Sbjct: 15  ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDI--QMPGMDGL 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+            
Sbjct: 73  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+ ++          G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 133 YAVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVML--PKIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+ +           +  +  + +  G++  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SSAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +          E    +    + ++  ++  L   G    
Sbjct: 7   ILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +RA SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E   + V          G    +P +E  +L +L A+  +   +
Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHNSWA-ITTVWGIGYKFEV 234


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E    +  +   D+  ++  L   G    
Sbjct: 30  ILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIML--PGMDGF 87

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R+       P++ +S        +   + G DD + KP   RE++AR+ A++RR
Sbjct: 88  ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147

Query: 119 LKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++S    E  P +       +  +  + +V  +   L   E  +L +L  N GK  ++ 
Sbjct: 148 IQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 208 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256


>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +   +    +      L +    D+  ++  L        E
Sbjct: 7   LVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLML--PDIDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R I++ S +P+I +S        +  F  G+DD   KP    E++ R+ A+ RR K  
Sbjct: 65  VCRRIKSRSDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKGC 124

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++       I +    R   V G    L  +E  +L  L +   +  ++ Q+   I
Sbjct: 125 KEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +       +EN V  HI +LR+K+  +    + + +   +GY  +
Sbjct: 185 WDSS-YYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGYKFE 228


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVML--PHMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + IR  S+ P+I ++        +   + G DD + KP   +E++AR+      Y  
Sbjct: 66  DVLKWIRKESETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  +   + +  +      +     +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKENEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGGPNWQ-IETVWGVGYKFEV 227


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +           L  +   D+  ++  L       L
Sbjct: 5   LLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLML--PEMDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           ++ + +R      P++ ++        +   + G DD + KP   R            + 
Sbjct: 63  DVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRVG 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                +     S +    G + ++ D  +  ++G+   L  +E  +L YL  ++G+ + +
Sbjct: 123 HAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 DQLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEE 234


>gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium
           variabile DSM 44702]
          Length = 224

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G S               +   D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR+  
Sbjct: 63  DVCRAVRDFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKELVARVRARLRRIPE 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      G V  L   E  +L  L +   +  ++ ++   ++G 
Sbjct: 123 ETPDTATVGDVTIDFGGHQVTRDGAVIQLTPIEFELLGTLASRPRQVFSREELLERVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +  +  +V  HI +LR K+  +      + + R +GY 
Sbjct: 182 YRKNSDTRLVNVHIQRLRSKVEKDPDNPVIIQTVRGVGYK 221


>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ R          
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
 gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
          Length = 238

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++      G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV         
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDINL--PDVIGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
            L + +++ + V ++ ++        +  F  G DD + KP         + A +     
Sbjct: 64  NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +  PL   E  +L +L ++ G+   + ++   +
Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  +
Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227


>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
          Length = 234

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++     F  +G  +              S + D+  ++          +
Sbjct: 8   ILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIM--MPVLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ + +R  S +P+I ++        +   + G DD + KP + RE++AR       A  
Sbjct: 66  EVCKQVRKMSDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAGT 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  K   +R     + +  D       G       +E  +L  L +N GK  ++ Q+   
Sbjct: 126 QEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLET 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           I+G +    +   V++HI ++R+KL         + +   +GY  +
Sbjct: 186 IWG-YSYYGDTRTVDTHIKRIRQKLNIPPDSKWDITTIWGVGYKFE 230


>gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 249

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++  +         ++   D+  ++  L   G   L
Sbjct: 17  ILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLML--PGMDGL 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119
           E+ R +R H  VP+I ++        +   + G DD V KP   RE  +         R 
Sbjct: 75  EVCRRMRGHGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +R     + V    R     G    L  RE  +L + + + G+   +  +   ++G
Sbjct: 135 AAPGHRLGAAGLAVDPAARRATKNGSELALTLREFDLLSFFLRHPGRAFGREDLMREVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                 + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 195 WD--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 235


>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 230

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 98/227 (43%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVML--PKLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +         + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SAAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +     + + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G      +  +  + +      D+  ++  L       +
Sbjct: 26  ILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIML--PSMDGI 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ + IR   + P+I ++        +   + G DD + KP   +E    +  V   +  
Sbjct: 84  DVLKWIRKEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS    +   + +  D       G+   +P +E  +L YL +N+ +   + Q+   ++
Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL     +  +++   +GY  + 
Sbjct: 204 G-YDYPGDSRTVDVHIKRLREKLEEGSNWQ-IETVWGVGYKFEV 245


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 4/224 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   +                 +  S     ++       
Sbjct: 8   ILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            L R IR+ S  P+I I+        L  F+ G DD + KP   RE+ ARV A       
Sbjct: 68  ALCREIRSFSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRANP 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   TG I++  +GR+  V GE   L  +E  +L +L+ N+GK +++  I   ++ 
Sbjct: 128 VQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKVWD 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   ++  V++HI KLR+KL  K G + + +   +GY  + N
Sbjct: 188 -YDYFGDQRTVDTHIKKLREKLGEKAGNE-IKTIWGVGYKFEVN 229


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    S      +      D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCRSLRQRSKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRRRGDA 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +     P+R+  D     V+GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ HI +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGYKFE 225


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G ++   N  E      ++ R +   ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLML--PKLDGVE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           + + +R      P++ ++        +   + G DD + KP   RE+      + R    
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + ++   G +++F D  +    GE   L  +E  +L YL  ++G+ + + Q+ S
Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           A++  +D A +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 184 AVW-NYDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLEE 230


>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +           G ++   N       L +  + D+  ++  L       +
Sbjct: 4   ILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPM--LDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R IR  +  P++ ++     +  +   DSG DD + KP   RE+++RV         
Sbjct: 62  EVCRRIRTWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAGL 121

Query: 114 ----------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                             S      GP+ +    R   V  +   L  +E  +L  +   
Sbjct: 122 YSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAKA 181

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +   +  + + ++G +    +   V+ HI  LRKKL +       + +   +GY  
Sbjct: 182 PDRVFTRETLLNQVWG-YSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGYKF 238


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++  G      ++G  +E     E    L    + D+  ++          L
Sbjct: 11  ILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLM--MPKIDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +  F+ G DD + KP +  E+ ARV A+ RR   
Sbjct: 69  QACMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSGA 128

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G IR+  + R     G    L  +E  ++E LM N G+  ++  + + 
Sbjct: 129 AVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLNV 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ H+ +LR+KL  +      + +K  +GY +
Sbjct: 189 VWG-YEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYL 232


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E      ++   D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR +S VP+I +S        +   + G DD + KP   +E++ARV A+ RR KV
Sbjct: 65  QVCREIRHNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             +          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHPQWSL-STVWGIGYKFEV 230


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  ++   +      L+   ++D + +   L+       
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREA--LEKFQKQDYALLIVDLMMPEIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ R +R  S +P+I ++        +  F+ G DD + KP   +E++ARV         
Sbjct: 62  KVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRG 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S++    GP+++  D     +  E  P   RE  +L +L  N  +  ++ Q+   +
Sbjct: 122 NTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++H+ K+R+KL +      + +   +GY  D
Sbjct: 182 WG-YDFYGDARTVDTHVKKIREKLADPKVRSMLATVWGVGYKFD 224


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G ++E     E         + D+  ++  L       +
Sbjct: 5   LLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLML--PKMDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R      P++ ++        +   + G DD + KP   RE            +
Sbjct: 63  EVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + A     +    R   G +++  D  +     E   L  +E  +L YL   +G+ + + 
Sbjct: 123 IIAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLEE 233


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     +    + SS   D+  ++  L        
Sbjct: 7   ILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLML--PVIDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + + IR     P+I ++        +  F+ G DD V KP   RE+ ARV      +  
Sbjct: 65  TVCKKIREKYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +    R  +V G+   L  +E  +L +L  N+GK   + ++   +
Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V++HI +LR+KL        +++   +GY  + 
Sbjct: 185 WG-YDFYGSLRTVDTHIKQLREKLGRSKAASYINTVWGIGYKFEV 228


>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E            ++   D+  ++      G   L
Sbjct: 15  ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDI--QMPGMDGL 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+            
Sbjct: 73  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+ ++          G +R+    R+         L R E  +LE  +A+  + + + Q
Sbjct: 133 YAVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQ 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEASGEPRLVHTVRGVGYVL 239


>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 224

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++         +G ++           L      D+  I   ++  G    
Sbjct: 6   ILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNN-DIDLIILDVMMPGYDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP+I ++        L  FD G D+ + KP   + + AR+ A+ RR++ 
Sbjct: 65  TVCREIRKSSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRRVQN 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        + +   GR   V GE   L  +E  +L YL  N G+ +++ QI +A++  +
Sbjct: 125 NRTVRSFDGLEIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAVWD-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   V++HI KLR KL  K     + + R LGY  + 
Sbjct: 184 DYFGDVRTVDTHIKKLRLKLGEKSY--LIQTVRGLGYRFEV 222


>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 238

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++     +       +   DV  ++       +  +
Sbjct: 7   ILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIM--MPEKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + +R     P+I ++        +  F+ G DD + KP   RE              
Sbjct: 65  EVCKELRKEKDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRRVST 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S N      + +  D        +   L  +E  +L +L     K   + Q
Sbjct: 125 KTYQEVDTSSKNMLVFPHLTIDHDAHRVAADNQEVSLTPKEYELLCFLANAPDKVFNREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +K     + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNTVSKEAAKMIVTVWGVGYKFEV 235


>gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDVNL--PDVIGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
            L + +++ + V ++ ++        +  F  G DD + KP         + A +     
Sbjct: 64  NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +  PL   E  +L +L ++ G+   + ++   +
Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  +
Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227


>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 247

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++          L +    D+  ++  L   G   +
Sbjct: 18  ILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRML--PGLDGV 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R    VP+I ++   +    +   + G DD + KP   RE    +  V     +
Sbjct: 76  EVCRRLRQTMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRRSVQ 135

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +     +    R     G    L  RE  +L + +    +  ++ ++  A++
Sbjct: 136 EFSPEPAVQVAGFELNPAARTVTHHGSPLALTIREFDLLAFFLRRPNQVFSREELIRAVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G      + + V  H+ +LR+K+  +      + +   +GY +D
Sbjct: 196 GWD--FGDLSTVTVHVRRLREKIEADPTRPALLKTVWGVGYRLD 237


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E               ++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 MAAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++ 
Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 235


>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
 gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
          Length = 247

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +           D+  ++      G+  +
Sbjct: 16  ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIM--MPGKDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 74  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + +   + +      + + +D       G+   L  +E  +L +L     K   + Q
Sbjct: 134 TTFFTQDTTTKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  K       + +   +GY  + 
Sbjct: 194 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFEV 244


>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++         G  +           L  + + D+  ++      G   L
Sbjct: 6   ILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLM--MPGMDGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           E+ R I+   + S++P+I ++        +   + G DD + KP   R     I A +  
Sbjct: 64  EVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R   +    E   +R+  +     V GE   L   E ++L  L++  GK   +  + 
Sbjct: 124 AGGREPKAPKAWEREGLRIDFEAHQITVDGEEATLTATEFKLLTVLISGSGKVQTRDNLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++           V++H+ +LR+KL      + +++ R +GY  
Sbjct: 184 DTVWDTH-FEGYSRTVDTHVRRLRQKLGPY--AEWIETVRGVGYRF 226


>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 239

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G S+E   +         + +  +  ++  L        
Sbjct: 4   ILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNL--PDVSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           +L + ++  + V ++ ++   +    L  F  G DD + KP        R          
Sbjct: 62  DLCQQMQKETGVYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRRGRT 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    S        + +    R+         L   E  +L  +  + G+   ++++   
Sbjct: 122 RTETGSAPVLTFPSLVIDPTTREVIRDRRPINLTALEFDLLYAMARHPGRVWRRSELIQE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++  F+   +E VV+ HI ++RKKL  +    + + + R +GY  +
Sbjct: 182 VWD-FNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFE 226


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +  G       +G  +   +          +   D+  ++  L   G   L
Sbjct: 4   ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLML--PGVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA    P+I ++        +   + G DD + KP + RE++AR+ A+ RR + 
Sbjct: 62  TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ +   G + V         R  EV G    L  RE  +LE L  + G    + ++   
Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G +D A +E  V+ H+ ++R+KL         + +K  +GY ++
Sbjct: 182 VWG-YDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLE 226


>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 244

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E            ++   D+  ++      G   L
Sbjct: 15  ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDI--QMPGMDGL 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+            
Sbjct: 73  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+  +          G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 133 YAVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 66  ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 123

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 124 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 244 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 292


>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + ++  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ R          
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIHNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S+VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  TVCKKVREFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N            +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 QSNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPN 229


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E     +             D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++ 
Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 235


>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 229

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+        + G  +           +    + D+  ++           
Sbjct: 6   ILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVM--MPKLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  +  R     P+I ++   +    +   + G DD V KP    E++ARV A+ RR   
Sbjct: 64  QFMQTFRKRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSP 123

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +              R   V      L   E  +L  LM   G+  ++ Q+   +
Sbjct: 124 DALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            G  D    E  ++ HI  LRKKL  +      V++   +GY 
Sbjct: 184 QGN-DYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGYR 225


>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
 gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  LV+ G     G  G  +    + E       SA  ++  ++  L   G    
Sbjct: 4   ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IRA   VP+I ++        +    +G DD V KP     + AR+ A+  R   
Sbjct: 62  EVCRGIRAAGPVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAAS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       +R+ +       +GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 SPDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            D   +  +V++ + +LR K+  +    + V + R  GY  
Sbjct: 181 HDYLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGYRF 221


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  LE          +    +  +  ++  +   G    
Sbjct: 6   ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMI--PGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           EL R+IRA S VP++ ++   S    ++  ++G DD ++KP            L R + +
Sbjct: 64  ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + +F +       G       +E  +  +L+ NR +  ++ Q+  
Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G +D       V+ HIS LR+K+  +      + + R  GY  + 
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIEVDPSKPRHLITVRGTGYKFEE 230


>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   ++  ++  L    +   
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    +  +   D+  ++  L       L 
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLML--PKVDGLS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGKP 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +          + R   + G+   L  +E  +LE L+ N GK  ++  +   
Sbjct: 124 AAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLDT 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYF 227


>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 236

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G +               S + DV  ++  L   G   L
Sbjct: 3   ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLML--PGLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110
           E+   IR         ++ ++        +    +G DD + KP    E        +  
Sbjct: 61  EVCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +    + L            +  +  +    + E   L   E  +L    +  G+   +
Sbjct: 121 SLRHSGQSLVYRTQHFTVDVDQHTASRQLESGESEPLDLTTLEFNLLATFTSQPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           TQ+   ++G  D   +E VV++H+++LRKK+  +      + +   +GY  + N
Sbjct: 181 TQLIDKLWGN-DFFGDERVVDTHVARLRKKIEPDPSNPTFIKTVIGVGYKFEDN 233


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  ++   +      L+   ++D + +   L+       
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREA--LEKFQKQDYALLIVDLMMPEIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ R +R  S +P+I ++        +  F+ G DD + KP   +E++ARV         
Sbjct: 62  KVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRG 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S++    GP+++  D     +  E  P   RE  +L +L  N  +  ++ Q+   +
Sbjct: 122 NTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++H+ K+R+KL +      + +   +GY  D
Sbjct: 182 WG-YDFYGDARTVDTHVKKIREKLADPKVRSMLATVWGVGYKFD 224


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +    +E     +             D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++ 
Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 235


>gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         DG  +      E    L      D+  ++  L   G   LE
Sbjct: 5   LVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVML--PGIDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
           + R +RA S   +I ++        L     G DD V KP   RE+ ARV          
Sbjct: 63  VLRRLRAVSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRRDRGG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +   GR+    G    L   E  +L  L    G+  ++ Q+   ++
Sbjct: 123 RTGEDVVLRFRGLSIDLAGREVHADGAPVALSSLEFDLLAALAGAPGRVFSRAQLLERVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           G +D   +E VV+ HI  LR +L +       + + R +GY  
Sbjct: 183 G-YDFYGDERVVDVHIRSLRSRLGDPAADPRLIATVRGVGYKF 224


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +          +G  +E     +  E     +  D+  ++  L   G   L
Sbjct: 26  ILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWML--PGVSGL 83

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E+ R IRA  +    P+I ++        +    +G DD + KP    E++ARV A    
Sbjct: 84  EICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRR 143

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R          G + +  +            L   E R+L++LM   G+  ++ Q+   
Sbjct: 144 SRPDRITGLLTAGDLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDG 203

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G   E ++E  V+ H+ +LRK L      DP+ + R  GYS D 
Sbjct: 204 VWGEAAE-IDERTVDVHVGRLRKALSIGEEQDPIRTVRGAGYSFDE 248


>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
           [Bacillus anthracis CI]
 gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 841

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 678

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV  + +R ++
Sbjct: 679 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKRYQI 738

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 739 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 797

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 798 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 839


>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + ++  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ R          
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++E          +      D+  ++  L   G   L
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLML--PGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +RA S VP+I ++   ++   +   ++G DD + KP    E+    RV    R+ 
Sbjct: 62  EVARRLRAASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +      GP+ +     +  +      L  +E  +LE  M +  + + +  I+  ++G
Sbjct: 122 EDTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   E N++E ++  LR+KL  +     + + R +GY +
Sbjct: 182 -YNFGGESNIIEVYVRYLRQKLEARGEPRLIHTVRGVGYIL 221


>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 234

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A     G  +    +      +      D+  ++  L   G   +
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLML--PGMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+   +R  S V ++ ++        +     G DD + KP   RE++ARV       R 
Sbjct: 63  EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V ++      + +  D R+    G++  L   E  +L  L  N  + +++  +   ++
Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D    + VV+ ++S++R+K+    G + + + R +GY  
Sbjct: 183 GA-DFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E           DV  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVML--PRMNGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S +P+I ++        +   + G DD + KP +        + + R     
Sbjct: 64  VCQQIREFSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTRK 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++     G +++ S+ R   +  +   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 ASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYF 227


>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
 gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  +    S E    L +    D+  ++  L   G   LE
Sbjct: 9   LVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLML--PGIDGLE 66

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR     P +I ++        +   + G DD + KP +  E++AR+ A+ RR   
Sbjct: 67  VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         + +         +   L   E  +L+  M N GK + + ++ + I+
Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           G  D   +   ++ HI +LR+K+ +       + +    GY 
Sbjct: 187 GE-DYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYR 227


>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  +      E    +      D+  ++  L       L+
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLML--PKMNGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARKP 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               E   +          D R   +      L  +E  +L+ L+ N  K  ++  + + 
Sbjct: 124 EKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+ +       V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYF 227


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++E  +              D+  ++  L   G    
Sbjct: 10  ILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIML--PGMDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +RA S VP+I ++   ++   +   +SG DD + KP    E    +  +   +  
Sbjct: 68  EVCRRLRAGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + + +  R+  + G    L  +E  +LE  M + G+ + +  I+  ++
Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E N++E ++  LR+KL        + + R  GY +
Sbjct: 188 G-YDFGGESNIIEVYVRYLRQKLEESGEGRMLHTVRGAGYIL 228


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    + E           D+  ++  L        
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S                + G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 SITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    + E           D+  ++  L        
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S                + G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 SITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++       R A  
Sbjct: 65  EVCSKIREFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +     +     G + V          G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 228

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G +       +    L  S + D+  ++  L       L
Sbjct: 8   ILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLML--PKMDGL 65

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIY 116
            + R +   S   ++P+I ++        +  F+ G DD V KP + RE  +  R     
Sbjct: 66  AVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRR 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +  SN       + V        V G+   L   E R++E L+ N G+   + ++ +A
Sbjct: 126 QVMVESNPVLTRHGVSVDPAAHKVTVLGQDVELTATEFRLIEDLLRNAGRVRTREELLAA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G +        V++HI +LR KL +    + +++ R +GY 
Sbjct: 186 VWG-YQFEGYARTVDTHIRRLRNKLGD--AAEIIETVRGVGYR 225


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S+   +  E    L      D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLML--PKIDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
           E+ + IR     +P++ ++        +   + G DD + KP   RE++ARV AI     
Sbjct: 63  EVCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQ 122

Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                         +  + G ++VF +  +      +  L  +E  +L YL  NRG+ + 
Sbjct: 123 AVIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 RDQLLSAVW-NYDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLEE 235


>gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 231

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE                  + +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLKAHTVKKKGVVVNLTPNEFKILKLLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G S       E    L      D+  ++  L        
Sbjct: 5   ILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVML--PKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
            + RI+R     P++ ++        +   + G DD V KP   RE++         +  
Sbjct: 63  TVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N      + +       E  G    L  RE  +L++L+ANRG   ++  +   
Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 VWG-YEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYF 226


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + ++++D A +          +G  +      E    L S  + D+  ++  L    G +
Sbjct: 6   LILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLSGIE 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V    R   A  ++P+I ++        +   ++G DD + KP    E++AR+ A+ RR+
Sbjct: 66  VCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRV 125

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G I +               L   E R+L++ M + G   ++ ++ +A+
Sbjct: 126 QPVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELLNAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK L      D + + R  GY++D
Sbjct: 186 WG-PDIYVEPRTVDVHIRRLRKALNGDNDADIIRTVRAAGYALD 228


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E       + + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLML--PKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   D G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E              + R   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYF 227


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D A +          +G  +      E    + +  + D+  ++  L    G ++ 
Sbjct: 15  LVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEIC 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
              R   A  ++P+I ++        +   ++G DD + KP    E++ARV A     + 
Sbjct: 75  RQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRAQP 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +          G+   L   E R+L++ + + G   ++ ++  A++G
Sbjct: 135 VSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLDAVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK L      D + + R  GY++D
Sbjct: 195 -PDIYVEPRTVDVHIRRLRKALNCDTEADIIRTVRAAGYALD 235


>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 239

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  +       L      D   ++       +  +
Sbjct: 7   ILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIM--MPEKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCQAIREKKATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRTST 124

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++                + +  D            L  +E  +L +L  +  K   + 
Sbjct: 125 QSSYIPAEATSKDLLVFPHLTIDHDAHKVLADDMEVNLTPKEYELLHFLAKSPEKVFDRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
           Q+   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 QLLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSEQSAKMIVTVWGVGYKFEV 236


>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 236

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E    +    + ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110
            + R +RA S VP+I +S    +   +   + G DD + KP   +E+             
Sbjct: 65  SVCREMRAQSPVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                  +     +  E   + V          G    +P +E  +L +L ++  +   +
Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHASWAL-TTVWGIGYKFEV 234


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  ++     +  E   S    D+  ++  L   G   L
Sbjct: 30  ILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWML--PGVSGL 87

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E+ R +RA      +P+I ++        +     G DD V KP    E++ARV +    
Sbjct: 88  EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R          G + +          G    L   E R+LE+LM   G+  ++ Q+  +
Sbjct: 148 ARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDS 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++GL  E ++E  V+ H+ +LRK L      DP+ + R  GYS D 
Sbjct: 208 VWGLSAE-IDERTVDVHVGRLRKALTAPGERDPIRTVRGAGYSFDE 252


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++  G       +G  +E     E    L  S   D+  ++          L
Sbjct: 14  ILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLM--MPKIDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           +    IR  S VP+I ++        +  F+ G DD + KP +  E+ AR       A  
Sbjct: 72  QACMRIREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAGM 131

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K    R   G I + +D R          L  +E  ++E LM N G+  ++  + + 
Sbjct: 132 AAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLNV 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++ A +   V+ H+ +LR+KL  +    + + +K  +GY  
Sbjct: 192 VWG-YEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYF 235


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD V KP    E+LARV +    
Sbjct: 63  ELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G I +  D       G    L   E R+LE+ + + G+  ++ Q+ ++
Sbjct: 123 ASPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLNS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D 
Sbjct: 183 VWGR-DVYIDERTVDVHIGRLRKLLNPDGEADPIRTVRGAGYALDE 227


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E         + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLML--PKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   D G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E              + R   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYF 227


>gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 237

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G S E             + + D+  ++  L   G   L
Sbjct: 3   ILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLML--PGLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110
           E+   IR         ++ ++        +    +G DD + KP   RE        +  
Sbjct: 61  EVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +    +              +  +  +      E   L   E  +L  L++  G+   +
Sbjct: 121 SLRHGGQSQVYRTPHFTVDLDQHLAYRQLDPQTSEPLDLSPLEFNLLVTLVSYPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           TQ+   ++G  D   +E VV++HI++LRKK+  +      + +    GY  +
Sbjct: 181 TQLIDKLWG-DDFFGDERVVDTHIARLRKKIEPDPTHPQFIKTVVGTGYKFE 231


>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 239

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 18/235 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +     F  DG  ++  N  E           +V  ++  L   G+   E
Sbjct: 5   LVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLML--PGKDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------------- 109
           + R IR  S VP++ ++        +   + G DD ++KP   +E++             
Sbjct: 63  VCREIRKTSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEAA 122

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              A           +     + +          G    +P +E  +L +L ++  +   
Sbjct: 123 CPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVFN 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDW 222
           + Q+   ++G +D   E   V+ HI ++R+K+ +        + +   +GY  + 
Sbjct: 183 REQLLGQVWG-YDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGYKFEV 236


>gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2]
 gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G   +   +S E    +       +  ++      G+  
Sbjct: 6   ILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVM--MPGQTG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR H+  P+  ++   S    L  F  G DD + KP +  E++AR+ A  +R  
Sbjct: 64  FDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTY 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    A       +   R                     +  ++L+Y   +  + ++K Q
Sbjct: 124 IHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           I+  ++G+     + N V  HI KLR+K+  +    + + + R LGY    N
Sbjct: 184 IYEKVWGVPSY-GDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPN 234


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    + S    D+  ++  L        
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVML--PKLDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 84  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 143

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE   +               ++ R      E   L   E  +LE L    G+ V 
Sbjct: 144 GSANAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 203

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 204 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 254


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +      E    +      D+  ++  L   G    
Sbjct: 6   ILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIML--PGMDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111
           EL R +R    H   P+I +S        +   + G DD + KP          R I  R
Sbjct: 64  ELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +  +    +     + + ++  +  V+G++  L   E  +L +L  N GK  ++ 
Sbjct: 124 IQQSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD V KP    E+LARV      
Sbjct: 63  ELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G I +  D       G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ HI +LRK +      DP+ + R  GY++D 
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLINPGGEPDPIRTVRGAGYALDE 227


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G   E  +       L  +AR D+  ++  L       LE
Sbjct: 15  LVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIML--PEMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R IR+    P+I ++        L   + G DD V KP   RE++ARV          
Sbjct: 73  VLRRIRSSGHTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVVLA 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        GP+ + S+     + G    L   E R+LE L    GK  ++ ++  A   
Sbjct: 133 EAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAA-- 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D    E VV+ H+  LR+KL    G   +++ R +GY +
Sbjct: 191 LPDSDALERVVDVHLKNLRRKLEAAGGAGLLETVRGVGYRL 231


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E      +S +  +  ++  L       +
Sbjct: 5   ILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLML--PKLDGV 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    + P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  DVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTE 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    AE+          +F +  +  + G+   L  +E  +L YL  ++G+ + + Q+ 
Sbjct: 123 IVQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           SA++  ++ A +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 SAVW-NYEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLEE 230


>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 277

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    L      D+  ++  L        
Sbjct: 34  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVML--PKLDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 92  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 151

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE   +               ++ R      E   L   E  +LE L    G+ V 
Sbjct: 152 GSASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 211

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     + +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 212 RAEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 262


>gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 257

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                    R  +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237


>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 238

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 82/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++     +    +          ++      G+  +
Sbjct: 7   ILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIM--MPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + +      P+I ++        ++ F+ G DD + KP   RE           +  
Sbjct: 65  EVCQELHEKKMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRSLQ 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      I + +D       G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TGFLNADTKAKDIVVFPHITIDNDAHRVTADGKEVNLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 LLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSENAAKMIVTVWGVGYKFEV 235


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G  +    +      L      D+  ++  L   G    
Sbjct: 3   ILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLML--PGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ + IR  S VP+I ++    L+  ++ F+ G DD ++KP   RE++AR          
Sbjct: 61  EICKEIRKISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTDI 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++   +    + + +   +     EV PL   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRGQLVEI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + G  D   ++ V+++HI KLR+KL         + +   +GY  +
Sbjct: 181 VQG-HDFGGDDRVIDAHIKKLRQKLEKVPSDPKIILTVYGVGYKFN 225


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      +  + L  S + D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLML--PKLDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122

Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                AE                     +   + E+  L  +E  +L YL  N+ + + +
Sbjct: 123 FVPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLEE 234


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA S     P+I ++        +    +G DD V KP    E+LARV +    
Sbjct: 63  ELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G I +  D       G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D 
Sbjct: 183 VWGR-DVYIDERTVDVHIGRLRKLLNPDGELDPIRTVRGAGYALDE 227


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G ++E     E         + D+  ++  L       +
Sbjct: 5   LLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLML--PKMDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R      P++ ++        +   + G DD + KP   RE            +
Sbjct: 63  EVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + A     +    R   G +++  D  +     E   L  +E  +L YL   +G+ + + 
Sbjct: 123 IIAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           Q+ SA++  +D A +  +V+ HIS LR+K+ +       + + R LGY ++ 
Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLEE 233


>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G ++      E       S   D+  ++  L        
Sbjct: 12  ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVML--PKMDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            + R +RA S VP+I +S   S+   +   D G DD + KP   +E+ AR+  I      
Sbjct: 70  AVCRRLRAESCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRRVGS 129

Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  R +         G + V ++ R      E   L   E  +LE L  + G  V 
Sbjct: 130 GSATVEPREIPSGQGVMRVGDLVVDTNRRQVNRGTERIALTYTEFSLLELLFRDPGHVVP 189

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 190 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPEMILTVRGIGY 240


>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    L  + + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLML--PKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP++ ++        +   + G DD + KP +        + + R A + 
Sbjct: 64  VCQQIREFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHLE 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +      + G +++  + R   +  +   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 AKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYF 227


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +    E     E    +    R  +  ++  L   G    
Sbjct: 7   ILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREMRSASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E   + V          G    +P +E  +L +L ++  +   +
Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHAGWAL-TTVWGIGYKFEV 234


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++     F   G ++                + D+  ++           E
Sbjct: 7   LIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIM--MPVLDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S VP+I ++        +   + G DD V KP + +E++ARV AI RR    
Sbjct: 65  VCQQIRKYSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTAAP 124

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + +          G+   L  +ER +L  L ++ GK +++ Q+   +
Sbjct: 125 QQYTQADILRFPELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLSREQLLELV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +  +    +   V++H+ +LRKKL         + +   +GY  + 
Sbjct: 185 WD-YSYCGDTRTVDTHVKRLRKKLGVGPHSPWDIKTVWGIGYKFEV 229


>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
 gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V       F  +G +    +S +      +    D+  ++  L       +
Sbjct: 3   ILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWML--PVMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR + 
Sbjct: 61  TLCRKIRELSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRRYQA 120

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +++ E                         +  L  +E  +L Y + N  +  ++ Q+ 
Sbjct: 121 DSSKQEEANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LRKK+        + +   +GY  D 
Sbjct: 181 DRVWG-YQFYGDERTVDVHIKRLRKKIGTTSQP-FIHTVWGIGYKFDE 226


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +   + E       + + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E+           +V
Sbjct: 65  QVCREIRAKSVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +      E   + +          G+   +P +E  +L  L A+  +   + Q
Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  +
Sbjct: 185 LLDRIWG-YEYIGDTRTVDVHIKRLREKIKDHPHWSL-STVWGIGYKFE 231


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 273

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +E  +  +           D+  ++  L   G   +
Sbjct: 43  ILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLML--PGTDGI 100

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R   ++P+I ++   S    +   + G DD V KP  +RE        L RV  
Sbjct: 101 EICRKVREKYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    ++ + G + +           +   L  RE  +L Y+  +  + + +  + 
Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +++G +D   +   V+  I +LR+K+  +      + ++R +GY
Sbjct: 221 QSVWG-YDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGY 264


>gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 231

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +        DG  +E             S   D+  ++  L       L
Sbjct: 5   ILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLML--PKMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    VP+I ++        +   ++G DD V KP   RE+  RV ++ RR + 
Sbjct: 63  QVCRKLRERWPVPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRARG 122

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++  A       G + V     +  +      L  RE  +L +LM N  +  +++ +   
Sbjct: 123 ASTPAGTGVLRDGTLVVDVGAHEVRLGDGQIMLTAREFDLLAHLMRNPRQAFSRSALLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      + + V  H+ +LR+K+  +      + +   +GY  +
Sbjct: 183 VWGW--SFGDSSTVTVHVRRLREKIEPDPTAPRRIVTVWGVGYRYE 226


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +  +++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++          G  +      E      ++   D+  ++  L        
Sbjct: 4   ILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIML--PTIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---------- 111
           ++ R IR  S VP++ ++        +   + G DD V KP   RE++AR          
Sbjct: 62  DVCRHIRRSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRREL 121

Query: 112 -VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               +           E G +R+          G    L  +E  +L YL  +RG     
Sbjct: 122 LEQELASNPDGREEVFEIGTLRIDPAAYRVTRNGREVQLTPKEMDLLVYLARHRGNVCPT 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +I  A++G +D   +   V  HI  LR+KL         +++ R +GY +
Sbjct: 182 RRILEAVWG-YDYYGDNRTVAVHIHGLREKLEEDPRQPRLIETVRGVGYRL 231


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +   ++   + E    L    + ++  ++          +E
Sbjct: 7   LIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLM--MPKVDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114
           + R +R  + VP++ ++        +     G DD + KP    E+           +  
Sbjct: 65  VCRRLRNKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFLVL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R    N   +   I +          GE   L  +E ++L++   + G+   KTQ+F
Sbjct: 125 GSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   LGY  
Sbjct: 185 RNVWD-GNYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGYKF 230


>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 234

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVL 61
           ++++D   V+D        +G+  E     E    L   S   D+  ++  L   G   +
Sbjct: 5   LIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVML--PGMDGI 62

Query: 62  ELPRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LAR 111
            + R +R     H  VP++ ++      + +   + G DD + KP   R++        R
Sbjct: 63  SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +  +      + E   + +    R    +GE   L  RE  +L  L +N G+  ++ 
Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           QI   ++G  +   E    + HI  LR+K+  +      + + R +GY  
Sbjct: 183 QIMDHLWG-GEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G   +  N  +  E +    + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIML--PNIDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           ++ + IR   + P+I ++        +   + G DD + KP         +  V   Y  
Sbjct: 66  DVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + +  +      + +   +P +E  +L YL +N+ +   + Q+   ++
Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ H+ +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQGGPNWQ-IETVWGVGYKFEV 227


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      S  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 231

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         E    +      D+  ++  L        
Sbjct: 5   ILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVML--PKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + + +R    VP++ ++        +   + G DD + KP   R     + A +  +  
Sbjct: 63  TVLKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      +++       E   +   L  RE  +L +L+ N+G   ++  +   +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYF 225


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 230

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +              + + D+  ++  L        
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVML--PEVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +           +          G+  PL  RE ++L  L A+ G+   + Q+  
Sbjct: 123 VLREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            ++G  D   +   V+  I +LR+KL  +      V ++R +GY
Sbjct: 183 QVWG-SDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGY 225


>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         E    +      D+  ++  L        
Sbjct: 5   ILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVML--PKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + + +R    VP++ ++        +   + G DD + KP   R     + A +  +  
Sbjct: 63  TVLKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      +++       E   +   L  RE  +L +L+ N+G   ++  +   +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYF 225


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    L      D+  ++  L        
Sbjct: 14  ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVML--PKLDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A+I RR+  
Sbjct: 72  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGR 131

Query: 122 SNNRAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE   +             V ++ R      E   L   E  +LE L    G+ V 
Sbjct: 132 GSATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 191

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL       + + + R +GY
Sbjct: 192 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 99/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  ++ E       + + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRAKSQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E   + +          G+   +P +E  +L +L A+  +   + Q
Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPGWGL-STVWGIGYKFEV 232


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGSAEKDENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVML--PHMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + IR   + P+I ++        +   + G DD + KP   +E++AR+      Y  
Sbjct: 66  DVLKWIRKECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  +   + +  +      +     +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGGPNWQ-IETVWGVGYKFEV 227


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   +    +   +G  +                  D+  ++  L   G    E
Sbjct: 5   LVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLML--PGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IRA S VP+I ++        +   + G DD V KP   RE    +  V       
Sbjct: 63  VCRQIRATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTEP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E GP+R+  +     V G    LP +E  +LE  + N G+ + + Q+   ++G
Sbjct: 123 DAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D   +   ++ H+ +LR KL  +      + + R LGY +D
Sbjct: 183 -SDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKLD 224


>gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 274

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +      G  G +++            ++   D+  ++  L   G   LE
Sbjct: 11  LVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLML--PGMDGLE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++     +  +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 69  VCRALRGRGPVPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRTG 128

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              I + +  R     G    L  RE  +L +L+ + G    + 
Sbjct: 129 PQVPGSSAPAPGGVAHRAGITLDALARRATRDGRELALTVREFDLLSFLLRHPGVAFTRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   ++G      + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 189 ELMREVWGWD--FGDLSTVTVHVRRLRGKVEDDPAAPRLIQTVWGIGYRFD 237


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
 gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
          Length = 238

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +                 ++  ++  L   G    
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVML--PGMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------------HHR 106
           ++   IR  S VP+I +S    +   +     G DD + KP                 + 
Sbjct: 64  QVCTEIRKQSNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRCNS 123

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                               E   + V        ++G+   +P +E  +L +L +   +
Sbjct: 124 RTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASRPNQ 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              + Q+   ++G ++   +   V+ HI +LR+KL +K  +  + +   +GY  + 
Sbjct: 184 VFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLTDKYNWS-IFTVWGIGYKFEV 237


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G S+                + D+  ++  L         
Sbjct: 5   LIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIML--PRLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI+R  S VP+I ++        +   + G DD + KP    E LARV AI RR +  
Sbjct: 63  VCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +           IRV +  R     G+   LP++E  +L  LM NRG  + +  +   +
Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   V+ HI  LR+K+  +      + + R +GY  +
Sbjct: 183 WGQ-DFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFE 226


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D   A    +G  +      E    +    R D+  ++           
Sbjct: 7   ILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLM--MPKLSGN 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ RIIR  S+ P+I ++    L   +   + G DD V KP   RE+    +        
Sbjct: 65  DVCRIIRQESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G + V  + R  ++ G+V  L   E  +L+ + AN G+  ++++I   + G
Sbjct: 125 RTFAPVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                  E  ++SHI  LR+K+         + +    GY ++
Sbjct: 185 DT-YEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRLE 226


>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 227

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G  +                  D+  ++  L   G    
Sbjct: 5   ILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P++ ++        +   ++G DD V KP   +E++ARV A  R  + 
Sbjct: 63  DVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S            +   G   + +G V  L   E  +L  L  +  K  ++ ++   ++G
Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKNSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 94/236 (39%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  ++          L    + ++  ++  L   G    
Sbjct: 5   ILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R     P++ ++        +   + G DD + KP   RE+LARV A+ RR+++
Sbjct: 63  ELCRRLRQEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122

Query: 122 SNNRAETGPIRVFSDGRDP---------------EVQGEVFPLPRRERRILEYLMANRGK 166
                +        +                    + G V  +  +E  +L +LM +RG+
Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +++  +   ++G +D   +   V+ HI  LR+K+  +      + + R  GY  +
Sbjct: 183 VLSRDYLLKELWG-WDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGYRFE 237


>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ R          
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTND 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ ++     E    +  +   D+  ++  L       +
Sbjct: 5   ILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLML--PKIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI+RR   
Sbjct: 63  AVCQQVREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S +                     D R  ++ G    L  +E  ++E L +N GK  ++ 
Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            + + ++G +D   +   V+ H+ +LR+K+  N      + +K  +GY    N
Sbjct: 183 SLLNTVWG-YDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234


>gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 244

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G +++          L +  R D+  ++  L   G   L
Sbjct: 15  ILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLML--PGMDGL 72

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +R    ++VP+I ++        +   + G DD V KP   RE++ RV ++ RR 
Sbjct: 73  EVCRRLRAGEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRG 132

Query: 120 KVSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    GP      I +    R     G    L  RE  +L +LM + G+ + + ++
Sbjct: 133 GGGAGERRAGPELAAAGIVLDPGARRATKDGHELALTLREFDLLAHLMRHPGEAIGRERL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              ++G   E  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 193 MQDVWGW--EFGDLSTVTVHVRRLRGKIEDDPARPRLIQTVWGVGYRFD 239


>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A++++        +G ++           L +  + D+  ++  L    G  V
Sbjct: 4   ILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLDV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R  +  + +PLI +S    +   +   + G DD + KP   RE+LAR+ A  R  +
Sbjct: 64  CKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREER 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++            +                L  +E  +L   M    +  ++  +   
Sbjct: 124 RNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G +  + +   V+ HIS LR KL++      ++S R +GY +  N
Sbjct: 184 VWG-YTVSGDTRTVDVHISNLRSKLKSVS--PIIESVRGVGYRLAVN 227


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E         + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLML--PKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP++ ++        +   + G DD + KP +        + + R A   
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGSD 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K      + G +R+  +GR   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYF 227


>gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 239

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  ++G  +E     E           D+  I   ++       
Sbjct: 15  ILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAE----DMDLIILDVMMPKMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           +  R IR  +  P++ ++     Q     F SG DD + KP  + E+             
Sbjct: 71  KACRQIREVTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 130

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +      ++     + +  +    + + E   L   E +IL  L  +  K  +  ++
Sbjct: 131 YKGKEEPQEGDQIIMHDLIISRNSNQVKKKEEAVNLTEMEYQILLLLADHPKKIFSNQEL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + AI+         N +  HI  LRKKL  +      + +    GY  D
Sbjct: 191 YEAIWKGPYMYSANNTIMVHIRNLRKKLGVDPQNPVYIKTVWGKGYRFD 239


>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 251

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++      E         + D+  ++           
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 70  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEK 129

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++          + G IR+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 130 TSTSGIPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 190 EQVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 237


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +         G            + L    R D+  ++  L   G   L
Sbjct: 14  ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWML--PGVDGL 71

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118
            L  R  +     P++ ++        +     G DD               +       
Sbjct: 72  ALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                + +    + V  + R  ++ G    L  RE  +L  L  + G+  ++ ++   ++
Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G +D       ++ H+ KLR+KL  +      V +   +GY  
Sbjct: 192 G-YDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG  +      E        A  D+  ++  L       L
Sbjct: 5   ILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +SQ P+I ++      + +   + G DD + KP +  E+ AR+ A+ RR + 
Sbjct: 63  QVCQQIRLNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+   E   I++     +   +      E   L  +E  +L  L +N GK  ++ ++   
Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G ++   +   V+ HI +LR+K+  N    + + +K  +GY  
Sbjct: 183 IWG-YEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYF 226


>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
 gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
          Length = 239

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 13  ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKLSGE 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 71  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 130

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I                 +G V  L   E ++L  L+ N G+   + Q+  
Sbjct: 131 GKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 191 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 235


>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I                 +G++  +   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKMVTITPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 25/243 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A++ +         G  +              S R D+  ++  L   G   L
Sbjct: 5   ILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIML--PGMDGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R  ++    P++ ++        +   + G DD V KP   RE+LARV A+ RR
Sbjct: 63  EVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRR 122

Query: 119 LKVSNNRAETGPI------------------RVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                                          R+   GR    +G+   L  ++  +L YL
Sbjct: 123 SDYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYL 182

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           + NRG  + + Q+   ++G +D   +   V+ H+  LR+KL  +      + + R +GY 
Sbjct: 183 VRNRGTVLTRDQLLHNVWG-YDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYV 241

Query: 220 IDW 222
             W
Sbjct: 242 FRW 244


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ ++     E    +  S   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLML--PKMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           E+ + IR  S VP+I ++        +   + G DD + KP +        + + R    
Sbjct: 63  EVCQQIREFSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +K S  +   G + +  +GR   +      L  +E  +LE L+ +  K  ++ ++  
Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            I+G  D   +   V+ HI +LR+K+         + +K  +GY  
Sbjct: 183 IIWG-SDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYF 227


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       + G         +  +      + D+  ++  L       ++
Sbjct: 9   LVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIML--PHIDGVD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + + IR  S +P+I ++        +   + G DD + KP   +E    +  V   Y   
Sbjct: 67  VLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNVD 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V  +      + +   +P +E  +L YL  N+ +   + Q+   ++G
Sbjct: 127 NENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL     ++ +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKLEGGPNWE-IETVWGVGYKFEV 227


>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
          Length = 248

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D A +          +G  +   +  E            +  ++  L    G +V 
Sbjct: 24  LIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEVC 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
              R       +P+I ++        +   +SG DD + KP    E+    R        
Sbjct: 84  RQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRRASP 143

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++       + +               L   E R+L + M + G+  ++ Q+   ++G
Sbjct: 144 GMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDLVWG 203

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK +  +   D + + R  GY++D
Sbjct: 204 -HDVYVEPRTVDVHIRRLRKAMNEEDELDLIRTVRSAGYALD 244


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G +    +  E         + D+  ++           
Sbjct: 4   ILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIM--MPKLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
                +R  SQVP+I ++        +     G DD + KP    E++ARV A     + 
Sbjct: 62  RFCMHVRERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GPI +    R  +V G+   L  +E  +L   + +RG+   + Q+   ++G
Sbjct: 122 TDVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +         V++HI  LR KL        + +   +GY  D 
Sbjct: 182 IH-YVGSTRTVDTHIKTLRIKLGEAG--QYIQTVWGVGYKFDE 221


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++        +G  +      +      S  + D+  ++  L       +
Sbjct: 4   ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLML--PEIDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      + G + +  + R+ +V GE   L   E  +L YL+ NRGK +++ Q+ + 
Sbjct: 122 IPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLAN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   E   V++H+++LR+KL+       + +   +GY  + 
Sbjct: 182 VWG-YDYFGEARTVDTHVTRLREKLQE--AASYIKTVWGVGYKFEV 224


>gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 256

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   +    +G  +              + R D+  ++  L   G    
Sbjct: 23  ILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIML--PGMDGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110
           E+ R I+    V ++ ++        L     G DD + KP   RE+             
Sbjct: 81  EVCRRIQQDFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSRT 140

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               ++    +           +          GE   L  RE  +L  L    G+   +
Sbjct: 141 PGPRVHTHQPIERPALRFEQFTIDPGCYTVWRDGEAIILTPREFDLLYVLAEYAGRVCNR 200

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+   I+G  + A  + VV+ HI +LR+K+  +      + + R +GY +
Sbjct: 201 DQLLERIWG-SNFAGIDRVVDVHIKQLRRKIEVDPSNPQIIQTLRGVGYRL 250


>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 237

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         DG  +                  D+  ++  L       L
Sbjct: 8   ILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVML--PQLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S VP+I ++        +   + G DD + KP   RE  +RV A  RR ++
Sbjct: 66  EVCRRLRSRSSVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRRSEL 125

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S +            +R+  D R   ++GE       E  IL  L  + G+   +  + +
Sbjct: 126 SRSAERDGGSLDVHELRIDPDKRTVSLRGEAITTTFVEFEILLTLARSPGRVFTRDMLLA 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G      +   ++ HI  LR+K+  +    + + + R +GY  
Sbjct: 186 RVWGDSAY-RDPRTIDVHIRHLREKIERDAKEPEYLFTVRGVGYRF 230


>gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 8   ILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD V+KP   +E++ARV A  RR   
Sbjct: 66  DVCKAIRETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 125

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    +   +   G      G+   L   E  +L  L +   +  ++ ++   ++G
Sbjct: 126 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + ++ +  +V  HI +LR K+  +      + + R +GY 
Sbjct: 186 -YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 225


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D  ++    +       ++ +    L       +  ++          L
Sbjct: 8   ILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVM--MPEMDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
                IR  S VP+I ++        +     G DD + KP   R     I A +   +R
Sbjct: 66  TACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + + ++ R   V G+   L R+E  +L   + N  K  ++ Q+   I
Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  D       V++HI  LR KL    G   + +   +GY  + 
Sbjct: 186 WGA-DYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEE 227


>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 230

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +              + + D+  ++  L        
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVML--PEVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            +          G+  PL  RE ++L  L A+ G+   + Q+  
Sbjct: 123 VLREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            ++G  D   +   V+  I +LR+KL  +      V ++R +GY
Sbjct: 183 QVWG-SDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGY 225


>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE                    +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E           D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVML--PKVDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR  
Sbjct: 63  DVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRAD 122

Query: 121 VSNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +S+        +             +  +   + E   L  +E  +L YL  ++G+ + +
Sbjct: 123 ISSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
             + SA++  +D A +  +V+ HIS LR K+ +       + + R LGY ++ 
Sbjct: 183 DLLLSAVW-NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEE 234


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +     +G  +    S E         + D+  ++  L   G    
Sbjct: 9   ILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVML--PGMDGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ R++R     + +I ++        +   + G DD V KP +       +  V    R
Sbjct: 67  EVCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  + + +  +GP  +   G     +GE   L  RE  ++   M N GK  ++ +I +A+
Sbjct: 127 KAGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G  D   +   V+ HI +LR+K+ +  G  + +++   +GY 
Sbjct: 187 WGA-DYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYR 228


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 97/234 (41%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     +        A  D+  ++  L   G   +
Sbjct: 5   ILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLML--PGMDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR++
Sbjct: 63  DVCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIE 122

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                            +   + ++    +  V+ E+  L  +E  +L YL  ++G+ + 
Sbjct: 123 QTGGAVAKNEQGKGKSIQIADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + Q+ +A++  ++   +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 RDQLLNAVW-NYEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLEE 235


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       + G       + +  +      + D+  ++  L       ++
Sbjct: 9   LVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIML--PHIDGVD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + + IR  S +P+I ++        +   + G DD + KP   +E    +  V   Y   
Sbjct: 67  VLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNVD 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +  +      + +   +P +E  +L YL  N+ +   + Q+   ++G
Sbjct: 127 NENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL     ++ +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKLEGGPNWE-IETVWGVGYKFEV 227


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNRAETGPIRVFSDG----------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +             S             +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +    +G  ++     +   +  S+   ++  ++  L       +
Sbjct: 7   ILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIML--PDTDGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  + +P+I ++   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 65  EVCRTIREITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFFV 124

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S    + G +++  DG     + +   L   E +IL  L    GK   K QI
Sbjct: 125 LGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQLTSTEFKILLLLAREPGKVFTKKQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           F+ ++G      + N V  HI +LR K+ +     + +++   +GY    D N
Sbjct: 185 FNKVWGDDYLEADNN-VMVHIRRLRTKIEDDPKNPEFIETVWGIGYRFAGDEN 236


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D        +G  +   ++      +      D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCRELRARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGDA 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           G  D   +   ++ HI +LR K+         + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGYKFE 225


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +    +  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMML--PGIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +   + G DD V KP   +E    +  V   Y  
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL N      +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227


>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 93/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         E    L  S   D+  ++  L        
Sbjct: 5   ILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIML--PKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R +R     P++ ++        +   + G DD + KP   RE++ARV A  RR   
Sbjct: 63  TVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLIP 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +++  + G + +  D  + +   E   L  RE  ++++L A +G   ++  +
Sbjct: 123 GEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              ++G ++   +   V+  + ++R+KL  +      + +KR +GY  + 
Sbjct: 183 LEKVWG-YEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGYYFNK 231


>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +++ +     F   G  +   +       +      D+  ++  L   G    
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVML--PGLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
            + R +   + VP++ ++        +   + G  D V KP        R          
Sbjct: 62  SVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R   S+N    GP+++  + R    +     L  +E  +L  LM N G  +++  +   
Sbjct: 122 QRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G  D       ++ H+  LR+KL  +      + + R +GY  
Sbjct: 182 VWG-SDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        +G ++   +  E         + D   ++  L        E
Sbjct: 8   LVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIML--PKIDGWE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR    VP+I I+        +   + G DD V KP   +E    +  V       
Sbjct: 66  VCREIRKDRNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTNPY 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N       +++         + +   LP +E  +L +L++++     + Q+   ++G
Sbjct: 126 FGTNEEIALFGLKINIREYTLLREEKEIVLPPKELELLFFLISHKNNVFTRQQLLDEVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   ++ HI ++R+K+    G   + + R +GY  + N
Sbjct: 186 -YDYEGDPRTIDVHIKRIREKIGEGSGEWSLKTIRGVGYKFEVN 228


>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLML--PKLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L+    G DD + KP   R+++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAYR 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I                  G+   L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +E     +         + ++  ++  L       +
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLML--PKLDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + IR      P+I ++        +   + G DD + KP   R              
Sbjct: 63  EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +      + +      E G +RVF +  +  +Q E      +E  +L YL+ N+ + + +
Sbjct: 123 QNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY  + 
Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E            + 
Sbjct: 65  QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +          G+V  +P +E  +L +L ++  +   + Q
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPTWSL-GTVWGIGYKFEV 232


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E       + R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R      P++ ++        +   + G DD + KP   RE            +
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N      +++  +  +   Q E   L  +E  +L YL  N+G+ + + 
Sbjct: 123 LQDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 233


>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 231

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      L    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    + +    D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIML--PKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E   +          + R   + G+   L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++G ++   +   V+ H+ +LR+K+  N      V +K  +GY    N
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGYYYSQN 230


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +       +    R  +  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVML--PGMDGY 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           ++ + IR     +  P++ I+        +   + G DD + KP   RE+    +     
Sbjct: 64  DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +K  +     G I +  D  +    GE   L  +E  +L+ L+ N+G+ + +  +   
Sbjct: 124 TAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+G ++   E   V+ HI  +R+K+ +       +++ R +GY  +W
Sbjct: 184 IWG-YEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRFNW 229


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++  +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115
           E+ + IR  + +   P+I I+        +   + G DD + KP         +  V   
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +     G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +++ +     F   G  +           +    R D+  ++  L   G    
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
            + R +   + +P++ ++        +   + G  D V KP        R          
Sbjct: 62  SVCRAVAKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R   ++N    GP+++  + R    Q     L ++E  +L  LM N G  +++  +   
Sbjct: 122 QRQAPTSNVLSIGPVQLDRNSRRVWYQDREVELSQKEFDLLACLMHNAGVALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G  D       ++ H+  LR+KL  +      + + R +GY  
Sbjct: 182 VWGN-DFLGSNRTIDVHVRWLREKLEPDPANPVLIRTVRGIGYCF 225


>gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 235

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +     A    +G   +          +  S + D+  ++  L   G   +
Sbjct: 14  ILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVML--PGMDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R  S V +I ++        +     G DD + KP   RE++AR+ A  RRL  
Sbjct: 72  ELLAHLRRESNVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRRLNP 131

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +R+    R   V   +  L   E  +L  L  + G+ +++ Q+  
Sbjct: 132 PPAATSETAMLNFAHVRIDPSARRVWVNNTLIDLTTVEFDLLLTLAQHHGRVLSREQLLE 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G +D   +  VV+ HI  +R+KL N      +++ R +GY  + N
Sbjct: 192 KVWG-YDYYGDTRVVDVHIGHIRQKLGNNT---WIETVRGVGYRFEDN 235


>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 239

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   +    S E    +    + D+  ++      G   
Sbjct: 6   ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVM--MDGMSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E    IR +S  P+  ++   S    L  F SG DD + KP +  E++AR+ A  +R  
Sbjct: 64  FEACAAIREYSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKRTY 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   + P         P+        +V     +  ++L+Y   +    ++K QI+ 
Sbjct: 124 KQEDGRSSTPYAYEHFTFYPQFAELIVGGKVVSCSAQLLQLLQYFCDHPNVVLSKDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G +    + N V  H+ KLR+K+  +    + + + R LGY    N
Sbjct: 184 KVWG-YPSYGDNNTVMVHVRKLREKIERDASDPEYIVTVRGLGYRFIPN 231


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMML--PGIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +   + G DD V KP   +E    +  V   Y  
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL N      +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227


>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS278]
 gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA S+    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G I +  + R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  ++G  ++     E           D+  I   ++       
Sbjct: 5   ILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAK----DMDLIILDVMMPKMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           +  R IR  S  P++ ++     Q     F SG DD + KP  + E+             
Sbjct: 61  KACRQIREVSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +   ++++      + +  +    +  G+   L   E +IL  L  +  K  +  ++
Sbjct: 121 YKGKEEPLTDSHIVMHDLDISRESNQIKKNGQTVNLTEMEYQILLLLAEHPKKIFSNQEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + AI+         N +  HI  LRKKL  +      + +    GY  D
Sbjct: 181 YEAIWKGPYMYSANNTIMVHIRNLRKKLDVDPQNPLYIKTVWGKGYRFD 229


>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 247

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++       G  G ++   +      +   S R D+  ++  L         
Sbjct: 14  LVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVML--PDTDGFR 71

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
           L R +RA     P++ ++    ++  +    SG DD V KP H +E+L RV AI      
Sbjct: 72  LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 131

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +     +    G    L   E R+L   +A+  + + K +I  
Sbjct: 132 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D + +  +V++++  LR+KL +      + + R +GY +
Sbjct: 192 RVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E         + D+  ++  L   G    E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVML--PGLTGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAI 115
           + + IR  S VP+I ++        +   + G DD + KP +  E+         R A  
Sbjct: 63  VCQAIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAHH 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + + S    E   +++  + R   + G+   L  +E  +LE L+ +  K  ++  + +
Sbjct: 123 DVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G +D   +   V+ HI +LR+K+    G  D V +K  +GY  
Sbjct: 183 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYF 227


>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 232

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G  +      E    +  + + D+  ++          L
Sbjct: 5   ILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I+  + VP++ +S    L   +  F  GVDD   KP    E+  RV A+ RR K 
Sbjct: 63  EACQKIKGAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKG 122

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +R +   I  +         R   +  +   L  +E  +L  + ++  +  ++ Q+  
Sbjct: 123 VTDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKEFDLLWLMASHPNQVFSRLQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+       +E+ V  HI +LR+K+  N    + + +   +GY  +
Sbjct: 183 QIW-ESRYEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGYKFE 228


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  ++          +      D+  ++  L        
Sbjct: 4   ILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIML--PKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        +  F+   D+ + KP + R +         R   
Sbjct: 62  SVCREIRRESMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLL-VARIKAIFRRAG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++   G I +    R  E++GE   L  +E  +L Y + NRG  +++ +I ++++G +
Sbjct: 121 KPDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWG-W 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   V++H+ +LRKK+        + + R  GY  + 
Sbjct: 180 DYFGDVRTVDTHVKRLRKKIGEI----YIQTIRGFGYRFEE 216


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +        +G  +    +         +   ++  ++  L   G    +
Sbjct: 8   LVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIML--PGADGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 66  VCREIRQVSNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRRYEHK 125

Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +                +V G    +P +E  +L +L +N  K   + Q+   ++G
Sbjct: 126 EIDVKEVVYPNLVINKSNYTLKVNGTDMEVPPKELELLYFLASNPNKVFTRDQLLEQVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD   +   V+ HI +LR+K+ ++     V +   +GY  + 
Sbjct: 186 -FDFYGDSRTVDVHIKRLREKIESEDQNWQVKTVWGVGYKFEV 227


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++   +S      L    + D+  ++           
Sbjct: 6   ILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIM--MPEVSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ R IR   Q+P+I ++        L   + G DD + KP   RE    +  V    + 
Sbjct: 64  DVLRRIREKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +N   E G IR+  + +   + G    L   E RIL  LMA+ G  V++ +I   ++
Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G +     E  +++HIS LRKKL +  L    + +    GY +
Sbjct: 184 GGY-YEGYERNLDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225


>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKIFGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++       R A  
Sbjct: 65  EVCSKIREFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V          G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 239

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G S+E   +         + +  +  ++  L        
Sbjct: 4   ILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNL--PDVSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + ++  + V ++ ++   S    L  F  G DD + KP    E+ ARV AI RR ++
Sbjct: 62  DLCQQMQKETGVYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRRQRM 121

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +  + R    +  +  L   E  +L  +  + G+   + ++   
Sbjct: 122 KTEVASAPVLTFASLVIDPETRAVIREQRLINLTALEFDLLYAMARHPGRVWRRAELIQE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++  F+   +E VV+ HI ++RKKL  +    + + + R +GY  +
Sbjct: 182 VWD-FNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFE 226


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       + G       + +  +      + D+  ++  L       ++
Sbjct: 9   LVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIML--PHIDGVD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + + IR  S +P+I ++        +   + G DD + KP   +E    +  V   Y   
Sbjct: 67  VLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNVD 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +  +      + +   +P +E  +L YL  N+ +   + Q+   ++G
Sbjct: 127 NENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL     ++ +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKLEGGSNWE-IETVWGVGYKFEV 227


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G ++                + D+  ++  L         
Sbjct: 5   LIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIML--PRLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI+R  S VP+I ++        +   + G DD ++KP    E LARV AI RR +  
Sbjct: 63  VCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +           IRV +  R     G+   LP++E  +L  LM NRG  + +  +   +
Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   V+ HI  LR+K+  +      + + R +GY  +
Sbjct: 183 WGQ-DFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGYRFE 226


>gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
 gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
          Length = 225

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD V+KP   +E++ARV A  RR   
Sbjct: 63  DVCKAIRETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 122

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    +   +   G      G+   L   E  +L  L +   +  ++ ++   ++G
Sbjct: 123 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + ++ +  +V  HI +LR K+  +      + + R +GY 
Sbjct: 183 -YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 222


>gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199]
 gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + ++++D A +          +G  +      E    + +  + D+  ++  L    G +
Sbjct: 18  LILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPLLSGIE 77

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V    R +     VP+I ++        +   +SG DD V KP    E++ARV A+ RR 
Sbjct: 78  VCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELIARVRAVLRRA 137

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G + +       +       L   E R+L + + + G+  ++ Q+   +
Sbjct: 138 RPSTEDEMLHYGDLHMDLAAHRVKRSERDIHLGPTEFRLLRHFLEHPGRVFSREQLLDTV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK L  +   D + + R  GY++D
Sbjct: 198 WG-PDVYVEPRTVDVHIRRLRKALNAEQDDDVIRTVRSAGYALD 240


>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 236

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S+   N              D+  ++  L       +
Sbjct: 6   ILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPL--MDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+VP+I ++   S   T+   + G +D V KP   RE+LARV A  R +  
Sbjct: 64  EVCREVRKTSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVNT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                              + ++      Q +   L +RE  +L YL  N G+ + +  +
Sbjct: 124 VEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSTPIYIMTRRGVGYYL 230


>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 218

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  ++          +      D+  ++  L       +E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVML--PEMDGME 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKK 122

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E     +         D R    + +   L  +E  ILE L  N  K  ++ ++ S
Sbjct: 123 AKAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLLS 182

Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G    EA +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 183 IVWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYF 229


>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
          Length = 227

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G  +                  D+  ++  L   G    
Sbjct: 5   ILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P++ ++        +   ++G DD V KP   +E++ARV A  R  + 
Sbjct: 63  DVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S            +   G   + +G V  L   E  +L  L  +  K  ++ ++   ++G
Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222


>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 228

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G ++         E      + D+  ++  L   G    
Sbjct: 4   ILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIML--PGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P++ +S        +     G DD + KP    E++ARV A  +R + 
Sbjct: 62  QVCRRIREKRNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQRYRQ 121

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +           + +   G    ++G+   +P +E  +L +L  N G   +K  +F 
Sbjct: 122 LTGQHSGDQLLRRKDLTIDRKGHHVYLKGKEIAMPNKEFSLLLFLAENPGVVFSKETLFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+G  D   +   V  H++++R+K+       + +++   +GY  
Sbjct: 182 RIWGE-DSLGDTATVSVHVNRIREKIEPSTAKPEYIETVWGVGYRF 226


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G         +    L +    D+  ++  L       L
Sbjct: 5   ILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLML--PEMDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R      P++ ++        +   + G DD + KP   RE           + 
Sbjct: 63  EVCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSA 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V    ++ +   ++   G + ++ +  +  +  E   L  +E  +L YL  + G+ + + 
Sbjct: 123 VPKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 QLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLE 232


>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 225

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G ++   N  E    + S     +  I+       +   
Sbjct: 4   ILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVM--MPNKNGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ ++     +  +  F  G DD ++KP    E++ RV A+ RR K+
Sbjct: 62  ELCREIRDLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKI 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   T     + +   +  +  E    P +E ++L  L ++ G+  ++ Q+   I+G 
Sbjct: 122 NTHEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+SHI K+RKKL  +  FD + + R LGY ++ 
Sbjct: 181 SDFDGFDRTVDSHIKKIRKKLSQQTAFD-IVTIRGLGYRLEV 221


>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +      E       +   D+  ++  L        
Sbjct: 5   ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
           ++ R IRA S VP++ ++        +   + G DD + KP   RE              
Sbjct: 63  QVCRKIRASSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTES 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                      TG I +     +      V  L  RE  +L++L     +   + Q+   
Sbjct: 123 GSGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +     + + +KR +GY  
Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYF 226


>gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 234

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +   ++G  +           L  S + D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVML--PGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR +V
Sbjct: 64  EVCRQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRV 123

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             +  + R+ E  G    L  RE  +L  L +  G+   + ++ 
Sbjct: 124 IRAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D A  + VV+ HI  LR+KL +   G   V + R +GY  
Sbjct: 184 QRVWG-PDFAGIDRVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKF 229


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+          G  +   +       +      D+  ++  L        
Sbjct: 16  ILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVML--PKLDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I +S    +   +   D G DD + KP   +E+ AR+A I RRL  
Sbjct: 74  GVCRELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDD 133

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S N               + + ++ R    +GE  PL   E  +LE L    G+ V + +
Sbjct: 134 SPNALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAE 193

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           I   ++G       +  VV+ ++++LR KL       + + + R  GY
Sbjct: 194 ILEELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGY 241


>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 225

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G ++   +  E    L +  +  ++ ++       +   
Sbjct: 4   ILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVM--MPNKDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +  VP+I ++    L      F  G DD + KP   RE+L R+ A+ RR ++
Sbjct: 62  QLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +          +     + +  G+V  LP +E  +L  L +   +  ++ ++   I+G 
Sbjct: 122 VSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 -DFDGDDRTVDVHIKRLRERFADRRGDFRIRTIRGVGYKLE 221


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +       +    R  +  ++  L   G    
Sbjct: 15  ILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVML--PGMDGY 72

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           ++ + IR     +  P++ I+        +   + G DD + KP   RE+    +     
Sbjct: 73  DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +K  +     G I +  D  +    GE   L  +E  +L+ L+ N+G+ + +  +   
Sbjct: 133 TAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDK 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+G ++   E   V+ HI  +R+K+ +       +++ R +GY  +W
Sbjct: 193 IWG-YEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRFNW 238


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L    +   
Sbjct: 3   ILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIML--PKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+       + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+ N      + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIENNKYPWKIKTVWGVGYKFE 222


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S + D+  ++  L   G+  +
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLML--PGKDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ R +RA  + P+I ++        +   + G DD V KP                  +
Sbjct: 63  DVCREVRAKLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            AA     + +        + + +D       GE   L  RE  ++ YL+ N GK + + 
Sbjct: 123 AAAAAEGAEETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A++G F+   +   V+  I +LR+K+  +    + + ++R LGY +
Sbjct: 183 HLLQAVWG-FEYFGDVRTVDVTIRRLREKIEKDPSKPEYILTRRGLGYMM 231


>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 227

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G  +                  D+  ++  L   G    
Sbjct: 5   ILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   ++G DD V KP   +E++ARV A  R    
Sbjct: 63  DVCRAIRHVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +            +   G   +  G V  L   E  +L  L     K  ++ ++   ++G
Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGYR 222


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  ++     E    L      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVML--PKYDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR +S VP+I ++        +   D G DD + KP +        + + R  +  
Sbjct: 64  VCQQIREYSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSKR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + +      G +++  + R   +  +   L  +E  +LE L  N GK  ++  + + 
Sbjct: 124 DKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYF 227


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLML--PGMDGY 63

Query: 62  ELPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           ++ + IR  + +     I I+        +   + G DD + KP   RE++ARV      
Sbjct: 64  DVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +     G I +  +      +G+   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYVLGNIVIDFEKHSLTKEGKKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 TIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKYIETIRGIGYRFN 229


>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++      +       S    +  ++           
Sbjct: 4   IMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R H   PL+ ++        +  F+ G DD + KP   +E++ RV A+ +R ++
Sbjct: 62  ELCRKLREHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRI 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +         +           + + +P +E  +L  L +  G+ +++ Q+   I+G 
Sbjct: 122 AASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  V+ HI++LR++    +    + + R LGY ++
Sbjct: 181 YDFEGNERTVDVHINRLRERFPEAMYGFLIRTVRGLGYRLE 221


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  N      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L G +G  +              S   D+  ++  L   G    
Sbjct: 4   ILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLML--PGASGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S+VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRQLRAKSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRRNTE 121

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S++  +        R+  +     V+G    LP +E  +LE L+ N G+ + + Q+   I
Sbjct: 122 SSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLIDRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WGQ-DYVGDTKTLDVHVKRLRAKIEETPSEPKLLVTVRGLGYKFE 225


>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 290

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +       + G  ++          +  +   D+  ++  L   G   +E
Sbjct: 56  LVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLML--PGIDGIE 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   ++G DD V KP   RE+  RV ++ RR    
Sbjct: 114 VCRRLREQRPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRAAEP 173

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + V +  R     G    L  RE  +L +L+ + G+   ++++   ++G
Sbjct: 174 PRASGALHAGMLVVDAAARTVTRHGVALSLTVREFDLLAFLLRHPGRAFTRSELLEQVWG 233

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                 + + V  HI +LR+K+ +       + +   +GY  D
Sbjct: 234 W--SYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 274


>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 240

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  ++   + E               ++       +  LE
Sbjct: 10  LVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIM--MPEKDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           +   IR  +  P+I ++        +  F+ G DD + KP   RE           ++  
Sbjct: 68  VCAEIRERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 127

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +       S +      + +  D      +G    L  +E  +L +L  +  K   + Q+
Sbjct: 128 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 188 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 237


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R      P++ ++        +   + G DD + KP   RE            +
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N      +R+  +  +   QGE   L  +E  +L YL  N+G+ + + 
Sbjct: 123 LQDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLEE 233


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D     F  +G  +      +    +    R D+  ++  L   G   +
Sbjct: 4   LLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVML--PGRDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           ++ R +R    VP+I ++   S    +   + G DD V KP   RE+        R    
Sbjct: 62  DVCRTVRQTYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K S +      + +  +    E  GE   L  RE  +L YL  ++G+ + +  +  
Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +++G FD   +   V+  I +LR+K+ +       + ++R LGY++
Sbjct: 182 SVWG-FDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTL 226


>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
          Length = 249

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +      +       +   D+  ++           
Sbjct: 12  ILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 70  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIGK 129

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   IR+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 130 EGAAGIPNSGVIQINEIRIDTNKRQVFRGDERIRLTGMEFSLLELLVGRSGEPFSRGEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 190 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 237


>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
 gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         +G  +E                 D+  ++      G   +
Sbjct: 7   LLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLM--MPGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EVCKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +      N      + + +D       G+   L  +E  +L YL     K   + Q
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  +D   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 LLREVW-HYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFEV 235


>gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 241

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+           G  +E  N       L S++  D+  ++  L   G    
Sbjct: 17  ILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRML--PGLDGA 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   +    +   + G DD V KP+  RE++ RV ++ RR   
Sbjct: 75  EVCRRIRQTMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRRSVK 134

Query: 122 SNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R   + G    L  RE  +L + +    +  ++  +  A++
Sbjct: 135 EFTPEPVVELAGFVLNPASRVVSLNGVDLALTAREFDLLAFFLRRPNQVFSREDLIRAVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           G      + + V  H+ +LR+K+  N      + + R LGY  D 
Sbjct: 195 GWD--FGDLSTVTVHVRRLREKIEQNPTQPLLLHTVRGLGYRFDV 237


>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
 gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
          Length = 229

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        +G ++    + E    L      D+  ++  +    G +V 
Sbjct: 9   LVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV +  RR++ 
Sbjct: 69  RRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRRVRP 128

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    + E   I + +             L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 AATGGQLEYEDIVLNAASHRVSRGENELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQFGGSDPLRTVRGAGYAL 228


>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 230

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G  +      E       +   DV  ++  L   G   +
Sbjct: 5   ILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWML--PGMSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R +R    +  VP+I ++     +  +   D+G DD + KP   RE+    +     
Sbjct: 63  DLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +++    E   +R+       + +G    L   E R+L + M +  +   + Q+   
Sbjct: 123 RAPQMTEEAVEVAGLRLDPVSHRVQGKGIALELGPTEFRLLHFFMTHPERVYTRPQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  VEE  V+ HI +LR  L        V + R  GY  
Sbjct: 183 VWG-DDVFVEERTVDVHIRRLRLALEPSGHAALVQTVRGSGYRF 225


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGYYL 228


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++         +G+ +    S E      +    D+  ++  L   G   LE
Sbjct: 12  LIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVL--PGRSGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120
           + R IR  S  P+I ++        +   ++G DD V KP    E+ AR+   A      
Sbjct: 70  VCREIRRVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +          GEV PL R E  +L  L   RG+  ++ ++   ++G 
Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +D   +  +V+ H+ +LRKK+  +      V + R +GY +
Sbjct: 189 YDYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRL 229


>gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 229

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 85/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSLEEPIDVQGLMLDPTSHRVMVDEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEPSGHDRLIQTVRGAGYRF 225


>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
 gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
          Length = 239

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G S+   ++ E      + AR D+  ++  L   G    
Sbjct: 4   ILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIML--PGLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112
           ++ R +R  S VP++ ++   +    +   + G DD + KP   RE+            +
Sbjct: 62  QVCRQLREQSTVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVKALLRRREL 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A       S +  E GP+R+  + R    +G    L  RE  +L YL  +R +     +
Sbjct: 122 LARELAAGFSPDILEIGPLRIDLEQRRVWREGREVALKPREFDLLAYLARHRERVCRSEE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  A++G +D   +   +  H+  LR+KL +       +++ R +GY +
Sbjct: 182 LLRAVWG-YDTFGDFRTLAVHVHGLREKLEDDPRRPRLIETVRGIGYRL 229


>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 233

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLML--PKLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I                 +G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  ++   + E               ++       +  LE
Sbjct: 8   LVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIM--MPEKDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           +   IR  +  P+I ++        +  F+ G DD + KP   RE           ++  
Sbjct: 66  VCAEIRERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +       S +      + +  D      +G    L  +E  +L +L  +  K   + Q+
Sbjct: 126 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 235


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G+ ++     E           D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIML--PKLTGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR++  
Sbjct: 64  VCQQIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRKE 123

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +   G        ++  +GR   + G+   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 EAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYF 227


>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
 gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 237

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +        +G  +   +  +           DV  ++  L   G+  L 
Sbjct: 8   LVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIML--PGQDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           L R +RA   +P+I ++        +   + G DD V KP   R     I A +      
Sbjct: 66  LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +N + +   + + +D R   V      +  RE  +L +L  N  +   + ++  A++
Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   ++  V+ HI +LR KL +    + + +   +GY  
Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKLASLP-HEYLQTVWGVGYKF 225


>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
 gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
          Length = 238

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         +G  +E                 D+  ++      G   +
Sbjct: 7   LLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLM--MPGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E  + IR     P+I ++        +  F+ G DD + KP   RE           +  
Sbjct: 65  EACKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +      N      + + +D       G+   L  +E  +L YL     K   + Q
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  +D   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 LLREVW-HYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFEV 235


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
 gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G              L      D+  ++  L   G    E
Sbjct: 6   LIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLML--PGMDGFE 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR   S VP++ ++        +   + G DD + KP   RE+LARV A  RR  +
Sbjct: 64  VCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRRSAM 123

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  + E                V  +       G    L +RE  ++ YL +  GK  ++
Sbjct: 124 APAQGEQAQPASGKRLELGRVVVDQEKATVYKDGNPLELTQREYDLICYLASQPGKVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +   ++       +   V+  + +LR+K+ +       + +KR +GY  
Sbjct: 184 EALMEHVWNYEGYVGDVRAVDVAVRRLREKIEDDPASPKFIVTKRGMGYLF 234


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  TLCRRIREQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQI 173
           +  +         + G      G+            P +E  +LEYLM N+G+ + + Q+
Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
              I+G  D   +   ++ H+ ++R K+         + + R LGY ID 
Sbjct: 182 IDRIWGA-DYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKIDE 230


>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
 gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++       G  G ++      +   +   S R D+  ++  L         
Sbjct: 17  LVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVML--PDTDGFR 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
           L R +RA     P++ ++    ++  +    SG DD V KP H +E+L RV AI      
Sbjct: 75  LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 134

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +     +    G    L   E R+L   +A+  + + K +I  
Sbjct: 135 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D + +  +V++++  LR+KL +      + + R +GY +
Sbjct: 195 RVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 238


>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 229

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G  +                  D+  ++ +L       L
Sbjct: 6   ILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWL--PDLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I +S        +  F  G DD V KP    E++ RV A+ RR++ 
Sbjct: 64  EVCRQLRAKYAIPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S++      IR     +    R  E+ G    L  RE  +L  L ++  +  ++ Q+ + 
Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++   +   +   V   I +LR+KL       + + +   +GY  
Sbjct: 184 VW-KNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGYKF 227


>gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 247

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 4/224 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +          +G  +E  ++ +  E   +    D+  ++  L G  G ++
Sbjct: 20  ILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLPGVSGLEI 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R   A   +P+I ++        +     G DD V KP    E++ARV A+ RR +
Sbjct: 80  CRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELMARVRALLRRAR 139

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++     I +  D       G    L   E R+LEY M   G+   + Q+  +++
Sbjct: 140 PERVASKLRLGDIDLDRDTHRVRRSGREIHLGPTEYRLLEYFMEKPGRVFTRAQLLDSVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+  E ++E  V+ H+ +LRK L      DP+ + R  GYS D 
Sbjct: 200 GMSAE-IDERTVDVHVGRLRKALIRGREKDPIRTVRGAGYSFDE 242


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +    +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 224

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 4   ILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPM--MDGW 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGSTQTIQFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 222


>gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G  ++            ++   D+  ++  L   G   LE
Sbjct: 24  LVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLML--PGMDGLE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRLK 120
           + R +R    VP+I ++        +   + G DD V KP   RE  +         R  
Sbjct: 82  VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTRPV 141

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + +    R     GE   L  RE  +L + + + G+  ++  +   ++G 
Sbjct: 142 TAPRPLHASGLALDPAARRATKDGEELALTIREFDLLAFFLRHPGRAFSREDLMREVWGW 201

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                + + V  H+ +LR K+ +       + +   +GY  
Sbjct: 202 D--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRF 240


>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 234

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +              S   D+  ++  +   G   +
Sbjct: 6   ILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMI--PGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ + +R +   P+I +S   +         +G DD ++KP    E            R+
Sbjct: 64  EVCQALRKNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRI 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N R   G + +  D     V G+   L  +E ++L  L  N  +  +  Q
Sbjct: 124 LENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F  ++   +   +   V  HIS +RKK+  +      + + + +GY  
Sbjct: 184 LFETLW-ATESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGYKF 231


>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +        +G  +   +  +           DV  ++  L   G+  L 
Sbjct: 8   LVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIML--PGQDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           L R +RA   +P+I ++        +   + G DD V KP   R     I A +      
Sbjct: 66  LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +N + +   + + +D R   V      +  RE  +L +L  N  +   + ++  A++
Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   ++  V+ HI +LR KL +    + + +   +GY  
Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKLASLP-HEYLQTVWGVGYKF 225


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G  ++     E       + + DV  ++  L       L
Sbjct: 5   ILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVML--PKYDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           ++ +++R  S +P+I ++        +   + G DD V KP +      R       + +
Sbjct: 63  QVCQLVREFSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQH 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E G +R+  + R   ++ +   L  +E  +LE    + GK  ++ Q+   
Sbjct: 123 AEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLDT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G  +   +   V+ H+ +LR+K+  N    + + +K  +GY  
Sbjct: 183 IWGR-EYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYF 226


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                   +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    L    + D+  ++  L        
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVML--PKLDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 84  AVCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 143

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE                   ++ R     GE   L   E  +LE L    G+ V 
Sbjct: 144 GSAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVP 203

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL       + + + R  GY
Sbjct: 204 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G S+           L      D+  ++  + G      
Sbjct: 5   ILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGP--DGF 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E+ R++ A    + +P++ ++        +     G DD V KP   RE++ R+ A    
Sbjct: 63  EICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E   IR+  D    E  GE   L   E R+LE L+ + G    + Q+ + 
Sbjct: 123 GTRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR KL        +++ R +GY I
Sbjct: 183 VWG-YSFEGYARTVDTHVRRLRAKLG--HAASMLETVRGVGYRI 223


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +   N       L +  R D+  ++  L        
Sbjct: 4   ILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIML--PKIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            +  +IR  S VP+I ++     +  +   D  VDD + KP     +L ++        R
Sbjct: 62  GVCELIRKQSDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSNR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D     V G  F L ++E  IL  L+ ++G+ + +  +   +
Sbjct: 122 ETDEKYQIITYGNLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +E VV++HI  LRKKL    G D + + R +GY +D 
Sbjct: 182 W-RYDFYGDERVVDTHIKNLRKKL----GIDFIQTIRGVGYKVDK 221


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +E     +         + ++  ++  L       +
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLML--PKLDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + IR      P+I ++        +   + G DD + KP   R              
Sbjct: 63  EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +      + +      E G +RVF +  +  +Q E      +E  +L YL+ N+ + + +
Sbjct: 123 QNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY  + 
Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++              + R D+  ++  L   G    
Sbjct: 3   ILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + RI+R  S VPLI ++    ++  +   ++G DD + KP         I A +    R
Sbjct: 61  AVCRILRRESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTPR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +R   GP+ +    R+    G    L  +E  +L  L  + G+ + + +I   +
Sbjct: 121 VEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G +D   +   V++H+  LR KL         +++ R +GY ++
Sbjct: 181 WG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224


>gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
 gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
          Length = 223

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     AL  ++G S++   +    E      R D+  ++  L        
Sbjct: 4   ILIVEDERQIVKHLRALLEEEGFSVDTAATRAEAESALEGDRFDLILLDLML--PDGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I      P+I ++      + +  F+ G DD + KP    E++ARV    RR   
Sbjct: 62  ALCTEILHRGNTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRRSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + V + G      G+   L   E R+L  L+++RG+ ++++++   I+   
Sbjct: 122 AQSVFQLGNLSVDTAGASVRRDGQEIVLSALEYRLLLTLLSHRGEVLSRSRLLQEIWDAS 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + V +N +  +I +LR+K+  +      + + R LGY ++
Sbjct: 182 GDFVNDNTLTVYIKRLREKIEKDPAEPRIIKTVRGLGYKVE 222


>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 224

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 96/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    +   +G ++              +++ D++ I+           
Sbjct: 4   ILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLM--MPNMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +RA   +P++ ++        +  F +G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCQELRASYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQI 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++        +     +       F LP +E  +L  L    G+  ++  +   I+G 
Sbjct: 122 IASQNVQIGKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +     E  ++ HI++LR++   +     + + R LGY ++ +
Sbjct: 181 YGFEGNERTLDVHINRLRQRFPEEKTDFRITTIRGLGYRLEVD 223


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    L    + D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVML--PKLTGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP+I ++        +   + G DD V KP +        + + R +  +
Sbjct: 63  VCQAIREFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVSH 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E+  +++  D R   + G+   L  +E  +LE L+ +  K  ++  + + 
Sbjct: 123 AAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLNT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+    G  D V +K  +GY  
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYF 226


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR  S VP+I +S        +   + G DD V KP   RE    +  V    +  
Sbjct: 63  VCRQIRQTSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQEP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    E GP+R+  +     V G+   LP +E  +LE  + N G+ + + Q+   ++G
Sbjct: 123 DLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             D   +   ++ H+ +LR K+  +      + + R LGY  D 
Sbjct: 183 -SDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGYKFDV 225


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    S E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE    +  V    + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q+   I+
Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 G-SDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKID 224


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E      S  + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112
           ++ R IR ++ VP+I +S        +   + G DD + KP   +E+            +
Sbjct: 65  QVCREIRKNNNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYHM 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +        + +  D       G+   +P +E  +L +L +   +   + Q
Sbjct: 125 PQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G ++   +   V+ HI ++R+K+++ + ++ +++   +GY  
Sbjct: 185 LLDNIWG-YEYIGDTRTVDVHIKRIREKIKDHVHWN-IETVWGIGYKF 230


>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 257

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+          G  +      E    L +S + D+  ++           
Sbjct: 15  LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVM--MPKLDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP++ +S   ++   +   D G DD ++KP   +E+ AR++ I  R+  
Sbjct: 73  AVCRRLRAESAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVG 132

Query: 122 SNNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
               ++                  V ++ R     GE   L   E  +LE L    G+ V
Sbjct: 133 RGTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVV 192

Query: 169 AKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + +I   ++G       +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 193 PRAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +R      P++ ++        +   + G DD + KP   R              
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                               +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  +L  F + +      +  + D++ ++  L        
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  SICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 122

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+        V          +  +  +  +   L   E  IL  L +NRG+ V+  ++
Sbjct: 123 YNSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           F+ ++G        N V  HI  LR+K+++       + +   +GY I+ 
Sbjct: 183 FNEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGYKIEK 232


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G S+              +   D+  ++  L   G+  + 
Sbjct: 17  LVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVML--PGKDGMS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   ++G DD V KP   +E+LAR  A  RR    
Sbjct: 75  VCREIRAESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTPP 134

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +       + QGE+ PL   E  +L  L     + +++  +   ++G +
Sbjct: 135 QQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG-Y 193

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 194 QHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGYR 232


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G   +  ++ E    L +    D+  ++  L   G    
Sbjct: 8   ILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIML--PGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL R +R+ + VP++ +S   +    +   + G DD + KP   RE++AR          
Sbjct: 66  ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +N+      I +  D      +     L  RE  +L  LM N GK V++  +   
Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +G ++   E   V++HI +LR K+         V++ R  GY  
Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIEGAGYDPGLVETVRGYGYRF 229


>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +       + G      ++             ++  ++  L    G  V
Sbjct: 6   ILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +  R   + S  P+I I+        +   + G DD + KP   RE+    +       
Sbjct: 66  CKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRRTT 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +     G I +  +  +    G    L  +E  +LE L+ NRG+ + +  +   ++
Sbjct: 126 AKSIDKNFGFGKININFEKHEILKDGVKLDLTLKEFEVLELLIKNRGRVMTRDFLLDKVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G ++   E   V+ HI  LR+K+  +      +++ R +GY  +
Sbjct: 186 G-YEYIGETRTVDVHIRHLRQKIEEDDKNPKYIETIRGIGYRFN 228


>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
          Length = 369

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   +    S E    +  + + D+  ++  +   G   
Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 195

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 196 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 255

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S   +             P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 256 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 315

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G +    + N V  HI KLR+K   +    + + + R LGY    N
Sbjct: 316 KVWG-YPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGYRFIPN 363


>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 237

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++        +G  +    +           + D+  ++  L   G    
Sbjct: 4   ILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R+   VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRELRSRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +     GP+ +  +     V+G+    P +E  +LEYL+ N G+ +
Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + Q+   ++G  D   +   ++ HI ++R K+  +      + + R LGY  
Sbjct: 182 TRGQLIDRVWG-SDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGYKF 233


>gi|119513415|ref|ZP_01632446.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119461935|gb|EAW42941.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 241

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 8   ILVVDDDPAVRNLIQRFLIKQTYQVEAAEDGKTALALFEQFNPDLVILDVNL--PDVIGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++        +  F  G DD + KP    E+  RV AI RR ++
Sbjct: 66  NLCQEMQSRNGVFVLMLTSRADEADKIRGFSKGADDYLTKPFGLGELEVRVGAILRRQRI 125

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +    R+  +  +V PL   E  +L +L ++ G+   + ++   +
Sbjct: 126 VTTAEQKRLVFEKLMIDPARREVALNNQVIPLTALEFDLLHFLASHPGRVWRRAELIQEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  +
Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDVSQPALIQTVRGVGYKFE 229


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      E  +      R D+  ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLML--PKLNGIE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR ++
Sbjct: 64  VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----------PLPRRERRILEYLMANRGKRVAKT 171
           +  + E       S                       L  +E  +L YL  N+G+ + + 
Sbjct: 124 TAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGRVLTRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           Q+ SA++  +D A +  +V+ H+S LR+K+         + + R LGY ++ 
Sbjct: 184 QLLSAVW-NYDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLEE 234


>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
 gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       S + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR+    P+I +S    +   +   + G DD V KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRSKHNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 I +        V G+   +P +E  +L +L ++  +   + Q
Sbjct: 125 AKPETPAASRGKVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYVGDTRTVDVHIKRLREKIKDHPSWGL-STVWGIGYKFEV 232


>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLML--PKLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I                  G+   L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 231

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L++         +G              + SS + D+  +   ++       
Sbjct: 6   ILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEK-DIDLVILDVMLPEYDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + R IR  S  P+I ++        L  FD G D+ + KP     ++ARV A+  R + 
Sbjct: 65  TVCREIRKKSSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLRRAVP 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +   E   + +  +  +  +      L  +E  +L YL  N GK V++ QI   ++G 
Sbjct: 125 VDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V++HI++LR KL +K     V + R  GY  + 
Sbjct: 184 YDYYGDLRTVDTHINRLRIKLDSKSN--YVQTVRGYGYRFEV 223


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+ +           + ++   D+  ++          L
Sbjct: 5   ILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIG--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S+VP++ +S        +   + G DD V KP   RE++ARV  I +RL+ 
Sbjct: 63  ETCRRIRKTSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKRLRP 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  G                  G    L   E  ILE   A   +   + QI ++ 
Sbjct: 123 KEAEPSNGLTHGELSLDLASHRATFHGSALSLTALEFSILECFTARPNQVFTREQILASA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y      V +  ++SHI  +R KL    G   +++   +G+ +
Sbjct: 183 YNNA-INVSDRTIDSHIRNIRAKLALAGGGGCIETVHGIGFRL 224


>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A    +G ++    + +    +      ++  ++           
Sbjct: 5   ILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIM--MPVMDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
              + IR  SQVP+I ++     +  +  F+ G D+ V KP   + ++A+V A       
Sbjct: 63  TTCKEIRKISQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKRAYP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N       + +     + ++  E   L  +E  +L Y   N+G  +++ QI  +++G
Sbjct: 123 DENNQDNFFDGLYINEKAHETKINDEDIYLSPKEFELLSYFAKNKGMVLSREQILDSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   +   V++HI +LR+KL  K     + + R  GY  +
Sbjct: 183 I-DYYGDLRTVDTHIKRLREKLGEKAY--LISTVRGTGYKFE 221


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 18  ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 76  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 135

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 136 GGSAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 196 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 241


>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 232

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +    + D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D   A    +G S+    +         S + D+  ++  L   G    
Sbjct: 3   ILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLML--PGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+   IRA S+VP++ ++        +  F  G DD + KP   RE+  R          
Sbjct: 61  EICSKIRAISKVPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRRTKD 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + + +   + +  GE+  L   E ++L  +  N  +   + ++   
Sbjct: 121 DMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTPNEYKLLTVMAQNPNRVFTRGELIEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI-DWN 223
           + G +D    +  +++HI  LR+K+ +       + +    GY   + N
Sbjct: 181 VMG-YDFEGFDRTIDAHIKNLRQKIEDDPKNPVYIKTVYGAGYKFGEEN 228


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +R      P++ ++        +   + G DD + KP   R              
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                               +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    +         S   D+  ++  L   G   +
Sbjct: 4   ILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLML--PGLSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R +R  S VP+I ++   S    +   + G DD V KP   R     I A +  +  
Sbjct: 62  DVCRALRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRRLSE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKVEPDPAAPKHIVTVRGLGYKFE 225


>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          DG S+   ++      + +  + D+  ++           
Sbjct: 7   ILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVM--MPEYDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R IR  S VP+I ++        L  F+ G D+ V KP   + ++ARV A + R  +
Sbjct: 65  AVCREIRKTSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAE 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N       + +   GR   V G    L  +E  +L YL+ N+G+ + + QI +A++  
Sbjct: 125 HKNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWD- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +   V++HI  LR KL  K     + + R LGY  + 
Sbjct: 184 YNYFGDARTVDTHIKNLRHKLGAKGL--FIKTIRGLGYKFEV 223


>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +       +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVATQLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 TTPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + N
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVN 234


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                     +  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
 gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D       + G  +   +       L SSA  D+  ++  L        
Sbjct: 4   ILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIML--PKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  +IR  SQVP+I ++     +  +   D  VDD + KP     ++ ++ A+ RR  +
Sbjct: 62  TVCELIRKQSQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLRRSSM 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +              D     V G  F L +RE  +L  L+ N+G+ + +  +   +
Sbjct: 122 IPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREFEVLRELLLNQGRVLTRQNLLDKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +E VV++HI  LRKKL    G D + + R +GY ID 
Sbjct: 182 W-KYDFYGDERVVDTHIKNLRKKL----GIDFIQTIRGVGYKIDK 221


>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 231

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +    +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  ++G  +              + + D+  ++           
Sbjct: 4   ILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +L R +R H  +PL+ ++        +  F  G DD + KP    E++ RV A + R   
Sbjct: 62  QLCRELREHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQI 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++     G + +        V  E F LP +E  +L  + +   K  ++ Q+   I+G 
Sbjct: 122 ITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A  E  ++ HI++LR++   +     + + R LGY ++ 
Sbjct: 181 YDFAGNERTLDVHINRLRQRFPEENHSFKIRTIRGLGYRLEV 222


>gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +F  +G + +    +      L    + D+  ++  ++      
Sbjct: 6   ILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILD--IMLPDLSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
           LE+ R IR     PL  IS   S    L  F  G DD + KP +        +   +   
Sbjct: 64  LEMCRAIRKGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +   + G  ++     +  V+G+  P   +  R+L +   +  +   K Q++
Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D+ V++N V  HI K+R+K+  +      + + R +GY +
Sbjct: 184 YQVWGE-DQLVDDNTVMVHIRKIREKIEKDPSKPQYLKTIRGIGYKL 229


>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
          Length = 236

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +      E  + L  +   D+  ++  L G  G  +
Sbjct: 5   ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R       +P+I ++   S Q  +D  ++G DD + KP   +E++AR+ A    R 
Sbjct: 65  ARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++    G +++         QG    +   E R+L + M +  +   ++Q+   ++
Sbjct: 125 PQLTDDVISIGNLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LRK L        +++ R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDKHIETIRGSGYRF 225


>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 222

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   + +        DG   E     +    L  +A+ D+  ++  L       
Sbjct: 1   MVLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQL--PELDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           LE+ R IRA    P+I ++        L   + G DD V KP   RE++ARV        
Sbjct: 59  LEVLRRIRADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRAN 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+ +      GP+ + ++     V      L   E R+LE L    G+   + ++  A 
Sbjct: 119 PLESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEAA 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             L D    E V++ H+  LRKKL        +++ R +GY +
Sbjct: 179 --LPDSDALERVIDVHLKNLRKKLEAAGATGLLETVRGVGYRL 219


>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 235

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A + +       + G  +E     E           D+  ++  L G  G +V
Sbjct: 6   ILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +  R   A ++VP+I ++        +   + G DD + KP   RE++ARV        
Sbjct: 66  CKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRRTE 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     + G + + +   +    G       +E  +L+ L+ N+GK +++  +   +
Sbjct: 126 NNDMEPKIIKVGGLTIDTSKYEVYKNGNKLDFTLKEFELLKLLVLNQGKVLSRDYLLDQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +G ++   E   V+ HI  +R+KL +       +++ R +GY  
Sbjct: 186 WG-YEYFGETRTVDVHIRHIRQKLGDDMDEAKYIETIRGVGYKF 228


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +  + ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +R      P++ ++        +   + G DD + KP   R              
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           +   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 232

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +  + + D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +R      P++ ++        +   + G DD + KP   R              
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      +       +   D++ ++           
Sbjct: 6   ILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIM--MPKLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP +  E++ARV A  RR   
Sbjct: 64  EVIRQIREQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQ 123

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +    +G          ++ D R   + GE   L  +E  IL  L +   K  +   IF
Sbjct: 124 MSQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFSTENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++G        N V  HI  LRKKL         + +   +GY+ +
Sbjct: 184 QHVWGEAYFE-TSNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTFN 230


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                        +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 234


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G   +  ++ E    L +    D+  ++  L   G    
Sbjct: 8   ILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIML--PGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL R +R+ + VP++ +S   +    +   + G DD + KP   RE++AR          
Sbjct: 66  ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +N+      I +  D            L  RE  +L  LM N GK V++  +   
Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +G ++   E   V++HI +LR K+ +       V++ R  GY  
Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIESAGYDPGLVETVRGYGYRF 229


>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
          Length = 231

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+      E       S R D+  ++          L
Sbjct: 3   ILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVM--MPKLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R +R+     P++ ++   S+   +   D+G DD + KP          R ++ R A
Sbjct: 61  EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + +    RD    G    L R E  +LE L+ N  K +++T I
Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 LEDVWG-YDFPTSGNALEVYIGYLRRKTEADGEPRLIQTVRGVGYVL 226


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +    + D+  ++  L        
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVML--PKMDGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 86  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGP 145

Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE   +             V ++ R     GE   L   E  +LE L    G+ V 
Sbjct: 146 GSATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVP 205

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL       + + + R +GY
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 227

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      +              D+  ++  L   G    
Sbjct: 6   ILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLML--PGMDGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           E+ + ++  S   ++P++ ++        +   + G DD V KP   REI+ RV      
Sbjct: 64  EVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +          + V  +    E+  +   L   E ++L  L+ N G+ + + Q+ +
Sbjct: 124 NKGEEDVRQSWRRERLSVDMEAHRAEIDDQELLLTATEFKLLSELIRNPGRVLTREQLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++       V++H+ +LR+KL +      V++ R +GY  
Sbjct: 184 TVWG-YEFEGYARTVDTHVRRLRQKLGDY--AKFVETVRGVGYRF 225


>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
 gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
          Length = 231

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +   +  +    +  +   D+  ++           
Sbjct: 6   ILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIM--MPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRRIREKHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLRRFMK 123

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                +  + R   + G+   L  +E  IL  L +N  K      IF
Sbjct: 124 LNQPKTKQNSNLEFGGLTISPEQRTVTLYGKNIELTPKEFEILFLLASNPNKVYRAEDIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++G        N V  HI  LRKKL         + +   +GY  +
Sbjct: 184 QKVWGDAYYEGG-NTVMVHIRTLRKKLEEDKRKNKLIQTVWGVGYKFN 230


>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 231

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVML--PHMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + IR  S+ P+I ++        +   + G DD + KP   +E++AR+      Y  
Sbjct: 66  DVLKWIRKDSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  +  +   + +  +      +     +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ENVDKDVLKFRGLTIDINSYIVIYKENEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGDQNWQ-IETVWGVGYKFEV 227


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++              + R D+  ++  L   G    
Sbjct: 3   ILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + RI+R  S VP+I ++    ++  +   ++G DD + KP         I A +    +
Sbjct: 61  AVCRILRRESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTPK 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +R   GP+ +    R+    G    L  +E  +L  L  + G+ + + +I   +
Sbjct: 121 VEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G +D   +   V++H+  LR KL         +++ R +GY ++
Sbjct: 181 WG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224


>gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 232

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A +++     F  +G  +              + + D+  ++           E
Sbjct: 8   LIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIM--MPVLDGFE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV-----NKPIHHREILARVAAIYR 117
           + + +R  S VP+I ++        +   + G DD +      + +  R       +   
Sbjct: 66  VCKQVRKISDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRRSSQF 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   + +          G       +E  +L  L +N G   ++ Q+   I
Sbjct: 126 LQSQNKQVLEYPDLMINLSEYRVVAFGREVIFTAKEMELLWCLASNPGIVFSRNQLLEKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G +    +   V++HI ++R KL         + +   +GY  + 
Sbjct: 186 WG-YTYYGDTRTVDTHIKRVRHKLDIPKDAKWDIVTVWGVGYKFEV 230


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    D  S++     E    L    + D+  ++  L       +
Sbjct: 5   ILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLML--PKVNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           EL + IR  S+VP++ IS   S          G DD ++KP    E           A V
Sbjct: 63  ELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A                + +       +V+G+  PL  +E  IL+ L+ +  +   K Q
Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I+  I+   D    ENV+  HI +LR+K+  +      + +   +GY +
Sbjct: 183 IYQLIW-EEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGYKM 230


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        +G  +    + E    + +    D+  ++  L       +E
Sbjct: 9   LLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWML--PNVSGIE 66

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I        VP+I +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 67  VCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRA 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + S+       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G D + + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALSQHGGQDLLRTVRGAGYAL 228


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +           L    + D+  ++      G   L
Sbjct: 6   IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDV--EMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ R IR  + +P++ +S    L   +   ++G DD + KP    E+ A      R    
Sbjct: 64  EVCRRIRLKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGW 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++      +   + +  D R+  ++G    L  +E ++L  L     +     Q++ 
Sbjct: 124 RNNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G +    +   V+ HISKLRKK+  +    + + + R  GY   W
Sbjct: 184 QVWGYY-SEGDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGYKFIW 230


>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
 gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
          Length = 241

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ E    +      D+  ++  L       +
Sbjct: 8   LLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLML--PKMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P++ ++      + ++ F+ G DD + KP   RE++ RV+AI +R + 
Sbjct: 66  EVAGKIREAKDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S  +        E     +          G    L  +E  +L YL  +  +   + Q+ 
Sbjct: 126 SKPKEKANPDLIEMPHFEIDDQSHRVLADGNPVNLTPKEYDLLLYLAQSPDQIFGREQLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
             ++  ++   +   V++HI +LR+KL          + +   LGY  +
Sbjct: 186 REVW-KYEFFGDLRTVDTHIKRLREKLTKHSEPAAKMIVTVWGLGYKFN 233


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +R      P++ ++        +   + G DD + KP   R              
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                  +            +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWML--PGLSGI 62

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +       Q+P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G I +  + R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 223

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +  + G  +E  +       +    + D+  ++  L        
Sbjct: 5   ILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            +  IIR  S VP+I ++        +  F+  +DD + KP     ++ R          
Sbjct: 63  VVCEIIRKKSDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRYSN 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K S        I+++       V      L  +E +ILE LM N G+   ++ +   
Sbjct: 123 NPSKNSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDM 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I+G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 IWG-YDYFGDTRVIDTHIKNLRQKL----NVDYIKTIRGVGYKIEK 223


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++     E    L +  + D+  ++          +
Sbjct: 12  ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLM--MPKIDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 70  EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R E   I +         +G+  PL  +E  +L +  +N  +   K+Q+
Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G  +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E         + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLML--PKMDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQ 122

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             + + E                   +  +   Q E   L  +E  +L YL  ++G+ + 
Sbjct: 123 TLSVQPEETEEPDAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  + +A++  +D A +  +V+ HIS LR K+       + + + R LGY ++ 
Sbjct: 183 RDLLLNAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKMEE 235


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    +      D+  ++  L        E
Sbjct: 6   LVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVML--PKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S +P+I ++        +   + G DD + KP +        + + R ++  
Sbjct: 64  VCQRIREFSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSKR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E   +++  D R   V+ +   L  +E  +LE L  +  K  ++  + + 
Sbjct: 124 ATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+  N      + +K  +GY  
Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYF 227


>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 238

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  +E   + E    +          ++       +  LE
Sbjct: 8   LIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIM--MPEKDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           +   +R     P+I ++        +  F+ G DD + KP   RE           + V 
Sbjct: 66  VCAELREKKTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSAVF 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +       S +      + +  D       G    L  +E  +L +L  +  K   + Q+
Sbjct: 126 SPVSNSSSSKDLVVFPHLTIDHDAHRVTADGTEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 235


>gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 227

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E             + R D+  ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ ++ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRSLLRRTT 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E             R+         L R E  +LE LM+N  + + +++I   +
Sbjct: 121 RDEEESEAVSFADLTLDPVTREVTRGERQISLTRTEFALLEMLMSNPKRVLTRSRILEEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 WG-YDFPTSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVL 222


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +R      P++ ++        +   + G DD + KP   R              
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                               +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++        +   ++   + +    L +    ++  ++          +
Sbjct: 6   ILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + A              +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWDN-NYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGYKF 230


>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
 gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
          Length = 226

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V       F  +G++ E                 D+  ++  L   G   +
Sbjct: 3   ILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWML--PGMDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R IR   S VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR++
Sbjct: 61  ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++      F+  ++     +       L  +E  +L + + +  +  ++ Q+   
Sbjct: 121 KPEPVSDLIQTIHFTVNKETRDISKDGQAVDSLTPKEFDLLVFFLQHPKQVFSREQLLEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +    +E  V+ HI +LRKK+    G     +   +GY  + 
Sbjct: 181 VWG-YQFYGDERTVDVHIKRLRKKI--DGGDKLFHTVWGVGYKFEE 223


>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E         + D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ R IR  +  P+I +S    +   +   + G DD + KP   +               
Sbjct: 65  QVCREIRRENNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYTA 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +     K S    E   + +          G+   +P +E  +L +L  +  +   + 
Sbjct: 125 TQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Q+   I+G ++   +   V+ HI +LR+K+ +      + +   +GY  +
Sbjct: 185 QLLDHIWG-YEYVGDTRTVDVHIKRLREKIHDH-EKWSIGTVWGVGYKFE 232


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                        +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 234


>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 225

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   + D        +G              L  S   D+  ++  L    G +V
Sbjct: 4   ILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMGMEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            ++ +     + +P+I ++        +  F+ G DD V KP   RE    +  V     
Sbjct: 64  CKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLRRSL 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K        GP+ + ++     V+G+   L   E ++L  L    G+  ++  +   +
Sbjct: 124 PDKPEGKVINVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRDLLLKNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++HI++LR KL      + + + R  GY ++ 
Sbjct: 184 WG-YNYVGDTRTVDTHITRLRTKLGQAG--ELIKTVRGFGYKMEE 225


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              + + D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G + +  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    D  S+      E    L    + D+  ++  L       +
Sbjct: 5   ILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLML--PKVNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           EL + IR  S+VP++ IS   S          G DD ++KP    E           A +
Sbjct: 63  ELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A                + +       +V+G+  PL  +E  IL+ L+ N  +   K Q
Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I+  I+   D    ENV+  HI +LR+K+  +  G   + +   +GY +
Sbjct: 183 IYQLIW-EEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGYKM 230


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +   ++ E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +       ++G S     + E    L    R D   ++  L   G   L
Sbjct: 5   ILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLML--PGIDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P++ ++        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 63  EVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLRR 122

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    K  N   + GPI +    R  + +GE+  L  +E  +L     N GK + +
Sbjct: 123 AEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVITR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +I + I+G +D   E   V+ HI +LRKK+  +      + + R +GY +
Sbjct: 183 DEILTKIWG-YDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKL 232


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A ++         +G  +   ++      L  +   D++ ++          
Sbjct: 4   LILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIM--MPQLNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R +R  S +P++ +S        +   + G DD + KP +  EI+ARV A  RR  
Sbjct: 62  FELTRALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRAS 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +       + + +        G+   L   E +IL  LM + G+   K Q++    G
Sbjct: 122 RSGSDILTVRELTLDTTTFQLTKNGKQILLTPMEYKILALLMRSPGRIYTKIQLYEGAIG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            +    ++N +  HISKLR K+ +       + + R LGY ++ 
Sbjct: 182 NY-FEGDDNTMMVHISKLRDKIEDDPKSPRYIITVRGLGYKLEK 224


>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
 gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
          Length = 242

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G  ++            ++   D+  ++  L   G   LE
Sbjct: 15  LVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLML--PGMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR + +
Sbjct: 73  VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRPA 132

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A          V    R    +G    L  RE  +L + + + G+  A+ ++   ++
Sbjct: 133 PAAASGPLRAAGLAVDPAARRATKRGAELALTVREFDLLAFFLRHPGRAFAREELMREVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G      + + V  H+ +LR K+ +       V +   +GY  D
Sbjct: 193 GWD--FGDLSTVTVHVRRLRGKVEDDPARPRLVQTVWGVGYRFD 234


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G ++   N  E      +  +     ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLML--PKLDGVE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           + + +R      P++ ++        +   + G DD + KP   RE++AR          
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++       G +++  D  +   +GE   L  +E  +L YL  ++G+ + + Q+ S+
Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 184 VW-NYDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKLE 228


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        ++G  +      +    L      D+  ++  L        
Sbjct: 6   IMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVML--PNVDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR  SQVP+I ++        L  FD GVDD V KP   +E++ARV         
Sbjct: 64  TVCRQIRQGSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSRG 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   +   + +    R   +  E   L  +E  +L +L ++ G+  ++ Q+   +
Sbjct: 124 NANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++H+  LR KL N      + +   +GY  D
Sbjct: 184 WG-YDFYGDSRTVDAHVKNLRSKLGNYG--RYIVTVWGVGYKFD 224


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    + E           D+  ++  L        
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                + G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 TVTVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +G  +      +    L    +  +  ++  L       +
Sbjct: 8   ILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWML--PVYDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S+VP+I ++   S        D G+DD + KP    E+         R+  
Sbjct: 66  TVLRRIRKKSEVPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++ + S      GP ++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 SNKQKENSTISFNFGPFKIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R K+ +      + + R LGY +
Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKIGDP-NKKLIQTVRGLGYCL 229


>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 226

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD AL++         +G  +      +    + +  + D+  ++      G    
Sbjct: 4   ILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVM--MPGYDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116
            + R IR  S VP+I I+        L  +D GVDD + KP   + ++A++ A       
Sbjct: 62  TVCREIRRTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +      + +  +     + G+   L   E ++L YLM N GK +++ QI + 
Sbjct: 122 EGEENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  ++   +   V++HI++LR KL N+     + + R  GY  D 
Sbjct: 182 VW-NYEYYGDLRTVDTHINRLRIKLGNRGS--YIQTVRGYGYRYDK 224


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +  +    +D   ++        E + S  R D+  ++  L   G+   
Sbjct: 5   ILVVDDDSNICELLVVYLEED-FQVKTVFDGNNLEQVISEYRPDLILLDVML--PGKNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ R IR   ++P+I +S        +   + G DD + KP   RE++ARV      +  
Sbjct: 62  DICREIRDKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R     +      + +  + R  +V      L  +E  IL  +  + GK   + +I + I
Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +G +D A E   V+SHI ++R+K+       + + +   LGY  + 
Sbjct: 182 WG-YDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGYRFEV 226


>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G ++             +  R D+  ++  +         
Sbjct: 10  LVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAP--DGFT 67

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     P L+ ++   ++   +    +G DD V KP    E++ R+ AI RR++ 
Sbjct: 68  VARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRP 127

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  + + G +R                G    L   E  +L YLM N  + V+K QI   
Sbjct: 128 AQEQVDDGVLRYADLELDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDR 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  +VES+IS LR+K+ +  G   + + R +GY +
Sbjct: 188 VWD-YDFEGESRIVESYISYLRRKI-DAEGPPLIHTLRGVGYRL 229


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A + +       + G  +   ++      L  S   D++  +           
Sbjct: 5   ILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIM--MPEMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S +P+I +S   +    +   D G DD + KP +  E++ARV +  RR   
Sbjct: 63  ELTKRVRITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKYK 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++ A             + +     +  GE   L   E +IL  LM   G+   K QI+
Sbjct: 123 LDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
             I G +    ++N +  HISKLR+KL +       + + R LGY I+ 
Sbjct: 183 ERINGEY-FENDDNTMMVHISKLREKLGDDSKRPKYLKTVRGLGYKIEK 230


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +   ++     E    L       +  ++          +E
Sbjct: 7   LIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVM--MPKIDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R H+ VP++ ++        +     G DD + KP    E+LAR+ A+ RR    
Sbjct: 65  VCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  +   + +          G+   L  +E  +L++  +N G+   KTQ+F
Sbjct: 125 GSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +       ++N V  HI +LRKK+  +      + +   +GY  
Sbjct: 185 RNAWS-DQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230


>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 224

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       +DG +       +    +  S   D+  ++           
Sbjct: 4   ILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIM--MPIMDGW 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 62  TLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGSTQTVHFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFAETPDFR-IETVRGLGYRLEV 222


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E  + L      D+  ++  L   G   +E
Sbjct: 47  MIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWML--PGLSGIE 104

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +        VP+I I+        +   D G DD V KP    E+LAR+ A+ RR+
Sbjct: 105 LCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVMRRI 164

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +        G I +               L   E R+L++L+ + G+  ++ Q+   +
Sbjct: 165 RPALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLLDTV 224

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  D  VE   V+ H+ +LRK L +K   DP+ + R  GYS+D 
Sbjct: 225 WG-SDVYVEARTVDVHVGRLRKALNDKGEKDPIRTVRSAGYSLDE 268


>gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
 gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
          Length = 229

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    +   +G + +     E      + +  D+  ++  L   G   +
Sbjct: 5   ILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWML--PGISGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++        PLI ++     +  +   + G DD + KP    E++ARV A+ RR
Sbjct: 63  DLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRR 122

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +R        ++        + G    +   E R+L + + +  +  ++ Q+   
Sbjct: 123 SAPLLSREVVEVDGLKLDPSSHRLSIGGLPLEMGPTEFRLLHFFITHPERVYSRGQLIDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWG-DNVYVEERTVDVHIRRLRKSLEPSGHDRLIQTVRGVGYRF 225


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    + E           D+  ++  L        
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                + G + V ++ R     G+   L   E  +LE L    GK V 
Sbjct: 124 TVSVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +  + ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
 gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    + +    D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIML--PKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAGS 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E   +          + R   +  +   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 QPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           ++G ++   +   V+ H+ +LR+K+  N      V +K  +GY
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGY 225


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    L      D+  ++  L        
Sbjct: 27  ILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVML--PKLDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R IR  S VP+I +S   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 85  AVCRRIRGESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 144

Query: 120 -----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                       V     + G + V ++ R     GE   L   E  +LE L  + GK V
Sbjct: 145 GASSVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVV 204

Query: 169 AKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 205 PRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 19/238 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +   +  E    +      D+  ++  L        
Sbjct: 28  ILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVML--PKLDGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 86  AVCRRLRAESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 145

Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             + AE   I             V ++ R     GE   L   E  +LE L  + GK V 
Sbjct: 146 GASVAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVP 205

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY---SIDW 222
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY    ++ 
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRLNE 263


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +   + E       +    +  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E   + +          G    +P +E  +L +L A+  +   + Q
Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPSWGL-STVWGIGYKFEV 232


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +          +G  +      E           D+  ++  L    G +V
Sbjct: 6   ILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R       VP+I ++        +   D+G DD V KP    E+    R      R
Sbjct: 66  CRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRLR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ +R   G I +       +  G    L   E R+L++ M + G+  ++ Q+  A++
Sbjct: 126 PGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G  D  VE   V+ HI +LRK L      DP+ + R  GYS+D +
Sbjct: 186 G-SDVYVEARTVDVHIGRLRKALNAADAGDPIRTVRSAGYSLDVD 229


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +   + E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E   + +          G    +P +E  +L  L ++  +   + Q
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+KL++   +    +   +GY  +
Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKDHPQWKL-GTVWGIGYKFE 231


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G      N  +    L  S +  +  ++  L       +
Sbjct: 5   ILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLML--PSMDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P+I ++        +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 63  EVCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRAS 122

Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +       + D  +  +  E      +E  +L YLM N+ + + + Q+
Sbjct: 123 NVPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            SA++  +D A +  +V+ HIS LR+K+         + + R LGY  + 
Sbjct: 183 LSAVW-KYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFEE 231


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       D + ++     E    L      DV  ++  L        
Sbjct: 4   ILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVML--PKFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 62  EVCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N R       V          D R   +  +   L  +E  +LE L  N  K  ++ Q+
Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + ++G       +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +E     +         + ++  ++  L       +
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLML--PKLDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR      P+I ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 63  EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +RV+ +  +  +Q E      +E  +L YL+ N+ + + +
Sbjct: 123 QNVVADDKDVAQEKMYEFGQLRVYPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY  + 
Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234


>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 234

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E           ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E        +     
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + V         +     +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E          L ++ R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTS 122

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                           +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 123 PDEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E +I  LR+K         + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYIGYLRRKTEASGEPRLIHTVRGVGYVL 225


>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 232

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++      E    L  +   D+  ++  L    +   
Sbjct: 6   ILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIML--PKKDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  S VP+I ++   +   T+   + G DD V KP   R     + A++     
Sbjct: 64  AVCRDIRRVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQA 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        ++V +   +    G    L  RE  +L YLM N G  +++ ++ S +
Sbjct: 124 AKGPGGEFLICDDLQVDTGRMEIRKNGVDIDLTYREYLLLVYLMRNAGYVISREKLLSEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           +G +D   +E  V+  I +LR+K+         + +KR  GY
Sbjct: 184 WG-YDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGY 224


>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis CS]
          Length = 232

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWML--PGASGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  SLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                          ++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +          G+   L  +E  +L++  +N  +   KTQ+
Sbjct: 124 LGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 22  ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 80  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 139

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 140 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 200 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 247


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A  ++        +G  +    S +    L      D+  ++  L    G +V
Sbjct: 6   ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       +P+I +S        +   ++G DD V KP   +E++ARV A  RR +
Sbjct: 66  CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRTR 125

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    + +   I +  +       G    L   E R+L  LM   G+   + Q+   ++
Sbjct: 126 PAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDHVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V+   V+ H+ +LRK L  + G DP+ + R  GY+ 
Sbjct: 186 GR-DAFVDTRTVDVHVGRLRKALTAEGGSDPIRTIRGTGYAF 226


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  ++  ++         S+  D+  ++  L G     L
Sbjct: 4   LLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGP--DGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S +P+I ++        +   + G DD + KP   RE++AR+ AI RR+  
Sbjct: 62  SLCKEIRKISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVAA 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E            +  D R  EV+G    L  +E  +L ++    G+  ++  + 
Sbjct: 122 QPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +D   +   V++HI++LR KL  +     + +   +GY  + 
Sbjct: 182 ENVWG-YDFYGDLRTVDTHINRLRDKLNMEGTKQAITTVWGVGYKFEV 228


>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 233

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +       ++G S       E    +  +   D+  ++  +    G ++
Sbjct: 5   ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMDGLEL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  ++   VP++ +S        +    +G DD + KP +  E+ ARV ++ RR  
Sbjct: 65  CRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRRSY 124

Query: 121 VSNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +  A++           ++       E  G +  L   E  IL  L +  G+  +  +
Sbjct: 125 QYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IF  ++         N V  HISKLR KL  + G   + +   +GY ID
Sbjct: 185 IFQHVWREKYFE-SNNTVMVHISKLRDKLEQETGDKLIATVWGVGYKID 232


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +A  D+  ++           
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 70  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 130 NGAPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ D        +G ++   +       L  + + D+  ++  L        
Sbjct: 4   ILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAIY 116
            + RI+R  + +P++ ++        +   + G DD V KP        R          
Sbjct: 62  SVCRILRRETNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRRTDR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   V         ++V +  R          L ++E  +L  LM NRG  +++  +   
Sbjct: 122 QPTGVERELLTAANLKVDTGSRRVFRDNNEITLAQKEFDLLVCLMRNRGMALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G +D   +   V+ H+  LR+K+  +      + + R +GY  +
Sbjct: 182 VWG-YDFPGDSRTVDVHVRWLREKVEVDPSNPIYIQTVRGIGYRFN 226


>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
          Length = 241

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +    +E     +             D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLR-KKLRNKLGFD-PVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR  K+ N       + + R LGY ++ 
Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEE 236


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 62  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 121

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E     +             D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 122 MAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++ 
Sbjct: 182 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 234


>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +   ++G  +           L  S + D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIML--PGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR + 
Sbjct: 64  EVCRQLHRETTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRA 123

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +                 +  + R+ E  G    L  RE  +L  L +  G+   + ++ 
Sbjct: 124 ARVLDVHQRPVLQFAGLLIDPERREVERNGIRVDLTPREFDLLYTLASYPGRVFTREELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D A  + VV+ HI  LR+KL +   G   V + R +GY  
Sbjct: 184 QRVWG-PDFAGIDRVVDVHIGTLRRKLDDDQHGTPLVQTVRGVGYKF 229


>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G ++                  D+  ++  L   G    
Sbjct: 5   ILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +RA S VP++ ++        +   ++G DD V KP   RE++ARV A  R  + 
Sbjct: 63  EVCAALRAESNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +   G        +  L   E  +L  L     K  ++ ++   ++G 
Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGYR 221


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    +           D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R +R  S VP+I ++    ++  +   + G DD V KP   RE++ARV       + 
Sbjct: 66  RVCRAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G + +   G    V+G    L   E ++L  L    G+   + ++   +
Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +           +      D+  ++           
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVM--MPRLDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++    +   +   + G DD + KP   +E+ +RV  I RR+  
Sbjct: 73  GVCRAIRKTSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGS 132

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             + ++ R      E   L   E  +LE L +  G  V++ ++ 
Sbjct: 133 LKPFNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELL 192

Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  +   V+  VV+ H+S+LR KL+   +G + + + R +GY++
Sbjct: 193 EKVWGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTL 240


>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
 gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +    +   + +        +   +  ++  L        
Sbjct: 4   ILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLML--PDMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S++P+I ++        +     G DD + KP +  +++ARV A   R   
Sbjct: 62  EICRQIREISEIPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIARFDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +          + +    R   V  +   L  +E  +L ++ ++  +  +K  + 
Sbjct: 122 LVSRGQNKEEDMRIRGLHIQPVTRKVFVNSQEKVLTAKEFDLLLFMASSPNQVFSKEHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G FD   +   V  HI +LR+K+  +    D +++   +GY  
Sbjct: 182 EQVWG-FDFYGDVTTVTVHIRRLREKIEKDPSDPDYIETVWGVGYRF 227


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G       + +       S R D+  ++  L   G+  L
Sbjct: 5   ILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  R  + 
Sbjct: 63  EVCREIREESGVPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     + G + +   G   E  G+   L   E  +L  L     +  ++  +   ++G 
Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+       D V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGYK 221


>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 227

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G + E                     ++  L   G    
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLML--PGLDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   +    P+I ++        +   + G DD V KP   RE++ R+ ++ +R
Sbjct: 64  EVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKR 123

Query: 119 LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +        V        + G    L   E ++L  L  + G+ + + ++ +
Sbjct: 124 HAPEPEKRQVLARDGLSVDMAAHRVSLDGAEVALTATEFKLLAELFQSAGRVLTRDRLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G ++       V++H+ +LR+KL +    D +++ R +GY  
Sbjct: 184 SVWG-YEFEGYARTVDTHVRRLRQKLGHF--ADMIETVRGVGYRF 225


>gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
          Length = 236

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E    L  +   D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNL--PDTTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ ++V ++ ++        +  FD G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +    R+  ++     L   E  +L  L    G+   ++++   +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  ++   E+ VV+ HI ++RKK+         + + R +GY  D
Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227


>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 244

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +             ++   D+  ++          L
Sbjct: 11  ILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDI--QMPRMDGL 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S  P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 69  TAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 128

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   A   P          R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 129 YAAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 189 QILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 236


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N     G           +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 232

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 84/223 (37%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  +    S E           D+  ++  L   G    
Sbjct: 8   ILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIML--PGIDGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           E+ + I A   +  +I ++        +   + G DD + KP +  E+ AR+        
Sbjct: 66  EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +      G + +               L   E  +L++ M N+GK + + +I +A+
Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G  +   +   ++ HI +LR+K+ +     D + +    GY 
Sbjct: 186 WGE-NYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYR 227


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +  E L   ++ D+  ++  L   G   +
Sbjct: 4   ILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWML--PGLSGI 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA S   ++P+I ++        +    +G DD V KP    E++ARV AI+RR
Sbjct: 62  ELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRR 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V +   ++G I +  +       G    L   E R+LE+LM+  G+  ++ Q+   
Sbjct: 122 ALPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLDG 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY+ +
Sbjct: 182 VWG-HDVYVDERTVDVHVGRLRKAINKGRMKDPIRTVRGAGYAFN 225


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMML--PGIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +   + G DD V KP   +E    +  V   Y  
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D       V+ HI +LR+KL N      +++   +GY  + 
Sbjct: 186 G-YDYPGYSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++           
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 70  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 130 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237


>gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 234

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S +   S      +    + D+  ++  L   G   L
Sbjct: 3   ILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLML--PGLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109
           E+   IR         ++ ++        +    +G DD + KP    E           
Sbjct: 61  EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +       +     +       +  +  +      E+  L   E  +L   M+  G+  +
Sbjct: 121 SLRHGGQVQQIYRTSHFTVDLDQHIATRQLDNEDSEILDLTTLEFNLLSTFMSYPGRVWS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +TQ+   ++G  D   +E VV++HI +LRKK+  +      + +   +GY  +
Sbjct: 181 RTQLIDKLWGN-DFFGDERVVDTHIRRLRKKVEPDPANPSFIKTVIGVGYKFE 232


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +A  D+  ++           
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 70  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 130 NGVPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237


>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 253

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L  S   D+  ++  L         
Sbjct: 14  LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVML--PKLDGFA 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR++ I RR+   
Sbjct: 72  VCRRLRAESCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G + V ++ R      E   L   E  +LE L    G+ V +
Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +I   ++G     A +  VV+ ++++LR KL       + + + R +GY 
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYC 242


>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
           pseudintermedius ED99]
          Length = 241

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +   +       + +        ++  L       L
Sbjct: 6   ILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLML--PEMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R     P+I ++        ++ F+SG DD + KP   RE              
Sbjct: 64  EVAVKLRELKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTES 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +    + +  E   + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 124 SKAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 184 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEV 234


>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
          Length = 235

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              + + D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 7/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIG-KGE 58
           M  +++D   +++         G    GF +       L    + ++  ++  L G  G 
Sbjct: 1   MIFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGI 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
            +L   R   A   +P+I ++   +    +   DSG DD + KP    E+++RV A    
Sbjct: 61  SILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRR 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G ++++ +    +  G    L  +E ++L  L+ ++G  + + Q+ + 
Sbjct: 121 SSRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLLTN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G +D   E   V+ HI  LR+KL        +++ R +GY I  N
Sbjct: 181 IWG-YDFDGETRTVDVHIRSLRQKLGECG--KLIETVRGIGYRIGGN 224


>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus thermophilus ND03]
          Length = 235

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              + + D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G      ++      +    + D+  ++  L   G   +E
Sbjct: 9   LIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIML--PGVDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + + IR  S++P+I ++        +   + G DD + KP   +E    +  V   Y   
Sbjct: 67  VLKWIRKSSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNYD 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        + + ++  +   +G    +P +E  +L YL +N+ K   + Q+   ++G
Sbjct: 127 EKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+K+ +      +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKI-SGGENWLIETVWGVGYKFEV 227


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +    + D+  ++  L        
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVML--PRLDGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I      
Sbjct: 86  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGP 145

Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  R L V       G + V ++ R     GE   L   E  +LE L    G+ V 
Sbjct: 146 GSATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVP 205

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL       + + + R +GY
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +    +G ++    + +           D+  ++           
Sbjct: 7   ILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVM--MDEMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
              + IRA SQ+P+I ++        +     G DD + KP   R     I   +     
Sbjct: 65  TACKEIRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQG 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V +       +R+   GR   V G+   L ++E  +L +L+ +RG+   +  +   +
Sbjct: 125 IQQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRL 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G+  +      V++HI  LR KL  K     + +   +GY  + +
Sbjct: 185 WGMDTQQGTLRTVDTHIKTLRLKL--KPADRFIKTVWGVGYKFEVD 228


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 18/236 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E         R D+  ++  L    +  +
Sbjct: 5   ILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLML--PKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R H    P++ ++        +   + G DD + KP   RE++ARV AI RR++
Sbjct: 63  EVCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQ 122

Query: 121 VSNNRAETGPIRVF-------------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                 E   +                 +  +   + E   L  +E  +L YL  N+G+ 
Sbjct: 123 QMTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + + Q+ SA++  +D A +  +V+ HIS LR+K+  +      + + R LGY ++ 
Sbjct: 183 LTRDQLLSAVW-NYDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLEE 237


>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
 gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
          Length = 229

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +++         G  +    S E  + L  +A  D+  ++  L G  G + 
Sbjct: 5   ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQSGIEF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R      +VP+I ++     Q  +   ++G DD + KP   RE+ AR+ A    R 
Sbjct: 65  ARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++  E   +R+          G+   L   E R+L + M +  +  +++Q+   ++
Sbjct: 125 PQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR  L        V + R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRSALEPSGHDALVQTVRGTGYRF 225


>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
 gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
          Length = 234

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E           ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E        +     
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + V         +     +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231


>gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 246

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A    +G  ++             + + D+  ++  L   G   L
Sbjct: 22  ILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVML--PGFDGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ 
Sbjct: 80  EVCRRVQATRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   A T            +    R   V+G    L   E  +L  L       +++ Q+
Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGVDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 LAEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + +    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 229

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   +++         G  +   ++ E    L  +A  D+  ++  L  G G  +
Sbjct: 5   ILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGSGIDI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +  R      QVP+I ++     Q  +   ++G DD + KP   RE+    +     R 
Sbjct: 65  AKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++  E   +R+          G    L   E R+L + M +  +  ++ Q+   ++
Sbjct: 125 PQMTDDAVEVKGLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRSSLEATGHDGLIQTVRGTGYRF 225


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +   + E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E   + +          G    +P +E  +L  L ++  +   + Q
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+KL++   +    +   +GY  +
Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKDHPHWKL-GTVWGIGYKFE 231


>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
 gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
          Length = 232

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWML--PGMSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  SLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                          ++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDIIDVGGLKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPTGHDAHVETVRGSGYRF 225


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +          G+   L  +E  +L++  +N  +   KTQ+
Sbjct: 124 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230


>gi|332705560|ref|ZP_08425638.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332355920|gb|EGJ35382.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 87/225 (38%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +         ++     +           D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLILRFLSQKNFQMQAAQDGKTALATFEQFNPDLVILDVNL--PDALGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117
            L + +++ + V ++ ++           F  G DD + KP   +E+  RV         
Sbjct: 64  NLCQQMQSRTDVFVLLLTSRSDAADKNQGFQQGADDYITKPFDLQELENRVRAILKRKRA 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +   + PL   E  +L +L  + G+ + ++++   +
Sbjct: 124 VTATEAERLVFDHLVIDPGRREVTIDEILIPLTALEFDLLHFLACHPGRVLRRSELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  +D   ++ VV+ HI ++R+K+  N      + + R +GY  +
Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRRKIEVNSSDPSLIQTVRGVGYKFE 227


>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 231

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 225

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++         +G  +    + +    + +S +  +  I   ++       
Sbjct: 6   ILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQ-SIDLIILDIMMPELDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++        L  FD G D+ + KP     ++ARV A+ RR   
Sbjct: 65  SVCRQIRKSSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRRSGN 124

Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +    +    + +   GRD  + G    L  +E  +L +L  N+G  +++ QI ++++  
Sbjct: 125 AEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSVWD- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V++HI KLR KL +K   D + + R LGY  + 
Sbjct: 184 YDYFGDARTVDTHIKKLRLKLGDKG--DFIQTVRGLGYKFEV 223


>gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNL--PDTTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ ++V ++ ++        +  FD G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +    R+  ++     L   E  +L  L    G+   ++++   +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  ++   E+ VV+ HI ++RKK+         + + R +GY  D
Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++     E    L +  + D+  ++          +
Sbjct: 12  ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLM--MPKIDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 70  EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R E   I +         +G+  PL  +E  +L +   N  +   K+Q+
Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G  +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    S E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKID 230


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++     E    L +  + D+  ++          +
Sbjct: 12  ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLM--MPKIDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 70  EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R E   I +         +GE  PL  +E  +L +  +N  +   K+Q+
Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G  +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236


>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 253

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L  S   D+  ++  L         
Sbjct: 14  LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVML--PKLDGFA 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 72  VCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131

Query: 123 NNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           N   E+  +               ++ R      E   L   E  +LE L  + G  V +
Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
 gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G  +    +      +      D+  ++  L   G    E
Sbjct: 5   LVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLML--PGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 63  VCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTAD 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  +  E GP+R+  +     V+GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 DTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ HI +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGYKFE 225


>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
 gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
          Length = 229

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++     F  +G  +    + +      +    D+  ++  L   G   +
Sbjct: 8   ILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWML--PGVSGI 65

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           E+ R I+       +P+I +S        +   ++G DD V KP    E+   AR     
Sbjct: 66  EICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRR 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R            I +  +       G    L   E R+L  LM   G+  ++ Q+   
Sbjct: 126 TRPATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRVWSREQLLDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 186 VWGR-DIYVDSRTVDVHVGRLRKALMIHGGTDPLRTVRGAGYAL 228


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  +I  G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLD--MILPGIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +   + G DD V KP   +E    +  V   Y  
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL N      +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E          L +S R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAI 115
           E+ R +R+     P++ ++   S+   +   D+G DD + KP        R         
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTT 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + +    R+         L R E  +LE L+AN  + + +++I  
Sbjct: 123 PDDGAGESAAMTFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRILE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 226


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +          +G         E        ++ D+  ++  L    G +V
Sbjct: 6   ILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R+      +P+I ++        +   D+G DD V KP    E+    +      R
Sbjct: 66  CRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRAR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G I++           +   L   E R+L++L+ N G+  ++ Q+ +A++
Sbjct: 126 PSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  VE   V+ HI +LRK L      +P+ + R  GY+++
Sbjct: 186 G-SDVFVEARTVDVHIGRLRKALNAHGHQNPIRTVRSAGYALE 227


>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
 gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
          Length = 238

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R     P++ ++        +  F+ G DD + KP   RE           A+ +
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFNRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 232

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                 +   D+  ++  L   G   +
Sbjct: 12  ILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLML--PGMNGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ RIIR  S VP++ ++        +   +SG DD +NKP   +E++AR+ A  RR + 
Sbjct: 70  DICRIIRQESAVPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELIARLRARLRRTED 129

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +         +   G +     E   L   E  +L  L +  G+   + ++   ++G 
Sbjct: 130 SPSETIEIGDLTIDVLGHEVTRGDEEIQLTPLEFDLLLELASKPGQVFTREELLQKVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 189 YRNASDTRLVNVHVQRLRSKIEKDPENPHIVLTVRGVGYK 228


>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 234

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   N+      +  +    +  ++  L   G    
Sbjct: 6   ILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLML--PGLDGF 63

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +   +    + +I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  DVCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E+  +++  D  +  +  +   L  +E  +L+ L+ N+GK + +  + 
Sbjct: 124 TYPGVDIEENSYESQGLKIDFDRHEVFINNQKIELTLKEFDLLKILIKNKGKILQRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E          L +S R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTS 122

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E+  +           R+         L R E  +LE L+ N  + + +++I  
Sbjct: 123 PVDGDGESAAMTFSDLTLDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTRSRILE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 226


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +           G  ++     +      + A  D+  ++  L    G +V
Sbjct: 13  ILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPALSGLEV 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R       +P+I ++     Q  +   D+G DD + KP     ++AR+ A      
Sbjct: 73  CRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRRSG 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +  D       G    L   E R+LE+ + + G+  ++ Q+  A++
Sbjct: 133 GVATKGTLAWHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  VE   V+ HI +LRK +  +   D + + R  GY++D
Sbjct: 193 GR-DIHVEPRTVDVHIRRLRKAVNGEGEVDIIRTVRSAGYALD 234


>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
 gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
          Length = 230

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S++   + E           D+  ++  L   G    
Sbjct: 8   ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIML--PGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           EL R +RA +  P++ +S   +    +   + G DD + KP   RE++ARV         
Sbjct: 66  ELCRRLRARTASPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRL 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++     G + +       +       L  RE  +L  LM   GK   + ++    
Sbjct: 126 EDSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  ++   E   V++HI +LR KL       + +++ R  GY  
Sbjct: 186 WD-WEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGYRF 228


>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD + ++        + G   +   + +        A  D   ++          + 
Sbjct: 7   LLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIM--MPEMDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S +P+I ++        ++   +G DD V KP    E+             +
Sbjct: 65  VCKEIRKTSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E GPIR+    R  E  G++  L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 GQQEELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--CIQTVWGVGYKFEV 223


>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus LMG 18311]
          Length = 235

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              + + D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +          G+   L  +E  +L++  +N  +   KTQI
Sbjct: 124 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 V  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
 gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
          Length = 236

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              +   D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 122 IETAAAEESSNSGKKEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E           ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E        +     
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + V         +     +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231


>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +++     F  +G  +              + + D+  ++          LE
Sbjct: 8   LIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIM--MPVLDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
           + + +R  S +P+I ++   S    +   + G DD ++KP + RE++AR           
Sbjct: 66  VCKQVRKISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLRRTNAS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   + +          G       +E  +L  L +N G   ++ Q+   I
Sbjct: 126 MSSQNKQVLEYPNLMINLSEYRVVAFGREITFTAKEMELLWCLASNPGIVFSRNQLLEKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G +    +   V++HI ++R KL         + +   +GY  + 
Sbjct: 186 WG-YTYYGDTRTVDTHIKRVRHKLDIPPDSTWDIMTVWGVGYKFEV 230


>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 241

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H + P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233


>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
 gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
          Length = 241

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +          +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVATQLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 TTPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + N
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVN 234


>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           N1-067]
 gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           S4-171]
          Length = 238

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R +   P++ ++        +  F+ G DD + KP   RE           A+  
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQT 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V+G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEGASGAPGDIITFPHLKIDNEAHRVIVEGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEV 235


>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 218

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLML--PKMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R      P++ ++        +   + G DD + KP   RE            +
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N      +++  +  +   +GE   L  +E  +L YL  N+G+ + + 
Sbjct: 123 LQEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           Q+ SA++  +D A +  +V+ HIS LR K+ +       + + R LGY ++ 
Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLEE 233


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             E   + V          G+   +P +E  +L +L ++  +   + Q
Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ H+ +LR+K+++K  +  + +   +GY  + 
Sbjct: 185 LLDNIWG-YEYVGDTRTVDVHVKRLREKIKDKPTWR-IATVWGIGYKFEV 232


>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 268

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 19/238 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+   +      G  +      E    L    + D+  ++  L         
Sbjct: 26  MVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVML--PKLDGFA 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 84  VCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 143

Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   E   +             V ++ R     GE   L   E  +LE L    G+ V +
Sbjct: 144 SATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 203

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY---SIDWN 223
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R  GY    +  N
Sbjct: 204 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGYASQRMGEN 261


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ +      +    L      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVML--PELNGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + ++IR  S VP+I ++        +   + G DD V KP +        + + R     
Sbjct: 64  VCQMIREKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKGR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ + +     +G +R+  D R   +      L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 KQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ H+ +LR+K+         + +K  +GY  
Sbjct: 184 VWG-YDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGYFF 227


>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 232

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +      D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         R+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         +    +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 232

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +  +++ D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A ++D        +G +++  N              D+  ++           
Sbjct: 5   ILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIM--MPNLDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119
            + ++IR  S VP+I ++        L  F+   DD + KP                   
Sbjct: 63  GVCKMIRKTSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +S+N      +++  D    E+ G+V  L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 123 TISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +  +V++HI  +RKK+        + + + +GY++D N
Sbjct: 183 -YDYYGDTRIVDAHIKNIRKKITLP----YIKTVKGIGYTLDKN 221


>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     A    +G S+                  D+  ++  L         
Sbjct: 4   LVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVML--PSLDGWG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD V KP   +E+LAR+ AI+RRL+ +
Sbjct: 62  VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + R     I          + R   + G    L   E ++LE  +A+ G+  ++ Q+   
Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   +     E  V+SHI  LRKKL         + +   +GY +
Sbjct: 182 VQD-YAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++++        +G ++           L    + D+  ++  L       L
Sbjct: 8   ILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVML--PELDGL 65

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + I   +  + +P+I +S    +   +   + G DD V KP   RE+LAR+ A  R 
Sbjct: 66  EVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLRE 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIF 174
            K ++    T       +                L  +E  +L   M    +  ++  + 
Sbjct: 126 EKRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +  + +   V+ HIS LR KL++      ++S R +GY +  N
Sbjct: 186 QKVWG-YTISGDTRTVDVHISNLRSKLKSIS--PIIESVRGVGYRLAVN 231


>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 232

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  ++     +           DV  ++  L   G    E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVML--PGHDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQTIREFSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNKK 122

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  A+     V          + R   ++ +   L  +E  +LE L+ N  K  ++  + 
Sbjct: 123 SGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESLL 182

Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G     + +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 183 EYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYFF 230


>gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ E    +      D+  ++  L       +
Sbjct: 8   LLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLML--PKMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +    IR     P++ ++      + ++ F+ G DD + KP   RE++ RV+AI +R + 
Sbjct: 66  QAAEKIRESKNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  +     +          G    L  +E  +L YL  +  +   + Q+ 
Sbjct: 126 GKPKEKDNPDLIKMPHFEIDDQSHRVLADGNAVNLTPKEYDLLLYLAQSPDQIFGREQLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
             ++  ++   +   V++H+ +LR+KL          + +   LGY  +
Sbjct: 186 REVW-KYEFFGDLRTVDTHVKRLREKLTKHSEPAAKMIVTVWGLGYKFN 233


>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
 gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
          Length = 229

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   ++        + G  +    +++    +  +   D+  ++  L    G   
Sbjct: 6   ILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGVSW 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A + +P+I ++           F  G DD + KP   RE++AR+ A  RR  
Sbjct: 66  IAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRRAP 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N     G +++  + +     G        E ++L +LM +  +  ++ Q+   ++G 
Sbjct: 126 SGNAWRSAGRLQLNPETQRVTADGANIECSSSEFKLLHFLMTHPERVFSRRQLLDHVWGE 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  VEE  V++ I +LR+ L +    D + + R  GY  
Sbjct: 186 -DACVEERTVDTQIGRLRRLLESAGLSDYIQTVRGSGYRF 224


>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 218

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
 gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
          Length = 232

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F               D++ ++      G    
Sbjct: 5   ILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVM--MPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
            L   IR     P++ ++        +     G DD + KP H  E+             
Sbjct: 63  ALCAKIRDKYTFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLRRYTC 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               R K ++   E   + +  D     + G+  PL   E  IL  L  N GK ++  Q+
Sbjct: 123 YNEGRQKQNSAVIELHGLVIDKDTHTCSLYGKQLPLTPTEFSILWLLCENCGKVISSEQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           F  I+G        N V  HI ++R+K+         + +   +GY I+ 
Sbjct: 183 FHEIWGEKYFESSNNTVMVHIRRIREKMNEPARNPKFIQTVWGVGYKIEK 232


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       ++  D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 69  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 129 VGASGIPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 236


>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
           132]
 gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
 gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
 gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
 gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus MW2]
 gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
 gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 04-02981]
 gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
 gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
 gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 241

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233


>gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 282

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S + D+  ++  L    +  +
Sbjct: 48  ILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLML--PVKDGM 105

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----------HHREILAR 111
           ++ R +R     P+I ++   +    +   + G DD V KP            H     +
Sbjct: 106 DVCREVRGKLNTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLRRQIK 165

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A     K          + + +D       G+   L  RE  ++ YL  +  K + + 
Sbjct: 166 SEAAPEVAKEEPQGIRLDTLFIDTDMYVVYKDGDPLDLTHREFELIYYLAKHPSKVMTRE 225

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A++G ++   +   V+  I +LR+K+  +    + + ++R LGY +
Sbjct: 226 HLLQAVWG-YEYFGDVRTVDVTIRRLREKIETDPSKPEYIVTRRGLGYMM 274


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S+      +  E        D+  ++  L   G   +
Sbjct: 5   ILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWML--PGLSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +RA      +P++ ++        +     G DD V KP    E+    +     
Sbjct: 63  ELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +   E   I +  +       G    L   E ++LE+LM + G+  ++TQ+   
Sbjct: 123 AAPERISQTLEVEDIELDRETYRVMRSGREVRLGPTEFKLLEFLMESPGRVFSRTQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+E  V+ HI +LRK +      DP+ + R  GY++
Sbjct: 183 VWGR-DVYVDERTVDVHIGRLRKAINRGKEKDPIRTVRGAGYAL 225


>gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 262

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             +   D+  ++  L   G   L+
Sbjct: 11  LVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLML--PGMDGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------------- 108
           + R +R    VP+I ++        +   + G DD V KP   RE+              
Sbjct: 69  VCRALRGKGPVPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRTG 128

Query: 109 -LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A         +  +       I +    R     G    L  RE  +L +L+ + G  
Sbjct: 129 PRASAGVRSHAPERPDPVLRRAGITLDPTARRATKDGRELALTLREFDLLAFLLRHPGVA 188

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             + ++   ++G      + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 189 CTREELMRDVWGWD--FGDLSTVTVHVRRLRGKIEDDPAAPRLIQTVWGVGYRFD 241


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +  +        D+  ++  +   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMV--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R IRA  +    P+I ++        +    +G DD + KP    E+LARV A    
Sbjct: 63  ELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +    G I +         +G    L   E ++LE+LM + G+  ++ Q+   
Sbjct: 123 AKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ HI +LRK +      DP+ + R  GYS D 
Sbjct: 183 VWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFDE 227


>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G         E    +      D+  ++  L        
Sbjct: 5   ILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N +        +++       E   +   L  RE  +L++L+ N+G   ++  +   +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G + +  N  +  + +    + D+  ++  L    E  ++
Sbjct: 9   LIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIML--PQEDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + + IR     P+I ++        +   + G DD + KP   +E++ARV          
Sbjct: 67  VLKWIRKADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANSE 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS+       +++           +   +P +E  +L YL  N+ K   + Q+   ++G
Sbjct: 127 NVSSQVLNFNGLKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ H+ +LR+KL    G+D + +   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHVKRLREKLHEGNGWD-IQTVWGVGYKFEV 227


>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 223

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   +            + DV  ++  L   G   ++
Sbjct: 6   LVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLML--PGMDGMD 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123

Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    I     R+  +  +   + +   L  +E  +L YL  + GK +++ Q+ +A
Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           ++  FD A +  +V+ HIS LR+K+         + + R  GY ++ 
Sbjct: 184 VW-NFDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGYKMEV 229


>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 238

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R +   P++ ++        +  F+ G DD + KP   RE           A+  
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQT 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEGASGAPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEV 235


>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
 gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
          Length = 242

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGGTGIPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 ASPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +      E         R DV  ++  L   G   +
Sbjct: 7   ILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIML--PGMDGV 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P+I ++   +    +   D G DD + KP    E+         R  
Sbjct: 65  GVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEEL-LARMRAVLRRV 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V +  R+    G    L  RE  +LE L  N  + +++ +I   ++G 
Sbjct: 124 EGEEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V+ NVV+ ++  LR+KL        + + R +GY +
Sbjct: 184 G-AGVDPNVVDVYVGYLRRKLEGPGEGRLIHTVRGVGYVL 222


>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
 gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  +L  F + +         + D++ ++  L        
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  SICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 122

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+        V          D  +  +  +   L   E  IL  L +NRG+ V+  ++
Sbjct: 123 YNSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           FS ++G        N V  HI  LR+K+++       + +   +GY I+ 
Sbjct: 183 FSEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGYKIEK 232


>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 275

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +      G  G  +   +         ++ R D+  ++  L G G    E
Sbjct: 46  LVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPG-GMDGFE 104

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R IRA   VP+I ++        +   ++G DD V KP   R     + A +    R 
Sbjct: 105 VCRRIRARGPVPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWRRT 164

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       I +    R     GE   L  RE  +L + + N G+   + ++   ++
Sbjct: 165 EPGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMREVW 224

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G      + + V  H+ +LR K+  +      + +   +GY  D
Sbjct: 225 GWD--FGDLSTVTVHVRRLRGKVETDPARPALIQTVWGVGYRFD 266


>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 229

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G                     ++  ++  +  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   ++G DD + KP   +E+ AR+ A+ RR+ 
Sbjct: 65  IKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++         + +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225


>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 240

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A    +G  + G    +           D+  ++  L        
Sbjct: 8   ILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R +R  S VP+I ++    ++  +   + G DD + KP   RE++ARV       + 
Sbjct: 66  RVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    + G + +   G    V+ +   L   E ++L  L    G+   + ++   +
Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      +           D+  ++           
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVM--MPKLDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 74  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 133

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   + G +R+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 134 DSVAGIPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEIL 193

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 194 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 241


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  + +        +G  +      E           D+  ++  L   G    
Sbjct: 6   IMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIML--PGMDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R IR    +   P+I +S        +   + G DD + KP   RE+LAR+ A++RR
Sbjct: 64  EFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123

Query: 119 LKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++S    E  P +       +  D  + +++G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 MQLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRN 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKF 232


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++  +D+S I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV    +     
Sbjct: 65  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 125 SEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 185 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 223


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L  S   D+  ++  L         
Sbjct: 16  LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVML--PKLDGFA 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 74  VCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G + V ++ R      E   L   E  +LE L  + G  V +
Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +I   ++G     A +  VV+ ++++LR KL       + + + R +GY
Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 243


>gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 230

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +           G  +                  D+  ++  L   G   L
Sbjct: 11  ILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWML--PGISGL 68

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++    +   +   D+G DD V KP   +E+LAR+    +  K
Sbjct: 69  EVCRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPK 128

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +       + +    R          L  +E  +L YLM +  + + + QI   ++G
Sbjct: 129 GSGDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR K+        + + R +GY +
Sbjct: 189 -YDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228


>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            +++DD  L++          G      +  +    L S     D+  ++  L       
Sbjct: 6   ILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVML--PEYDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
             + R IR  S+VP+I ++        +   D G D+ ++KP     ++ARV        
Sbjct: 64  FTVCREIRKKSKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRAN 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + +        + GEV  L  +E  +L YL  N GK +++ QI   +
Sbjct: 124 SEDKGKELKDFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   +   V++HI++LR KL  K   D + + R  GY  + 
Sbjct: 184 WG-YDYYGDLRTVDTHINRLRIKLDRKS--DYIQTVRGYGYRFEE 225


>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D       ++G  +      E       +    +  ++          +
Sbjct: 4   ILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVM--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S  P+I +S        ++   +G DD + KP +  E+LARV A  RR   
Sbjct: 62  RACLKIREISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRRQAL 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+      + +       +++G    L   E  IL  L ++ G+  +   I+  
Sbjct: 122 IGKEEFNSLIIIKDLSIDKSKHSVKLKGNEISLTPLEFAILVLLASHPGQVFSSEHIYEN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++        +N V  HI  LR+KL         + +   +GY I+
Sbjct: 182 VWKAP-YGFSDNTVMVHIRNLREKLEQFPRDPLYIKTVWGVGYKIE 226


>gi|225378771|ref|ZP_03755992.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM
           16841]
 gi|225209363|gb|EEG91717.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM
           16841]
          Length = 217

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      ++   +      E    +  S    ++ ++  L    +  +
Sbjct: 3   ILIVEDDTAIREGVAEFLKENEYEVFCAEDGEKALEILKSKEIHLALLDIML--PKKNGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S++P+I ++     +T +  FD+  DD + KP     +L R+ A+ R    
Sbjct: 61  EVLKELRTFSELPVIMLTAVTDEETQVQTFDNLADDYICKPFSLILLLKRIEALLRARYK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N  +     V   G      G+   +  +E ++L  L+ N G+ V++ QI   I+G  
Sbjct: 121 TENTWKYKDAVVDFSGYRATYLGKDAAVTPKEIKLLAVLLENAGQVVSRDQILDRIWGEE 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +  VV+ ++  LRKKL+     D + + + +GY ++
Sbjct: 181 ESPFD-RVVDVYVKNLRKKLQL----DCIITVKGVGYKLE 215


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ R IRA +  P+I +S    +   +   + G DD + KP   +               
Sbjct: 65  QVCREIRARANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V              E   I +        V G+   +P +E  +L +L ++  +   + 
Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGWKL-ATVWGIGYKFEV 233


>gi|147676478|ref|YP_001210693.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272575|dbj|BAF58324.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD  +V++        +G  +           L +  + D+  ++  L   G   
Sbjct: 5   LILVVDDEEVVRELVRHCLVREGFKVITTADAYGAFDLIARLKPDLIILDILL--PGLDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARV 112
           +E  R +R  ++VP+I +S        +     G DD + KP             +    
Sbjct: 63  IEFCRKLRMKNEVPVIFLSAKGDSSDIILGLGVGGDDYIVKPFVPGELVARVKARLRRLK 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         +   + +  +G    V G    L  +E  IL  L  N  +     Q
Sbjct: 123 PGEETAAGREPKMLKYRGLEIDLEGHAVLVDGSAVALAPKEFEILALLAKNPNRVFKNEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+   D A +   +  HIS+LRKK+  +      + + R +GY  
Sbjct: 183 LLDLIWQSKDFA-DNRTLMVHISRLRKKIEKDPNNPAYIQTVRGVGYKF 230


>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
 gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
          Length = 247

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 69  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +    + +  +   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 129 TTVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 189 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 239


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVML--PGMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R  S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRTVREFSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPE 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + + + G +    GEV  L   E  +L  L +  G+  ++ ++   ++
Sbjct: 123 EADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           G + ++ +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 183 G-YRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGYK 223


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G  +    +      L      D+  ++  L   G    
Sbjct: 3   ILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLML--PGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R IR  S  P+I ++    L+  L   + G DD + KP   RE++AR          
Sbjct: 61  EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTHI 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++++      + + +   +   Q E   L   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + G  D   +E V+++HI KLR+KL         + +   +GY  +
Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLEGVPGDPKIILTVYGVGYKFN 225


>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
 gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           Finland 1988]
 gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           R2-561]
 gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           10403S]
 gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           J0161]
 gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
 gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
 gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J2-003]
 gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
 gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
 gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
 gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 238

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R     P++ ++        +  F+ G DD + KP   RE           A+ +
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    S E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLML--PGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE            + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A     +   +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGYKID 230


>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 231

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQHIQTIRGVGYKFTSN 230


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     +  +        D+  ++  +   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMV--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R IRA  +    P+I ++        +    +G DD + KP    E+LARV A    
Sbjct: 63  ELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +    G I +         +G    L   E ++LE+LM + G+  ++ Q+   
Sbjct: 123 AKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ HI +LRK +      DP+ + R  GYS D 
Sbjct: 183 VWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFDE 227


>gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 229

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G         +    L +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSLEEPIDVQGLMLDPISHRVTVGEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSNHDRLIQTVRGAGYRF 225


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    + E           D+  ++  L        
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                + G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 TVSVAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A ++D            +    + E    L    + D   ++  L G  G  +
Sbjct: 6   ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +  R     +  P+I ++        +  F+SG DD V KP   R ++ARV        
Sbjct: 66  AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + GP+++        V  E   L   E +++++ M +  +   + Q+   +
Sbjct: 126 PEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLDQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L      D + + R  GY  
Sbjct: 186 WGE-NVVVEERTVDVHIRRLRKLLDPVGAADYIQTVRGAGYRF 227


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +    + +           D+  ++  L        
Sbjct: 5   ILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLML--PEISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++AR     RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEH 122

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           + + ++ R  ++ GE   L   E  IL  L A+ G+  ++ QI   + 
Sbjct: 123 TPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+         + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKM 223


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      DV  ++  L        E
Sbjct: 5   LVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVML--PKYDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N R      +V          D R   +  +   L  +E  +LE L  N GK  ++ Q+ 
Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + ++G       +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 262

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+   +      G  +      E    +  +   D+  ++  L        
Sbjct: 22  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVML--PKLDGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 80  AVCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 139

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            N   E+  +               ++ R      E   L   E  +LE L  + G  V 
Sbjct: 140 GNAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVP 199

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 200 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250


>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++   +    +G  +             +     ++ I+           
Sbjct: 4   ILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVM--MPEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R    VP++ ++        +     G DD + KP    E++ARV A+ RR ++
Sbjct: 62  ELTRWLREERDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRI 121

Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + A    +    SD  + E  GE   LP +E ++L  L A+ G+ +++ ++   ++G 
Sbjct: 122 RADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D A +E  V+ HI +LR K    +    + + R LGY ++ N
Sbjct: 181 YDYAGDERTVDVHIKRLRVKFPEDVYPFRIRTVRGLGYRLEVN 223


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++     E    L +     +  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKF 230


>gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVITGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223


>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 237

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +          E    L      ++  ++  L   G    
Sbjct: 7   ILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREIL 109
           ++ R +RA SQVP+I +S    +   +   + G DD + KP               R   
Sbjct: 65  QVCRELRASSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A  +A  +      +  E   + V          G    +P +E  +L +L ++  +   
Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + Q+   I+G ++   +   V+ HI +LR+K+++      + +   +GY  + 
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDH-DKWALTTVWGIGYKFEV 235


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       + + ++  ++  L   G    
Sbjct: 6   ILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLML--PGIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ R IR  S  P+I +S    +   +   + G DD + KP   +               
Sbjct: 64  QVCREIRTRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E   I +        V G    +P +E  +L +L ++  +   + 
Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 184 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGWSL-STVWGIGYKFEV 232


>gi|299542039|ref|ZP_07052358.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           fusiformis ZC1]
 gi|298725462|gb|EFI66107.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           fusiformis ZC1]
          Length = 240

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A + +        +G   +   +++            D+  ++  L     + 
Sbjct: 6   ILVVDDEADLANLLKVSLQKEGYKQIYTASTIRDAWTSFQQTTPDIILLDVML--PDGEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R IR  S VP++ +S        +     G DD + KP   +E+  RV A  RR  
Sbjct: 64  YDLCRRIREVSHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRAG 123

Query: 121 VSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  T          P ++ +D  +    G +  L  +E  ++   M N  + ++K 
Sbjct: 124 YQTQDTITNIVEKTLQIGPFQLNADETEVHKNGVLLELTAKEIGLMACFMNNPNRILSKE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +F  ++G  D    +N V  HI +LR+K+  +      + + + LGY  
Sbjct: 184 TLFERVWGE-DFFGSDNTVMVHIRRLREKIEEDASNPLYITTVKGLGYKF 232


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +       +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   S
Sbjct: 63  VCRELRQRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGDS 122

Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  ++           R+  +     V G   PLP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 SGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGYKFE 228


>gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
 gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
          Length = 230

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D +  ++        +G ++    + E    L      D+  ++  +    G +V 
Sbjct: 10  LVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEVC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV +  RR++ 
Sbjct: 70  RRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRRVRP 129

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + +             L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 130 AATGERLEFEDIVLDASSHRVSRGKSELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 190 R-DIYVDTRTVDVHIGRLRKALTQFGGSDPLRTVRGAGYAL 229


>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G         E    +      D+  ++  L        
Sbjct: 5   ILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +R    +P++ ++        +   + G DD + KP   RE++ARV A  RR+  
Sbjct: 63  SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S N      +++       E   +   L  RE  +L +L+ N+G   ++  +   +
Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225


>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
           87.22]
 gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G   E            ++ R D+  ++          L
Sbjct: 13  ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDV--QMPRMDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A    P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 71  TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRST 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++       +R+    R+         L R E  +LE  MA+  + + + 
Sbjct: 131 YATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 238


>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A ++         +G  +                  +++ ++       +   +
Sbjct: 13  LVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIM--MPNKDGYQ 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           L R IR    +P+I ++    LQ     + +G DD + KP   +E+L R+ A+  R  +V
Sbjct: 71  LCREIREDYDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQRV 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +        +     +    G+   LP +E  +L  L +  G+   + ++   ++G  
Sbjct: 131 SADIIVLNGTAIDRKSYEVRSDGQTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWG-P 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D A ++  V+ HI +LR++  ++     + + R +GY ++ 
Sbjct: 190 DFAGDDRTVDVHIKRLRRRFADRAEDFVIQTVRGVGYKLEV 230


>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A ++          G  +    S E       + R D+  ++  L   G    
Sbjct: 4   LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRQIRRTEQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         V          G   PL   E +++  L  + G+ +++ Q+   ++  
Sbjct: 122 ETSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRLD 222


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +      E    +  + R D+  ++           
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R + ++P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223


>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
 gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +      E  + L  +   D+  ++  L G  G  +
Sbjct: 5   ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGITL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       VP+I ++   +    ++  ++G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  ARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLRRRA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        ++          G+   +   E R+L + M +  +  ++ Q+   ++
Sbjct: 125 PQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRAQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LRK L      + +++ R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPGKLENHIETVRGAGYRF 225


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G++                 R  V  ++  L         
Sbjct: 35  LVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVML--PDTDGFT 92

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R      P++ ++   S    +   + G DD V KP   RE+           + 
Sbjct: 93  LCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPREL--VARIKALLRRT 150

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R + GPI +   G +    G+   L   E ++L  L A  G+   + ++   ++G  
Sbjct: 151 EGRRQQIGPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWGE- 209

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   +   V+ H+  LR+KL  N    + + + R  GY ++
Sbjct: 210 EAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLN 250


>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE  PL  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTTGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223


>gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 254

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
            ++++D   +++        +G  +           L ++   D V  I   L+  G   
Sbjct: 27  LLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGLGG 86

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVA 113
           L+L R +R  ++  P++ IS   S    +   + G DD + KP            L R +
Sbjct: 87  LDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 146

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      + +F         G    L  +E +ILE  + N  +  ++ Q+
Sbjct: 147 SQSETSPSQPHSFTHANLCLFPSECRVTRDGTDLTLSPKEYKILELFIQNPKRVWSRDQL 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 207 LEKIWGV-DFIGDTKTVDVHIRWLREKVEQEPSSPQLIRTVRGFGYRF 253


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRALRQKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121

Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + A         +R+  +     V G    LP +E  +LE  + N G+ + + Q+   
Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGYKFE 226


>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 232

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    +      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVML--PKFDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAKK 122

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +      +V         +D R   +  +   L  +E  +LE L+ N  K  ++ ++ 
Sbjct: 123 SKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREELL 182

Query: 175 SAIYGLFDEAVEE-NVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G    A  +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 183 RFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYF 230


>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G +++            +    D+  ++      G   LE
Sbjct: 9   LVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVM--MPGLNGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  SQVP++ ++     +  +     G DD V KP   +E+  RVA++ RR ++ 
Sbjct: 67  VCRRLRQTSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRARMP 126

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                T  +           R   + G   PL  RE  +L + +++ G   ++  +   +
Sbjct: 127 RPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+  +      V +   +GY  D
Sbjct: 187 WGWD--FGDQSTVTVHVRRLREKIERDPAKPVRVATVWGVGYRYD 229


>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
 gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +E          +    + D+  ++  L   G    
Sbjct: 4   ILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIML--PGLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R + +VP++ ++        L     G DD + KP +  E++ARV +   R + 
Sbjct: 62  AVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +            +  D     +  +  P  RRE  +L +L  +     ++  +F
Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G  +   +   V  HI+++R+K+         +++ R  GY  
Sbjct: 182 ERVWGA-EALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227


>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 232


>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
 gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
          Length = 238

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R     P++ ++        +  F+ G DD + KP   RE           A+  
Sbjct: 66  VCRELREFKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQN 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEGMNGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G      N  E         + D+  ++  L        
Sbjct: 5   ILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIML--PKVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            + R +R     P+I I+        +   + G DD + KP   RE++ARV A       
Sbjct: 63  TVCRKLRQTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +    N  + G + +  D  + +   +V  L  RE  ++++L   +G+  ++  +  
Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G ++   +   V+  + +LR+K+  +      + +KR +GY  +
Sbjct: 183 KVWG-YEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGYYFN 228


>gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++     +      +    D+  ++  L   G   +
Sbjct: 5   ILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWML--PGTSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R IR       +P+I +S        +   + G DD + KP   RE+++R+ A    
Sbjct: 63  ELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       +   G + +    +    +     L   E ++LE+ + N  +  ++ Q+ + 
Sbjct: 123 RAPDRLEQQLVHGELTLDVISQRVHTKSGEISLGPIEFKLLEFFLRNPNRVFSREQLLNR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +E+  V+ HI +LRK L        +++ R  GY +
Sbjct: 183 VWGSTVY-IEDRTVDVHILRLRKSLNKAELPPMIETVRGSGYRL 225


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 4/224 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +          +G  +      E    L +  + DV  ++  L    G +V 
Sbjct: 6   LIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLSGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
              R       +P++ ++        +   ++G DD ++KP    E+LARV A     + 
Sbjct: 66  RQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALLRRAQP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +          G    L   E R+L++LM N G   ++ ++ +A++G
Sbjct: 126 TSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELLNAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  VE   V+ HI +LRK L  +   D + + R  GY++D N
Sbjct: 186 -PDIYVEPRTVDVHIRRLRKALNGEASTDLIRTVRAAGYALDTN 228


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRALRQRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + R        P+R+  +     V G   PLP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGYKFE 225


>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G         E    +      D+  ++  L        
Sbjct: 5   ILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVML--PKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N +        +++       E   +   L  RE  +L++L+ N+G   ++  +   +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225


>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 236

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         +    +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G + +  +     + +    + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIML--PHVDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ + IR   + P+I ++        +   + G DD + KP   +E    +  V   Y  
Sbjct: 66  DVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +  +      +G+   +P +E  ++ YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ H+ +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQGGPNWQ-IETVWGVGYKFEV 227


>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTTGEQAVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio cholerae LMA3894-4]
          Length = 229

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225


>gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +          +G  +      E           D   ++      G    +
Sbjct: 6   LIVDDDAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVM--MPGRSGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L R IR  S +P++ +S Y S +  L  F  G DD + K     E++ARV       ++ 
Sbjct: 64  LCRHIRETSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRRCQKE 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K S++    G + +     +  ++G+  P   RE  +L +   +  +   + Q+F   +G
Sbjct: 124 KPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFERFWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              E  +   V  HI ++R+K+  +      + + R  GY  +
Sbjct: 184 ---EIGDRQTVTVHIRRIREKIERDPADPHYIITVRGTGYRFE 223


>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  ++            ++ R D+  ++  L   G   LE
Sbjct: 5   LIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLML--PGLNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP++ ++   +    +   + G DD V KP   RE+  RV ++ RR    
Sbjct: 63  VCRRLRETGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRRAAGP 122

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + GP  V    R+   +     L  RE  +L YL+ +  +  ++ ++  A+
Sbjct: 123 PTSTAGGVIDVGPFTVDLPAREVRGENGTISLTVREFDLLAYLVRHPRRAFSRPELMEAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      +++ V  HI +LR+KL  +      + +   +GY  +
Sbjct: 183 WGW--SYGDQSTVTVHIRRLREKLEADPSSPSILVTVWGVGYRYE 225


>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
 gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
          Length = 223

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 238

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVML--PKLDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122

Query: 121 VSNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +  E                 +  +     E+  L  +E  +L YL+  +G+ + + 
Sbjct: 123 QVQSVKEDENDNEDVIIGSIKIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            + ++++  ++   +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 183 HMLNSVW-NYEFTGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G +G +++G         L      D   ++  L   G   L
Sbjct: 3   ILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVML--PGMNGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +   +R +    P++ ++         +  D+G DD V KP  +  ++AR+ A + R  
Sbjct: 61  RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +RV    R  E  G   PL  RE  +L YL A RG+ VAKT+I   ++G
Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + NVVE ++S LR+K+    G   + + R  GY ++
Sbjct: 181 --DFEGDVNVVEVYVSALRRKIDTPFGRRTIHTVRGAGYRLE 220


>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 247

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 69  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 129 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 189 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 239


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +   ++         S   D+  ++  L   G   +
Sbjct: 5   ILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVML--PGMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IRAH S   ++ ++   S++  +   D G +D + KP    E+LAR+ A  R   
Sbjct: 63  ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQG 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 E            +    R+    G    L  RE  +L YL+ N+ + + + QI
Sbjct: 123 KPLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +A++G +D   + NVV+ +I  +RKK+ +    + + + R +GY +  N
Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDHGGTQELIHTVRGVGYVLKEN 231


>gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G +              +    D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R+IR +S VP++ ++        +   ++G DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRLIRQNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +   G       EV  L   E  +L  L +  G+   + ++   ++G 
Sbjct: 123 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + A +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 183 RN-ASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++        +G  +    + E    +      DV  ++  L       +E
Sbjct: 9   LVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWML--PNLSGIE 66

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I        VP+I +S        +   ++G DD V KP   RE++ARV A  RR 
Sbjct: 67  VCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRA 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALGIYGGGDPLRTVRGAGYAL 228


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++      E           D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++              +R+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TSTSGIPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233


>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 231

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD              +G ++   +  +    L  S R D+  ++           
Sbjct: 7   ILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVM--MPKVDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA S VP++ ++        +  F  G DD V KP    E++ RV AI RR+  
Sbjct: 65  AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +    R   V      L  RE  +L  + ++ G    +  + + ++ 
Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             D   +++ V   I +LR+K+ +       + +   +GY  D
Sbjct: 184 HGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFD 226


>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
           Clip81459]
 gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J2-064]
 gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J1-175]
 gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
           1816]
 gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
           220]
 gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
           str. Scott A]
          Length = 238

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R     P++ ++        +  F+ G DD + KP   RE           A+ +
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLARSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G+ ++     E    +      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVML--PKRDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTRR 122

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +      R          +D R   +      L  +E  +LE L+ N  K  ++ ++ 
Sbjct: 123 SRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREELL 182

Query: 175 SAIYGLFDEAVEE-NVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G       +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 183 GYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F S           + D++ ++           
Sbjct: 5   ILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVM--MPVMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  KLCQKIREKYNFPVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLRRFTR 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            +     +  +  +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 123 YNEGIQQSNDILEVSSLIMNKTTHECSLNEQPLILTPTEFSILWILCENRGQVISSERLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G    +   N V  HI  LR+K++        + +   +GY I+ 
Sbjct: 183 QEVWGEKYFSGSNNTVMVHIRHLREKMKEPEGNPKFIKTVWGVGYKIEK 231


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D   ++     +    +      D+  ++  L       +E
Sbjct: 6   LVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVML--PEMDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKK 123

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   +     +         D R    + +   L  +E  ILE L  N  K  ++ Q+ S
Sbjct: 124 SKSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLLS 183

Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G    EA +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 184 IVWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYF 230


>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 246

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G S+   ++       L    +E V  I   L+  G   
Sbjct: 18  LLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLGG 77

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV------- 112
           L++ R +R ++   P++ IS   S    +   + G DD + KP   RE++AR        
Sbjct: 78  LDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALLRRT 137

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               ++ +  +N      + ++ +       G+   L  +E +ILE  M +  +  ++ Q
Sbjct: 138 QQKPQQDEQRSNVLSHDNLCLYPEECRVTRDGQELTLSPKEYKILELFMQHPKRVWSRDQ 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 198 LLEKVWGI-DFVGDTKTVDVHIRWLREKIESEPSSPKHIRTVRGFGYRF 245


>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
 gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +++         G  +    + E    L  +A  D+  ++  L G  G  V
Sbjct: 5   ILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGASGIDV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +  R       +P+I ++     Q  +   ++G DD + KP   RE+    +     R 
Sbjct: 65  AKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++  +   +R+          G V  L   E R+L + M +  +  ++ Q+   ++
Sbjct: 125 PQMTDDAVDVQGLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRSALEGTQHDGLIQTVRGTGYRF 225


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G  +    +      L      D+  ++  L   G    
Sbjct: 3   ILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLML--PGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R IR  S  P+I ++    L+  L   + G DD + KP   RE++AR          
Sbjct: 61  EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTHI 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++++      + + +   +  +Q EV  L   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + G  D   +E V+++HI KLR+KL         + +   +GY  +
Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLERVPSDPKIILTVYGVGYKFN 225


>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++     E    L +    ++  ++          +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLM--MPKIDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R ++ +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +        V  +   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    + E           D+  ++  L        
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S                + G + V ++ R     G+   L   E  +LE L    GK V 
Sbjct: 124 SISVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 230


>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
          Length = 235

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              + + D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EIVKEIRKTSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +    + D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 244

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 66  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 126 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 186 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 236


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     +  +        D+  ++  +   G   +
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMV--PGLSGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R IRA  +    P+I ++        +    +G DD V KP    E+LARV A    
Sbjct: 64  ELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ++    G I +         QG    L   E ++LEYLM + G+  ++ Q+   
Sbjct: 124 AKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D 
Sbjct: 184 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDE 228


>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G  +           + +S R D+  ++      G    
Sbjct: 14  LLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVM--MPGLDGF 71

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++   + +  +     G DD V KP    E+LAR+ A+ RR  
Sbjct: 72  GVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRRST 131

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                AE+  +         +  +    GEV  L   E ++L YLMAN G+ ++K QI  
Sbjct: 132 GPQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKAQILD 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES+IS LR+K+ +      + + R +GY++
Sbjct: 192 HVW-NYDFNGDANVVESYISYLRRKV-DTTEPRLLHTIRGVGYTL 234


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +  E     +  D+  ++  L   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWML--PGLSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA     ++P++ ++        +    +G DD V KP    E++ARV A    
Sbjct: 63  ELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +  +     G I +  + +     G    L   E R+LE+LM + G+  ++ Q+   
Sbjct: 123 AKPEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ H+ +LRK L      DP+ + R  GYS + 
Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKALNRPRQPDPIRTVRGSGYSFNE 227


>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 219

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  ++     E       S   D+  ++           
Sbjct: 4   ILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIM--MPKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R IR  SQVP+I ++        L  FD   D+ + KP + + ++A+V A       
Sbjct: 62  SVCRKIREESQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGK 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + +    R+  ++  V  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 122 IIDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V++HI +LRKK+ +K     V + R  GY  + 
Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGDK----YVQTVRGFGYKFEE 219


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++          +
Sbjct: 35  ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLM--MPKVDGI 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 93  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 152

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +          G+   L  +E  +L++  +N  +   KTQ+
Sbjct: 153 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 212

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 213 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 259


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      E         R D   ++  L       +E
Sbjct: 29  LVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLML--PKLDGIE 86

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + + +R      P++ ++        +   + G DD + KP   RE             +
Sbjct: 87  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTVI 146

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                + + S++    G + +F D  +     +   L  +E  +L YL   +G+ + + Q
Sbjct: 147 HGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTRDQ 206

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 207 LLSAVW-NYDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLEE 256


>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226


>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +           +      D+  ++           
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVM--MPRLDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++    +   +   + G DD + KP   +E+ +RV  I RR+  
Sbjct: 73  GVCRAIRKTSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGS 132

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L +  G  V++ ++ 
Sbjct: 133 LKPFNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELL 192

Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  +   V+  VV+ H+S+LR KL+   +G + + + R +GY++
Sbjct: 193 EKVWGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTL 240


>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 244

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDI--QMPRMDGL 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   A               +    R+         L R E  +LE  MA+  + + + 
Sbjct: 131 YAAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G      ++           + D+  ++  L       +
Sbjct: 5   ILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIML--PEMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++ + IRA  S+ P+I ++    ++  +   D G +D V KP    E    +       +
Sbjct: 63  DVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQ 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G + +    R+    G+   L  RE  +L YLM +  + + + QI   +
Sbjct: 123 NASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   + NVV+ +I  +R+KL        + + R +GY +  N
Sbjct: 183 WG-FDYYGDTNVVDVYIRYVRQKLEIANATPIIQTVRGVGYVLKEN 227


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   N  +    L  S + ++  ++  L   G+   
Sbjct: 5   ILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIML--PGKDGN 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR +V
Sbjct: 63  EVLREVRKTQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   +T          V  D      +GE   L  RE  +L YL  + G+ + +  +  
Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G +D   +   V+  + +LR+K+         + ++R +GY +
Sbjct: 183 TVWG-YDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYL 227


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++      E         R D+  ++  L   G   L
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWML--PGISGL 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   +    P++ +S       T+   D+G DD + KP     + ARV A+ RR
Sbjct: 64  EVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  ++       + +       E  G +  L   E R+LE+ M N GK  ++ ++    +
Sbjct: 124 LPPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 184 -ERSSFVELRTVDVHIRRLRQTLNEGDEQDLIRTVRARGYALD 225


>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 253

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+   +      G  +      E    +  +   D+  ++  L        
Sbjct: 13  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVML--PKLDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR++ I RR+  
Sbjct: 71  AVCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGR 130

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            N   E+  +               ++ R      E   L   E  +LE L  + G  V 
Sbjct: 131 GNAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVP 190

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 191 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus CNRZ1066]
          Length = 235

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +              + + D+  ++  L       L
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR + 
Sbjct: 62  EIVKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 218

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E         +  +  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ R IRA S  P+I +S    +   +   + G DD + KP                   
Sbjct: 65  QVCREIRAKSGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYHS 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L       E   + V          G+   +P +E  +L +L ++  +   + 
Sbjct: 125 SNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+ +   F  + +   +GY  + 
Sbjct: 185 QLLDNIWG-YEYIGDTRTVDVHIKRLREKIHDN-QFWSISTVWGIGYKFEV 233


>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
 gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
          Length = 238

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R     P++ ++        +  F+ G DD + KP   RE           A+ +
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  +
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G  +      +      S A  D+  ++  L   G    E
Sbjct: 5   LIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLML--PGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR +  
Sbjct: 63  VCKNIRLKSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRRGRHD 122

Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++                    +     V G+   +P +E  +LEYL+ NRG+ + + Q+
Sbjct: 123 DSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMPLKEFDLLEYLLRNRGRVLTRGQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G  D   +   ++ HI +LR K+  N    + + + R LGY  +
Sbjct: 183 IDRVWG-SDYVGDTKTLDVHIKRLRSKIERNPSSPEFLVTVRGLGYKFE 230


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   ++         +G  +  F++ E      S    D+  ++  L   G   
Sbjct: 5   VIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIML--PGIDG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++       +P+I ++        +   + G DD + KP   RE++ARV A++R
Sbjct: 63  LEVCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFR 122

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R+  +          G I +  + R+      +  +P +E  +L+ L+ N+GK +++  +
Sbjct: 123 RVNTATEPKIDVLSHGEITIDCNRREVYKGSRLLEMPLKEFELLKMLVLNKGKVLSREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI-DWN 223
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY   D N
Sbjct: 183 LDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDENPTYIETVRGIGYRFTDKN 233


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLML--PKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   AE             +  D        E   L  RE  +L YL  + G+ + +  +
Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYL 228


>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
 gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +      +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 ANTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEV 233


>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 218

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
 gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
          Length = 230

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +    L      D+  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSVEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAEGHDRLVQTVRGAGYRF 225


>gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
 gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
          Length = 229

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225


>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKLSIKTIRGLGYRLEV 226


>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G   +   +      +  S   D+  ++  L        
Sbjct: 4   ILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVML--PELDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR   + P+I ++    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 62  DVCKEIRKQHRTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRRNTQ 121

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            +  D      +G +  LP +E  +L +L ++  +   + Q+  
Sbjct: 122 PIEEVAPKNRIVLDNLIIDKDNYSVTYEGALVELPPKELEVLYFLASHPKQVFTREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G +D   +   V+ HI +LR K      +  + +   +GY  +
Sbjct: 182 KIWG-YDFVGDTRTVDVHIKRLRDKFEGDHTWS-IKTVWGVGYKFE 225


>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 218

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE  PL  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 223

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++     E    L +     +  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFFV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++ ++N G+   KTQ+
Sbjct: 124 LGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
 gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
          Length = 257

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 91/252 (36%), Gaps = 36/252 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L G +G  +    +      L      D+  ++  + G      
Sbjct: 6   ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP--NGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S  P++ +S           F SG DD + KP  + E+++R  A+ RR +V
Sbjct: 64  QTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRYQV 123

Query: 122 S---------------------------------NNRAETGPIRVFSDGRDPEVQGEVFP 148
                                             +       + +    R+    G++  
Sbjct: 124 YKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQLLD 183

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGF 207
           L   E  +LE L+ANR +  +  ++F +++         N V  HI  LR K+ +     
Sbjct: 184 LTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHPGNP 243

Query: 208 DPVDSKRFLGYS 219
           + + +    GY 
Sbjct: 244 ELIKTVWGKGYR 255


>gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
 gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
          Length = 229

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G                     ++  ++  +  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   ++G DD + KP   +E+ AR+ A+ RR+ 
Sbjct: 65  IKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++         + +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225


>gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 224

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G      +              D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLML--PGMSGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP+I ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 63  DVCRTVRETSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRQED 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +         +   G      G+   L   E  +L  L +   +  ++ ++   ++G 
Sbjct: 123 SPSETLEVGDLTIDVPGHAVFRDGKEISLTPLEFDLLHALASRPKQVFSRDELLEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YQHTSDTRLVNVHVQRLRSKIELDPENPQIVLTVRGVGYK 221


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F  +G  ++                 D+  ++  L   G    
Sbjct: 5   ILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIML--PGMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ + IR +S +P+I ++    ++  +   D G DD V KP    E+ ARV A    R  
Sbjct: 63  EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +  +   I +     +   QG    L ++E  +LE+LM N    +++ +I  +++G
Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+ +I  LR K+ +      + + R +GYS+
Sbjct: 183 -YDYYGDTNVVDVYIRYLRSKIDDPFDRKLIHTIRGVGYSL 222


>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
 gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
          Length = 232

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  F + +       S + +++ ++  L        
Sbjct: 5   ILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            + + IR     P+I ++        +     G DD + KP            ++     
Sbjct: 63  TICQKIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +  +  +  +   L   E  IL  L +NRG+ ++  ++
Sbjct: 123 YNSGEPNQEEQLIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVISSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LR+KL +       + +   +GY I+
Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKLHDSAEHPKYIKTVWGIGYKIE 231


>gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 242

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
            ++++D   +++    +   +G  ++          L ++   D V  I   L+  G   
Sbjct: 15  LLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGG 74

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVA 113
           L+L R +R  +   P++ IS   S    +   + G DD + KP            L R +
Sbjct: 75  LDLCRELRRINNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      + +F         G    L  +E +ILE  + N  +  ++ Q+
Sbjct: 135 SQSETSAPQPHSFTHANLCLFPSECRVTRDGMDLTLSPKEYKILELFIQNPKRVWSRDQL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 195 LEKIWGV-DFIGDTKTVDVHIRWLREKVEQEPSSPQLILTVRGFGYRF 241


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +E  ++             D+  ++  L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQL--PGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S  P+I ++   S    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQLRARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 T       R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225


>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
 gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG                  +  D+  ++  L   G   +
Sbjct: 5   ILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLML--PGIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ ++I A S VP++ ++        +   +SG DD V KP    E++ARV A  R  + 
Sbjct: 63  KVCKLISAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRPNET 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +   G       +V  L   E  +L  +     +  ++ Q+  A++G 
Sbjct: 123 HAAETLQVGEVTIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQLLEAVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +      + + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGYK 221


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G++     S +       S R D+  ++  L   G   + 
Sbjct: 2   LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLML--PGMDGMS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   D+G DD + KP  + E++AR+ A  RR    
Sbjct: 60  VCRQIRATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQL 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I +   G     +GE   L   E  +L  L+A   +   +  +   ++G + 
Sbjct: 120 GEPLVFGDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWG-YH 178

Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
              +  +V  H+++LR K+ +       + + R +GY 
Sbjct: 179 HPGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGYQ 216


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++        +G  +    + E    +      DV  ++  L       +E
Sbjct: 9   LVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWML--PNLSGIE 66

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I        VP+I +S        +   ++G DD V KP   RE++ARV A  RR 
Sbjct: 67  VCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRA 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALGVHGGGDPLRTVRGAGYAL 228


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 13  ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 71  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 130

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 131 LNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 191 FQHVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 238


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         R+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMML--PGIDRM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +   + G DD V KP   +E    +  V   Y  
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL N      +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEEWQLETVWGVGYKFEV 227


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +      D+  ++           
Sbjct: 9   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVM--MPKLDGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 67  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S++         + G +R+ ++ R    + E   L   E  +LE L++  G+  ++ +I 
Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 234


>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
 gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
 gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
           J1-023]
          Length = 238

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R +   P++ ++        +  F+ G DD + KP   RE           A+ +
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEAAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
 gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 235

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L +  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQML--PEIDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+ S+ P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  +E   +                      G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G S            +      D+  ++  +   G   L
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMI--PGLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110
           E+   IR         ++ ++        +    +G DD + KP   RE        +  
Sbjct: 61  EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +    +              +  +  +    Q E   L   E  +L   ++N G+   +
Sbjct: 121 SLRQGGQNQVSRTQHFIVDVDQRTASRQIDAHQAEALDLTTLEFNLLSTFVSNPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           TQ+   ++G  +   +E VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231


>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 226

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G ++      E         + D++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVK-DIALIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ R IR +S+VP+I ++     +  L  FD GVD+ + KP   + +            +
Sbjct: 65  QVCREIRQYSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSNV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G I +     +  + G+   L  +E  +L Y M+N+G  +++ +I + ++ 
Sbjct: 125 LAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL  K   + + +   +GY  + N
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGAKG--EYIKTIWGMGYKFEVN 225


>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 232

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +     +      +  + + D+  ++       +   
Sbjct: 4   ILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAA 114
           E+ + IR +     +P+I +S        +   + G DD + KP   +E++AR       
Sbjct: 62  EVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           I         +   G I V    R  + + +   L  +E  +L+ L+ NRG+ + +  I 
Sbjct: 122 IENLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  
Sbjct: 182 QRVWG-YEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRF 227


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G ++    S             D+  ++  L   G    
Sbjct: 5   ILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + + IR  S +P+I +S    ++  +   D G DD + KP    E++AR+     + +K
Sbjct: 63  SVLKEIRKKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     I +     +    G+   L ++E  +L+YL+ N    + +  I   ++G 
Sbjct: 123 ANTKKISYDGITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
           ++   E N+V+ +I  LR K+        + + R +GYS+  + N
Sbjct: 182 YNYIGETNIVDVYIRYLRSKIDEPFSNKLIQTIRGVGYSLRKEKN 226


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D++ ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +  +  +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRNTFEVNAGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223


>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L A  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
 gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
 gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       S + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 I +        V      +P +E  +L +L A+  +   + Q
Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G +D   +   V+ HI +LR K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YDYMGDTRTVDVHIKRLRAKIKDHPTWSL-GTVWGIGYKFEV 232


>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
 gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V       F  +G      +  +      +  R D+  ++  L       +
Sbjct: 3   ILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPI--MDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S+VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR + 
Sbjct: 61  TLCRKIRELSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRFQA 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  A                   +  L  +E  +L YL+ +  +   + Q+ 
Sbjct: 121 ETGSADEPHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPKQVFTREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +++G +    +E  V+ HI +LRKK+  +     + +   +GY  D 
Sbjct: 181 DSVWG-YQFYGDERTVDVHIKRLRKKIGTE-EQPFIHTVWGVGYKFDE 226


>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
 gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
          Length = 224

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   +++   A   D G ++              + + D+  ++  L       
Sbjct: 4   MILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLML--PKIDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             +  I+R  S+VP+I ++      + +  FD+  DD + KP     ++  + A+ RR +
Sbjct: 62  FAVCEILRKESRVPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVLRRAE 121

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       I V +D     V      L  RE  IL+ L+ N+G+ V++ ++   
Sbjct: 122 QGGAAPNTVIRYKEITVDTDSLTVLVGTGSVSLTTREFEILKLLLENQGRVVSRERLLDT 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   +E +V +HI  +RKKL    G D +++ R  GY I+ 
Sbjct: 182 VWG-YDYIGDEKIVNTHIKNIRKKL----GVDYIETMRGAGYKIEK 222


>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 248

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +           +  D+  ++           
Sbjct: 11  ILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 DPVVGIPNSGVIQVGELRIDTNKRQVYRGEERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    +             D+  ++  L   G   +
Sbjct: 4   ILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLML--PGLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R +R  S VP+I ++   S    +   + G DD V KP   R     + A +  +  
Sbjct: 62  DVCRALRQRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGYKFE 225


>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 218

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       S   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
 gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232


>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A +++   +   ++G ++    +     ++    + D+  ++  +   G   L
Sbjct: 5   ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG--GL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           +  R     ++ P+I ++        +   + G DD + KP + RE++ARV        +
Sbjct: 63  DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +    G I +        V  +   L   E  IL  LMA+ G   ++  +     
Sbjct: 123 AQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTS 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G       E  ++ HI  LR K+  +      +++   +GY  
Sbjct: 183 GQA-YEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224


>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +    + D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 250

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54
            ++++D  L+++  +     +G  +                      +  D+  ++  L 
Sbjct: 21  ILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EIL 109
                 L++ R++    + VP++ +S   S    +   + G DD + KP   R       
Sbjct: 80  -PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A +              +   I +        V+G+   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L A  G+  ++ Q+   I+G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 223


>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  +DG +              S A   ++ I+           
Sbjct: 4   IMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLM--MPNMDGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R  +  +P++ ++        +  F++G DD + KP    E+L RV A+ RR +
Sbjct: 62  ELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++           +     + G    +P +E  +L  L    G+   + Q+   ++G
Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ HI +LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLGYRLEV 223


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 100/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +      E    L      D+  ++  L    +   
Sbjct: 4   ILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIML--PKKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+ +S VP++ +S     +  L  F+ G D+ + KP +++ +LAR+  + +    
Sbjct: 62  SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKNTSN 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G I +        V+G+   L  +E  +L YL+ N    +++ ++ + ++G 
Sbjct: 122 NTDHIIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    +  +++HI  LRKKL +    + + + R +GY  +
Sbjct: 181 YDFPGSDRTIDTHIKNLRKKLGD----ECIKTVRGIGYKFE 217


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D        +G  +              S R D+  ++  L       +
Sbjct: 8   ILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLML--PKLPGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R +R  S+VP+I ++        +     G DD ++KP   RE+      + R A  
Sbjct: 66  EVCRALRIESEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRAVR 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    +   G + +    R   ++G    L  RE  +LE+L+ + G+  ++ ++  
Sbjct: 126 TEAAERPGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++       +++ V  H+ +LR+K+ +       + +   +GY  +
Sbjct: 186 RVWDWT--FGDQSTVTVHVRRLREKIEDAPAQPKRLVTVWGVGYRFE 230


>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G S+    S             D+  ++  L   G    
Sbjct: 5   ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLML--PGLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S  P+I +S    ++  +   D G DD + KP    E++AR+  + R+   
Sbjct: 63  SVLRELRKKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAK 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           SN        I +     + +  G    L ++E  +L+YL+ N    + +  I   ++G 
Sbjct: 123 SNANKLVYDGITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
           ++   E N+V+ +I  LR K+        + + R +GYS+  + N
Sbjct: 182 YNYIGETNIVDVYIRYLRSKIDEPFDNKLIQTIRGVGYSLRKEKN 226


>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++       + G  +   ++             D+  ++      G   L
Sbjct: 4   ILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVM--MPGMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R  RA +  P++ ++   +    +   + G DD + KP    E+    R        
Sbjct: 62  EFLRKYRADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRAGE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +      G + + +  R   V+G+   L R E  +++  M +  +   + ++   +  
Sbjct: 122 KPTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHL-- 179

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             D    E  ++ H+  +R K+         +++   +GY ++
Sbjct: 180 QEDSVGSERTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRLN 222


>gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G ++    +      L S    D+  ++  L   G   L
Sbjct: 13  LLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLML--PGINGL 70

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L R +R  S  PLI  +S   +    +   + G DD + KP   RE       +    R
Sbjct: 71  DLCRQLRQGSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLRRQR 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +  E   ++++         G    L  +E ++LE  M N  +  ++ Q+   +
Sbjct: 131 TPLPTTSSLEHLDLQLYPGECRVTRAGIEIRLSPKEYKLLELFMQNPRRVWSREQLIEQV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G+ D   +   V+ HI  LR+K+ +       + + R  GY  
Sbjct: 191 WGV-DYIGDSKTVDVHIRWLREKIEDDPSTPAKLVTVRGFGYRF 233


>gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
 gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          A   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQAPPAIILLDLML--PGSDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG    L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLLIDESRFQASYQGHFLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232


>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
 gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIML--PKHDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP++ ++        +   + G DD + KP +        + + R  +  
Sbjct: 64  VCQQIREFSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSKR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + ++     G +++  + R   +  +   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 DKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYF 227


>gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
 gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
          Length = 229

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225


>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 241

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EMSSKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 SKPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + N
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVN 234


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E            +  R D   ++  L   G   L
Sbjct: 18  ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVML--PGIDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R I+A    P++ ++        L     G DD + KP   RE              
Sbjct: 76  EVTRRIQADHPTPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVER 135

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A        ++     G + +    R     GE   L   E  +L  L ++    + + +
Sbjct: 136 AQQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRER 195

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D +     V+SHI  LR+KL    G D + +   +GY+ +
Sbjct: 196 LLAEVWDWADASG-TRTVDSHIKALRRKL----GPDLIRTVHGVGYAFE 239


>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 244

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S           +   IR+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 126 SGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +  G  + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGYLF 233


>gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 229

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDI--QMPRMDGL 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 121 VSNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +                  +R+    R+    G    L R E  +LE  + +  + + +
Sbjct: 131 YAAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQVLTR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +   N  +    L      D+  ++          L
Sbjct: 5   ILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIM--MPDLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + +R  + +P++ ++   S+   +   ++G DD + KP    E++ARV         
Sbjct: 63  EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  + +     + V    R              E  +L + M +  + + +  +   ++
Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E NV+E ++  LR KL  +     + + R  GY +
Sbjct: 183 G-FDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223


>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 250

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54
            ++++D  L+++       ++G  +              S          D+  ++  L 
Sbjct: 21  ILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++    + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++                   E +     +   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +      +  + L  +   D+  ++  L G  G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        ++           +   +   E R+L + M +  +  +++Q+   ++
Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
 gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +              + + D++ I   ++       
Sbjct: 16  ILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEK-DIALIILDVMMPKMDGW 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           +  R IR  S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV A      +
Sbjct: 75  QTCREIRQSSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRRSNV 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E G I V       +V G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 135 LDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSREKILNNVW- 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL  K   + + +   +GY  + N
Sbjct: 194 NYDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEVN 235


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +      E    +      ++  ++           
Sbjct: 8   ILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + + +R  S +P+I ++    +   +   + G DD V KP   +E        +     
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    + G +++  + R     GE   L   E  +LE L++  G+  ++ QI
Sbjct: 126 PTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQI 185

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G   +  ++  VV+ HIS+LR KL       D + + R +GY  
Sbjct: 186 LQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGYLF 234


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E           D+  ++  L       L
Sbjct: 53  ILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLML--PKMDGL 110

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 111 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   AE             +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 231 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 277


>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +      +  + L  +   D+  ++  L G  G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        ++           +   +   E R+L + M +  +  +++Q+   ++
Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGDVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226


>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
 gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 218

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223


>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           +    + D+  ++  L        
Sbjct: 10  ILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIML--PKMDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           E+   +++   VP + +S        +  F+ G DD + KP            + R  A 
Sbjct: 68  EVLAQLQSTGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTAG 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   +   I +    R   V+G+   L  +E  +L  L ++ G   ++  +  
Sbjct: 128 AGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSREALLQ 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   + + +E  +   + +LR+K+  +    + + +   +GY  D
Sbjct: 188 RVW-HSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGYKFD 233


>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              +      E    L    + DV  ++  L       +E
Sbjct: 5   LVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLML--PKMDGVE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111
           + + +R    + P+I I+   S   T+   + G DD + KP                   
Sbjct: 63  VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +R + G + +  D    +   +   L  +E  +L +     GK  ++ 
Sbjct: 123 EEPTDTVPSQQGHRLQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVWSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+   ++G FD + +  +V+ H+S LR+K+  +      + + R  GY+ + 
Sbjct: 183 QLLEGVWG-FDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTFEV 233


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVML--PHMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + IR  S++P+I ++        +   + G DD + KP   +E++AR+      Y  
Sbjct: 66  DVLKWIRRDSEIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNT 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  +  +   + +  +      + +   +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ESVDRDILKFKGLTIDINSYIVIYKDKEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGDQDWQ-IETVWGVGYKFEV 227


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 129 ESVAGIPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L G +G  +E  ++             D+  ++  L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQL--PGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S VP+I ++   +    +   + G DD V KP   R     + A +     
Sbjct: 62  EVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++  N  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFE 225


>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 220

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++    L    G  +    +      L  SA  D+  ++           
Sbjct: 4   ILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIM--MPYLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           E+ + +R  SQ P+I ++        +  FD G+DD + KP      +    A I R   
Sbjct: 62  EVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     I +F    +  + G    L  +E +IL  L+ N G+ + + Q+   ++G 
Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   +   +++HI  LRKK+        + + + +GY ++
Sbjct: 181 FDAFGDTRFLDTHIKNLRKKI----NVPYIQTVKGVGYKLE 217


>gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVISGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226


>gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 229

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D + +++    +    G         +      S    D+  ++  L  G G ++
Sbjct: 5   ILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGSGIQL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +  R      Q+P+I ++     +  +   + G DD + KP   +E+    +       
Sbjct: 65  AKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRRSA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   +R+        V+ +   +   E R+L + M +  +  ++ Q+   ++
Sbjct: 125 PTRLEEAVEVQGLRLDPVSHRVTVEEQGLDMGPTEFRLLHFFMTHPERVYSREQLLDNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK ++       + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIQETGHDKLIQTVRGAGYRF 225


>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     +  +        D+  ++  +   G   +
Sbjct: 11  ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMV--PGLSGI 68

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R IRA  +    P+I ++        +    +G DD V KP    E+LARV A    
Sbjct: 69  ELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRR 128

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ++    G I +         QG    L   E ++LEYLM + G+  ++ Q+   
Sbjct: 129 AKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D 
Sbjct: 189 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDE 233


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
 gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +      +  + L  +   D+  ++  L G  G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        ++           +   +   E R+L + M +  +  +++Q+   ++
Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 232


>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 243

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +               I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVIAIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 218

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        +  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G  +      E    L ++ + D+  ++          L
Sbjct: 6   ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIM--MPKLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E  + I+    VP+I +S    +   +  F  GVDD   KP        R       +  
Sbjct: 64  EASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKA 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K   +  +     +    R   + G+   L  +E  +L  + ++  +  ++ Q+   
Sbjct: 124 VPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+       +E+ V  HI +LR+K+  +    + + +   +GY  +
Sbjct: 184 IW-ESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFE 228


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G                     D+  ++  L   G   L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLML--PGLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D G              L +    D+  ++  L        
Sbjct: 5   ILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPA--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA SQ P++ ++   +    ++  + G DD + KP   RE+++RV AI RR+  
Sbjct: 63  EVCRRIRAWSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122

Query: 122 SNNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           S                      + V    R  EVQG    L   E  +L  +  +  + 
Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  + + ++G +D   + + ++ HIS LRKK+        + +   +GY  +
Sbjct: 183 FTREILMNKVWG-YDYLGDGHTIDVHISALRKKIEAGEQQRYIKTVWRVGYRFE 235


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  +    L  + + D+  ++  L   G   +
Sbjct: 4   ILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLML--PGMDGI 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+     P++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTE 121

Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                AE               +F +  +     ++  L  +E  +L +L  N+GK  ++
Sbjct: 122 SRKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            Q+  A++  +D   E  +V+ H+S LR+K+         + + R  GY ++
Sbjct: 182 DQLLDAVW-NYDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKME 232


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 5   ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR ++
Sbjct: 63  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 183 LIDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 231


>gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 227

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G +    +               +  ++  L   G   +
Sbjct: 7   IYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLML--PGIDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  + VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  TLCKEVRKFTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N +++      S        + +GE   L  +E  +  +L  +  K   + Q+   ++
Sbjct: 125 EENDSDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V+ HI +LR+K+ +   +    +   +GY  + 
Sbjct: 185 G-YEYMGDSRTVDVHIKRLREKIGDGPNWKL-TTVWGVGYKFEV 226


>gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +   +      E    L      D+  ++  L       +
Sbjct: 5   ILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLML--PKFSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P++ IS   S          G DD ++KPI   E+ ARV A  RR   
Sbjct: 63  DILKKVREKSLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      +               +V+ ++  L  +E  IL+  M N+ +   K QI
Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  I+   D    ENV+  HI +LR+K+  +      + +   +GY +
Sbjct: 183 YQFIW-QDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKL 229


>gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231]
 gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G +              +    D+  ++  L   G   +
Sbjct: 12  ILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLML--PGMNGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R+IR +S VP++ ++        +   ++G DD + KP   +E++AR+ A  RR   
Sbjct: 70  DICRLIRQNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 129

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +   G       EV  L   E  +L  L +  G+   + ++   ++G 
Sbjct: 130 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 189

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + A +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 190 RN-ASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 228


>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
 gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
          Length = 233

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E           ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E        +     
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +       +   + +          G+   +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDHANWSL-ATVWGIGYKFEV 231


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE              
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     +   N    GP+ +  D    + +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 218

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 223


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G              +    + ++  ++  +   G    
Sbjct: 6   ILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMI--PGMDGF 63

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           ++ + I   +      +I ++        +   + G DD + KP   R     + A +  
Sbjct: 64  DVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E+  ++V  +  + ++QG    L  +E  +L+ L+ N+GK + +  + 
Sbjct: 124 TASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D  ++    +G      ++              +  ++          L
Sbjct: 8   ILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVM--MPELDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
                IR  S VP+I ++        +     G DD + KP   R     I A +   + 
Sbjct: 66  TACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K      + G + +  +GR   V+G+   L R+E  +L   + N  K  ++ Q+   I
Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  +       V++HI  LR KL    G   + +   +GY  + N
Sbjct: 186 WGT-EYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEAN 228


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   +  E           D++ ++           
Sbjct: 5   ILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIM--MPKMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R   + P++ +S        +     G DD + KP    EI+ARV A  RR   
Sbjct: 63  QLIKKVRETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRRSYE 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N        N+   G + +           +   L   E ++L   M + G+   K QI
Sbjct: 123 FNKNTLESTVNQIHIGNLILDHHSCMLYKYNKSITLSAIEYKLLTLFMEDPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F  ++       ++N +  HIS+LR+KL +       + + R LGY  
Sbjct: 183 FERVWSDH-YYSDDNAIMVHISRLREKLEDSPRNPVYIKTIRGLGYRF 229


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + +    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGYKF 230


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F   G   E  +  +       S   D+  ++  L   G    
Sbjct: 4   ILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQL--PGMSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    VP++ +S        +  F  G DD V KP    E++AR  A   R + 
Sbjct: 62  EICKTIRERLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYER 121

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  +  P          +        V  +   L  +E  +L ++  N  +  +K Q+
Sbjct: 122 FKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSKDQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+GL D   +   V  HIS++R+KL  +      +++    GY  
Sbjct: 182 FEKIWGL-DSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGYRF 228


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     + +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   +
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEA 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +         P+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   ++
Sbjct: 123 EDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           G  D   +   ++ H+ +LR KL  +      + + R LGY  + 
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGYKFEV 226


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +      D+  ++  L        
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVML--PKMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------L 109
            + R IRA S VP+I ++   ++   +   D G DD + KP   +E+             
Sbjct: 62  AVCRRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGP 121

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A      R +       + G + V ++ R     GE   L   E  +LE L  + G+ V 
Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL       + + + R +GY
Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGATGIPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
 gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A     G  +   +  E        A  D+  ++  L   G   +
Sbjct: 5   ILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWML--PGMTGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           E  R +R      ++P+I ++     Q  +   +SG DD + KP   RE+          
Sbjct: 63  EFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  + + +  E G +R+               L   E R+L + M +  +  ++ Q+   
Sbjct: 123 RAPQTTEDAVEAGDLRLDPVTHRVGCGDRPVALGPTEFRLLHFFMTHPERVHSRAQLLDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ H+ +LR  L        + + R  GY  
Sbjct: 183 VWGDH-VFVEDRTVDVHVRRLRAALEPSGHDQLIQTVRGSGYRF 225


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 ASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234


>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
 gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   +++   A     G  +      E  + L   A  D+  ++  L    G   
Sbjct: 5   ILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMSGIDF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R      ++P+I ++     Q  +   ++G DD + KP   RE++AR+ A+ RR  
Sbjct: 65  ARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRRRA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        R+               L   E R+L +LM +  +  ++ Q+   ++
Sbjct: 125 PQATEDAVELGGLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRCALEPSAHDALIQTVRGSGYRF 225


>gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 17  ILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWM--FPGGSGI 74

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R       +P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 75  QLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRR 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 135 AAPTALEEPIDVQGLVLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 195 VWGT-NVYVEDRTVDVHIRRLRKAVEPSNHDRLIQTVRGAGYRF 237


>gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612]
 gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D      G++G ++  F S +           +++ ++           
Sbjct: 5   ILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVM--MPELDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
            L R +R     P+I ++        +     G DD V KP          +  L R   
Sbjct: 63  TLCRRLREKYTFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLRRSQR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +   A    + +  +     +  +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 123 YNGGQQEAGAIAAYRGLTLNRETHVCTLDEKPVELTPIEFSILWTLCKNRGRVISSEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G        N V  HI  LR+K+++       + +   +GY I
Sbjct: 183 KEVWGEKYFTGN-NTVMVHIRHLREKMQDSAENPRYIKTVWGVGYKI 228


>gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A +++        +G   +     E      +  R D+  ++  L G  G  +
Sbjct: 7   ILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPGISGVDL 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +   +  ++P+I ++     +  +   + G DD + KP    E++AR+ A+ RR  
Sbjct: 67  ARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVLRRSA 126

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    E   +++  D     V G    +   E R+L + + +  +  ++ Q+   ++
Sbjct: 127 PLLSGEVIEVNGLKLDPDSHRLSVGGAPLEMGPTEFRLLHFFLTHLERVYSRGQLIDYVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        + + R +GY  
Sbjct: 187 GN-NVYVEERTVDVHIRRLRKSLEPSGHDGLIQTVRGVGYRF 227


>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 218

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++      G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +R +   P++ ++        +  F+ G DD + KP   RE           A+ +
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEATGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  +
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F +         +   D++ ++  L        
Sbjct: 5   ILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVML--PDMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           EL + IR   Q P+I ++        +     G DD + KP    E+        R    
Sbjct: 63  ELCQKIREKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYKH 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y     +++      + + +   +  + G+   L   E  IL  L   +G+ V+  ++F 
Sbjct: 123 YNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELFH 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LRKK+ +       + +    GY I+ 
Sbjct: 183 EIWGDEYFSKSNNTITVHIRHLRKKMDDSFENPKYIKTVWGCGYKIEK 230


>gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++        D G ++      +    +  +   DV  ++           
Sbjct: 5   ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIM--MPEMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
           ++ + +R  S VP+I +S        +   + G DD + KP +        +  I     
Sbjct: 63  QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKG 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               + K          + +  +       GE   L   E RI+   M + G+   K QI
Sbjct: 123 MAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   D    EN V   +S+LR KL +  G + + + R LGY ++ 
Sbjct: 183 YECGWDE-DYVAAENSVMVCMSRLRSKLGDD-GQEAIKTIRGLGYRLEK 229


>gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
 gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   ++   S E           D+  ++     +G   
Sbjct: 6   ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVM--MEGMSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E    IR ++  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 64  FEACTEIRNYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTY 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +              P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 124 KREEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +    + N V  HI KLR+K+  +      + + R LGY  
Sbjct: 184 KVWG-YPSYGDNNTVMVHIRKLREKIEKDPSNPSYIVTVRGLGYRF 228


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +  E    +      D+  ++           
Sbjct: 9   ILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVM--MPKLDGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 67  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S +         + G IR+ ++ R    + E   L   E  +LE L++  G+  ++++I 
Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 234


>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   + V          G+   +P +E  +L +L ++  +   + 
Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+ +   F  + +   +GY  + 
Sbjct: 185 QLLDNIWG-YEYIGDTRTVDVHIKRLREKIHDN-QFWSISTVWGIGYKFEV 233


>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G  +    +      L  +   D+  ++  L   G   +
Sbjct: 3   ILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVML--PGLDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R++R  S VP+I +S        +   ++G DD V KP  +  +LARV    RR + 
Sbjct: 61  SVCRLLREESDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQEN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   + +     + +   E   L   E  +L  L     +  ++ ++   ++G +
Sbjct: 121 ESEILKVADLSIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             + +  +V  HI +LR K+  +      V + R +GY 
Sbjct: 180 RHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGYR 218


>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 243

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     +    +G  +    +           + D+  ++          +
Sbjct: 5   ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWM--MPEMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQ+P+I ++        L  F+ GVDD V KP   RE+ AR+  I +RL+ 
Sbjct: 63  EVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E              R+  ++G+   L   E ++LE  + N GK  ++ ++    
Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       E  +++HIS LRKK+  +    + + +   +GY +
Sbjct: 183 IGEA-YEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 12/226 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           + DD   ++D        +   ++     E    L       +  ++          +E+
Sbjct: 8   IADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVM--MPKIDGIEV 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
            R +R H+ VP++ ++        +     G DD + KP    E+LAR+ A+ RR     
Sbjct: 66  CRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVLG 125

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  +   + +          G+   L  +E  +L++  +N G+   KTQ+F 
Sbjct: 126 SESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLFR 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +       ++N V  HI +LRKK+  +      + +   +GY  
Sbjct: 186 NAWS-DQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230


>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU144]
 gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU045]
 gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +      +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 ANTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEV 233


>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +    + D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G + V    R  +   +  PL  +E  +L+ L+ NRG+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 243

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        +  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233


>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
 gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
          Length = 244

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLML--PEMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 66  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 126 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 186 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 236


>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E+L RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    +L    G  +E            ++   D   + A ++      L 
Sbjct: 8   LVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPD--LLVADVVMPVMDGLG 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R++RA    VP++ ++    +   +   D+G DD ++KP    E+LAR+ A+ RR   
Sbjct: 66  LCRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRTTH 125

Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                          +       G    L   E  IL  L  N  + +++ QI  A++G 
Sbjct: 126 LPASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N +E +IS LR+KL  +     + + R +GY +
Sbjct: 185 YAMTPASNSLEVYISYLRRKLEAEGEPRIIQTVRGVGYRL 224


>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
 gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R      ++P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSSEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSEHDHLIQTVRGAGYRF 225


>gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G+ ++   S E    L +    D+  ++  L        
Sbjct: 4   LLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGL--PDIDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RAH    P++ ++        +   + G DD V KP   RE++AR  A+ RR  
Sbjct: 62  EVLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELVARARALLRRAT 121

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +            P+++    R    Q  +  L  RE  +L +L  + G+  ++  +   
Sbjct: 122 LRTRPAEPSVPPSPLQIDQPRRRATFQNHMLDLRPREFDLLAFLARHPGQVFSRDTLLRQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G  D  ++E  V+ H+ +LR KL       D + ++  +GY  
Sbjct: 182 VWGQ-DGFLDERTVDVHVRRLRAKLAEVDPEADLIQTEWGIGYRF 225


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E    + S+   D+  ++  L     + L
Sbjct: 4   ILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLML--PKIEGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 62  EVCREIRKTSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S    +              +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY I
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229


>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 220

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E    +      D+  ++  L    +   
Sbjct: 4   ILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIML--PKKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + R I+ +S VP+I I+   +    +  F+ G DD + KP  ++      +     +  
Sbjct: 62  SICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              NN  E G +++               L  +E  IL Y + N+   +++ ++ + I+G
Sbjct: 122 ININNEIEIGNLKINDISHSVRKGEGDLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    + +V+ HI  LRKK+ +    + + + R +GY  +
Sbjct: 182 -YDYTGNDRIVDVHIKNLRKKIGD----EYIKTIRSVGYKFE 218


>gi|225020670|ref|ZP_03709862.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679950|ref|ZP_07402760.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946616|gb|EEG27825.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660570|gb|EFM50067.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G +    N       +      D+  ++  L   G   ++
Sbjct: 10  LVVDDDPAISEMLTLVLSTEGFASVVVNDGGQAVEVFQRENPDLVLLDLML--PGMNGID 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   S
Sbjct: 68  ICRAIRQESTVPIVMLTAKTDTVDVVLGLESGADDYIPKPFKPKELVARVRARLRRSDES 127

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +       +   G      GE   L   E  +L  L +  G+   + ++   ++G  
Sbjct: 128 STDSMEVGDLLIDVPGHSVSRDGEEISLTPLEFDLLHELASKPGQVFTREELLQRVWGYR 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           + A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 188 N-ASDTRLVNVHVQRLRAKIEKDPEKPQIVLTVRGVGYK 225


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE              
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     +   N    GP+ +  D    + +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A ++    A     G  +   +S      L      D+  ++  L   G   +
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNL--PGMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           E+   +R  S V ++ ++        +     G DD V KP   RE++ARV         
Sbjct: 63  EVAARLRQDSDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRRS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      +++  D R+  V  +   L   E  +L  L    G+ +++ QI   +
Sbjct: 123 TTPAVNSTLRFAHMQIDPDRREVTVGDQTIDLTTTEFDVLLALARRHGRVLSREQILDLV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D    + VV+ ++ ++R+KL    G   + + R +GY  
Sbjct: 183 WGN-DFYGTDRVVDVYVGQVRRKLEAVAGVSLIQTVRGVGYKF 224


>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A V++G        G ++    + E           D+  ++  L   G    E
Sbjct: 5   LVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLML--PGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
             R IRA  QVP+I ++        +   ++G DD V KPI  R + AR+          
Sbjct: 63  TCRRIRALGQVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRRTAAE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +   G      GE  PL   E ++L  +    G+  +++Q+ ++++G
Sbjct: 123 PGAAGPEQHGDLVIDRAGMLVHKHGEQVPLTPTELKLLLEISRTPGQVHSRSQLLASVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             D   +  +V++ + +LR K+ +     D V + R  GY  
Sbjct: 183 -HDYLGDSRLVDACVQRLRAKIEDVPARPDHVQTVRGFGYRF 223


>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 218

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G         +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 218

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE+  L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G   ++   +      L      D+  ++  L    +  
Sbjct: 7   ILLVDDEEAILQMLQTVLKKEGFVQIDTCTTAAEAIRLVEEKTYDLLILDVML--PDKSG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            EL   +R  ++ P+  ++   +    L  F  G DD + KP H        +   R   
Sbjct: 65  FELCGAVRQRTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     R + G  +V  +  +  V GE    P +   +L +      +   K QI+
Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++       +EN V  HI KLR+++    G    + + R LGY +
Sbjct: 185 DHVWKDEYGMFDENTVMVHIHKLRQRIEENPGQPKLLVTVRGLGYKL 231


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +       +    + D+  ++  L    +  +
Sbjct: 5   ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML--PNKDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +  ++ 
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229


>gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
 gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  +E   +      +          ++       +  + 
Sbjct: 8   LVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLM--MPEKDGVA 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           +   +R     P+I ++        ++ F++G DD + KP   RE           +   
Sbjct: 66  VATELRETKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSAAY 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +       S +      + +  D       G    L  +E  +L +L     K   +  +
Sbjct: 126 SPISNSTASKDLVVFPHLTIDHDAHRVTADGVEVNLTPKEYELLYFLAKAPDKVFDREHL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSESAAKMIVTVWGVGYKFEV 235


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         R+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  +E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLML--PEIDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A     
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+   + +  +   I
Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 243

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   +  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N             +++ ++ R      E   L   E  +LE L+   G+  ++++I 
Sbjct: 126 GSNPGIPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 218

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       S   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  G+   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
 gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
          Length = 232

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E    L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWML--PGTSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       VP+I ++   + Q  ++  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  TLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                          ++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDIIDVGGLKLDPVTHRLSGHEQALSIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 224

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLML--PGMSGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD + KP   RE++AR+ A  R+   
Sbjct: 63  DICKEIRKESNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNSE 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +        +V          G+   L   E  +L  L     +   + ++  +++G 
Sbjct: 123 EPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWGY 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + A +  +V  H+ +LR K+  +    + + + R +GY 
Sbjct: 183 RN-ASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGYK 221


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223


>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 232

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++           
Sbjct: 6   ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N              + +  + R   V GE   L  +E  IL  L ++  K  +   IF
Sbjct: 124 LNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 QQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 231


>gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 236

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNL--PDTTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + ++  ++V ++ ++        +  F+ G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ALCQEMQDRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +            +    R+  +      L   E  +L  L    G+   ++++   +
Sbjct: 124 VEDTEMRSLTYGDLVIDPVRREVYISDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  ++   E+ VV+ HI ++RKK+         + + R +GY  D
Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D    ++        DG  +    + E    L   A  D+  ++  L    G +V 
Sbjct: 9   LLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
              +       VP++ +S        +   ++G DD V KP    E++ARV A     R 
Sbjct: 69  RQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRSRP 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R E   I + ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 SAVGERLEYEDIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALCQHGGGDPLRTVRGAGYAL 228


>gi|319893322|ref|YP_004150197.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317163018|gb|ADV06561.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 225

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G       S E           D++ ++      G    E
Sbjct: 6   LIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEKHTIDIAIVDIM--MDGMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++   + P+I ++   +L      F +G DD V KP    E++ R+ A+ RR +++
Sbjct: 64  LCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIA 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +     + +V+ +   LP +E  +L  L+A   +   + Q+   I+G+ 
Sbjct: 124 TETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D   +E  V+ HI +LR +L+       +++ R +GY 
Sbjct: 183 DYEGDERTVDVHIKRLRARLKKLGANVYIETVRGIGYK 220


>gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
 gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
          Length = 229

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         + VS+      +    L    + D+  ++  L        
Sbjct: 6   ILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIML--PEYDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + + IR  S VP++ ++        L  FD GVDD + KP   +E++ARV A       
Sbjct: 64  TICKRIREKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSNR 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S        ++V   G    +QGE   L  +E  +L   + N+ + +++  I   ++G
Sbjct: 124 QLSTETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V++H+ +LR KL+       + + R LGY  + 
Sbjct: 184 -YDYYGDLRTVDTHVKRLRHKLKEMGEQ--IKTVRGLGYRFEV 223


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++          L S+   D+  ++  L   G   L
Sbjct: 4   ILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLML--PGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +RA S VP+I ++   +++  +   ++G DD + KP    E+    R     R+ 
Sbjct: 62  EVARRLRADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + + +  R+  V      L  +E  +LE  M +  + + +  I+  ++ 
Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E ++  LR+KL        + + R +GY +
Sbjct: 181 NYDFGGESNILEVYVRYLRQKLEANGEPRLIHTVRSVGYIL 221


>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 230

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++  ++      L S    D+  ++  +   G    
Sbjct: 7   ILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMI--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + ++A   V +I ++   +++  +   D G DD V KP    E++AR+ A  R+   
Sbjct: 65  EVCKRMKAQKDVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + +    R+ +   +   L ++E  +L+YL  N GK + +  I + ++G +
Sbjct: 125 DLEQIVVGDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
           D    ENVV+ +I  LR K+ +      + + R +GY   ID N
Sbjct: 184 DYYGSENVVDVYIRYLRAKIDDPFENKILHTVRGVGYALKIDSN 227


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 237

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E                 D+  ++          L
Sbjct: 7   ILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDI--QMPRMDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +      +R+    R+         L R E  +LE  +A+  + + + Q
Sbjct: 125 YASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 185 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYAL 231


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE            ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A        +     G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID 
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDV 231


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +           +  D+  ++           
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVM--MPKLDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 74  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 133

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 134 EQVAGIPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 193

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 194 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 241


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +           +    R D+  ++           
Sbjct: 8   ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S+VP+I ++    +   +   + G DD V KP   +E+ +RV +I RR++ 
Sbjct: 66  GVCQAVRKASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRMET 125

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                   V ++ R          L   E  +LE L  + G+ +++++
Sbjct: 126 TKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISRSE 185

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               ++G   EA V+  VV+ HIS LR+KL +       + +   +GY++
Sbjct: 186 FLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTL 235


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 227

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G  +E  +  +    + +  R DV  ++   +  G   LE
Sbjct: 4   LVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDV--LMPGLDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
             R +RA     P++ ++   ++   +   D+G DD + KP    E    L  +      
Sbjct: 62  TCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSAP 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++ +     + +    R+         L R E  +LE  M +  + + ++QI   ++
Sbjct: 122 GPGASQQLRFSDLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N +E ++  LR+KL  +     + + R +GY++
Sbjct: 182 G-YDFPTTANSLEVYVGYLRRKLEAQGEPRLIHTIRGVGYAL 222


>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL    G + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGE--GGNYIQTVWGVGYKFEV 223


>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
 gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
          Length = 236

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G ++E     +  E      + D+  ++  L   G   +E
Sbjct: 10  LIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWML--PGLSGIE 67

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +RA       P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 68  LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 127

Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        +    +        +   L   E R+LE+LM   G+  ++ Q+   +
Sbjct: 128 SPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLDGV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 188 WG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 230


>gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
 gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
          Length = 229

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 228

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   + +        +G +                ++ D+  ++  L    G +V
Sbjct: 5   ILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGMLGTEV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S++P++ ++        +  F+ G DD + KP   RE+  R+ AI RR  
Sbjct: 65  CKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAILRRCD 124

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V           G I +  +            L   E ++L YL+  RG+ +++ Q+   
Sbjct: 125 VEQPTGSPLLTLGDIVIDRERHRVVSADAETDLTSTEFKLLLYLVERRGRVISRDQLLQD 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   D   +   V++HI++LR KL        + + R  GY I+ N
Sbjct: 185 VWSYHD-VGDTRTVDTHITRLRGKLGAPGEQ--IKTVRGFGYKIEEN 228


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +      E           D+  ++  L    +  L
Sbjct: 4   ILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLML--PKKTGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE        +     
Sbjct: 62  EVCREIRKDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G + V  +      +G+   L  RE  +L YL  + G+ + +  +
Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
              ++G +D   +   V+  I +LR+K+ +       + ++R +GY
Sbjct: 182 LETVWG-YDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGY 226


>gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +   +S E    +    + ++  ++  +    G +V
Sbjct: 6   ILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDGVEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
             + R      +  +  ++      + +   D G DD + KPI  R  ++R       + 
Sbjct: 66  CRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRRSD 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   +  + G + +  D    +   EV  L ++E  +L  L++  GK  ++ +IF+
Sbjct: 126 RLPQEEGLDVIKIGGLSIDRDRVSVQKGEEVIELAKKEFELLFLLVSKPGKVFSREEIFN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  D  V    ++ HI KLR+K+ +    D + + + +GY  ++
Sbjct: 186 KVWGT-DVIVGNRTIDVHIRKLREKIGD----DYIKTIKGIGYKFEF 227


>gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 227

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +      E       + R D++ ++           
Sbjct: 4   ILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIM--MPRMDGW 61

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L   +R      +PL+ ++        +  F+ G DD + KP    E++ RV A+ +R 
Sbjct: 62  ALCEALRDSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLKRY 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K+  +          S         E    LP +E  +L  + +   K  A+ Q+   ++
Sbjct: 122 KIVASHTVEVGCISLSKTDYDVTMPEGRVKLPPKEFELLFKMASYPNKTFAREQLIEQLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +E  V+ H+ +LR++   +     + + R LGY ++ 
Sbjct: 182 GV-DYEGDERTVDVHVKRLRERFPEQTSGFRIVTIRGLGYRLEV 224


>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 230

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        DG  +E     E        +  D+  ++           
Sbjct: 5   ILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVM--MPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P+I ++        +   + G DD V KP   RE+ ARV AI RR   
Sbjct: 63  TVLRELRKTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +           +     + + +G+V  L  RE  +L+YL ++ G+  ++ ++ 
Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++  ++   +   V+  + +LR+K+ +    F  + +KR +GY  
Sbjct: 183 DQVWD-YEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGYYF 228


>gi|291299360|ref|YP_003510638.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568580|gb|ADD41545.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 229

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G +       E         R DV  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRTEGFTPVFVTDGEQALEAFHEHRPDVVLLDLML--PGMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR    
Sbjct: 64  VCKQIRLESGVPIVMLTAKSDTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRGDDV 123

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +        + G    L   E  +L  L     +   +  +   +
Sbjct: 124 APERLQIGRPGLQVSIDVPAHSATLNGVEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+  +      + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPENPQLIQTVRGVGYK 225


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGED 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 229

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++      +    +      D+  ++  L    +   
Sbjct: 5   ILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIML--PKQDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVCKKLREKITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    E   IR     +         +G+   L  RE  +++YL    G+   + ++   
Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +       + +KR +GY  
Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYF 226


>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 237

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    + +    L  + + D+  ++       +   
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL         + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE            ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A        +     G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID 
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDV 231


>gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
 gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116]
 gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
          Length = 229

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
          Length = 249

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +           G  +E  +  +      S  + D+  ++  L   G   +E
Sbjct: 25  LIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWML--PGLSGIE 82

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           + R IR        P+I ++     Q  +   ++G DD + KP + + + AR+ A     
Sbjct: 83  VCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRA 142

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        I +               L   E R++E+ + +  +  ++ ++  ++
Sbjct: 143 SPVTAKGMLTFHDITMDLATHRVHRNNRPIHLGPTEFRLMEFFLQHPRRVFSREELLDSV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK +  +   D V + R  GY++D
Sbjct: 203 WGT-DIHVEPRTVDVHIRRLRKAVNGEGEVDLVRTVRAAGYALD 245


>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 224

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G+ +           L    + D+  ++      G    E
Sbjct: 5   LVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIM--MPGMDGWE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  + +PL+ ++        +  F  G DD + KP     ++ARV A+ +R ++ 
Sbjct: 63  LCRKLREQTDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRYRIM 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++ T    V   D  + +   +   LPR+E  +L  L +  GK   +  +   I+G +
Sbjct: 123 ASKSVTIGDLVLRSDTFECQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 182 DYEGDERTVDVHIKRLRERFPEATQSFAIRTIRGLGYRLE 221


>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D++ ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++     E    L +     +  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   + D        +G S+           L    + D+   +      G    
Sbjct: 4   IAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREKPDIIISDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  +  P++ ++        +   + G DD ++KP   RE++ARV A+ RRL++
Sbjct: 62  ELTRTLRTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRRLEM 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +       P           + ++     V G+   L  RE  +L YLM NRG+  ++  
Sbjct: 122 TAGTEAGIPAGLTLRLGGLELDAERHRLTVGGQEVELSPREFDLLAYLMNNRGRVFSRQS 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +   ++G +D   +E  V+ H+  LR+K+  +      + + R +GY  + 
Sbjct: 182 LVDRVWG-YDYPGDERTVDVHVRWLRQKIETDPARPHHLVTVRGVGYKFEE 231


>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 243

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 254

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252


>gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrosococcus oceani ATCC 19707]
 gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
 gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A +++        +G   +     E      + +  D+  ++  L G  G  +
Sbjct: 5   ILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGISGVDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +   +  ++P+I ++     +  +   + G DD + KP    E++AR+ A      
Sbjct: 65  ARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRRSA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    E   +++        V+G    +   E R+L + + +  +  ++ Q+   ++
Sbjct: 125 PLASGEVIEFDGLKLDPGSHRLSVRGTPLEMGPTEFRLLHFFLTHLERVYSRGQLIDYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        + + R +GY  
Sbjct: 185 G-DNVYVEERTVDVHIRRLRKSLEPSGHDGFIQTVRGVGYRF 225


>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++           
Sbjct: 6   ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLA 123

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N              + +  + R   V GE   L  +E  IL  L ++  K  +   IF
Sbjct: 124 LNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 QQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 231


>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 241

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233


>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +    +      +    + D+  ++       +   
Sbjct: 5   ILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V      L  +E  +L  +  +  +  +++Q+
Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F+     N V   +S+LR KL         + +   +GY  + N
Sbjct: 183 LELIWD-FEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|56750974|ref|YP_171675.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81299367|ref|YP_399575.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56685933|dbj|BAD79155.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81168248|gb|ABB56588.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + V+   +      G  +E                 D+  ++  L        
Sbjct: 6   ILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNL--PDTNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           +L  I++  + V +I ++        L  F  G DD + KP     + AR+         
Sbjct: 64  QLCEIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S        +++    R+    G+   L   E  +L +L  +  +   + ++   +
Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  +D   ++ VV+ HI ++RKKL        P+ + R +GY  +
Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D    ++        +G  +    + +    L   A  DV  ++  L    G +V 
Sbjct: 10  LLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEVC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   +   VP+I +S        +   ++G DD V KP    E++ARV +  RR + 
Sbjct: 70  RQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARP 129

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+     E   IR+  +        ++  L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 130 SSVGLTLEFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 190 R-DIYVDSRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      +       +   D   ++  L       L
Sbjct: 5   ILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLML--PEMDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + +R +  + P++ ++        +   + G DD + KP   RE            +
Sbjct: 63  EVCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A    +      +   G + ++SD  +  ++G    L  +E  +L YL  ++G+ + + 
Sbjct: 123 AAKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 QLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEV 233


>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
 gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        +
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVML--PKYDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP++ ++        +   + G DD + KP +        + + R  +  
Sbjct: 64  VCQQIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSKR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V++       +++  + R   ++ +   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 DSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYF 227


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+             
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSHP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +         + G + +  +    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 122 IPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   + E    L +  + ++  ++          +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLM--MPKVDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V G+   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI--DWN 223
             ++   +   ++N V  HI KLRKK+  +      + +   +GY    + N
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGYKFVGEKN 235


>gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R    
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +      E G +++         + +   L  +E  IL+    N+ +   K QI++
Sbjct: 123 YSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIYN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKLEV 229


>gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
 gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEEAGHDKLIQTVRGAGYRF 225


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYLSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----SIDYIKTIRGVGYKIEK 221


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G  +             ++   D+  ++  L   G    E
Sbjct: 5   LIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLML--PGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------A 114
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+          
Sbjct: 63  VCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGET 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +              + +  +     V GE  P+P +E  +LEYLM N G+ + + Q+ 
Sbjct: 123 EHVEEADEGQILREDRVMMDVERHIVTVDGEPVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G+ D   +   ++ HI +LR K+         + + R LGY  +
Sbjct: 183 DRVWGV-DYVGDTKTLDVHIKRLRSKIERHPSRPQLLLTVRGLGYKFE 229


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +VS    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  +      +           D+  ++  L        
Sbjct: 8   ILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R +R  S VP+I ++    ++  +   + G DD + KP   RE++ARV       + 
Sbjct: 66  RVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHT 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    + G + +   G    V+ +   L   E ++L  L    G+   + ++   +
Sbjct: 126 ESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
 gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +    L      D+  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAEGHDRLVQTVRGAGYRF 225


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60
           +++DD A ++      F   G  +E  +              + D+  ++  L   G   
Sbjct: 5   LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    ++P+I ++        +   + G DD V KP   RE++AR  A+ RR 
Sbjct: 63  LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122

Query: 120 KVSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +     A+            I +     +  V+G++     +E  +L+Y M N    +++
Sbjct: 123 ESREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q+   ++G +  A +  +V+ H+S LR+K+ +       + + R +GY  
Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKF 232


>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 239

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       ++G  +E F   E    +    + D+  ++  L   G   
Sbjct: 8   LIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIML--PGVDG 65

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVA 113
            E+ + I+ +     +P+I ++        +   + G DD ++KP         +     
Sbjct: 66  FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S  R   G I +  + R+     ++  +  +E  +L+ L+ NRGK +++  +
Sbjct: 126 RQADSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDML 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 186 LQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRGIGYRF 232


>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 218

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL    G + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGE--GGNYIQTVWGVGYKFEV 218


>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
 gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   N+ E       +   D+  ++  +       L
Sbjct: 5   ILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMI--PKLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ ++IR  + +P+I +S   S          G DD + KP          + ++ R   
Sbjct: 63  EVLKVIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +    G +++          G+   L  +E  IL+  + NR +   K QI+
Sbjct: 123 YAGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+       +EN++  HI +LR+K+ +       + +   +GY  +
Sbjct: 183 QLIW-KDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGYKFE 229


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    + S    D+  ++           
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         R   
Sbjct: 70  GVCQELRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G +++ ++ R    +GE   L   E  +LE +++  G+  ++++I 
Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGYLF 237


>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 247

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +   D+  ++           
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVM--MPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 70  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 129

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 130 NGASGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       DG  +    S+       S  R D+  ++  L        
Sbjct: 4   LLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGL--PDGTGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  +  P++ ++        +   D G DD + KP   RE+L+RV A+ RR   
Sbjct: 62  DLCRQIRVENGTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   +G + + ++       GE   L   E R+L  LM N G+ + + Q+   ++  
Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             + V+EN +  +I +LR K+ +       + + R +GY 
Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYR 221


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++E     E    +   ++ D+  ++  L       L
Sbjct: 7   ILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLML--PKMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR  V
Sbjct: 65  EVCREIRKQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +  D       GE   L  RE  +L YL  + G+ + +  +
Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++  +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 185 LETVWD-YDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLL 231


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D    ++        +G  +    + +    L   A  DV  ++  L    G +V 
Sbjct: 10  LLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEVC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   +   VP+I +S        +   ++G DD V KP    E++ARV +  RR + 
Sbjct: 70  RQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARP 129

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+     E   IR+  +       G++  L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 130 SSVGLTLEFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 190 R-DIYVDSRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229


>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L  K    +
Sbjct: 5   ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHAT 122

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +      G               D      + E   L  RE  ++ YL  N G+ + +  
Sbjct: 123 APAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYL 230


>gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 239

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLML--PGSDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +        +   +   +       +    +  +  ++  L G  G +V
Sbjct: 6   ILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGISGMEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +  R     S++P+I ++        +   + G DD + KP   RE+    +       
Sbjct: 66  CKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRRTN 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +  +  G + +     +         L  +E  +L  L+ NRGK + +  +   I+
Sbjct: 126 TVAVSTNSRFGELTIDFSKYEVRKNDIKVDLTLKEFELLNILVKNRGKVLTRDVLLDKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G ++   E   V+ HI  LRKK+  +      +++ R +GY  
Sbjct: 186 G-YEYIGETRTVDVHIRHLRKKIEDDDSSPKYIETIRGIGYRF 227


>gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4]
 gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAIDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E            ++ R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R +R+     P++ ++   S+   +   D+G DD + KP         + A +    
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + +     + +    R+    G    L R E  +LE L+AN  + + +++I   
Sbjct: 123 SDDSGDSQKMTFSDLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E +I  LR+K   +     + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 225


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD ALV +       + G  ++          +  +   D+  ++  L   G   +E
Sbjct: 59  LVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLML--PGLDGIE 116

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RAH  VP+I ++        +   + G DD V KP   RE+  RV ++ RR   +
Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              A       G + V +  R     G    L  RE  +L +L+   G+   + ++   +
Sbjct: 177 VPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHV 236

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G      + + V  HI +LR+K+ +       + +   +GY  D
Sbjct: 237 WGW--SYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 279


>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A ++    A     G  +   ++      L    R D+  ++  L   G   +
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNL--PGMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           E+   +R  S V +I ++        +     G DD V KP   RE++AR+         
Sbjct: 63  EVAARLRQESDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRRS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V +       +R+  + R+  V  +   L   E  +L  L    G+ +++ QI   +
Sbjct: 123 ASPVIDATLRFAHLRIDPERREVYVGDQAIDLTTTEFDVLLALARRHGRVLSREQILDLV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +    + VV+ ++ ++R+KL    G   + + R +GY  
Sbjct: 183 WG-DNFYGTDRVVDVYVGQVRRKLEAVAGVPLIQTVRGVGYKF 224


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111
           E+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+             
Sbjct: 62  EVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +         + G + +  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 254

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252


>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G S++   +             D+  ++  L   G    
Sbjct: 4   ILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIML--PGMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    +P++ +S        +     G DD + KP    E++ARV A   + + 
Sbjct: 62  EILKKIRDEKDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N+     +         +  D R   V G+   L ++E  +L +L  N  +  ++ +I
Sbjct: 122 LRNKYGNNNVNSITIRGLEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G+ D   +   V  HI ++R+K+  +      +++    GY +
Sbjct: 182 FDRVWGM-DALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRL 228


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G         +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G  +             ++   D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ + +R  S VP+I ++   S    +   + G DD V KP   R               
Sbjct: 62  DVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQD 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++ +   +      E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 ASSEHAEEEPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQQLVTVRGLGYKFE 231


>gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    + +    L  + + D+  ++       +   
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL         + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 254

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 62  EVCREIRKTSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQL 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    E              +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 APAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY I
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229


>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 228

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54
            ++++D  L+++       ++G  +              S          D+  ++  L 
Sbjct: 21  ILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++    + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++SN                 E +     +   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 237

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    + +    L  + + D+  ++       +   
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSQ 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL         + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 228

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 10/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   ++D       ++G S+           L      D+  ++          
Sbjct: 3   VILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVM--MPRMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++    IR    VP+I +S        +     G DD V KP +  E++ARV A  RR K
Sbjct: 61  IKACMHIREQYSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQK 120

Query: 121 VSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++             +        ++G+V  L   E  IL+ L AN G+  +   I+
Sbjct: 121 MLTSKEGVHDQITIDELVIDVAKHFVSIRGQVVMLTPLEFAILKLLAANPGQVFSADTIY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +++        +N V  HI  LR+KL  N    + + +   +GY +D 
Sbjct: 181 ESVWKER-IGFSDNTVMVHIRNLREKLEINPRKPEYIKTVWGVGYKMDK 228


>gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 239

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLML--PGSDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCLELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232


>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 236

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       ++G  ++ F+S E       + + D+  ++  L   G   
Sbjct: 5   LIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIML--PGIDG 62

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R I+  S   ++P+I ++        +   + G +D + KP   RE++AR+  I+R
Sbjct: 63  LEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFR 122

Query: 118 RLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S            I +     +   + ++  +  +E  +L+ L+ N+G  +++  +
Sbjct: 123 RQADSVETNPEKIKVGKITIDVARHEVYKEKQLIEMTYKEFELLKLLILNKGIVLSRELL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY  
Sbjct: 183 LEKIWG-FDYYGETRTVDVHIRYLRQKIEDDDNSPVYIETVRGVGYRF 229


>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 218

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  G+   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +G  +      E      +    D+  ++  L       +
Sbjct: 5   ILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMML--PKISGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           +  + IR  S VP++ +S              G DD + KP    E        I    A
Sbjct: 63  DFLKKIREKSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTA 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       N       + +  D       G+   L  +E +IL+  M N  K   K  I
Sbjct: 123 YVIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           F++++   D   +ENV+  H+S+LR K+ +       + +   +GY +
Sbjct: 183 FTSVW-NDDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRL 229


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 3/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G  +      E         +  +  ++      G   LE
Sbjct: 6   LLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDI--AMPGLDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +     + +I ++    +   +     G DD V KP    E++AR+ A+ RR   S
Sbjct: 64  LCRRLHVLGDIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTGS 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +    R+    G++  L  RE  +L  LM +  + + + QI   ++G ++
Sbjct: 124 QEMLSYSDLELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWG-YN 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E NV+E H+  LR+KL    G   + + R +GY +
Sbjct: 183 ADLETNVLEVHMGHLRQKLEASGGSRVIQTIRGVGYVL 220


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  + L      D+  ++  L   G   +
Sbjct: 6   ILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWML--PGLSGI 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +R      ++P+I ++        +    +G DD + KP    E+ ARV A    
Sbjct: 64  ELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G + V  + +     G    L   E R+LE+LM   G+  ++ Q+ + 
Sbjct: 124 ALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLLNG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     ++E  V+ H+ +LRK L      DP+ + R  GY++D
Sbjct: 184 VWG-SQIYIDERTVDVHVGRLRKALNRGHETDPIRTVRGAGYALD 227


>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
 gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E   +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
 gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L  +   D+  ++  L         
Sbjct: 6   LVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVML--PKMDGFA 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP++ ++        +   + G DD + KP +        + + R     
Sbjct: 64  VCQQIRDFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGRK 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +N      +++  + R   +Q     L  +E  +LE L  N  K  ++ ++ + 
Sbjct: 124 EEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYF 227


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEGYYE-SGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    +    + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIML--PNRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREIRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +      +            D      +G+   L  RE  +L YL  + G+ + +  
Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++        DDG  +    S      L  +   DV  ++  L        
Sbjct: 21  ILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLML--PDIDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S VP+I ++        +   ++G DD V KP   +E+ AR+ A+ RR + 
Sbjct: 79  ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A             D       GE   L R E R+L  L +   +  ++ Q+   +
Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +G +D   +  +V+ H+ +LR K+        +  + R LGY I
Sbjct: 199 WG-YDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241


>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 234

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 232


>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 232

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEGYYE-SGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
 gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
          Length = 239

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 15  ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 72

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 73  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 133 SAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 235


>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 233

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +           G  +           L       +  ++  L    G  V
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMDGLDV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
               R     +++P+I ++        L   + G DD + KP   RE++ARV        
Sbjct: 65  TRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRSE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  + + G + +  + R     GE   L   E  +L  L +  G+   + Q+   +
Sbjct: 125 GSTSPGKQIQIGGLVIDLECRSVRRDGETIELTATEFDLLAVLASAPGRPFTRAQLLDRV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           Y   +    +  +++HI  LR+K+          + +   +GY  
Sbjct: 185 YNT-EYTGFDRTIDAHIKNLRRKIEPDSNGPPRLILTVYGVGYKF 228


>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 236

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLML--PGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRTTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E   + V         +G    +P +E  +L +L ++  +   +
Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+R+   +    +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIRDDENWAL-STVWGIGYKFEV 234


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 218

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++          L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S VP+I ++        ++    G DD + KP    E+             +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE+  L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218


>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
 gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++   A   D G ++                  D+  ++  L        
Sbjct: 5   ILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLML--PKMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  I+R  S+ P+I ++      + L  FD+  DD + KP     ++  +         
Sbjct: 63  TVCEILRKESRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRIEP 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +        + +D    +V G    L  RE  IL++L+ N+G+   +  +   I+
Sbjct: 123 AASEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDRIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +E ++ +HI  +RKKL    G D +++ R +GY I+ 
Sbjct: 183 D-YDYVGDEKIINTHIKNIRKKL----GVDYIETIRGVGYKIEK 221


>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 233

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG  +   +  E      +    D+  ++  L       L
Sbjct: 5   LLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQ P+I ++      T +   + G DD + KP +  E+ AR+ A+ RR + 
Sbjct: 63  EVCQTIRQTSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122

Query: 122 SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    I +     +       + GE   L  +E  +L  L +N GK  ++  +   
Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+G ++   +   V+ H+ +LR+K+ +       + +K  +GY  
Sbjct: 183 IWG-YEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYF 226


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        +  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|323463631|gb|ADX75784.1| heme response regulator HssR [Staphylococcus pseudintermedius ED99]
          Length = 225

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 91/218 (41%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G       S E           D++ ++      G    E
Sbjct: 6   LIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEKHTIDIAIVDVM--MDGMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++   + P+I ++   +L      F +G DD V KP    E++ R+ A+ RR ++ 
Sbjct: 64  LCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIV 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +     + +V+ +   LP +E  +L  L+A   +   + Q+   I+G+ 
Sbjct: 124 TETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D   +E  V+ HI +LR +L+       +++ R +GY 
Sbjct: 183 DYEGDERTVDVHIKRLRARLKKLGANVYIETVRGIGYK 220


>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 232

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +    +S      +    + D+  ++       +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIM--MSDKDGY 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR +      P+I +S        +   + G DD + KP   +E++ RV      
Sbjct: 62  EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        ++ + G I V    R  +   +   L  +E  +L+ L+ NRG+ + +  I 
Sbjct: 122 VESLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  + 
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +      D+  ++  L        
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVML--PKMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------L 109
            + R IRA S VP+I ++   ++   +   D G DD + KP   +E+             
Sbjct: 62  AVCRRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGP 121

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A      R +       + G + V ++ R     GE   L   E  +LE L  + G+ V 
Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL       + + + R +GY
Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR   
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L+   G+  ++++I 
Sbjct: 126 VGAAGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 236

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLML--PEMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IESAVAEENASAGSQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E       +   D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIML--PKYTGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + ++IR  S VP++ ++        +   + G DD + KP +        + + R     
Sbjct: 64  VCQMIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGKS 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + K   N      +++    R   V G+   L  +E  +LE L  N  K  ++ ++ + 
Sbjct: 124 VKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ H+ +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYF 227


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +       +    + D+  ++  L    +  +
Sbjct: 6   ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML--PNKDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +  ++ 
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60
           +++DD A ++      F   G  +E  +              + D+  ++  L   G   
Sbjct: 5   LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    ++P+I ++        +   + G DD V KP   RE++AR  A+ RR 
Sbjct: 63  LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122

Query: 120 KVSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   + A+            I +     +  V+G++     +E  +L+Y M N    +++
Sbjct: 123 ESREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q+   ++G +  A +  +V+ H+S LR+K+ +       + + R +GY  
Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKF 232


>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E    +      D+  ++  L    +   
Sbjct: 4   ILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIML--PKKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + R I+ +S VP+I I+   +    +  F+ G DD + KP  ++      +     + +
Sbjct: 62  SICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTI 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E G +++         +G+   L  +E  IL Y + N+   +++ ++ + I+G
Sbjct: 122 VNNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     +  ++ HI  LRKK+    G + + + R +GY  +
Sbjct: 182 -YGFVGNDRTIDVHIKNLRKKI----GGEYIKTIRSVGYKFE 218


>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
 gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
          Length = 233

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S+E     +  E     +  D+  ++  L   G   +E
Sbjct: 5   LIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWML--PGLSGIE 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +RA       P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 63  LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        +    +        +   L   E R+LE+LM + G+  ++ Q+   +
Sbjct: 123 SPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 225


>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 246

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A    +G  ++             + + D+  ++  L   G   L
Sbjct: 22  ILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVML--PGFDGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ 
Sbjct: 80  EVCRRVQARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 139

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   A T            +    R   V+G    L   E  +L  L  +    +++ Q+
Sbjct: 140 AALAANTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANSPRAVLSREQL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 LAEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+   +      G  +      E    +    + D+  ++  L         
Sbjct: 27  LIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVML--PKLDGFA 84

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 85  VCRRLRAESCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  AE   I             V ++ R     G    L   E  +LE L    G+ V +
Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +I   ++G     A +  VV+ ++++LR KL       + + + R  GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 238

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     +              +  ++  L   G   L
Sbjct: 10  IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVAAVHQQPPALILLDLML--PGSDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  +++P++ ++        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 68  SVCRELRRFTELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                +    + +         QG+V  L   E R+L+ L +  G   ++ Q+ + +Y  
Sbjct: 128 PAESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL         + S   +GY  +
Sbjct: 188 Y-RVVTDRTIDSHIKNLRRKLEALDGEKAFIRSVYGVGYRWE 228


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E      +    D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLML--PKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S   AE  P          +  D       GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYL 228


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 228

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +   NS        +++  D+  ++          LE
Sbjct: 6   LVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIM--MPDVDGLE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA     P++ ++   ++   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 64  VCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGAP 123

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +        ++       +  R+         L  +E  +L   +++  + + +  +   
Sbjct: 124 AQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLMEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D + E NV+E +++ LR KL        + + R +GY +
Sbjct: 184 VWG-YDYSGESNVLEVYVAYLRNKLEAGGEPRLIQTVRGVGYVL 226


>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
 gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
          Length = 254

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++      E    L +  R D++ ++       +  L
Sbjct: 3   ILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVM--MPKKDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           ++ R +R+H    P++ ++   S++  +   D+G DD + KP          R +  R A
Sbjct: 61  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   +        + +  + RD         L R E  +LE LM N  K +++  I
Sbjct: 121 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K         + + R +GY++
Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 226


>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 234

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  +           +      D+  ++  L   G   +
Sbjct: 5   ILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVML--PGLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
            +   IR     P++ +S        +    +G DD + KP +            R    
Sbjct: 63  SVCMKIRESKTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       ++  +   + +  +     V G    L   E  IL  L ++ G+    
Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            +IF  I+         N V  HIS+LR KL  +  G   + +   +GY ++
Sbjct: 183 EEIFELIWKDKYLD-SSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKLE 233


>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   +    +G  +    + +    + ++       ++  L        
Sbjct: 4   ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLML--PDLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S+VP++ ++        +     G DD + KP   RE++ARV A+ RR   
Sbjct: 62  EVCVQIRKESRVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGD 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++   +   +   + +   +      +   E R+L  L+   G+   + ++   + 
Sbjct: 122 YSTLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVM 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G FD    +  +++HI  LR+K+  +    + + +   LGY  D
Sbjct: 182 G-FDFEGYDRTIDTHIKNLRQKIEADPKQPEYIKTVYGLGYRFD 224


>gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens TA208]
 gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens LL3]
          Length = 239

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   ++   S E           D+  ++     +G   
Sbjct: 6   ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVM--MEGMSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E    IR ++  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R  
Sbjct: 64  FEACTEIRNYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTY 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +              P+        E      +  ++L+Y   +    ++K QI+ 
Sbjct: 124 KREEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +    + N V  HI KLR+K+  +      + + R LGY  
Sbjct: 184 KVWG-YPSYGDNNTVMVHIRKLREKIEKDPSDPSYIVTVRGLGYRF 228


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 272

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++           
Sbjct: 35  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVM--MPKLDGY 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 93  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 152

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 153 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 212

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 213 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 260


>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 254

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +             +  + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R + ++P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252


>gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 234

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +   ++G  +           L  S + D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVML--PGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR +V
Sbjct: 64  EVCRQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRV 123

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             +  + R+ E  G    L  RE  +L  L +  G+   + ++ 
Sbjct: 124 IRAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D A  + VV+ HI  LR+KL +   G   V + R +GY  
Sbjct: 184 QRVWG-PDFAGIDWVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKF 229


>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 237

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    +      L  + R D+  ++       +   
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VPIQAEESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL         + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 248

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +           L  +   D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +               RV ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EHVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205]
          Length = 234

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G S+    + +           ++  ++  L   G   L
Sbjct: 13  LLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVML--PGINGL 70

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L R +    Q P ++ +S   +    +   + G DD + KP   RE       +   ++
Sbjct: 71  DLCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +   + +F       + G    L  +E ++LE  M N  +  ++ Q+   +
Sbjct: 131 ASDQQPSELKADNLSLFPAECRVCLDGLELKLSPKEFKLLELFMQNPKRVWSREQLIEQV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G FD   +   V+ HI  LR+K+  +      + + R  GY  
Sbjct: 191 WG-FDYIGDNKTVDVHIRWLREKIEEDPSNPSKLVTVRGFGYRF 233


>gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 223

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+         DG  +              + R D   ++  +       L
Sbjct: 3   ILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEP--NGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEELRARLRALLRRSG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       +R+   G   E  G    L + E  +LE  + N    +++TQIF +++G 
Sbjct: 121 AQSEVLTFADVRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   + N +  +IS LR KL    G   + + R LGY +
Sbjct: 180 YDFGPQSNALWVYISYLRGKLEADGGARLIQTVRGLGYVL 219


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E            +  R D++ ++          L
Sbjct: 3   ILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVM--MPKLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R+     P++ ++   S+   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           +   + +  + R+         L R E  +LE LM+N  + +++T I 
Sbjct: 121 LEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRTAIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 EDVWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVM 225


>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 221

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  + +        +G  +      E           D+  ++  L   G    
Sbjct: 6   IMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIML--PGIDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R IR    H   P+I +S        +   + G DD + KP   RE+LAR+ A++RR
Sbjct: 64  EFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123

Query: 119 LKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++S    E  P +       +  D  + +++G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 MQLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRN 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKF 232


>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
 gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
          Length = 222

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F   G S+           +      D+  ++  +        
Sbjct: 3   ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMI--PCLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + + IR +S+VP+I ++     +  L  ++ G DD V KP   + ++A+V         
Sbjct: 61  TVCKSIRQNSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSGI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   N      + +     + ++ GE+  L  +E  +L + + N    +++  I   ++
Sbjct: 121 EEKETNIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD       V++H+ +LR+KL+ K     + + R  GY  + 
Sbjct: 181 G-FDYDGGLRTVDTHVKRLREKLKEKSN--YIVTVRGKGYKFEV 221


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +G  +    + E    L       +  ++  L        
Sbjct: 7   ILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLML--PRISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E+   IRA S VP+I ++     +  +     G DD + KP   RE++       R    
Sbjct: 65  EICNKIRAVSDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRRTYR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + V       +  GE   L   E ++L  L+ N G+  ++ Q+  
Sbjct: 125 DSSPLADYLLFNNGDLEVQIKKMKVKKAGEYVNLTANEFKVLLALLTNPGQVFSREQLVQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G  D    +  ++S+I  +R+K+ +       + +   +GY  
Sbjct: 185 KAFGE-DYEGFDRTIDSYIKNIRQKIEDNHKEPKYIITVYGIGYKF 229


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D    ++        +G  +    + +    L      DV  ++  L    G +V 
Sbjct: 10  LLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEVC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   +   VP+I +S        +   ++G DD V KP    E++ARV +  RR + 
Sbjct: 70  RQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARP 129

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+     E   IR+  +       G++  L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 130 SSVGLTLEFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 190 R-DIYVDSRTVDVHVGRLRKALCVHGGEDPVRTVRGAGYAL 229


>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++           
Sbjct: 6   ILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  I+         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 232


>gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612]
 gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612]
          Length = 233

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  + G +            R D+  ++  L   G+  L
Sbjct: 4   ILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLML--PGKDGL 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +RA    S +P+I ++        +   + G DD + KP   +E+ ARV A+ RR
Sbjct: 62  TICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLRR 121

Query: 119 LKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++  +           R+     +    G+   L  +E  +L YL  N+ K + + Q+ 
Sbjct: 122 TEMIKSSDTEEIAVGSLRILPGSFEVYKNGKKLSLTLKEYELLLYLANNKNKVLTRDQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             I+G ++   E   V+ HI  LRKK+ +      +++ R +GY +  N
Sbjct: 182 DEIWG-YEYYGETRTVDVHIRYLRKKIEDDQE-KYIETVRGVGYRLVEN 228


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++    A     G  +   +              D+  ++           
Sbjct: 11  ILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVM--MPRLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD + KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 DQTAGIPNSGVIQVGDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
 gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
          Length = 230

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +  R + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G S            +      D+  ++  +   G   L
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMI--PGLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110
           E+   IR         ++ ++        +    +G DD + KP   RE        +  
Sbjct: 61  EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +    +              +  +  +    Q E   L   E  +L   ++N G+   +
Sbjct: 121 SLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           TQ+   ++G  +   +E VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G  ++   + +    +      D+  ++      G    
Sbjct: 8   ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIM--MPGMNGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           EL R +R  +  P++ +S   S    +   + G DD + KP   RE++AR          
Sbjct: 66  ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++      G I +       E       L  RE  +L  LM   GK  ++  +   
Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +G ++   E   V++HI +LR KL         +++ R  GY  
Sbjct: 186 AWG-WEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229


>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +++G        G  +    + E    L +S R ++  ++  L   G   ++
Sbjct: 5   LLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLML--PGINGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++        +   ++G DD + KP     I ARV A+ RRL   
Sbjct: 63  VCRRIRESSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLSTP 122

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +   G     +GE  PL   E ++L +L A+     ++ Q+   ++
Sbjct: 123 AGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR K+ N       + + R  GY  
Sbjct: 183 D-HSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGYRF 224


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++      E    L      ++  ++  +        
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMI--PKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + + IR  S VP+I ++    +   +   + G DD V KP   +E        +     
Sbjct: 70  GVCQEIRKESDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRRVER 129

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +     ++     G + +  + R          L   E  +LE L++  G+  ++  I
Sbjct: 130 VHFNPGIPTSGVMTVGFLTIDMNKRQVYKSNNRIRLTGMEFNLLELLVSKSGQAFSRADI 189

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY  
Sbjct: 190 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 238


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
 gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
          Length = 238

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +   ++     E    L    + ++  ++          +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLM--MPKVDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V      L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKF 230


>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 224

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 4   ILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R +  +PL+ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 62  ELCYELRRYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  V  +V  LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 181 YDFEGNERTLDVHINRLREKFQKETASFAIKTIRGLGYRLEV 222


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G + +   + +  +        D+  ++  +       ++
Sbjct: 9   LIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMI--PYIDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + + IR   + P+I I+        +   + G DD + KP   +E    +  V   Y   
Sbjct: 67  ILKWIRKQKETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSSE 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   +   + + S         E   +P +E  +L YL  N+ K   + Q+   ++G
Sbjct: 127 NIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   V+ HI +LR+KL +      + +   +GY  + N
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKL-SSGEQWEIQTVWGVGYKFEVN 228


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  +   D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +   + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
 gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
          Length = 236

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +++   A     G  +   N  E  + +   A  D+  ++  L G  G + 
Sbjct: 5   ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGASGVEF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   RE++AR+ A+ RR  
Sbjct: 65  ARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRRRA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        R+               L   E R+L +LM +  +  ++ Q+   ++
Sbjct: 125 PQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRCALEPSAHDALIQTVRGSGYRF 225


>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 253

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54
            ++++D  L+++       ++G  +              S          D+  ++  L 
Sbjct: 24  ILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML- 82

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++    + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 83  -PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 141

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++                   E +     +   L  +E R+LE  M+   +  +
Sbjct: 142 ALLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWS 201

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 202 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 252


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   + E    L +  + ++  ++          +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLM--MPKVDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V G+   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230


>gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +++                 D+  I+  L   G   L
Sbjct: 18  ILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIML--PGLDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ R +     +P++ +S        +  F  G DD + KP            H E   R
Sbjct: 76  EILRRMNEEKDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENYER 135

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   ++             +R+    R   V G+   L ++E  +L +L  +      + 
Sbjct: 136 LKNRFKEGPPPVKAISIRGLRIEKGARRVYVHGQEVNLAQKEFDLLLFLSEHPNHVFGRE 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +IF  ++GL D   +   V  HI+++R+K+  +      V++    GY  
Sbjct: 196 EIFERVWGL-DSLGDSTTVTVHIARIREKIESDPSSPQYVETVWGAGYRF 244


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +         P+R+  +     V G+   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++ 
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 229


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGYKFE 225


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G         +  +      + D+  ++   I       
Sbjct: 4   ILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDI--IMPETDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   Q P+I ++        +   + G DD + KP   +E++ARV A+ RR  +
Sbjct: 62  EILKWIRREHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++   E    +   +  D      + E   +P +E  ++ +L +N+ K   + Q+   ++
Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL++      +++   +GY  + 
Sbjct: 182 G-YDYPGDSRTVDVHIKRLREKLQD-GENWQIETVWGVGYKFEV 223


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++     E    L +     +  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 233

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
 gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
 gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
 gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
 gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
          Length = 222

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +++        +G  ++  N              D+  ++           
Sbjct: 5   ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIM--MPNLDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119
            + ++IR  S VP+I ++        L  FD   DD + KP                   
Sbjct: 63  GVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++       +++  +    E+ GE   L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 123 TINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +  +V++HI  +RKK+        + + + +GY+++ +
Sbjct: 183 -YDYYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLEKD 221


>gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A++ +       D+   +    + E    L  S   DV  ++  L   G   L 
Sbjct: 8   LLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLML--PGIDGLT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R H  +P+I I+        +   ++G DD V KP+   E+ AR+ A+ RR   +
Sbjct: 66  VCRRVREHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTASA 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +     +  D       G    L R E R+L  L A  GK V + Q+   ++G  
Sbjct: 126 RPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWG-H 184

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +  +++ HI +LR+K+  +      V + R  GY I
Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGYRI 224


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  ++   +              V  ++           
Sbjct: 6   ILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVM--MPEMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R IR  SQVP+I ++        +     G DD + KP    E+LAR          
Sbjct: 64  EVCREIRKVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYGV 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   N      + +  +        E   L  +E  ILE  + N+ +  ++  I   
Sbjct: 124 SEPESRGNTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILEL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
           ++G +D   +   V++H+  LR KL      G   + +   +GY +
Sbjct: 184 VWG-YDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228


>gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 234

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +        +G ++      +        A+     +   L+      +
Sbjct: 8   IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMPKIDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R IRA+S VP++ +S   S          G DD + KP    E+      + R A  
Sbjct: 68  EVIRRIRAYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRRATQ 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  ++  +N    G +R+  D      Q E   L  +E  IL    A+  +   K QI++
Sbjct: 128 YASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQIYA 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++   D   +ENV+  H+S+LR K+ +       + +   +GY  +
Sbjct: 188 KVW-NDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGYKWE 233


>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 240

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E     +    +  +       ++  L       +
Sbjct: 4   ILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLML--PELDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R +   P+I ++        ++ F+SG DD + KP   RE              
Sbjct: 62  EVANRLREYKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + N
Sbjct: 182 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVN 233


>gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 234

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++I+D   + +         G  +    + +         + D+  ++  L    G ++ 
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ +       +P+I ++        +   + G DD + KP   R     I A +    +
Sbjct: 66  KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G I + +       +G+V  L  +E  +L+ L  N GK + +  +   +
Sbjct: 126 PDEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G ++ A E   V+ HI  LRKK+  +      +++ R +GY ++
Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLN 229


>gi|256396504|ref|YP_003118068.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362730|gb|ACU76227.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 229

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G  +E            +  R D   ++          L
Sbjct: 3   ILVVDDDQAVRDSLRRSLAFNGYEVELAADGLAALEAIAKRRPDAVVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R +R+  +  P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  ETCRRLRSAGEDLPVLLLTARDAVPDRVAGLDAGADDYLPKPFALEELLARLRALLRRTQ 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S       P+           R+    G+   L R E  +LE LM +  + + + QI  
Sbjct: 121 GSLADQSDAPLAFADLTLDPATREVTRAGKPVRLTRTEFNLLELLMRHPRQVLTRAQILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D     N +E ++  LR+K         + + R +GYS+
Sbjct: 181 EVWG-YDFPTTANSLEVYVGYLRRKTEADELPRLIHTVRGVGYSL 224


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++   +              D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQVAGIPNSGLIQVADLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 7/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D  ++ +   A     G  +E   + +           D   ++  L        E+
Sbjct: 7   IVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLML--PDMPGEEI 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYRRL 119
            + IR  S VP++ +S   S +  +     G DD V KP   RE++ R    +       
Sbjct: 65  CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K+         I +    ++  +  E   L   E  I+  +  + G+  ++  +   I  
Sbjct: 125 KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQE 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                  E  ++ HI  LRKKL         + +   +GY  
Sbjct: 185 DSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDI--QMPRMDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A    P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 71  TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 130

Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +                   R+    R+    G    L R E  +LE  MA+  + + +
Sbjct: 131 YAAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 248

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD A ++          G  +   ++         +   D+  ++          
Sbjct: 10  IILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVM--MPKLDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++
Sbjct: 68  YGVIQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRIE 127

Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +          +    R+ ++ R      E   L   E  +LE L++  G+  ++ +I
Sbjct: 128 KEHIAGLPNSGVIQVASFRIDTNKRKVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEI 187

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 188 LKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +RA S VP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 62  EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 225


>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
 gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
          Length = 228

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        +G  +      E    L   A  D+  ++  L    G +V 
Sbjct: 8   LVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIEVC 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              ++      VP+I +S        +   ++G DD V KP    E++ARV A  RR + 
Sbjct: 68  RQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRRTRP 127

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          I + S+      +G+V  L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 128 STVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 188 R-DIYVDTRTVDVHIGRLRKALCQFGGDDPLRTVRGAGYAL 227


>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 236

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLML--PEMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        N     G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  +   D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR ++
Sbjct: 62  EVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +                 +  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 122 PETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 108/232 (46%), Gaps = 12/232 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   ++         +G  +  F++ E      S    D+  ++  L   G   
Sbjct: 5   LIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIML--PGIDG 62

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++ ++    +P+I ++        +   + G DD + KP   RE++ARV A++R
Sbjct: 63  LEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFR 122

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R+  +N         G I++    R+     ++  +P +E  +L+ L+ N+GK +++  +
Sbjct: 123 RVNTTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPLKEFELLKMLVLNKGKVLSREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI-DWN 223
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY   D N
Sbjct: 183 LDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDDNPTYIETVRGIGYRFTDKN 233


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 6   LLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLML--PGLSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +RA S VP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 64  EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 184 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 227


>gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 234

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 78/231 (33%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +  +     +           + DV  ++  L    G +V
Sbjct: 3   ILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
               R         ++ ++        +    +G DD + KP    E           + 
Sbjct: 63  CTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       N       +  +  +    + E+  L   E  +L   M+  G+  ++T
Sbjct: 123 RHGGQPNQVYRTNHFSVDLDQHLATRQLDNEESELLDLTTLEFNLLSTFMSYPGRVWSRT 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           Q+   ++G  D   +E VV++HI +LRKK+  +      + +   +GY  +
Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHIRRLRKKIEPDPANPSFIKTVIGVGYKFE 232


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   +++    +    G  +      E    L  SA  D+  ++          
Sbjct: 3   VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVM--MPKMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 61  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  T              +G    L   RRE  +L  L     K  ++ Q+   I+
Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   +E  V+ HI +LR++   K     + + R LGY  
Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 221


>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 234

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +E   + +           D+  ++  L   G    E
Sbjct: 5   LIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLML--PGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +RA    P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  VLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYERL 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  E   + + +  R      +   L  +E  +L +L  N  +   K ++F  
Sbjct: 123 TGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G+ D   + + V  HI KLR+K+  +      +++   +GY  
Sbjct: 183 IWGM-DSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGYRF 226


>gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 227

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G +                    +  ++  L   G   +
Sbjct: 7   IYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLML--PGIDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  + VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  TLCKEVRKFTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  ++      S        + +GE   L  +E  +  +L  +  K   + Q+   ++
Sbjct: 125 EENDGDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V+ HI +LR+K+ +   +    +   +GY  + 
Sbjct: 185 G-YEYMGDSRTVDVHIKRLREKIGDGPNWKL-TTVWGVGYKFEV 226


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  + E                 D    + +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230


>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
 gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
          Length = 236

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E         + D+  ++  L    +  +
Sbjct: 5   ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVML--PKKDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKT 171
             N  A            +  ++ E F +           +E  +L YL+  +G+ + + 
Sbjct: 123 FVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 183 HMLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G  +               +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRTRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGD 122

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                         P+R+  D     V G+   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 ELDGNGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +    + + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEADPAKPEHLVTVRGLGYKLE 228


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA S     P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 82/227 (36%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       S E           D   ++      G   L
Sbjct: 5   ILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIM--MPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRKSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                     +  +      L  +E +IL  LM N    + + Q
Sbjct: 123 LFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVLTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +RA   +P+I ++   S    +   + G DD V KP  +RE        L R   
Sbjct: 62  EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +  +   N  + GP+ + SD       G    L  RE  +L YL  + G+ + +  + 
Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+         + ++R +GY +
Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYL 227


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L G +G +    ++             D+  ++  L   G   +
Sbjct: 4   ILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVML--PGMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKKIRASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   +        P+R+  +     V GE   +P +E  +LE L+ N G+ + + Q+  
Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ HI +LR K+  K      V + R LGY  +
Sbjct: 182 RVWGA-DYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGYKFE 227


>gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4]
          Length = 234

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++++D   V       F  +G         +    L  S     D   ++  L   G  
Sbjct: 3   ILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWML--PGMD 60

Query: 60  VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + L R IR     VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR
Sbjct: 61  GITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRRR 120

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         + +  T                 +  L  +E  +L Y + +  +   + 
Sbjct: 121 YEEIQPKGASLHYKESTYFKISKETREIFYQDTAIDGLTPKEFDLLYYFIHHPKQVFTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +E  V+ HI +LRKK+R       + +   +GY  D 
Sbjct: 181 QLLDRIWG-YEYYGDERTVDVHIKRLRKKIRTATHP-FIHTVWGVGYKFDE 229


>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
          Length = 223

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
 gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 233

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 100/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +      E    L      D+  ++  L    +   
Sbjct: 9   ILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVML--PKKDGW 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R I+ +++ P+I ++     +  +  F+ G DD + KP +++ +LARV + + +   
Sbjct: 67  SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +  E G + +               L  +E  +L YL+ N    +++ ++ + ++G 
Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   ++  +++HI  LRKK+    G + + + R +GY +D
Sbjct: 186 YDFLGDDRTIDTHIKNLRKKI----GKNAIKTIRGIGYKLD 222


>gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G                     ++  ++  + G  G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   ++G DD + KP   +E+ AR+ A+ RR+ 
Sbjct: 65  IKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++         +     +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PTSVDEVIEVQGLKLDPVSHRVSAEERALDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225


>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 228

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 8   ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     A    +G         +    +    R D+  ++           E
Sbjct: 4   LIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVM--MPKIDGFE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IR  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR++  
Sbjct: 62  VCRVIRKTSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQPK 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +                     +    ++E  IL  L   + +  ++  + + ++G
Sbjct: 122 TENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKLWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
            +D   +   V+SHI +LR KL         + +   +GY  + 
Sbjct: 182 -YDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGYKFEV 224


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  +   D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
 gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 225

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  GVLKRLRETHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +      E    L      D+  ++  L    +   
Sbjct: 4   ILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIML--PKKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+ +S VP++ +S     +  L  F+ G D+ + KP +++ +LAR+ A+ +    
Sbjct: 62  SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKNTSN 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G I +        V GE   L  +E  +L YL+ N    +++ ++ + ++G 
Sbjct: 122 NTDHIIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    +  +++HI  LRKKL      + + + R +GY  +
Sbjct: 181 YDFPGSDRTIDTHIKNLRKKLGE----ECIKTVRGIGYKFE 217


>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +   D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVITINNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU121]
          Length = 236

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E       S++ D+  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
            N                  ++ E F +           +E  +L YL+  +G+ + +  
Sbjct: 124 VNEVEHNETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   +++    +    G  +      E    L  S   D+  ++          
Sbjct: 28  VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVM--MPKMDG 85

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 86  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 145

Query: 121 VSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  T                 G    LPRRE  +L  L     K  ++  +   I+
Sbjct: 146 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 205

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   +E  V+ HI +LR++   K     + + R LGY  
Sbjct: 206 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 246


>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 228

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++         G  +      +    L  + + D+  ++      G   L
Sbjct: 6   ILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLM--MPGTDGL 63

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           E+ R +    A +++P+I ++        +   + G DD V KP   R     I A +  
Sbjct: 64  EVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILRR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    E   +R+  +     + GE   L   E ++L  L++  GK   +  + 
Sbjct: 124 YGAPEPNAPKLWEREGLRIDFEAHQITIDGEETALTATEFKLLTVLVSGAGKVQTRDNLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++           V++H+ +LR+KL        +++ R +GY  
Sbjct: 184 DTVWDTH-FEGYSRTVDTHVRRLRQKLGPY--APWIETIRGVGYRF 226


>gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 237

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   V D        DG  +    +      L +S   D+  ++  L       L
Sbjct: 6   ILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLL--PDTNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  ++ P++ +S   +    +     G DD + KP    E++AR+ A  RR ++
Sbjct: 64  ELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRI 123

Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N+  +          + +        V  +   L  +E  IL  L  +     + TQ+
Sbjct: 124 LTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+G+ D   +   V  HIS LRKK+  +      + + + +GY +D
Sbjct: 184 YDHIWGV-DNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLD 231


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                 SA  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 AGGEGLDDGVLEGGPVRMDVERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEADPANPKHLVTVRGLGYKLE 228


>gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS678]
          Length = 229

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLMLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225


>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++           ++             +  R D+  ++          L
Sbjct: 10  LLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVM--MPALDGL 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  + P++ ++   + Q  +D  D+G DD V KP    E+ AR+ A+ RR +
Sbjct: 68  AVCRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRRTR 127

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +    R       V      E  +L  L+ N G+ + +  I   ++G
Sbjct: 128 DVGGDRLAFADLTLDEATRQGVRGSRVIQFSETEFALLALLVRNAGQVLTREIITDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N V+ ++  LR+KL        V + R +GY +
Sbjct: 188 -YDFGPSSNSVDVYVRYLRRKLEADGEPRLVHTVRGIGYQL 227


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLML--PGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 63  VCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGED 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V     E GP+R+  +     V+G+   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGYKFE 225


>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +       F   G  +    +      +    +  +  ++  L    G  V
Sbjct: 6   ILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGMSGLDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               + +     VP+I ++        +   + G DD V KP   RE++ R+ A+ +R +
Sbjct: 66  CRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKRAQ 125

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    ++       D    EV GE   L   E R+L  L+ NRG+   + Q+ +
Sbjct: 126 GVAENPQRSQWQIDGLALDLDAHRVEVDGEEAALTATEFRLLAELVRNRGRVRTRDQLLN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++       V++H+ +LR+K+        +++ R +GY  
Sbjct: 186 TVWG-YEFEGYARTVDTHVRRLRQKIG--GYAAMIETIRGVGYRF 227


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++                  D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +               ++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EHAAGIPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   +  D++ ++  L   G   L
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWML--PGLTGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R +RA  S VP+I ++    +   +   D+G DD V KP    E+LAR+ A   R  
Sbjct: 63  EICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +  +   + +    R+   +     L  +E  +LEYL+++  +   + QI   ++G
Sbjct: 123 ETAEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        + + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENNEKRLIHTVRGVGYAL 222


>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 241

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 TSAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEV 233


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDI 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 233

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + D        +G      ++ +    +  +   D++ ++           E
Sbjct: 7   LIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIM--MPKIDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR    +P+I +S   +    +     G DD + KP +  E++ARV A  RR    
Sbjct: 65  VTRQIREKHHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQLRRFIQL 124

Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N                     + R   + GE   L  +E  IL  L  +  K  +   I
Sbjct: 125 NPSVAGPTDEPVLEAGGLVIHPEHRTVFLYGEPVELTPKEFDILVLLANHPKKVFSSEHI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LRKKL  ++     + +   +GY+ +
Sbjct: 185 FEKVWGEAYYEGG-NTVMVHIRSLRKKLGEDRHKNKLIKTVWGVGYTFN 232


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 11  ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLML--PKIDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 69  EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 189 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   + +        +G       +             D+  ++  L    G +V 
Sbjct: 5   LIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMGTEVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
              R       +P++ ++        +  F+ G DD + KP   RE++ R+        +
Sbjct: 65  SALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRSSQ 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +  +   G I +        V G    L   E ++L YL  + G+ + +  +   +
Sbjct: 125 EPDTTERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQDV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++H+++LR KL +    + + + R  GY ++ 
Sbjct: 185 WG-YNFVGDTRTVDTHVTRLRNKLGDAG--EMIKTVRGFGYKLEE 226


>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 237

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + +    +  + + D+  ++  L   G   +
Sbjct: 9   ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLML--PGMDGI 66

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109
           ++ + +    +    P+I ++        +   + G DD + KP   RE           
Sbjct: 67  QICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRR 126

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +       R +          + +  +     + G    L  +E  +L+ L  NRGK ++
Sbjct: 127 SESKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLS 186

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   I+G ++   E   V+ HI  LR+K+ +    + +++ R +GY +
Sbjct: 187 RNLLLDEIWG-YEYFGETRTVDVHIRHLRRKIGDDKSNEYIETIRGIGYKM 236


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 VSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G +     +          +  D+  ++  L+  G   +
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLD--LMLPGMNGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++     +  +   ++G DD + KP  H E+LAR+    R  + 
Sbjct: 67  EVCQQIRRSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRES 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I +  DGR  +      P+   E  +L  L+ + G+ +++ ++   ++G  
Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYT 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  V +++V  H+ +LR K         + + R +GY I
Sbjct: 187 D--VSDSLVNVHVQRLRAKFDELGADRFIQTVRGVGYKI 223


>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 227

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +  ++G+ ++               R DV  ++  L   G   LE
Sbjct: 8   LVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVML--PGIDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IRA S VP++ ++        +   +SG DD V KP   +E++ARV A   R   V
Sbjct: 66  VCRRIRAESGVPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDDV 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + +   G   + +GE   L   E  +L  L     +   +  +   ++G +
Sbjct: 126 EPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 185 RHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYR 223


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    + +    D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIML--PKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E   +          + R   + G+   L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++G ++   +   V+ H+ +LR+K+  N      V  K  +GY    N
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGYYYSQN 230


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G +     +          +  D+  ++  L+  G   +
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLD--LMLPGMNGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++     +  +   ++G DD + KP  H E+LAR+    R  + 
Sbjct: 67  EVCQQIRRSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRES 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I +  DGR  +      P+   E  +L  L+ + G+ +++ ++   ++G  
Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYT 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  V +++V  H+ +LR K         + + R +GY I
Sbjct: 187 D--VSDSLVNVHVQRLRAKFDELGADRFIQTVRGVGYKI 223


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G  +   +         ++   D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ + +RA S VP+I ++   S    +   + G DD V KP   R               
Sbjct: 62  DVCKQLRATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V+A  +   +     E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 VSAESQEEGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKFE 231


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        +  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|331694656|ref|YP_004330895.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949345|gb|AEA23042.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 233

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E     +       ++R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRT 120

Query: 121 VSNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                A                  D RD         L R E  +LE L+A+  + + + 
Sbjct: 121 PDEIAAAAAGASKPLEFADLSLDPDTRDVRRGDRPISLTRTEFSLLELLLAHPRRVLTRA 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 QILEQVWG-YDFPTTGNALEVYIGYLRRKTEAGGEPRLIHTVRGVGYVL 228


>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
 gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 86/238 (36%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     +    L    + D+  ++  L   G+   
Sbjct: 7   ILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIML--PGKDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------------- 107
           ++ R IR  S+VP+I +S    +   +   + G DD + KP   +E              
Sbjct: 65  DVCREIRKTSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124

Query: 108 ----ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                 +           + NR     + +           +   +P +E  +  +L ++
Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   + Q+   I+G ++   +   V+ H+ +LR+K+ +   +    +   +GY  +
Sbjct: 185 PNQVFTREQLLDRIWG-YEYIGDTRTVDVHVKRLRQKINDHAEWRL-STVWGVGYKFE 240


>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
 gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
          Length = 221

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V G+   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNGKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 234

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++I+D   + +         G  +    + +         + D+  ++  L    G ++ 
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVDGLEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ +       +P+I ++        +   + G DD + KP   R     I A +    +
Sbjct: 66  KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G I + +       +G+V  L  +E  +L+ L  N GK + +  +   +
Sbjct: 126 PEEEKEEIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G ++ A E   V+ HI  LRKK+  +      +++ R +GY ++
Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLN 229


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAI 115
           E+ R +R+     P++ ++   S+   +   D+G DD + KP        R         
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   +   + +    R+         L R E  +LE L+AN  + + +++I  
Sbjct: 121 PDDEDAESVAMKFSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSRILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 EVWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 224


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++        +  + D+  ++  L     +  
Sbjct: 9   LIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIML--PDGEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A      Y
Sbjct: 67  DICKQIRDVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +    + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++  
Sbjct: 127 LQPSQAEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQT 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ N     + + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIENSPSTPEFLVTVKGLGYKF 230


>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 233

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N  E    L  S   D+  ++  L    +  +
Sbjct: 6   ILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLML--PKKDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E           I ++ D    +  G+   L RRE  +  YL  + G+ + +  +
Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
              ++G +D   +   V+  + +LR+K+  +    + + ++R +GY
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGY 228


>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
           TK24]
 gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 17  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDI--QMPRMDGL 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A    P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 75  TAARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++      + +    R+    G    L R E  +LE  MA+  + + + 
Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 195 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 242


>gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 217

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G                     D+  ++  L   G    
Sbjct: 4   ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIML--PGLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I   ++ P I +S   S+   +  F  G DD + KP    E+LARV A+ RR + 
Sbjct: 62  EV---IEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQR 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  E G +++          G+      +E  +LE L+ NR   +++ ++   ++G +
Sbjct: 119 TASCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWG-Y 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   V+ HI KLRKKL      D + +   LGY ++ 
Sbjct: 178 DFEGDTRTVDVHIQKLRKKLEW---EDRIKTVYKLGYRLEV 215


>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G S       +    + ++ + D   I+            
Sbjct: 9   LIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIM--MPKMDGFS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S VP++ ++        +     G DD + KP    E++AR+ A+ RR   +
Sbjct: 67  LCERIRWQSDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRAYHA 126

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N   +     +   GR   V GE   L  +E  +L +L  +RG+  ++ ++ + ++G +
Sbjct: 127 GNHDLSFGPLTIDERGRKVTVDGEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D       V++HI  LR KL+     + + +   +GY  + 
Sbjct: 186 DYTGNVRTVDTHIKTLRMKLKQAS--EFIHTVWGIGYKFEV 224


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRSLRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGDV 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+R+  D     V+G+   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  D
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGYKFD 225


>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +           G  +           L       +  ++  L    G  V
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMDGLDV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
               R     + VP+I ++        L   + G DD + KP   RE++ARV        
Sbjct: 65  TRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G + +  + R      E+  L   E  +L  L +  G+   + Q+   I
Sbjct: 125 GHLQPTKVIQAGRLTIDLERRIVRRDNEIIELTATEFELLTILASAPGRPFTRAQLLDRI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           Y   +    +  +++HI  LR+K+          + +   +GY  
Sbjct: 185 YNT-NYIGFDRTIDAHIKNLRRKIEPDPNGPPRLILTVYGVGYKF 228


>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    +      L      D+  ++  L        
Sbjct: 12  LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVML--PDMDGF 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R +R   +  P++ ++   S+   +     G DD V KP         +  V    R
Sbjct: 70  AVTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 129

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      + +  D  +    G V      E ++L YLM N  + ++K QI   +
Sbjct: 130 GDIDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+  +     + +KR +GY +
Sbjct: 190 W-EYDFRGESGIVESYISYLRRKIDTEGLPPLIHTKRGVGYVL 231


>gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
 gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
          Length = 257

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   N       +  S   D+S     ++  G   L
Sbjct: 27  ILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEE-DISLAILDIMMPGMDGL 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I +S   +    +    +G DD V KP +  E+ ARV A  RR   
Sbjct: 86  SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFTE 145

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N+  + G                   R+     +   L   E  IL  L +N G+  + 
Sbjct: 146 FNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFST 205

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             IF+ ++         N V  HI +LR+K+  +      + +   +GY I+ 
Sbjct: 206 DDIFTRVWNEKAFEGN-NTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIEK 257


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G ++E     +  E     ++ D+  ++  L   G   +E
Sbjct: 5   LIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWML--PGLSGIE 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +RA ++    P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 63  LCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            +    +       G+   L   E R+LE+LM + G+  ++ Q+   +
Sbjct: 123 RPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK +      DP+ + R  GY+ +
Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKAINRGKVKDPIRTVRGAGYAFN 225


>gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
 gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
          Length = 228

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G  +               A+ D+  ++  L   G+  +E
Sbjct: 6   LIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVML--PGKNGVE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   ++G DD VNKP    E++ARV A  RR    
Sbjct: 64  VCRAIRAESDVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAELVARVRARLRRGDAE 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +          G    L   E  +L  L     +  ++  +   ++G + 
Sbjct: 124 PETVTIGDLTIDLAAHSVTRDGTPISLTPLEFDLLLALARKPWQVFSREVLLEQVWG-YR 182

Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 HAADTRLVNVHVQRLRAKVEKDPEKPEIVVTVRGVGYK 220


>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 255

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +     +G    G  + E    L      D+  ++  L   G    
Sbjct: 24  ILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLML--PGISGT 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            L R +    +VP+I ++   +    +   + G DD V KP   RE+LAR+         
Sbjct: 82  TLCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 141

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     GPI +     +  + GE+   P +E  +LEYLM N+G+ + + Q
Sbjct: 142 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 201

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+  +      + + R LGY I
Sbjct: 202 LIGRVWG-SDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 249


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 262

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-----VSAIEAFLIGK 56
            ++++D   +++  +    ++G  +   +       L     ED     V  I   ++  
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 57  GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               L++ R +R      P++ +S   S    +   + G DD + KP   +E++AR  A+
Sbjct: 93  QVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM 152

Query: 116 YRRLKVSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR  ++ N                     ++GE   L  +E R+LE  M+   +  ++ 
Sbjct: 153 IRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSRE 212

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+   I+G+ D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 213 QLIEHIWGI-DFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229


>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 246

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 15  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDI--QMPRMDGL 72

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   A              R+    R+    G    L R E  +LE  MA+  + + + 
Sbjct: 133 YAAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240


>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   D+  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEGYYE-SGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
 gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E    L      D+  ++  L        
Sbjct: 4   ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVML--PKHDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
           E+ + IR  S +P+I ++        +   + G DD ++KP +              +  
Sbjct: 62  EVCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               R+ + +++    G +++ ++ R   + G    L  +E  +LE L+ N  K  ++  
Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + + ++G       +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGYYF 231


>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 239

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  ++     +    +  +    +  ++  L       L
Sbjct: 8   ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLML--PKIDGL 65

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LAR 111
           E+ RI+    +  ++P+I ++        +   + G DD + KP   RE+       + R
Sbjct: 66  EVCRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRR 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V    +  +  ++  E   + +     +  + G    L  +E  +L+   AN     ++ 
Sbjct: 126 VEDRRKPEEPEHSVNEFNDLVIDEQKHEVLLSGSRLDLTLKEYELLKVFAANPFNVFSRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
            +   ++G +D   +   V+ H+  LR+KL          +++ R +GY  
Sbjct: 186 HLLEKVWG-YDFMGDTRTVDVHVCNLRRKLEEADDKTGYYIETVRGVGYRF 235


>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDI--QMPRMDGL 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  TAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N+      +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 131 YAAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 238


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLML--PKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   AE             +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 228


>gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 229

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLLLDPVSHRVSVGETVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226


>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
 gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
          Length = 229

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +         ++G       S      L    + D++ ++  L        
Sbjct: 5   ILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVML--PDCSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
            L   IR+H   P+I ++        +     G DD + KP +  E+        R    
Sbjct: 63  HLCEEIRSHYNYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRRYMR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   K  +N  +   + +     +  + GE   L   E  IL+ L  NRGK ++   +F 
Sbjct: 123 YNSQKRDDNIIDFQGLILNCSTHECTLYGEKLNLTPTEFSILQMLCENRGKVISSQDLFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           +I+         N V  HI ++R+K+         + +   +GY I+ 
Sbjct: 183 SIWKEKYFE-SNNTVMVHIRRIREKMHEQPRNPKFIKTVWGMGYKIEK 229


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 248

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++          L
Sbjct: 17  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDI--QMPRMDGL 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A    P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 75  TAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++      + +    R+    G    L R E  +LE  MA+  + + + 
Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 195 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 242


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G I +  D R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 225

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223


>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   +  +    L      D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 DQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 123 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 225


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +   + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 ASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 225

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ H+++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 223


>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54
            ++++D  L+++       ++G  +              S          D+  ++  L 
Sbjct: 21  ILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EIL 109
                 L++ R++    + VP++ +S   S    +   + G DD + KP   R       
Sbjct: 80  -PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A +              +   + +        V+ +   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  +   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWG-PEFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGYRF 249


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G+                  R  V  ++  L         
Sbjct: 34  LVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVML--PDTDGFT 91

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R    Q P++ ++   S    +   + G DD V KP   RE+           + 
Sbjct: 92  LCRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPREL--VARIKALLRRT 149

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R + GPI +   G +    G+   L   E ++L  L +  G+  ++ ++   ++G  
Sbjct: 150 EGRRQQVGPIVIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWGE- 208

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D   +   V+ H+  LR+KL  N    + + + R  GY ++
Sbjct: 209 DAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLN 249


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L    +  +
Sbjct: 6   ILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIML--PNKDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +  ++ 
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 233

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L G +G  +E  ++             D+  ++  L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQL--PGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S VP+I ++   +    +   + G DD V KP   R     + A +     
Sbjct: 62  EVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ ++  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGYKFE 225


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 ASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
 gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 237

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++        +   +    + +    L  + + D+  ++  +  K     
Sbjct: 5   ILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQK--NGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP    E++ R+  I+RR   
Sbjct: 63  ELCEEIRQKSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRRGSQ 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +         E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VSIQAKDSLLELIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+G F+     N V   +S+LR+KL         + +   +GY  + N
Sbjct: 183 LELIWG-FEYEGVSNTVTVLVSRLREKLEKHTIKNRWIHTIWGIGYRFEPN 232


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +E             S   D+  ++  L       +
Sbjct: 4   ILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIML--PSMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQVP+I ++   ++   +   DSG DD + KP    E+    R A   R +
Sbjct: 62  EVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +     GP+ +  +  +  V+G    L RRE  +L YL+ N+ K +++  +   ++G
Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
            FD   E N V+ +I  LR K+    G   + + R +GY I + N
Sbjct: 182 -FDFVGETNAVDVYIRFLRAKIDEAFGIKLIHTVRGVGYVIREEN 225


>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 227

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   ++D        +G  +           +    + D+  ++  L   G   
Sbjct: 4   LILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLML--PGLSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
            E+ + IR  +  P+I ++        L   + G DD + KP   RE  +  +      R
Sbjct: 62  WEVMKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  +  +  +   +  L   E +IL  L  N G+  ++  I   ++
Sbjct: 122 PHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           G       E  +++HIS LR K+      +  + +   +GY +
Sbjct: 182 GDI-YEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 243

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGVPGIPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233


>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLML--PKISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E+   IR  S V +I ++     +  L+    G DD + KP   RE++       R A  
Sbjct: 65  EVCSKIREFSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +     +     G + V          G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
 gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
          Length = 223

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
 gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
          Length = 241

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233


>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 233

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   +  +    L      D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236


>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 238

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 88/233 (37%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +    +     E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREIL 109
           E+ R +R  S +P+I +S    +   +   + G DD + KP               R + 
Sbjct: 65  EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++  +     +   +      + +          G+   +P +E  +  +L ++  +   
Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + Q+   I+G ++   +   V+ HI +LR+K+++ + +    +   +GY  + 
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEV 235


>gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 248

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +           L  +   D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVML--PGMSGTD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 60  VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +         P+R+  +     V G+   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 120 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++ 
Sbjct: 180 RVWGA-DYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 226


>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 233

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  ++     +  E L +    D+  ++  L   G   +E
Sbjct: 4   LIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWML--PGLSGIE 61

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R IRA  +    P+I ++        +    +G DD + KP    E+    R      
Sbjct: 62  LCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    ++R   G + +   G      GE   L   E R+LE+LM   G+  ++ Q+   +
Sbjct: 122 KPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  D  ++E  V+ H+ +LRK L      DP+ + R  GY+ D 
Sbjct: 182 WG-HDVYIDERTVDVHVGRLRKALNGPRQADPIRTVRGSGYAFDE 225


>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 226

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD   +++         G  +E     E       +   D+  ++  L    G   
Sbjct: 4   ILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL-NDSIDLIILDLMLPRIDGLSF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
               R       +P+I ++        +   + G DD + KP   RE++AR         
Sbjct: 63  CRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLRRVQ 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N   +     +     +    GEV  L  +E  +L +L+ N GK + +  +  
Sbjct: 123 KNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDILLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++ A +   V+ HI +LR+K+ +    + + + R +GY  
Sbjct: 183 KVWG-YEYAGDTRTVDVHIRRLRRKIGD----NYIVTVRGVGYKF 222


>gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067]
 gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171]
          Length = 225

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G ++      E  E + +S +  ++ I+           
Sbjct: 4   ILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLM--MPKMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR ++ ++P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRST 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++          +       ++      +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKIKIGQLTIDQKSYGIKIGNRELMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  ++ HI +LR     +     + + R +GY ++ 
Sbjct: 181 KRDYDGSDRTIDVHIKRLRDHFDEEKAGIRITTVRGVGYKLEE 223


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDV 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           P+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDPGVPDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
 gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
          Length = 239

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +     +        +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYQTQWLTRGDEVVAAVRQSPPAIILLDLML--PGSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRPL 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG    L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 PQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232


>gi|291563400|emb|CBL42216.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 230

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L+DD   ++         +G+ +           L    +  +  ++  +    G  V
Sbjct: 6   ILLVDDERAIRLAVRTALTREGMQVTEAADGSEALELLKKQQFHLVILDVMMEHVGGYDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R   A    P++ +S        +     G D  + KP H   ++    A+ RR +
Sbjct: 66  LQAMRA--AGDHTPVMMLSGKSDEMDQVLGLGFGADSYLTKPFHTAILIQTAKALIRRSQ 123

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +           GP  V +   +    GE      RE  +  +LM + G+   K Q++
Sbjct: 124 IYSQGAAGDAGIRKGPFTVDTLKMECLKNGEPLNFTAREMTLFRFLMEHPGQVFTKEQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           + ++   +  V++N +  ++ ++R K+ +       + + R +GY ++ 
Sbjct: 184 TQVWN--EAVVDDNTITVYVKRIRNKIEDDPKQPRYLKTVRGIGYMLNV 230


>gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
          Length = 236

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E        ++ D+  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
            N   ++             ++ E F +           +E  +L YL+  +G+ + +  
Sbjct: 124 VNEVEQSETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D         G   +     E         + D+  ++  L   G   +E
Sbjct: 6   LVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWML--PGIDGIE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +RA+   + +P+I ++     +  +     G DD VNKP    E++AR+ A+ RR 
Sbjct: 64  FIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLRRC 123

Query: 120 KVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  ++              +      V      L   E R+L + M N  +   ++Q+  
Sbjct: 124 QPDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     +EE  V+ HI +LRK L +      + + R +GY  
Sbjct: 184 YVWGDTVY-IEERTVDVHIRRLRKALESSGHDHLIQTVRGVGYRF 227


>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
 gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
          Length = 223

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 268

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G +++  +  +    +  +   D + ++  L G     + 
Sbjct: 49  LVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGP--DGIS 106

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ +S     +  ++  +SG DD + KP    E++AR+ A+ RR   
Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166

Query: 122 SNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                        +   R+     +   L  +E  ILE LM   G+   +TQ+   ++  
Sbjct: 167 IGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW-N 225

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      N+V+ +I KLRKK+        + + R +GY I+
Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266


>gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)]
          Length = 225

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    S E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  + +     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESTDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    +  +   D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR ++
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                      D    + +G+   L  RE  +L +L  + G+ + +  
Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232


>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 248

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++                  D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                + ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 ENAAGIPNSGMIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  ++     E    L ++ + D+  ++   +  G    
Sbjct: 5   ILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDV--LMPGTDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S +P++ ++    +   +   D G DD + KP    E+LAR+ A+ RR + 
Sbjct: 63  EVCRRLRAGSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++                 R+    G    L  RE  +L   M +  + + + QI   ++
Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D   E NV+E ++  LR+KL        + + R +GY +
Sbjct: 183 GI-DYGGESNVLEVYVGMLRQKLEEGGEKRIIHTVRGVGYVL 223


>gi|54026938|ref|YP_121180.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018446|dbj|BAD59816.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 228

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G +++            ++ R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLTFNGYTVDLAVDGVDALEKATAQRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRA 120

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                R+         L R E  +LE LMAN  + + +++I   
Sbjct: 121 PDPGDTSETLRFADLSLDPVTREVSRGDRAISLTRTEFSLLEMLMANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 223


>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 227

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLML--PEMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSTE 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 AAEPGAPTLAAGPVRMDIERHVVTVNGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR KL         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKLEPEPSAPRYIVTVRGLGYKFE 226


>gi|777765|gb|AAB38544.1| srrB [Synechococcus sp.]
          Length = 237

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + V+   +      G  +E                 D+  ++  L        
Sbjct: 6   ILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNL--PDTNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           +L  I++  + V +I ++        L  F  G DD + KP     + AR+         
Sbjct: 64  QLCEIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S        +++    R+    G+   L   E  +L +L  +  +   +  +  A+
Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNALIQAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  +D   ++ VV+ HI ++RKKL        P+ + R +GY  +
Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227


>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++   ++      L +    D+  ++          +
Sbjct: 5   ILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVM--MPVLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
                IR    +P+I +S        ++    G DD + KP    E+        R    
Sbjct: 63  SACLKIREDYTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRRYKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +++      + +  D  +  V+G+   L  +E  ILE L  NRG   +  +++ 
Sbjct: 123 FNVEPQNSSSITIEELTINFDTHEVTVRGDKIKLTPKEFDILECLAKNRGVVFSVQKLYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+     AV +  +  HI+ LR+K+  +      + +   +GY I
Sbjct: 183 TIWNE-QFAVSDTSIVVHITNLRQKIEIDPKSPKYIKTVWGVGYKI 227


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLML--PKVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREAT 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  N   + G I +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 AQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229


>gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G                     D+  ++  L   G   L+
Sbjct: 11  LVVEDEPKLSRLLADYLAAAGFETACLADGLAVVPEVRRRLPDLILLDLML--PGRDGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP++ ++        L   + G DD + KP   RE++ARV AI RR +  
Sbjct: 69  ICRELRAFSDVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARVKAILRRSQRH 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +  +G     QG    L   E R+L  L +  G+  ++ Q+   +Y    
Sbjct: 129 GALPADAGLTIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQLLDHLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             V +  V+SHI  LR+KL       + + S   +GY ++
Sbjct: 188 RVVTDRTVDSHIKNLRRKLEQAAPQQEMIRSVYGVGYKLE 227


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE              
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     +  N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 221

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S +P+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G      ++           + D+  ++  L       +
Sbjct: 5   ILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIML--PEMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++ + IRA  SQ P+I ++    ++  +   D G +D V KP    E    +       +
Sbjct: 63  DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQ 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +      G + +    R+    G+   L  RE  +L YLM +  + + + QI   +
Sbjct: 123 KASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   + NVV+ +I  +R+KL        + + R +GY +  N
Sbjct: 183 WG-FDYYGDTNVVDVYIRYVRQKLEIANVTPIIQTVRGVGYVLKEN 227


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDA 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           P+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDAGIGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  E     +  D+  ++  L   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +R   +    P+I ++        +    +G DD V KP    E+LARV A    
Sbjct: 63  ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +        G I +  +       G    L   E R+LE+LM + G+  ++ Q+   
Sbjct: 123 AKPEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS + 
Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKAINRGRQSDPIRTVRGAGYSFNE 227


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLML--PKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   AE             +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 228


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   N    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 ASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++      E    L +  R D++ ++       +  L
Sbjct: 6   ILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVM--MPKKDGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           ++ R +R+H    P++ ++   S++  +   D+G DD + KP          R +  R A
Sbjct: 64  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   +        + +  + RD         L R E  +LE LM N  K +++  I
Sbjct: 124 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K         + + R +GY++
Sbjct: 184 LEEVWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 229


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +     A    +G +       E    L          ++           
Sbjct: 4   ILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVM--MPKMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARVA 113
           E+ R IRA S VP+I ++        +   D G DD + KP    E++          VA
Sbjct: 62  EVCRKIRAKSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVA 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  +   + +  D     + GE   L ++E   +  L  N  K   +  +
Sbjct: 122 PESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             +++G FD   +   V+SHI +LR KL      +  + +   +GY  D
Sbjct: 182 LDSLWG-FDYFGDSRTVDSHIKRLRAKLDTVEHPNWCIKTIWGVGYKFD 229


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G S    +  +    +    + D+  ++  L        
Sbjct: 5   ILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPM--VDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I ++       +L   + G DD + KP   R+++AR+ A+ RR+  
Sbjct: 63  TVCRTLRAESSVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRVNG 122

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                                    Q  +  L   E  +L  L+ + G+ + ++Q+  A+
Sbjct: 123 ELEPPMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            G   EA +   V++HI  +R+K+         + +   +GY  
Sbjct: 183 QGEEGEAYD-RTVDAHIKNVRRKIEPNPSVPRYILTVFGVGYKF 225


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 21  ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111
           E+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+             
Sbjct: 79  EVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 138

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +         + G + +  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 139 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 199 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 250


>gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
 gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
          Length = 229

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      S    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVMANDDALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETAGHDKLIQTVRGAGYRF 225


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     E  +        D+  ++  +   G   +
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMV--PGLSGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R IRA  +    P+I ++        +    +G DD V KP    E+LARV A    
Sbjct: 64  ELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +    G I +         QG    L   E ++LEYLM + G+  ++ Q+   
Sbjct: 124 AKPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D 
Sbjct: 184 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDE 228


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L    R D+  ++  L        
Sbjct: 12  LLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVML--PDVDGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + VP++ ++        +     G DD V KP    E++AR+ A+ RR  
Sbjct: 70  TVTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 129

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       +        D  +    G    L   E ++L YLM N  + ++K QI   
Sbjct: 130 GVDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  +VES+IS LR+KL  +     + +KR +GY +
Sbjct: 190 VWD-YDFNGEAGIVESYISYLRRKLDTEGLEPLIHTKRGVGYVL 232


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    +  + + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLML--PEVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRADL 121

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  +   N    G +++  D    +  G+   L  RE  +L +L  + G+ + +  
Sbjct: 122 VVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E      +    D+  ++  L       L
Sbjct: 7   ILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLML--PKMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 65  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   A+             +  D       G    L  RE  ++ YL  + G+ + +  +
Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 185 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYL 231


>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +   +       +  SA+ D+  ++           
Sbjct: 4   ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR H  +P + ++        L  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCAEIRDHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRI 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++++        +       +V G+   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 122 ASSQTVQAGDLILDRKTYVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR++         + + R LGY ++ 
Sbjct: 181 YDFEGNERTLDVHINRLRERFPESQHTFRISTIRGLGYRLEV 222


>gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51]
 gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 225

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  + G                S A   ++ I+           
Sbjct: 4   IMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLM--MPNMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R + +  P++ ++        +  F++G DD + KP    E+L RV A+ RR +
Sbjct: 62  ELCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRRYR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++           +     + G    +P +E  +L  L    G+   + Q+   ++G
Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ HI +LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLGYRLEV 223


>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 259

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++         G  ++             +   D+  ++  L   G   L+
Sbjct: 39  LVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLL--PGLDGLQ 96

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + R IR  + VP++ ++        +   + G DD + KP    E++ARV +        
Sbjct: 97  VCREIRRSNAVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRRAVAA 156

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G   PL   E R+L  L    G+   +  +   ++  
Sbjct: 157 PEPGPLRIGRLEIDPGAFVARRDGHELPLTATEFRLLLELARRPGQVFTRELLLERVW-E 215

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                +  +V+  + +LR K+ +       + + R  GY +
Sbjct: 216 QGYLGDSRLVDVAVQRLRAKVEDDPASPRLIRTVRGAGYKL 256


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G         E      +S + D+  ++  L    +  L
Sbjct: 4   ILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLML--PKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR  S VP+I ++        +   + G DD V KP  +RE           ++V
Sbjct: 62  EVCREIRKTSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K  +N    G + +  D       G+   L  RE  +L YL  + G+ + +  
Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +  N
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDN 232


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G S E   +             D+  ++  L   G    E
Sbjct: 5   LIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLML--PGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R    VP+I ++   S    +   + G DD + KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKQLRGRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGADA 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++         P+R+  D     V G    LP +E  +LEYL+ N G+ + + Q+   ++
Sbjct: 123 DDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKLE 225


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 6/227 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +       + G  +   N+      L       +  ++  + G  G  V
Sbjct: 6   ILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            +  R       + +I ++        +   + G DD + KP   RE    +  V    +
Sbjct: 66  CKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRRTK 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  S    +T  I +  + R+  +  +   L  +E  +LE L+ NRGK + +  +   I
Sbjct: 126 SLGGSEEIFKTNGILINFERREVLISDKKIDLTLKEFELLEILVKNRGKILTRETLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      +++ R +GY  + N
Sbjct: 186 WG-YEYVGETRTVDVHIRYLRKKIEVDDKNPKFIETIRGVGYRFNPN 231


>gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
 gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
          Length = 230

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +    L      D+  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVEGHDRLVQTVRGAGYRF 225


>gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 231

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++                  D   ++  + G      +
Sbjct: 8   LIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGP--SGYD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV----NKPIHHREILARVAAIYRR 118
           + R IR +  VP++ ++        +     G DD +            I A +    R 
Sbjct: 66  VLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRRG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +     +  V G+   L  RE  +L+    +  +   + Q+F  ++
Sbjct: 126 EPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLW 185

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G   E  + + V  HI +LR+K+  +      + +   +GY  D
Sbjct: 186 G---EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFD 226


>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+G+   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 234

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   + D        +G  +      +    L +     +  ++       +   
Sbjct: 4   ILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIM--MPIQDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
            +   +R     P+I ++     +  +     G DD + KP            IL RV  
Sbjct: 62  HVAEQVRVSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRRVYR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +    G +++ +D R  E   +   L  +E  +L  L  +  +  +K+Q+ 
Sbjct: 122 TGGVKEEQPSLIRFGELKIDTDRRLVERNRKEIELTVKEYDLLVLLSRHPKQVFSKSQLI 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   + N V  HI +LR+K+  +      + +   +GY  +
Sbjct: 182 EKVWG-YEYDGDANTVNVHIRRLREKIEMDPSNPQFIHTVWGIGYRFE 228


>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
 gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 233

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L    +  +
Sbjct: 5   ILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIML--PNKDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +  ++A
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +N  E G + ++ D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++     E    L +     +  ++          +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  N      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230


>gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 248

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +           L  +   D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEK 128

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           P+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDVGVADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227


>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 233

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 224

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  S+R D+  ++  L   G   +
Sbjct: 5   ILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLML--PGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S VP++ ++        +   +SG DD V KP    E++ARV A  R    
Sbjct: 63  EVCRQVRAESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +   G       E   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 KAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221


>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 221

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE LM+N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 228

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +     S+E  + L   A  D+  ++  L   G   +
Sbjct: 5   ILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWML--PGMSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E  R +++      +P+I ++        +   + G DD V KP   RE+ AR+ A    
Sbjct: 63  EFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +++++  E G +R+          G+   L   E R+L YLM+N  +  ++TQ+   
Sbjct: 123 RAPQMTDDPLEIGGLRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LR+ L      + + + R +GY  
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRRALSESGHEEFIQTVRGVGYRF 225


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +    +   +G  +    S      L      D+  ++  L   G    
Sbjct: 5   LLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLML--PGLSGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  DVCRRLRERSNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDG 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +   T      P+R+  D     V+G    LP RE  +LE L+ + G+ + + Q+   
Sbjct: 123 GGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           I+G  D   +   ++ H+ +LR ++ +       + + R +GY  +
Sbjct: 183 IWG-GDYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGYKFE 227


>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      E    +  +   ++  ++           
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N               I +  + R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKIEESKSALEIGGIVIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|169826282|ref|YP_001696440.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           sphaericus C3-41]
 gi|168990770|gb|ACA38310.1| probable two-component response regulator; probable MrsR2 protein
           [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A + +        +G   +    S+            D+  ++  L     + 
Sbjct: 6   ILVVDDEADLANLLKVSLQKEGYKQIYTAGSIHDAWTSFQQTSPDIVLLDVML--PDGEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------- 112
            +L R IR  S VP++ +S        +     G DD + KP   +E+  RV        
Sbjct: 64  YDLCRRIREISHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRVG 123

Query: 113 -AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++    + GP ++ +D  +    G +  L  +E  ++   M N  + ++K 
Sbjct: 124 YQTHETTSGMAEKTIQVGPFQLNADETEVHKDGILLELTAKEIGLMACFMHNPHRILSKE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +F  ++G  D    +N V  HI +LR+K+  +      + + + LGY  
Sbjct: 184 TLFERVWGE-DFFGSDNTVMVHIRRLREKIEQDASKPIFITTVKGLGYKF 232


>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
 gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++       D G  +    +             D+  ++  L        
Sbjct: 4   ILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIML--PKMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK----PIHHREILARVAAIYR 117
            +  +IR  S++P+I IS   S +  L  F+  +DD + K    PI  ++I A +     
Sbjct: 62  TVCEMIRQESEIPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIRRYEN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +  D    +V  +   L ++E  IL+ L+ N+G+ +++    + +
Sbjct: 122 KGLEKKEELHYKEMTLMVDNYRVKVGKKDINLTQKEYEILKELLENQGRVISRDSFLNRL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  ++   EE  V++HI  LRKKL +      +++ R +GY ++ 
Sbjct: 182 W-RYEYVGEERAVDNHIKNLRKKLGDAGN--YIETVRGVGYRVEK 223


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS------SAREDVSAIEAFLIG 55
            +L++D   +++        +G  +      +    +             +  I   ++ 
Sbjct: 4   ILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIML 63

Query: 56  KGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            G   ++L R I R  S VP++ +S   +    +   + G DD + KP   RE++AR  A
Sbjct: 64  PGINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCRA 123

Query: 115 IYRRLKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + RR +++N   +        I +  D     V+ E   L  +E RILE  M+   +   
Sbjct: 124 LLRRQRLNNTDPQGTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVWP 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + QI   I+G  D   +   V+ HI  LR+K+  +    D + + R  GY  
Sbjct: 184 REQILEKIWG-PDYIGDSKTVDVHIRWLREKIELDPSNPDYLVTIRGFGYRF 234


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G   +  ++ E    L  +    +  ++  L   G    
Sbjct: 4   ILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R    +P++ ++        +  FD G DD + KP +  E++ARV A   R   
Sbjct: 62  QLCREMREFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +R             + +D R     GE      +E  +L +L +N  +  +K  +F 
Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V  HI K+R+K+  +    + +++   +GY  
Sbjct: 182 RIWG-YDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRF 226


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+   ++ E    L  +   D+  ++  L   G   +
Sbjct: 6   ILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLML--PGIDGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
           E+ + IR        P+I ++        +   + G DD + KP   RE++AR+      
Sbjct: 64  EVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +  V   +     + + ++  +  ++ +   L  +E  ++  L  NRGK +++  + 
Sbjct: 124 SEEKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   E   V+ HI  LRKK+ +    + +++ R +GY +
Sbjct: 184 DEVWG-YDYFGETRTVDVHIRHLRKKIGDDQSGEYIETIRGVGYKM 228


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++  G       D   ++     E       + + D+  ++  L       L 
Sbjct: 15  LVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIML--PKLDGLS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP+I ++        +   D G DD + KP +        + + R  +  
Sbjct: 73  VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +  +N  + G +++  D R   +  +   L  +E  +LE L  N GK  ++  +  A
Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++G  D   +   V+ H+ +LR+K+  N      V +K  +GY  + 
Sbjct: 193 VWGQ-DYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238


>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 234

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 88/229 (38%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +  E    +    + D+  ++  L       +
Sbjct: 4   ILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWML--PRMDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R IR  S VP++ ++        +   + G DD + KP    E+ ARV         
Sbjct: 62  EVCRKIRETSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRRAAF 121

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I++  + R+ +++ ++  L  +E  +LE  ++  G+  ++  
Sbjct: 122 GRERSEFASEGGVLSFPFIQLDREKREVKLEDQLLVLTPKEYELLELFLSYPGRVFSRAY 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+   D    +  V++ IS+LRKK         +++    GY  +
Sbjct: 182 LMDRIW-EADYLENDRTVDTQISRLRKKFGLYG--KAIETVWGTGYKFN 227


>gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 228

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 86/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E       S   ++  ++  L   G   L
Sbjct: 6   ILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLML--PGVDGL 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++     S VP+I +S        +   + G  D V KP   R ++AR+ A+ RR
Sbjct: 64  EVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLIARLRAVLRR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                       QG+   L   E R+L  L    G    ++QI 
Sbjct: 124 RSAEPLSESAPLTIHDLVIHPGRHEVLIQGQQVDLTVTEFRLLHMLARRPGWVFTRSQIV 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G  D  V +  V+  +  LRKKL      D +++ R +GY  
Sbjct: 184 NTVHG-DDYPVSDRSVDVQVVGLRKKLGALG--DYIETVRGVGYRF 226


>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 233

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V        G +G  +      +    L       +  ++  L       +
Sbjct: 8   ILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWML--PVYDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S        D G+DD + KP    E+         R+  
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +    GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 TQEQNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R KL        + + R LGY +
Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKLGEPY-KKLIKTVRGLGYCL 229


>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 234

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   N+      +       +  ++  L   G    
Sbjct: 6   ILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLML--PGLDGF 63

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +   +    + +I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  DVCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 119 LKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +           ++  D  +  +  +   L  +E  +L+ L+ N+GK + +  + 
Sbjct: 124 TYPGADIENNSYESKGLKIDFDRHEVFINNQKVELTLKEFDLLKILIKNKGKILQRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 21  ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 79  EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +   + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 139 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 199 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 234

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 12/233 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +        +    +  +       L    + D+  ++  L    G +V
Sbjct: 3   ILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
               R    +    ++ ++        +    +G DD + KP    E           + 
Sbjct: 63  CTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 +             R  +  +      E   L   E  +L   M+  G+  +++
Sbjct: 123 RHGGQPKNVYQTAHFIVDLDRHIATRKLDNESEETLELTTLEFSLLSTFMSYPGRVWSRS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           Q+   ++G  D   +E VV++HI +LRKK+         + +   +GY  + N
Sbjct: 183 QLIEKLWG-DDFFGDERVVDTHIRRLRKKIEPDTANPTFIKTVVGIGYKFEDN 234


>gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +   N+ E    +    +  +  ++      G   L
Sbjct: 7   ILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIM--MPGMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ + IR  + +P+I +S   +    +    +G DD V KP +                +
Sbjct: 65  QMCKKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRRYTQ 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       +   N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 125 LNPNSAVNEAVKNEIAIRGLTINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 185 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E  +       + +S R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
           E+ R +R+     P++ ++   S+   +   D+G DD + KP            L R   
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +    R+         L R E  +LE L+AN  + + +++I 
Sbjct: 123 PEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EEVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V++G        G  +    + E    L  S R D   ++  L   G   LE
Sbjct: 5   LIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLML--PGMPGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IRAH QVP+I  +        +   ++G DD V KP+  R + AR+ A+ RR    
Sbjct: 63  VCRRIRAHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGGA 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G + +   G     QG    L   E R+L  L A+ G+  ++ Q+  A
Sbjct: 123 PDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++   +   +  +V++ + +LR K+    G    V + R  GY  
Sbjct: 183 VW-EHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGYRF 226


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 244

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++             D+  ++  L G     L
Sbjct: 7   ILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGD-IDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVA 113
           E+ R IRA  + +P++ ++    +   +   D+G DD + KP    E+       L R  
Sbjct: 66  EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +       + + +  R          L  RE  +L   M +  + + +  I
Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   E NV+E ++S LR+ L        + + R  GY++
Sbjct: 186 MERVWG-YDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYAL 231


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEVSDGVLESGPVRMDVERHVVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
 gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 229

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L G +G      ++      +      D+  ++  L   G   +
Sbjct: 4   ILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVML--PGMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR          
Sbjct: 62  EVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  + GP+R+  D     V GE   +P +E  +LE L+ N G+ + + Q+   
Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ HI +LR K+  +      V + R LGY  +
Sbjct: 182 VWGA-DYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 226


>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
 gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 233

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
 gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    S E    L    R D+  ++  L   G    
Sbjct: 10  LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 68  EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++ A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 128 ESSDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 228


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++    +             D+  ++  L        
Sbjct: 7   ILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVML--PDMNGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
            + + +RA     P++ ++     +  +     G DD V KP          +       
Sbjct: 65  GVTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +  D  +  V  E   L   E ++L YLM N  + ++K QI   ++
Sbjct: 125 HADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+KL        + +KR  GY +
Sbjct: 185 -EYDFNGDAGIVESYISYLRRKLDQHSSEPVIQTKRGFGYML 225


>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 224

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G S+   +  E    +  +   D++ ++           
Sbjct: 5   ILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIM--MPVMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   ++    +P+I ++        L  F  G+DD V KP    E+LARV  I +R  +
Sbjct: 63  QLVEEMKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSI 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++    +   +    D  +     E   LP ++  +   L  N  +   + Q+   I+G+
Sbjct: 123 NSQNIVQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+ HI ++R+ L +  GF  V + R LGY I+ 
Sbjct: 183 -DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKIEV 222


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G  ++          L SS   DV  ++  L  K     
Sbjct: 10  ILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIK--NGF 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+   +RA     P++ ++   S+   +   ++G DD + KP   +E+LARV A + R  
Sbjct: 68  EVCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPR 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       + + +     +   +   L  +E R+LE+L  N  + +++TQI  +++ 
Sbjct: 128 ESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWD 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NVV+ +I  LRKK+ +      +++ R  GY +
Sbjct: 188 Q-DFFSDSNVVDVYIRYLRKKIDDPFPTKLINTVRGFGYKL 227


>gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 266

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  ++     +      ++   D+  ++      G+   
Sbjct: 35  LLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIM--MPGDDGF 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S +P+I ++        +   + G DD V KP + RE+LAR+ A+ RR + 
Sbjct: 93  TLCKEVRTKSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRYEE 152

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +                   ++            L   +  +L+  ++  G+ +++  + 
Sbjct: 153 TAVVPKVAEIIRFGDFSLHLTNRELQYQDNPPEALNGADFNLLKLFLSRPGEVLSRDDLS 212

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             + G  D +  +  ++  IS+LR KLR+       + + R  GY +
Sbjct: 213 HHLRGR-DASPFDRSIDVQISRLRSKLRDDGKSPQLIKTVRGAGYIL 258


>gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 228

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S + A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESTDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225


>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ H+++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 223


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G      ++           + D+  ++  L       +
Sbjct: 5   ILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIML--PEMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++ + IRA  SQ P+I ++    ++  +   D G +D V KP    E    +       +
Sbjct: 63  DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQ 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         G + +    R+     +   L  RE  +L YL+ +  + + + QI  A+
Sbjct: 123 KVSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  +R+KL        + + R +GY +
Sbjct: 183 WG-YDYYGDTNVVDVYIRYVRQKLEAANPTPLIQTIRGVGYVL 224


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    +  ++G  +   ++             D+  ++  L   G    E
Sbjct: 5   LVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCRQIRAKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAAS 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 DEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+    G    + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGTPVHLVTVRGLGYKFE 225


>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 223

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                T    GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGYKFE 222


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 21  ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 79  EVAKSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 139 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 199 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G +++     +  E     +  D+  ++  L   G   +
Sbjct: 5   ILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWML--PGLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +R   +    P+I ++        +    +G DD V KP    E+LARV A    
Sbjct: 63  ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +        G I +  +       G    L   E R+LE+LM + G+  ++ Q+   
Sbjct: 123 AKPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS + 
Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKAINRGRQPDPIRTVRGAGYSFNE 227


>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 259

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++           
Sbjct: 22  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVM--MPKLDGY 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------- 114
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+         
Sbjct: 80  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEK 139

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 140 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 199

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 200 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 247


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++               +  D+  ++  L   G   L
Sbjct: 5   ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWML--PGISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P+I ++    +   +   D+G DD + KP    E+LARV A  RR +
Sbjct: 63  EICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N           +       +      L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 123 EENPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL        + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEENGEKRLIQTIRGVGYVL 222


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  +   D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV AI RR + 
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +  E+            ++  D    +  GE   L  RE  +L +L ++ G+ + +  
Sbjct: 122 AVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 247

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 30  ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         
Sbjct: 88  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 208 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 246


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 227

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++        D+G ++    S E    L      DV  ++  L   G   L 
Sbjct: 6   LMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLML--PGVDGLH 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + R++R+   +P+I ++     +  +   ++G DD V KP+    + AR+ A        
Sbjct: 64  VCRVLRSRGDLPVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + V  D R     GE   L R E R+L  L+A  G+ V + Q+ + ++G 
Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +D   +  +++ HI +LR+K+         V + R  GY I
Sbjct: 183 YDYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGYRI 223


>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 221

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 235

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E     +    +  +   D+  ++  L        
Sbjct: 6   ILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLML--PKLDGW 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R      ++P+I ++     +  +   + G DD + KP    E+LARV A  R 
Sbjct: 64  EVCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRA 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   E   +   +           G    L   E R+LE L+  +G+ V++ ++ +
Sbjct: 124 RAQDALGDEGIAVGPLTLEPRSGEVLLDGTPLDLSPVEYRLLETLVRGKGRLVSREELLA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            ++G    A +   V+ HI +LR+K+         V + R  GY + W
Sbjct: 184 KVWGY--VAGDTRTVDVHIFRLRRKIEPDPEHPRLVHTVRGRGYRLLW 229


>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 233

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++      E           D+  ++           
Sbjct: 14  ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVM--MPKLDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
            + + +R  S VP++ ++    +   +   + G DD V KP             +     
Sbjct: 72  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 131

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++   +   +++ ++ R     GE   L   E  +LE L++  G+  ++ +I
Sbjct: 132 EHGGGSIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEI 191

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 192 LKDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 240


>gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 233

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G S+      +    +  +   D+  ++           
Sbjct: 6   ILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
           E+ R IR    +P+I +S   S    +     G DD + KP            +      
Sbjct: 64  EVTRRIRETHNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLRRFMK 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               R       R +   + +  + R   + GE   L  +E  IL  L ++  K  +   
Sbjct: 124 LNQPRTAVDPKTRLDYRGLVISLEQRTVTLYGENIELTPKEFDILYLLASHPKKVFSVEN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           IF  ++G        N V  HI  LRKKL      D  + +   +GY+ +
Sbjct: 184 IFKQVWGEAYFEG-ANTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYAFN 232


>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E       + + D+  ++  L   G    
Sbjct: 4   ILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICREVRQKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N+  E   +++ +  R   V GE      +E  +L +L  +      K ++F
Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRF 227


>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ + D+  ++          L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDI--QMPRMDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R IR A +  P++ ++   ++   +   D+G DD + KP    E+            
Sbjct: 71  TAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A        ++    G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 131 YAATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQ 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 237


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L   +G  +                  D+  ++  L   G    
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKRLRKVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121

Query: 122 SNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             +R+  +     V GE   +P +E  +LEYLM N G+ + + Q
Sbjct: 122 PQVADYEEEGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 LIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSSPKHLVTVRGLGYKFE 230


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++      E         + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIML--PKRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                      D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLETVWG-YDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYL 230


>gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01]
 gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222]
 gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
 gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01]
 gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222]
 gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
          Length = 229

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 225


>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
 gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E     +  +     +  D+  ++  L   G   +E
Sbjct: 5   LIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWML--PGLSGIE 62

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R IR     + +P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 63  LCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                     +G I +  +        +   L   E R+LE+LM + G+  ++ Q+   +
Sbjct: 123 SPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLDGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKALNRGKAKDPIRTVRGAGYAFN 225


>gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
 gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
          Length = 243

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++     +   +G       S +    L  + + D+  ++  + G  +   +
Sbjct: 17  LIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNG-VDDGFD 75

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA     P++ +S       TL   D G DD + KP +   + A++ A+ RR K 
Sbjct: 76  AIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNKK 135

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A       P R  +   +     ++ PL  +E  +++  ++N G+   K Q++  +
Sbjct: 136 AAYNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYELV 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +G  +  V+EN +  +IS LR K+ +       + +   LGY    N
Sbjct: 196 WG--NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTVN 240


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N           A  D+  ++  L   G    +
Sbjct: 5   LIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A         P+R+  D     V GE   LP +E  +LEYL+ N G+ + + Q+   
Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
 gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
          Length = 224

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G    GF          +    ++  ++  L G  G +
Sbjct: 1   MIFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGME 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
           +L   +  +    +P+I ++   +    +   D+G DD V KP    E+++R+       
Sbjct: 61  LLRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    S +  E G IR+     +  V GEV  L  +E  +L+ LM N    + + Q+  
Sbjct: 121 AKGSVSSEDTFEIGEIRLDPKKHEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL +      +++ R +GY +
Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGDAGEQ--IETVRGVGYRM 222


>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 234

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +        +G  +   +S E       +   D+  ++  L G  G +V
Sbjct: 6   ILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGIDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +     S +P+I ++        +   + G DD V KP   R I+ARV A+ RR  
Sbjct: 66  ARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMRRNA 125

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +                 R+  V G+   L   E  IL YL    G    ++QI SA
Sbjct: 126 AEPDDGIQAREVHGIGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQIVSA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G    AV +  V+  I  LRKKL        +++ R +GY +
Sbjct: 186 VRGEG-FAVTDRSVDVQIVGLRKKLGASG--KVIETVRGVGYRL 226


>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
           HTCC2999]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++    +    G ++      +           D+  ++  L   G   +
Sbjct: 5   ILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWML--PGGSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R  + H    ++P+I ++        +   D+G DD + KP   +E+    +     
Sbjct: 63  QLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +          G    +   E ++L + M++  +  ++ Q+   
Sbjct: 123 VTPTAKEEPIHFSGLVLDPISHRVTANGVSIEMGPTEFKLLHFFMSHAERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L ++     + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALESQGYDAMIQTVRGAGYRF 225


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +    +   +   +    + +    +      D+  ++  L    E   
Sbjct: 4   ILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVML--PDESGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + I    +VP+I ++    +   +   + G DD V KP   RE++ARV         
Sbjct: 62  DILKKIVPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +K + N    G + V  D    + +G++  L  +E  +L+ L+  +G  + + ++   ++
Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G +D   +  VV+ HI +LRKK+ +       + +    GY  D
Sbjct: 182 G-YDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGYKFD 224


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +      E    +    + D++ I   ++       
Sbjct: 6   ILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQK-DIALILLDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ + IR +SQVP++ ++     Q  L  F  GVD+ ++KP   + ++ARV AI  R   
Sbjct: 65  EVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSSP 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  + G I +       E+ G+   L  +E  ++ Y   N+G  +++ +I + ++  
Sbjct: 125 GAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNNVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR KL  K   + + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEV 223


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L   +G  +           +      D+  ++  L   G    
Sbjct: 4   ILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLML--PGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
           E+ R IRA S VP+I ++   +    +   + G DD V KP   RE              
Sbjct: 62  EVCRAIRAKSMVPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  + S+N  E G +RV  D     V+GE   LP +E  +LE L+ N G+ + + Q+   
Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+       + + + R LGY  +
Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGYKFN 226


>gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
 gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
          Length = 244

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD ALV +       + G  ++             +   D+  ++  L   G   LE
Sbjct: 5   LVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLML--PGLDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R + A   VP+I ++        +   + G DD V KP   RE+  RV ++ RR   +
Sbjct: 63  VFRRLTARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVLRRAAEA 122

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               E G +R     V    R          L  RE  +L +L+   G    + ++   +
Sbjct: 123 AAAPEPGVLRAGALVVDPAARTATRHEVPLGLTVREFDLLAFLLRRPGHAFTRVELLEQV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G      + + V  HI +LR+K+ +       + +   +GY  D
Sbjct: 183 WGW--SYGDPSTVTVHIRRLREKIEDDPTAPRLLVTVWGVGYRYD 225


>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
 gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
          Length = 229

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        DG  +    + E    +      D+  ++  +    G +V 
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          I + ++            L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 STVGVRLEFDDIVLDAETHKVSRADTQLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
 gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 17/235 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +   +           +    + D+  ++      G     
Sbjct: 8   LLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVM--MPGLDGWT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR  S+VP++ ++        +  F+ G DD V KP   RE++ RV A+ RR   +
Sbjct: 66  TCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSST 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVAK 170
             + +         G                       L   E  +L YL  N G+ +++
Sbjct: 126 PPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
             +   ++G ++ A +   V++H+ +LR+KL   +      V + R  GY  + N
Sbjct: 186 DLLLDRVWG-YEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +      +   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLSINGLDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLITTVRGMGYRL 218


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +     G  +   N+             D+  ++           
Sbjct: 7   ILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIM--MPDMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  SQ+P++ ++     +  +   + G DD + KP   RE    +       R 
Sbjct: 65  EVCQRIRQTSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +  +R + G + +  DGR   +  E   L RRE  +L +L+ N+G+  ++ Q++  ++
Sbjct: 125 LSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                +     V++HI  LR KL  K     + +   +GY  + 
Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKL--KGAERHIKTVWGVGYKFEE 226


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F ++G  +   +  +    L +    D+  ++  + G  G +V
Sbjct: 16  LLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIEV 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  +A + VP+I ++   +    +   ++G DD + KP   RE+LARVAA+ RR++
Sbjct: 76  CRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRRIR 135

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +         +G+   L   E R+L++ M + G+  ++ Q+   ++
Sbjct: 136 PVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDGVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  +  +E   V+ HI +LRK +  +   DPV + R  GYS++
Sbjct: 196 GT-ESDIELRTVDVHIRRLRKAIEIEGAKDPVRTVRSAGYSLE 237


>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +          +  +   D+  ++          L
Sbjct: 11  ILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDI--QMPRMDGL 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128

Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + + A               R+    R+         L R E  +LE  +++  + + +
Sbjct: 129 YAASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 189 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 237


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLML--PGMGGND 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE+ AR+ A+ RR + +
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEA 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           PI++  D     V  +   LP +E  +LEYLM NRG+ + + Q+   
Sbjct: 123 DSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ +     D + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKLE 227


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G      N+             DV  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRSRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGDV 122

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               E+    GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 G-SDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKLE 225


>gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
 gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++           S+   +S E    L      D+  ++  L    G   
Sbjct: 4   ILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSGIDF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               +    +  VP+I ++     +  +   + G DD V KP   RE+    +       
Sbjct: 64  ARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLRRAA 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R E   + +        +  +   +   E R+L + M +  +  ++ Q+   ++
Sbjct: 124 PLSGDERIEVKGLTLDPVAHRVWIGEDTLEIGPTEFRLLRFFMTHPERVFSRGQLLDHVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK +  +     + + R  GY  
Sbjct: 184 GT-NVYVEERTVDVHIRRLRKTIAGRGHDRLIQTVRGTGYRF 224


>gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G  ++  +S      L  +    +  ++  L   G    
Sbjct: 5   ILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQL--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL   IR   +VP++ +S        +  F+ G DD + KP             +     
Sbjct: 63  ELCSQIRQVKEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTRYER 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R+ + SN       + +    R   V+ +      RE  +LE+L  +  +   K ++
Sbjct: 123 LTARQAEPSNAEIHIRGLVIDKVSRRVYVRNQEVIFTTREFNLLEFLATHPNRVFNKNEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G+ D + +   V  HI KLR+K+  +      +++    GY  
Sbjct: 183 FERIWGM-DSSGDIATVTVHIRKLREKIEVDPSNPQYIETVWGAGYRF 229


>gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1]
 gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+         +G  + G           ++   D   ++          L
Sbjct: 21  ILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVM--MPVLDGL 78

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            + R +RA     P++ ++   S+   +D  ++G DD + KP    E++ARV        
Sbjct: 79  GVCRQLRAMGDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 138

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +    R            R E  +LE L+ + G+ + +  I   +
Sbjct: 139 PAPGGAAALGFADLVLDPATRTGRRGSRPLEFSRTEAALLELLVRHAGQVLPRELILELV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D   + N +  +I  LR+KL        V +   +GY +D
Sbjct: 199 WGQ-DFGPDSNSLAVYIGYLRRKLEAGGEPRLVHTVHGVGYRLD 241


>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 225

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        +   S     + E    +  + + DV  I+            
Sbjct: 7   LIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVM--MPKMDGFT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S VP++ ++        +     G DD + KP    E++AR+ AI RR   +
Sbjct: 65  LCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124

Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + E            GR   V G+   L  +E  +L +L  + G+  ++  + + ++G
Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LR KL+     D + +   +GY  + 
Sbjct: 185 -YDYTGNARTVDTHIKTLRMKLKQAS--DFIQTVWGIGYKFEV 224


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  +   D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV AI RR + 
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +  E             ++  D    +  GE   L  RE  +L +L ++ G+ + +  
Sbjct: 122 AVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++      E         R D+  ++  L   G   L
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWML--PGISGL 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   +    P++ +S       T+   D+G DD + KP     + ARV A+ RR
Sbjct: 64  EVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  ++       + +       E  G +  L   E R+LE+ M N GK  ++ ++    +
Sbjct: 124 LPPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 184 -ERSSFVELRTVDVHIRRLRQTLNEGDEQDIIRTVRARGYALD 225


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   + E    L +  + ++  ++          +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLM--MPKVDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V G+   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGYKF 230


>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  S++ D+  ++  L   G   +
Sbjct: 5   ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLML--PGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S  P++ ++        +   +SG DD V KP    E++ARV A  R    
Sbjct: 63  EVCRQIRAESDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +   G       E   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 KAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 221


>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 219

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD + ++        + G       + +    +  +   D   ++          +E
Sbjct: 2   LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIM--MPEMNGIE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRL 119
           + + IR  S VP+I ++        ++    G DD + KP         +  V   Y + 
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G IR+    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G
Sbjct: 120 EEQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D A     V++H+  +R KL        + +   +GY  + 
Sbjct: 180 -YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 219


>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
 gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
          Length = 232

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D        +G  +   N+ E       +   D+  ++  +       L
Sbjct: 7   ILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMI--PKLNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ ++IR  + +P+I +S   S          G DD + KP          + ++ R   
Sbjct: 65  EVLKVIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +    GP+++          G    L  +E  IL+  + NR +   K QI+
Sbjct: 125 YAGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             I+       +EN++  HI +LR+K+ +       + +   +GY  +
Sbjct: 185 QLIW-KDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 231


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E       S + D+  ++  L       LE
Sbjct: 6   LVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLML--PKIDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 64  VAKRVRAKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAA 123

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N                    D      +G+   L  RE  +L YL  + G+ + + Q+ 
Sbjct: 124 NTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYL 229


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       L +S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       +   + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 223


>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +           G  +      +    L    + D+  ++  L    G  V
Sbjct: 6   LLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGMSGLDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + +    + P+I ++        +   + G DD V KP   RE++ R+ A+ +R  
Sbjct: 66  CKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKRGA 125

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + E    RV      ++    E+ G+   L   E ++L  L+ NRG+   + Q+ +
Sbjct: 126 PFTEQEERTRWRVNGLSLDTEAHRVEIDGDEVTLTATEFKLLFELVRNRGRVRTRDQLLN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++       V++H+ +LR+K+ +  G   +++ R +GY  
Sbjct: 186 TVWG-YEFEGYARTVDTHVRRLRQKIGDYAG--YIETIRGVGYRF 227


>gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
 gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
          Length = 239

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +          A   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGSEVVGAVRQAPPSIILLDLML--PGTDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGKKPFIRAVYGMGYRWE 232


>gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
 gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          A   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWITNGAEVVAAVRQAPPAMILLDLML--PGSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 243

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +   D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+         RV  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGGNGIPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233


>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 233

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 239

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +   G  G ++      +  +    S   D+  ++  L        
Sbjct: 6   ILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQSFSPDLVILDINL--PDTLGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   ++      ++ ++        +  F  G DD + KP    E+  RV AI RR + 
Sbjct: 64  ALCEQMQESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRRQRS 123

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            +        V+GE   L   E  +L +L  N  K   ++++  
Sbjct: 124 PVAPPARDQSLDFADLNIDPMRHVVAVKGEPVNLTALEFNLLHFLAKNANKVWRRSELIQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           A++G +D   ++ VV+ HI ++R+KL N +  + P+ + R +GY  +
Sbjct: 184 AVWG-YDYLGDQRVVDVHIGQIRRKLDNLMQQENPIKTVRGVGYMFE 229


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRTRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   AE      P+R+  +     V G +  LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGYKFE 225


>gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 246

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             S + ++  ++  L   G   LE
Sbjct: 22  LVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A              +    R   VQ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 TLAATAPRGATLRLGDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G D + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GADRIRTVHGVGYALE 241


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E    L  +   D+  ++  L    +  +
Sbjct: 6   ILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLML--PKKDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                  +    +  GE   L RRE  +  YL  +RG+ + +  
Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGY 229


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       + + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +               
Sbjct: 65  QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V       +      E   I +        V G    +P +E  +L +L ++  +   + 
Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHSTWGL-STVWGIGYKFEV 233


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L G +G  +E  ++             D+  ++  L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQL--PGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S VP+I ++   S    +   + G DD V KP   R     + A +     
Sbjct: 62  EVCRQLRQRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ ++  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGYKFE 225


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L    +  +
Sbjct: 5   ILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIML--PNKDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +  ++ 
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + ++N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGED 122

Query: 123 NNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                          P+R+  D     V G    LP +E  +LE L+ N G+ + + Q+ 
Sbjct: 123 GGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 DRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 229


>gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +    ++ F D+  ++                  D+  ++      G    
Sbjct: 6   ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIM--MPGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R  R  + +P+I +S        L     G DD V KP H RE++ARV +  RR + 
Sbjct: 64  EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   + +  +  +   +     L   E  +L+ L +   +  ++ Q+    
Sbjct: 124 EVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       E  +++HI  LRKKL  +      + +   +GY  
Sbjct: 184 MGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227


>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 237

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +    +   +  +++  +  +    +  +   ++  ++  L        E
Sbjct: 9   LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLML--PTLDGWE 66

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           + R +R   A    P+I ++        +     G DD + KP   RE LARV       
Sbjct: 67  ICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRT 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++      + ++       ++ +   L  +E  +L  L  N G+ + + Q+   
Sbjct: 127 TDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQ 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++G ++       ++ HI +LR+K+   + G+  V +   +GY ++ 
Sbjct: 187 VWG-YEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232


>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
 gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V++G        G  +    S E    +    R D+  ++  L   G    E
Sbjct: 5   LVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLML--PGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
             R +RA   VP+I ++        +   ++G DD V KP+  R + AR+       A+ 
Sbjct: 63  TCRRMRAAGPVPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRRAAVE 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    +      G + +     +   +GE   L   E ++L  L    G+  ++ QI SA
Sbjct: 123 RPDGPAAAEERHGDLVIDRAALEVTKRGEPVSLTPTELKLLLELSRTPGQVYSRQQILSA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   D   +  +V++ + +LR K+ +     + V + R  GY  
Sbjct: 183 VWD-HDYLGDSRLVDACVQRLRAKIEDVPAKPEHVQTVRGFGYRF 226


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 123 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 225


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         + G + +  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 122 IAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       DG   +     E       +   D+  ++  L       L
Sbjct: 5   ILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIML--PKINGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S VP+I ++        +   + G DD + KP +  E+ ARV AI+RR   
Sbjct: 63  EVCRQVREQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K ++   +   + +  + R   V G    L  +E  +LE L+  RGK  ++ Q+   
Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  +D   +   V+ HI +LR+KL  N    + + +K  +GY  
Sbjct: 183 VW-KYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGYYF 226


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR           
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+   E+GP+R+  +     V GEV  LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DAESSDGILESGPVRMDVERHVVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 224

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A    +G S+      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPL--LDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++        L  ++ G DD V KP   + + A+V  + +R++ 
Sbjct: 63  TVCTNIREKSEVPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKRIQP 122

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           ++ +   +  ++ +   L  +E  +L Y   N+G  + + +I   ++G
Sbjct: 123 NEKSKVQNFDGLKIDAISHEVTIEDKEIYLSPKEYDLLIYFSNNKGITLTRDKILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   +   V++H+ +LR+KL++K     V + R  GY  + 
Sbjct: 183 E-DYYGDLRTVDTHVKRLREKLQDKAY--LVATVRGSGYKFEV 222


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        +G  +    + +    L      D+  ++  L   G   +E
Sbjct: 9   LLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWML--PGVSGIE 66

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +   R  + +P+I +S        +   ++G DD + KP   +E++AR+    RR 
Sbjct: 67  ICRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRT 126

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + ++   +     I +  +       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPASVGQQLAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DVYVDTRTVDVHVGRLRKALCKTGGDDPLRTVRGTGYAL 228


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +  +    L  S   D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVML--PNMDGI 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRL+
Sbjct: 62  EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 E             +         V GE   L  +E  +L Y M  +G+ + + 
Sbjct: 122 PRQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + + I+  FD   +  +V+ HIS LR+KL  +    + + + R  GY  
Sbjct: 182 TLLNRIW-NFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKF 230


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +  G       D   +      E    L  S   D+  ++  L       L 
Sbjct: 12  LVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLML--PKIDGLS 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + R IR  S VP+I I+        +   + G DD + KP +        + + R  +  
Sbjct: 70  VCRQIREFSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSFN 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + S+     G +R+  DGR   +      L  +E  +LE L+ N  K   +  + + 
Sbjct: 130 LKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLNI 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           ++G ++   +   V+ HI +LR+K+ +       V +K  +GY
Sbjct: 190 VWG-YEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231


>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 248

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   +  +    L      D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236


>gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 240

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++  + +    G         E  +     A  D+  ++  L G  G + 
Sbjct: 6   ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               +    + ++P+I ++     +  +   + G DD + KP   +E+    R       
Sbjct: 66  ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   G + + ++     +  +   +   E R++++ M +  K   +TQ+   ++
Sbjct: 126 KINDLAQITLGDLVLDTEQHRLSIGDKQLEVSPTEFRLMQFFMTHPDKVFNRTQLLDQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ HI +LRK L      D V + R  GY  
Sbjct: 186 GRSVY-IEERTVDVHIRRLRKILGEHGREDLVQTVRGFGYRF 226


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +    +  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +               
Sbjct: 65  QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       +      E   I +        V GE   +P +E  +L +L A+  +   + 
Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHSDWSL-STVWGIGYKFEV 233


>gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 245

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +  +    N  E    +      D+  ++  L    G +V
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
               R         ++ ++        +    +G DD + KP   RE++ARV A+ RR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  ++         +      R    + E   L   E  +L   M+  G+   +TQ
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   ++G  D   +E VV++HI +LRKK+  +      + +   LGY  +
Sbjct: 194 LIEKLWGN-DFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242


>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
 gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +      E    +    + D++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQK-DIALLVLDIMMPRINGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R IR  S+VP+I ++     +  L+ FD G D+ ++KP   + ++ARV        +
Sbjct: 65  EVCREIRQTSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRANK 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L      +E G I +        + G    L  +E  +L+Y M+N+G  + + +I  +++
Sbjct: 125 LGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDSVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   +   +++H+ KLR K+  K   D + +   +GY  +
Sbjct: 185 S-YDYFGDARTIDTHVKKLRSKMGAKG--DYIKTVWGVGYKFE 224


>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 233

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADA 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           P+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDLGVADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E    L  S   D+  ++  L    +  +
Sbjct: 6   ILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLML--PKKDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                  +    +  GE   L RRE  +  YL  +RG+ + +  
Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGY 229


>gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++I+D   + +         G  +    + +         + D+  ++  L    G ++ 
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ +       +P+I ++        +   + G DD + KP   R     I A +    +
Sbjct: 66  KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G I + +       +G+V  L  +E  +L+ L  N GK + +  +   +
Sbjct: 126 PEEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++ A E   V+ HI  LRKK+  +      +++ R +GY +
Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKL 228


>gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 227

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G + E                     ++  L   G    
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLML--PGLDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   +    P+I ++        +   + G DD V KP   RE++ R+ A+ +R
Sbjct: 64  EVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123

Query: 119 LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +        V        + GE   L   E R+L  L  + G+ + + ++ +
Sbjct: 124 HAPETEKRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G ++       V++H+ +LR+KL        +++ R +GY  
Sbjct: 184 SVWG-YEFEGYARTVDTHVRRLRQKLGACS--RMIETVRGVGYRF 225


>gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 236

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 81/232 (34%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G              +      D+  ++  +   G   L
Sbjct: 3   ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMI--PGLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110
           E+   IR         ++ ++        +    +G DD + KP   RE        +  
Sbjct: 61  EVCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +    +              +  +  +    Q EV  L   E  +L   ++N G+   +
Sbjct: 121 SLRQGGQNQVNRTQHFIVDVDQRTASRQMNSQQPEVLDLTTLEFNLLTTFVSNPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           TQ+   ++G  +   +E VV++H+++LRKK+         + +   +GY  +
Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDSASPTFIKTVVGVGYKFE 231


>gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +R+               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLRLDPVSHRVTANDTALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEFAGHDKLIQTVRGAGYRF 225


>gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  +    +             D+  ++  L        
Sbjct: 7   ILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGL--PDLSGA 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++    + T ++  ++G DD + KP H  E+      +  R + 
Sbjct: 65  EIARRVRKTSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEEL-LARIRVQLRHQN 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +    G + +  + R      +   L  RE  +L YL  + G+   + +I   ++G  
Sbjct: 124 AGSAQTVGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ HI+ +R KLR+  G+  + + R +GY+I
Sbjct: 183 ELPPSSNVVDVHIANIRAKLRDAGGYGLIRTVRGIGYAI 221


>gi|302382397|ref|YP_003818220.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302193025|gb|ADL00597.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 239

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G    G  S    +   +S   D+  ++      GE  L
Sbjct: 8   ILVVDDDPGIREVLCEYLGQHGYEARGAASAAEMDRALASGPTDLIVLDLM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +      P++ +S        +   + G DD + KP + RE+LAR+ A+ RR + 
Sbjct: 66  SVVRRL--SGTPPVVMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARIRAVLRRPRD 123

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  AE                     GE   L   E  +L   +   G+ + + Q+  A
Sbjct: 124 DDTPAEAALTFDGWTLDLVRRELKRSNGEPVQLSAGEFGLLRAFVERPGRVLTRDQLLEA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             G  +  V +  ++  IS+LRKKL +  G D + + R  GY  D
Sbjct: 184 ARGT-EADVFDRAMDVQISRLRKKLDDGSGRDLITTIRGEGYRFD 227


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+        + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 218


>gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 237

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++          G  +   ++ E    L      D+  ++  L    G ++
Sbjct: 12  ILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQI 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R    H  +P+I ++            D G DD + KP   + +++RV +  RR +
Sbjct: 72  CKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRRSR 131

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   +          I +        VQ +   L   E  ILE L    G   ++ QI
Sbjct: 132 ELDQDEDGGVLRLTEAGIVIDPRRHQVLVQDKPVSLTISEFSILELLARRPGWVFSRQQI 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + G +D A+    V+  +  LRKKL        +++ R +GY +
Sbjct: 192 IDTVRG-YDYAITPRAVDVQVFGLRKKLGQAGA--CIETVRGVGYRL 235


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +   +S      +  + + D+  ++      G     
Sbjct: 14  LVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVM--MPGMDGFT 71

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R      P++ ++   +++  +     G DD V KP    E++ARV AI RR   
Sbjct: 72  LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSGQ 131

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +       D       G    L   E ++L YLM N  K V+K QI   ++
Sbjct: 132 GTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE++IS LRKKL +  G   + + R +GYS+
Sbjct: 192 -QYDFGGDANIVETYISYLRKKL-DGYGPPMIKTVRGVGYSL 231


>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
 gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
          Length = 241

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++++D   +++        +G  ++   S          +        +   L+  G  
Sbjct: 14  LLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGVS 73

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L++ R +R      P+I +S   S    +   + G DD + KP   RE++AR  A+ RR
Sbjct: 74  GLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLRR 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + +      +R       PE        +   L  +E R+LE  M +  +  ++ ++
Sbjct: 134 SARNGDSGAKEVLRFDEITLYPEECRVTRGGQEVNLSPKEYRLLEVFMQSPKRVWSRDKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G+ D   +   V+ HI  LR+KL  N      + + R  GY  
Sbjct: 194 LERVWGI-DFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGYRF 240


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           +      D+  ++           
Sbjct: 4   ILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIM--MPDTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P+I +S   +    L  F+ GVDD V KP   RE++AR+ A+  R K 
Sbjct: 62  TACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKT 121

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +         G + + + G    V G    L  +E  +L + + NRG  + + QI + 
Sbjct: 122 DVSENDSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D    +  V+  I  LR KL      D + + R +GY  + 
Sbjct: 182 VWG-YDSFGVDRTVDWQIKLLRSKLG--SCRDCIKTVRGVGYKFEV 224


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +          A  D+  ++  L  K     E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEK--SGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD + KP   RE++AR+ A+ RR    
Sbjct: 63  VCRELRTTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAEP 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   T     P+R+  D     V G   PLP +E  +LE  + N G+ + + Q+   ++
Sbjct: 123 TDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGYKFE 225


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++          + S+   D+  ++  L        
Sbjct: 4   ILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLML--PVIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I ++   +++  +   ++G DD + KP    E+LAR+ A  RR + 
Sbjct: 62  EVARRIRAASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQT 121

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++       + + +  R+  V      L  +E  +LE  M +  + + +  I+  ++ 
Sbjct: 122 YQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E ++  LR+KL        + + R +GY +
Sbjct: 181 NYDFGGESNIIEVYVRYLRQKLEANGEPRLIHTVRSVGYIL 221


>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
          Length = 233

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V        G +G  +      +    L       +  ++  L       +
Sbjct: 8   ILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWML--PVYDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S        D G+DD + KP    E+         R+  
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +    GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 TQEQNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R KL        + + R LGY +
Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKLGEPY-KKLIKTVRGLGYCL 229


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G  +    + +      ++ R D+  ++  L        
Sbjct: 17  LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVML--PDLDGF 74

Query: 62  ELPRIIRAHSQV-------PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            + R +R  +Q        P++ ++        +     G DD V KP    E++AR+ A
Sbjct: 75  TVVRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRA 134

Query: 115 IYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           I RR     +        + +     +    G    L   E ++L YLMAN G+ V+K Q
Sbjct: 135 ILRRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQ 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
           I   ++  +D   + ++VES+IS LR+KL +    G   + + R +GY++
Sbjct: 195 ILDHVW-AYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYAL 243


>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 241

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++   ++ +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE            + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 SKPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEV 233


>gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +     S+ +   +  S   D++ ++  L        
Sbjct: 4   ILLVEDDENLANGISYALTQEGWATTLAGSVSYALEMLESGDFDLALLDVML--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S++P+I ++        +   +SG DD V KP   RE+++R+ A  RR++ 
Sbjct: 62  ELCKKIRERSEMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQK 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +       ++GP+ + +        G+   L   E +IL  LM N G  + + ++   +
Sbjct: 122 RSVEEGGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           + +  E +++N +  HI KLR+K+  +      +++ R LGY   WN
Sbjct: 182 WDVDGEFIDDNTLSVHIRKLREKVEEDPSKPKLIETLRGLGYR--WN 226


>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            +S R D+  ++          L
Sbjct: 15  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDI--QMPRMDGL 72

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A    P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   A +             +    R+    G    L R E  +LE  MA+  + + + 
Sbjct: 133 YAAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240


>gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
 gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
          Length = 231

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRAIRTESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++         +    +       GE   L   E  +L  +    G+   +  +  +++
Sbjct: 123 ASSGELIEVGDLVIDVPEHTVTRAGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           G +  A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 G-YRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 223


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++          + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|296393679|ref|YP_003658563.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180826|gb|ADG97732.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++    +           R D   ++      G   L
Sbjct: 3   ILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVM--MPGLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                           +    RD         L R E  +LE LM N  + + +T++   
Sbjct: 121 PQAEPGAETLAFLDLSLDPATRDVRRGDREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEADGENRLIHTVRGVGYVL 223


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++        +G  +           L    +  +  ++          L
Sbjct: 3   ILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVM--MPQMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV +++RR  
Sbjct: 61  EVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRSI 120

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   E      F       D RD    G+   L R E  +LEYLM N  K ++++ I 
Sbjct: 121 TESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSDIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++     N +E +I  LRKK         + + R +GY +
Sbjct: 181 EEVWG-YNFPTSGNALEVYIGYLRKKTEANGESRLIHTVRGVGYVL 225


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G ++   ++      +    +E +S +   ++       
Sbjct: 6   ILIADDEERMRRLVADFLKKQGYAVIEADNGMKALQIIIEQKETISLVILDVMMPIMDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           E  R IR +S+VP+I ++   +    L  F  G D+ + KP      +    A + R   
Sbjct: 66  EALRSIRQYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKRLNI 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N +     + +        V G+   L  +E  +L YL  N G  +++ +I ++++  
Sbjct: 126 NINGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSVWD- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +    +   V++HI KLR KL  K   D + + R LGY  + 
Sbjct: 185 YGYFGDVRTVDTHIKKLRLKLGEKG--DFIQTIRGLGYKFEV 224


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D   +          +G S+E   + +    L      D+  ++  L    G ++ 
Sbjct: 6   LLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMSGLEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R  +     P++ ++        +  F+ G DD + KP   RE + RVAA+ +R   
Sbjct: 66  RILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAMLKRSGD 125

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N  E   I     +       +++ +  PL  +E  +L YL+   G+   +  +   +
Sbjct: 126 KINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDALLDDV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++  V    V++H+ +LR KL +      +++ R +GY  +
Sbjct: 186 WG-YNCEVTTRTVDTHVKRLRAKLSDVGNN--IETVRGVGYRFN 226


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++           L       +  ++  L       L
Sbjct: 5   ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLML--PRMSGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + +R  +   P+I ++        +     G DD ++KP +  E+            
Sbjct: 63  EVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTH 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +           +   L  RE ++LE L  + G+ V + +I+  ++
Sbjct: 123 QSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G +D AV    ++ HI++LR KL +       + +    GY  
Sbjct: 183 G-YDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGYKFE 225


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +        +G  +      E  E L +    D++ ++  +       +
Sbjct: 5   IIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMI--PKISGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +R       +P+I ++        +    +G DD V KP   +E++AR+ A    
Sbjct: 63  ELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  ++   +G I +               L   E R+LE  M +  + +++ Q+   
Sbjct: 123 AAPERMSDILVSGEIVMDRGAHKVTRGAREVRLGPTEYRMLEVFMESPRRVLSRNQLLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     V+E  V+ HI +LRK L      DP+ + R  GY  D
Sbjct: 183 VWGQS-SEVDERTVDVHIGRLRKSLIRGNESDPIRTVRGAGYVFD 226


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +   ++         S   D+  ++  L   G   +
Sbjct: 5   ILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVML--PGMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IRAH S   ++ ++   S++  +   D G +D + KP    E+LAR+ A  R   
Sbjct: 63  ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQG 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   E            +    R+    G    L  RE  +L YL+ N+ + + + QI
Sbjct: 123 KPHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A++G +D   + NVV+ +I  +RKK+      + + + R +GY +
Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDYGGTQELIHTVRGVGYVL 228


>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +      +    L      D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236


>gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +     G  +    + +   ++       +  ++  L        
Sbjct: 8   ILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLML--PDLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S+VP+I ++     +  L   + G DD + KP   ++++ARV A+ RR   
Sbjct: 66  EICKIIRKKSRVPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLRRTSD 125

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + + S   +      V  L   E +IL  L+   GK   + ++ +
Sbjct: 126 DPVPLSNIFSFNNGDLVIDSLKYEVRKGNNVVNLTPNEYKILMTLVKYPGKTFTRDELIN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              G  D    +  V++HI  LR+K+  +      + +   +GY  +
Sbjct: 186 MALG-DDFDGFDRTVDTHIKNLRQKIETDPKSPKYILTVHGVGYRFE 231


>gi|332670978|ref|YP_004453986.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340016|gb|AEE46599.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 227

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +       + + D+  ++  L   G    E
Sbjct: 6   LVVDDDTALAEMIGIVLRSEGFEPVFCEDGDEALATFRATQPDLVLLDLML--PGRDGNE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD ++KP   +E++ARV A  RR    
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYISKPFKPKELVARVRARLRRSDEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   G      G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEHLSIGDVSIDVPGHRVARAGRPISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+ N     + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIENDPEQPEIVVTVRGVGYK 221


>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
 gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
          Length = 224

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G ++           + +S   D+  ++  L   G    
Sbjct: 4   ILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLML--PGMDGC 61

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R ++A      +P++ ++        +     G DD V KP   RE++ R+ AI RR
Sbjct: 62  DVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRR 121

Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  +     + G+   L   E R+LE LM + G    + Q+ +A
Sbjct: 122 GSRPGMGTALCRGALLLDVEAHRVTLDGQEVALTATEFRLLEDLMRHAGAVRTREQLLNA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR KL  +     +++ R +GY +
Sbjct: 182 VWG-YSFEGYARTVDTHVRRLRAKLGEEAAA--LETVRGVGYRL 222


>gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G ++E     +           D+  ++  L        
Sbjct: 4   ILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    VP++ ++        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRQIRQTKNVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     +       +    R   +      L  +E  +L  L ++  +   K ++F
Sbjct: 122 LTAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   +   V  HI +LR+K+  +      +++   +GY  
Sbjct: 182 ERIWGL-DSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGYRF 227


>gi|229916895|ref|YP_002885541.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468324|gb|ACQ70096.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G   +   ++L+    +  + R  ++ ++  L     + 
Sbjct: 6   ILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVML--PDGEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + +RA S +P++ +S        L     G DD + KP   +E+  RV A  RR+ 
Sbjct: 64  YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           GP ++  D  +  V GE   L  +E  +L   + N  + ++K  +F+ 
Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G       +N V  HI +LR+K+  N      + + + LGY +
Sbjct: 184 VWGES-FFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++     +  +    +   ++  ++  +I  G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLD--MILPGIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +   + G DD V KP   +E    +  V   Y  
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL N      +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G  +   +  +           D+  ++  L       +E
Sbjct: 6   LVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLML--PKLDGVE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + + +R     +P+I ++        +   + G DD + KP   RE              
Sbjct: 64  VCKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRRFSG 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   ++ S      G ++VF +  +  +  E      +E  +L YL+ N+ + + + Q
Sbjct: 124 PVVEETVESSEVVYTFGNLKVFPERFEAFIDDESLEFTPKEFELLVYLLENKNRVLTRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + SA++  +D A +  +V+ HIS LR K+         + + R LGY  + 
Sbjct: 184 LLSAVW-NYDFAGDTRIVDVHISHLRDKIEENSRKPLYIKTIRGLGYKFEE 233


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    +  + + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLML--PEVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++ R IR  S VP+I +S   S    +   + G DD V KP  +RE           + +
Sbjct: 62  DVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + S      G +++  D    +  G+   L  RE  +L +L  + G+ + +  
Sbjct: 122 IPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232


>gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 231

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 68  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 128 EATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 228


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G      +         ++   D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121

Query: 122 -------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        +    E G +++  +     V GE   +P +E  +LEYL+ N G+ +
Sbjct: 122 SGAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            + Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 TRGQLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +          +G S+      E           D+  ++  L    G +V 
Sbjct: 6   LVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R  +  + VP+I ++        +   D+G DD V KP    E+ AR+ A+ RR++ 
Sbjct: 66  RRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIRP 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G I +       +       L   E R+L+YLM + G+  ++ Q+  A++G
Sbjct: 126 GLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  VE   V+ H+ +LRK L NK   DP+ + R  GY+ D N
Sbjct: 186 -SDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVN 228


>gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 227

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 3/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +      L   +G ++    +      + +    D++ ++  L        
Sbjct: 4   IFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEASAMLAGNLFDLALVDIAL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+   Q+P++ ++      + +   + G DD + KP   RE++AR+ A  R+ + 
Sbjct: 62  TVCTEIKERYQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAALRKQER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   + V +        G    L   E R+L   M N    + ++++   ++   
Sbjct: 122 AGQAFEVCGLCVDTASGVVTKYGREIFLSALEYRLLLIFMNNPKNIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            E V +N +  +I +LR+K+  +      + + R  GY +  N
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPANPQIILTVRGTGYRLGGN 224


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWML--PGLSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 245

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +          +  +   D+  ++          L
Sbjct: 11  ILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDI--QMPRMDGL 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128

Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + + A               R+    R+         L R E  +LE  +++  + + +
Sbjct: 129 YAASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 189 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 237


>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 245

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S++  +       +  + + D   ++  L   G   +
Sbjct: 10  ILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLML--PGMDGI 67

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R      P+I ++        +   + G DD + KP   RE++AR+ AI RR+ 
Sbjct: 68  EITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRIT 127

Query: 120 ------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                       KV     E     V          GE   L  +E  +L Y +   G+ 
Sbjct: 128 SSSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRV 187

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +++ ++ + ++G +D   +  +V+ H+S LR+KL +       + + R  GY  +
Sbjct: 188 LSREKLLNGVWG-YDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFN 241


>gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
 gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G      N  +      +    D+  ++  L   G   L
Sbjct: 5   ILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWML--PGGSGL 62

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--ARVAAIY 116
           +L + I        +P+I ++     +  +   + G DD + KP   +E++   R     
Sbjct: 63  QLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +   E   +++        V  +   +   E ++L + M +  +  ++ Q+   
Sbjct: 123 VAPTVLDEPLEVEGLKLDPVSHRISVDDKGIDMGPTEFKLLHFFMTHPERVYSREQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALTEHGYDRLIQTVRGVGYRF 225


>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
 gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
          Length = 229

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D    ++        DG  +   ++ E    + +    D+  ++  +    G +V 
Sbjct: 9   LLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV A  RR + 
Sbjct: 69  RQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 ATVGERLEYLDIVLDAETHRVTRCEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALCQHGGDDPLRTVRGAGYAL 228


>gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB
           [Shewanella denitrificans OS217]
 gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 229

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++  I +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++       +P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   +++        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLQLDPVSHRVCVGDSVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK + N      + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVENTGHDRLIQTVRGAGYRF 225


>gi|226307885|ref|YP_002767845.1| two-component response regulator MprA [Rhodococcus erythropolis
           PR4]
 gi|229495087|ref|ZP_04388833.1| response regulator [Rhodococcus erythropolis SK121]
 gi|226187002|dbj|BAH35106.1| two-component response regulator MprA [Rhodococcus erythropolis
           PR4]
 gi|229318018|gb|EEN83893.1| response regulator [Rhodococcus erythropolis SK121]
          Length = 228

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E             + R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYTVELAVDGLDALEKILANRPDAVVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRTA 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +    R+ +       L R E  +LE LMAN  + + + +I   
Sbjct: 121 PDLDADSEMMAFEDLTLDPVTREVKRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
 gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
          Length = 236

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  +   +  E           +V  +   ++  G   L
Sbjct: 7   ILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLK-EHPEVRMLILDIMMPGIDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ R IR  S +P++ +S        +  F +G DD + KP H            +    
Sbjct: 66  EVCREIRKTSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYTT 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +     +   S +  E   + +       +  G+   L   E  IL  L +NR +  +  
Sbjct: 126 IQLGEEQQPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFSTD 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++      V  N V  HI +LR+K+ +       + +   +GY I+
Sbjct: 186 EIFEKVWNEKVYEVN-NTVMVHIRRLREKIEDNSRSPKILKTVWGVGYKIE 235


>gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 690

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 530

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 531 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 589

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 590 STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 649

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 650 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIML--PGRDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +++A               +  D      +G+   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
 gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
          Length = 230

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +    R   G +++           +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+ +       + +   +GY ++ 
Sbjct: 183 LIWSE-EYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKLEV 229


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V+D        +G  +      E    +    + D+  ++          L
Sbjct: 3   IVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVM--MPKMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------ 114
           E+ R +R+H    P++ ++    +   +   D+G DD + KP    E+LARV +      
Sbjct: 61  EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S        +++  D RD         L R E  +L+ LM N  + ++++ I 
Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDVVRGNRTISLTRTEFALLQLLMTNPRRVLSRSTIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 225


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|284991262|ref|YP_003409816.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064507|gb|ADB75445.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        D+G  +    S E           D+  ++  L        
Sbjct: 8   LLVVEDDDPIRTALRWALEDEGYDVGEAASGEEALAAVGVTPPDLMVVDLMLG--SMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P+I +S        +   ++G DD V KP   +EI AR+ A+ RR   
Sbjct: 66  TVIREVRREHDLPIIVVSARADTDDIVAALEAGADDYVTKPFQVKEITARLRALRRRATS 125

Query: 122 SNNRAETGPIRVFSDGR-----------DPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   P  V  D                  GE  PL   E R+L  L +  G+  ++
Sbjct: 126 GTPANHPVPEEVVLDSTLPALVLREAAGTVHRGGEQVPLTLTEFRLLCELASAPGRVFSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +   ++       +E +V+ HI +LR K+  +      V + R LGY +D
Sbjct: 186 QVLLERVW-EHGFFGDERIVDVHIRRLRTKVERDPGAPRVVVTVRGLGYRLD 236


>gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++   +  F + +       + R D++ ++  L        
Sbjct: 8   ILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVML--PDMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 66  SICQQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 125

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+        +             +  +  +   L   E  IL  L +NRG+ V+  ++
Sbjct: 126 YNSAEPNQEEHLIAFSGLVLDKKTHECTLNEKRLSLTPTEFSILWVLCSNRGRVVSSEEL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           F  ++G        N V  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 186 FHEVWGDKYFTNSNNTVMVHIRHLREKMHDSAEHPKYIKTVWGVGYKIEK 235


>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S +P+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    +         + D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  S VP+I ++    ++  +   + G DD + KP   R     + A     + 
Sbjct: 66  RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G + +   G    V+G    L   E ++L  L  + G+   + ++   +
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229


>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
 gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
          Length = 239

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 14  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 72  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  ++  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 192 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 238


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L       L
Sbjct: 11  ILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLML--PKIDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 69  EVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 189 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G ++      E    +  + + D++ +   ++       
Sbjct: 6   ILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQK-DIALVLLDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI  R   
Sbjct: 65  EVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTNV 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +    G I +        + G+   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 ASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   + + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG--EYIKTIWGMGYKFEV 223


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         + G   +   + +       ++  D+  ++  L       +
Sbjct: 5   ILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLML--PEVDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P++ ++        +   + G DD + KP   +E++ARV AI RR +
Sbjct: 63  EVCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQ 122

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +SNN            ++ +  + E+   +    R+E  +L +L  ++GK +++ Q+ S+
Sbjct: 123 LSNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++  +D   +  +V+ HIS LR K+         + + R LGY ++ 
Sbjct: 183 VWD-YDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKMEE 228


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G  ++             + R D+  ++  L   G   L
Sbjct: 4   ILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLML--PGIDGL 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILA 110
           E+ R +R       +P+I ++        +   + G DD V KP   R         +  
Sbjct: 62  EVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRR 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R   I    +        GP+ V     +  + GE   L  +E  +L  L+ N GK  ++
Sbjct: 122 RTGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + S I+G FD   +   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 182 DFLLSTIWG-FDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRF 231


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L G +G      ++      +      D+  ++  L   G   +
Sbjct: 5   ILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVML--PGMSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR          
Sbjct: 63  EVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  + GP+R+  D     V GE   +P +E  +LE L+ N G+ + + Q+   
Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ HI +LR K+  +      V + R LGY  +
Sbjct: 183 VWGA-DYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 227


>gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
 gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           D+  ++  L  G G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGVNF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 225


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP  +RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
 gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
          Length = 235

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   + +         G  +      +  + L ++   D+  ++  L GK G + 
Sbjct: 5   ILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLPGKTGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R       VP+I ++     Q  +D  ++G DD + KP   +E+    +     R 
Sbjct: 65  AHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++  E   +++           ++  +   E R+L + M +  +  ++TQ+   ++
Sbjct: 125 PQLTDDIVEVHGLKLDPVTHRIMGHDKIIDMGPTEFRLLHFFMTHPERVHSRTQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR+ L        +++ R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRQALTISGHDRLIETVRGAGYRF 225


>gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 222

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         DG  +                  + + ++  +   G    
Sbjct: 3   ILVVEDDLHIQRLIRETLEADGHRVTATADGNEAAAWIDGHLFEAAVLDVMV--PGRTGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL  ++R++ ++P++ ++    L    D F +G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  ELCALLRSNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVARRYQK 120

Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +         + +    +   +      +PRRE  +L  L +  G+  ++ ++   ++GL
Sbjct: 121 AAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIEHVWGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   ++  V+ HI +LR +L        +++ R LGY ++ 
Sbjct: 181 -DFMGDDRTVDVHIKRLRTRLHQ-TEAITIETVRGLGYRLEV 220


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE              
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     +  N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 239

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++    +     G  +                R D+  ++  L         
Sbjct: 11  LVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVML--PDTDGFA 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           + R +RA     P++ ++    ++  +    SG DD V KP H +EI      + R    
Sbjct: 69  VTRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGG 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +           + V  +       G    L   E R+L  L+++  K + K +I  
Sbjct: 129 PAPVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQ 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +  A +  +V+++I  LR+K+  + G   + + R +GY +
Sbjct: 189 EVW-QYGFAGDTRIVDTYIKNLRRKIDQE-GPPLIHTVRGVGYCL 231


>gi|269796463|ref|YP_003315918.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098648|gb|ACZ23084.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 231

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++        +G  +                  D+  ++  L   G    
Sbjct: 4   ILVVEDEESYREPLTYQLTREGYDVVAVADGAAGLAAYDEGGADLVLLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++        +   + G DD V KP   RE+LARV A+ RR + 
Sbjct: 62  EVCRELRQRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRQP 121

Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E          P+++  D     V+GE+  LP +E  +LE+L+ N G+ + + Q+
Sbjct: 122 AAAVDEDEADELVGSGPVQMDVDRHVVTVRGELVSLPLKEFDLLEFLLRNAGRVLTRGQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G  D   +   ++ H+ +LR K+  +    + + + R LGY +
Sbjct: 182 IDRVWG-SDYVGDTKTLDVHVKRLRAKIETDPASPELLLTVRGLGYKL 228


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   S    +   + G DD V KP   R     I A +      
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
 gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        +G  +    + E    L      D+  ++  +    G +V 
Sbjct: 9   LVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV +  RR++ 
Sbjct: 69  RRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRRVRP 128

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 STVGLRLEYEDIVLDAETHKVSRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +           D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +            V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 AAPTRLEETIDVQGLTLDPVSHRVTAGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEPSGHDRLIQTVRGAGYRF 225


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111
           E+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+             
Sbjct: 62  EVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +         + G + +  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712]
          Length = 269

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +         G ++E            +    D+  ++  L   G   L
Sbjct: 13  ILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLML--PGLDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   VP+I ++     +  +   + G DD V KP   RE++ RV ++ RR + 
Sbjct: 71  EVCRRLRATGPVPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVLRRTRT 130

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +  RA                  +  R     G    L  RE  +L Y + +     ++ 
Sbjct: 131 TAARATPAVAPRPVLRAGDLTVDTATRRATRAGAELGLTLREFDLLAYFLEHPRTAHSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +   ++G      + + V  H+ +LR K+         +++   +GY  +
Sbjct: 191 ALMRRVWGWD--FGDLSTVTVHVRRLRAKIEQDPARPRLIETVWGVGYRFE 239


>gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
 gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
          Length = 233

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++         G  +      +  + L  +   D+  ++  L    G  +
Sbjct: 5   ILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTSGLSL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R       +P+I ++   S    ++  ++G DD + KP   +E+    +     R 
Sbjct: 65  ARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++      + +            +  L   E R+L + M +  +  ++ Q+   ++
Sbjct: 125 PQLTDDEISIAGLHLDPGSHRVTGNNTLLSLGPTEFRMLHFFMTHAERVFSRGQLLDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ HI +LRK L        +++ R  GY  
Sbjct: 185 GDH-VFLEERTVDVHIRRLRKALEPSGHDQLIETVRGSGYRF 225


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G ++      +       +   D+  ++  L   G    
Sbjct: 4   ILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGL--PGMDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119
            + R +RA     P+I ++   S+Q T+   + G DD + KP    E+LARV   +    
Sbjct: 62  TVLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVRLRLVSDR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +++    R   V GE   L  RE  + E  + + G+ +++ Q+ S ++G
Sbjct: 122 SQEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D     NVV+ ++  LR+KL    G D + + R +GY ++ 
Sbjct: 182 -YDFDPGSNVVDVYVRYLRRKL----GADRITTVRGMGYRLEE 219


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G  +   +  +    +  +   D+  ++           
Sbjct: 6   ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRRIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRRFMK 123

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N         +         D R   + G+   L  +E  IL  L ++  K      IF
Sbjct: 124 LNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDILYLLASHPKKVFNVENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             ++G        N V  HI  LRKKL      D  + +   +GY+ +
Sbjct: 184 QQVWGEAYFEGG-NTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYTFN 230


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +      +    L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI     
Sbjct: 62  EVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  +  +  +Q E+  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR KL         + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKME 233


>gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S + A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESTDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225


>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 230

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S +P++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  ++  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLEIVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +   N+ +    +       +  ++      G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIM--MPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ R IR  + +P+I +S   +    +    +G DD V KP +                +
Sbjct: 64  EMCRKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       K + N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 124 LNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++     D  + +   +GY I+ 
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIEK 234


>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
 gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
          Length = 239

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 14  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 72  EVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  ++  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 192 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 238


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E  +       + +S R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
           E+ R +R+     P++ ++   S+   +   D+G DD + KP            L R   
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +       + +    R+         L R E  +LE L+AN  + + +++I 
Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EEVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L    + ++  ++          +
Sbjct: 6   ILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV ++ RR  +
Sbjct: 64  EVCRRLRNKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFLI 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + +        + GE  PL  +E  +L++L A+  +   KTQ+
Sbjct: 124 LGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   D   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVW-ESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGYKF 230


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++G  +    +          ++ D+  ++          L 
Sbjct: 1   MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIM--MPEMDGLS 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
               +R  SQVP++ +S        +    +G DD ++KP +  E+ AR       A Y 
Sbjct: 59  FCTQVRKSSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYS 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +  +   + GP+ +         +G    L   E  IL  L  N+G+  +  +IF ++
Sbjct: 119 QPEKGDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +    E      V  HIS LR+KL     G   + +   +GY I+
Sbjct: 179 WNEPGE-GSNKTVMVHISNLREKLEAALPGEKIIHTVWGVGYKIE 222


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  ++                 D+  ++          L
Sbjct: 4   ILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIM--MPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E  + +R ++QVP++ +S        +    +G DD + KP +      R       A Y
Sbjct: 62  EFCKYVRKNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRANY 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +++    G + +         +G    L  RE  IL  L  NRG+  A  +IF  
Sbjct: 122 KTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++    E      V  HIS +R+KL     G   + +   +GY I+ 
Sbjct: 182 VWNEPGE-GSNKTVMVHISNIREKLEAALPGESVIQTVWGVGYKIEK 227


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++        +G ++   +       + +S R D++ ++          L
Sbjct: 3   ILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVM--MPRRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R +R+H    P++ ++   ++   +   D+G DD + KP          R +  R  
Sbjct: 61  EVCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRAT 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+       + +  + R+         L R E  +LE L+ N  K +++  I
Sbjct: 121 RPAINEAQSHEPLRFEDLTLNPETREVRRDERQISLTRTEFALLELLIRNPRKVLSRNNI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LRKK         + + R +GY +
Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRKKTEQDGESRLIHTVRGVGYVL 226


>gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   +E   + +           D+  ++      G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLM--MPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR     P+I ++        +  F++G DD + KP   RE           A  
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +     + +      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYFNANTTTKDVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEV 237


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     +    +    +  +  ++  L   G    
Sbjct: 4   ILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLML--PGMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ + IR  S +P++ +S        +   D G DD + KP   R     + A++     
Sbjct: 62  EICQNIRIKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +    +   IR+++     E  G    L R E  +L +L  N  +  ++ Q++  I
Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G FD   + N V   I++LR+K+ +       + +   +GY  +
Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225


>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 230

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|317506815|ref|ZP_07964589.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254889|gb|EFV14185.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G S+    +           R D   ++      G   L
Sbjct: 3   ILVVDDDRAVRDSLRRSLSFNGYSVRTAENGIEALSQILEDRPDAMVLDVM--MPGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +   +P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  EVCRRLRGSGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                RD         L R E  +LE LM N  + + +T++   
Sbjct: 121 PQLEPGVEALTFQDLSLDPATRDVRRGEREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEAEGENRLIHTVRGVGYVL 223


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +              S + D+  ++  L       +
Sbjct: 5   ILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIML--PQLSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R +R  S +P+I ++   S+   +   DSG DD + KP    E+LAR+ A   +R  
Sbjct: 63  EVLRRLRRESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +  +     V+G+   L ++E  +L  L+ N+G+ + +  +  +++G 
Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   E N V+ +I  LR K+    G   + + R +GY I
Sbjct: 182 FDFVGETNSVDVYIRFLRSKIDEAFGIKLIHTVRGVGYVI 221


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   + D        +G +     S        +     D+  ++  L       
Sbjct: 5   ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLML--PDISG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---A 114
            E+ R +RA      VP++ ++        +  F+ G DD V KP   RE++ RV     
Sbjct: 63  TEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +R + G + V   G    V G    L   E R+L  L++  G+   +  + 
Sbjct: 123 RAGTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G+    +    V++H+++LRKKL +      +++ R +GY  
Sbjct: 183 SDVWGMH-AGLTTRTVDTHVTRLRKKLGDAGS--YIETLRGVGYRF 225


>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 254

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                +  + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252


>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 227

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLML--PEISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++    L   L   + G DD + KP   +E++ARV    RR + 
Sbjct: 63  DVCREIRKESHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +  + R  ++ G+   L   E  IL  L  + G+  ++ QI   + 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+   L     + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223


>gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10]
 gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Antiqua]
 gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Nepal516]
 gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Pestoides F]
 gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola]
 gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis KIM 10]
 gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola]
 gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D106004]
 gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D182038]
 gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLML--PGSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 73  LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++        +         QG +  L   E R+L+ L +  G   ++ Q+ + +Y  +
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++ G        G  +    S E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGER 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++ +  G + +          G+   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ENSDSSAYGGLVIDRSAMTVTKDGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSAPTLIRTVRGVGYRLD 225


>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 239

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 12  ILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIM--MPKVDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 70  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 129

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N              +R+        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 130 MNGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 190 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 238


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +           G  +E  +  +    L       +  ++  L       LE+
Sbjct: 7   VVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLML--PEMDGLEV 64

Query: 64  PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
            + +R      P++ ++        +   + G DD + KP   RE++AR       +  +
Sbjct: 65  CKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAPQ 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V  +  + G +++ +   +   QGE   L  +E  +L YL  N+G+ + + Q+ SAI
Sbjct: 125 ESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSAI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  +D   +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 185 W-NYDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKMEE 229


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G ++                  D+  ++  L   G    
Sbjct: 5   ILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIML--PGIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS +P+I ++    ++  ++  D G DD V KP    E+ ARV A  R+ K 
Sbjct: 63  EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   I +     +    G    L ++E  +LEYL+ N    + + +I   ++G
Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N+V+ +I  LR K+ +      + + R +GY++
Sbjct: 183 -YDYYGDTNIVDVYIRYLRSKIDDPFDRKLIHTIRGVGYTL 222


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++D   A    +   ++G    +           D+  ++  L        
Sbjct: 8   ILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  S VP+I ++    ++  +   + G DD + KP   R     + A     Y 
Sbjct: 66  RVCRAIRDTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRTYS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +  + G + +   G    +  E   L   E ++L  L    G+   + ++   +
Sbjct: 126 EPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLFTVHGVGYRFE 229


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G  +             ++   D+  ++  L   G    E
Sbjct: 5   LIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLML--PGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------A 114
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+          
Sbjct: 63  VCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRRGGEV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  +     V G+  P+P +E  +LEYLM N G+ + + Q+ 
Sbjct: 123 EVEAPDDDGLVLQEDRVMMDVERHIVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G  D   +   ++ HI +LR K+  N    + + + R LGY  +
Sbjct: 183 DRVWGA-DYVGDTKTLDVHIKRLRSKIERNPSRPEILVTVRGLGYKFE 229


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     + +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR    
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEP 122

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  E        GP+R+  +     V G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 GSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVML--PKLDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD ++KP +  E+ AR+ AI RR   +
Sbjct: 63  VCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSKN 122

Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +              + ++ R   +      L  +E  +LE L+ N  K  ++  +
Sbjct: 123 KRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREAL 182

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + ++G       +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 183 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 231


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E     +   + D+  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           + + IR+     P++ ++        +   + G DD + KP   RE+             
Sbjct: 64  VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + R +  +     G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  +
Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 LNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231


>gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 238

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++           G+S +          L  +   DV  ++  L   G   +E
Sbjct: 13  LVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGL--PGMDGVE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +  
Sbjct: 71  VCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G + +    R  E+      L R E  +L+ L  + G  + + Q+  A
Sbjct: 131 STGATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D   ++++V+ HI+ LRKKL +       V + R +GY +
Sbjct: 191 VWGE-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G      +         ++   D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121

Query: 122 S-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S                 E G +++  +     V  E   +P +E  +LEYL+ N G+ +
Sbjct: 122 SGAGADTEAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            + Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 TRGQLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234


>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 82/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D            +    +           + D+  ++  L       L
Sbjct: 4   ILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQL-VKQPDLVILDLML--PDIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
            + + IR     P+I I+   + Q  +     G DD + KP +        +   R    
Sbjct: 61  SICKSIRKKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y              + +    +   +  +   L   E +ILE L+  +G+ ++  ++F+
Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELFN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+     +   N +  H+  LR+K+ +     + + +   +GY I+
Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYIIE 227


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L    +  +
Sbjct: 6   ILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIML--PNKDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +  ++ 
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + ++N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|111024797|ref|YP_707217.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110823776|gb|ABG99059.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G +++  ++     W+      D   ++  L   G    
Sbjct: 3   LLVVEDERRLAAGLRKGLEAEGFAVDVVHNGTDGLWMARENPFDAIVLDIML--PGANGY 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +    +  P++ ++    +   ++  D+G DD + KP  +  +LAR+ A+ RR  
Sbjct: 61  QVCRTLRNEGNWTPILMLTAKVGIWDEVEGLDTGADDYLAKPFSYAVLLARLRALLRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+    R    +GE   L  RE  +LE+L+ + G+ + KT I   ++ 
Sbjct: 121 RPRPTVLEVGDLRLDPSARRVWRRGEQIDLTTREFAVLEFLLRHPGEVLPKTDILGHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + N+VE ++ +LR KL        +++ R  GY +
Sbjct: 181 -FDFDGDPNIVEVYVRRLRTKLGRPTDPPVIETVRGAGYRL 220


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      L  + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         +   + +  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 122 VAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S + A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESTDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225


>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   R +++ I+           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++      +      +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +     P              +      +G    L  RE  +L YL  + G+ + +  
Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYL 230


>gi|325002312|ref|ZP_08123424.1| two component response transcriptional regulatory protein MprA
           [Pseudonocardia sp. P1]
          Length = 232

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G  ++     +       + R D   ++          L
Sbjct: 3   ILVVDDDKAVRDSLRRSLAFNGYQVDLAEDGQAALDRMLTDRPDALVLDVM--MPRVDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRV 120

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +     P             D R+    G    L R E  +LE L+A+  + + + Q
Sbjct: 121 PDTDDGADPPSAALTFADLSLDPDTREVSRGGRSISLTRTEFSLLELLLAHPRRVLTRGQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 ILEQVWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 227


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    +  +   D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVML--PKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQAIREFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSPE 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +          D R   +      L  RE  +LE L+ N  K  ++  +   
Sbjct: 124 RAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLKI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   V+ H+ +LR+K+  N      V +K  +GY  +
Sbjct: 184 VWGE-DYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGYYYN 228


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F ++G  +   +  +    + S    D+  ++  + G  G +V
Sbjct: 6   LLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  +  + VP+I ++   +    +   D+G DD + KP   RE+LARVAA+ RR++
Sbjct: 66  CRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRRIR 125

Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          +           +GE   L   E R+L++ M + G+  ++ Q+   ++
Sbjct: 126 PALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDGVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G     +E   V+ HI +LRK +      DP+ + R  GY+++ N
Sbjct: 186 GTG-SDIELRTVDVHIRRLRKAIDVPGADDPIRTVRSAGYALETN 229


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|164686841|ref|ZP_02210869.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM
           16795]
 gi|164604231|gb|EDQ97696.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G  +      +    L  S   D+  ++  L        
Sbjct: 11  ILIVEDEIDIREGISEYLSEVGYDVMVAEDGQEGIDLFKSNEFDLVLLDIML--PKINGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR  S VP++ ++      + +  F+   DD + KP     +  R+ A+ RR++ 
Sbjct: 69  GVLSQIREISDVPVMMLTAMTDDYSQIMSFNEKADDYITKPFSVVVLHKRIEALQRRIQG 128

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              NN+     + V   G   +       L  +E ++LE L+ ++ + + + Q+  +++ 
Sbjct: 129 RQQNNKWIYKDVEVDFLGFCAKKDNNPVDLKPKEIKLLELLIKHKNQVLTRNQMLDSLW- 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DEA  + V++ +I  LRKKL      D + + + +GY  +
Sbjct: 188 EIDEAPADRVIDVYIKNLRKKLDL----DCITTVKGIGYKFE 225


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 248

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++        +G  +    +      L  + + D+  ++       +   
Sbjct: 13  ILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLM--MPKKDGW 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I +R   
Sbjct: 71  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V      L  +E  +L  +  +  +  +++Q+
Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F+     + V   +S+LR+KL         + +   +GY  + N
Sbjct: 191 LELIWD-FEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPN 240


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++D   A    +  ++ G    +           D+  ++  L        
Sbjct: 8   ILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR   
Sbjct: 66  RVCRAIRDVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAHK 125

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +             +   G    ++GE   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 ESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPHWLFTVHGVGYRFE 229


>gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E           D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALECFDQFSPDLVVLDVNL--PDTTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++        +  FD G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ILCQEMQSRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +     +    R+  +  ++ PL   E  +L  L +  G+   ++++   +
Sbjct: 124 VADSEPRSLVYGDLLIDPSRREVYIDDKLIPLSALEFDLLYCLASKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  +D   E+ VV+ HI ++RKK+   +     + + R +GY  D
Sbjct: 184 WD-YDYEGEQRVVDVHIGQIRKKVEPDVNKPVLIKTIRGVGYMFD 227


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L+DD   +          +G  ++          +   +  D+  ++  L       
Sbjct: 5   LILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVML--PELDG 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + +RA +   P++ ++        +   + G DD + KP + RE++ARV AI RR 
Sbjct: 63  FEVCKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRT 122

Query: 120 KVSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   +  +         V     +      + PL  +E  +L  L  N G+ +++ Q+  
Sbjct: 123 RHQTHEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +G FD   +   V+ HI++LR+KL +      +++   +GY +
Sbjct: 183 KAWG-FDFYGQTRTVDVHIAQLRRKLADSG--VTIETVTGVGYKL 224


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++        +   +    + E    +      D+  ++            
Sbjct: 8   LVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVM--MPDMDGFT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121
             + IR    +P++ ++        +     G DD V KP   +E +    A + R  + 
Sbjct: 66  ACKKIREKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSNQA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      I V    R   V GE   L RRE  +L +LM + GK  ++ Q+   I+GL 
Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIWGLD 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E      V++H+  LR KL++      + +   +GY  D
Sbjct: 186 TEKGSYRTVDTHVKTLRFKLKDAGAK--IKTVWGIGYKFD 223


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  +   +           A  D+  ++  L   G   +
Sbjct: 5   ILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLML--PGIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +RA S VP+I ++   S+   +   ++G DD + KP    E+    RV    R+ 
Sbjct: 63  EVARRLRAASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      + + +  R+  +      L  +E  +L+  M +  + + +  I+  ++G
Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E ++  LR+KL    G   + + R  GY +
Sbjct: 183 -YDFGGESNIIEVYVRYLRQKLEAGGGSRVIQTVRGAGYIL 222


>gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda FL6-60]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++D    +   +G       S +           D+  ++  L  G G ++
Sbjct: 5   ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGIQL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A  ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +         Q +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMALEETINLQGLSLDPVSHRVTAQDDAVEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEGSGHDRMVQTVRGTGYRF 225


>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +      G +G  L           L  +   D+  ++           
Sbjct: 8   ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIM--MPHMDGY 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R+IR     +P+I +S   S    +     G DD + KP +  E+LARV A  RR +
Sbjct: 66  EVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFR 125

Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             N                   +  + R+  +  +   L  +E  IL  L ++  K  + 
Sbjct: 126 QLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSA 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             IF  ++G        N V  HI  LRKKL  +K     + +   +GY+ 
Sbjct: 186 EHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGIGYYM 232


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +     +G ++E                 D+  ++  L       +
Sbjct: 4   ILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIML--PKFDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P+I ++    ++  ++   +G DD + KP   +E+ AR+ A+ RR + 
Sbjct: 62  KVCRKIRETKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +R+     +   +G+   L RRE  +L+ L  N  + V++ +I++ ++G  
Sbjct: 122 KEGVIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGYS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    N+V+ +I  LR KL +K     + + R  GY +
Sbjct: 182 HEEG-SNIVDVYIKNLRNKLGDKP-PRLIQTVRGYGYIL 218


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +RA   +P+I ++   S    +   + G DD V KP  +RE        L R   
Sbjct: 62  EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  +   N  + GP+ + SD       G    L  RE  +L YL  +  + + +  + 
Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+         + ++R +GY +
Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYL 227


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++             +    +  ++  +   G   +
Sbjct: 6   ILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMI--PGLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  S VP+I ++    +   +   D G +D + KP    E+    RV    + +
Sbjct: 64  EVCRRIRQFSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKLV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +  +   I + +        G    L ++E  +L+ L+ N+   + + ++   ++G
Sbjct: 124 KSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   + NVV+  I  LR K+ N      + + R +GY I  N
Sbjct: 184 -YDYVGDTNVVDVFIRYLRSKIDNGSKEKLITTIRGVGYVIKDN 226


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   +++    +    G  +      E    L  S   D+  ++          
Sbjct: 3   VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVM--MPKMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 61  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120

Query: 121 VSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  T                 G    LPRRE  +L  L     K  ++  +   I+
Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   +E  V+ HI +LR++   K     + + R LGY  
Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 221


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E  +          +   D+  ++  L       +
Sbjct: 6   ILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIML--PHINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR  S +P+I ++    +   +   D G +D + KP    E    +       R+
Sbjct: 64  EVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L    N  + G +++ +D        E+  L ++E  +L Y + N+   + + +I  A++
Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + N+V+ +I  LR K+ +K     + + R +GY +
Sbjct: 184 G-YDYIGDTNIVDVYIRYLRSKIDDKYNIKLIHTVRGVGYIL 224


>gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 237

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++           G+S +          L  +   DV  ++  L   G   +E
Sbjct: 13  LVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRATAPDVVVLDLGL--PGMDGVE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +  
Sbjct: 71  VCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +    G + V    R  E+      L R E  +L+ L  + G+ + + Q+  A+
Sbjct: 131 GAGTTASVLRIGALTVDQSSRRVELDASPVELTRTEFDLLQALAEHPGRVLNRRQLTDAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  D   ++++V+ HI+ LRKKL +       V + R +GY +
Sbjct: 191 WGE-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 233


>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +           +  +   D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +               RV ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EHVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
 gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1
 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    S E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  + +     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESTDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    S E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++ A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +     G  +   ++             D+  ++           
Sbjct: 7   ILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIM--MPDMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  SQ+P++ ++     +  +   + G DD + KP   RE    +       R 
Sbjct: 65  EVCQRIRQTSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +  +R + G I +  DGR   +  E   L RRE  +L +L+ N+G+  ++ Q++  ++
Sbjct: 125 LSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                +     V++HI  LR KL  K     + +   +GY  + 
Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKL--KGAERHIKTVWGVGYKFEE 226


>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
 gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 5   ILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLML--PGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+    P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICREVRSQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++ +  R   V GE      +E  +L +L  +      K ++F
Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
 gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +    + E    + S     +  ++      G   L
Sbjct: 6   ILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVM--MPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
           E+ R IR  S +P+I +S        +     G DD V KP +          +      
Sbjct: 64  EMCRKIRESSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     NN      + +  D     +  E   L   E  IL  L ++ GK  +  +
Sbjct: 124 LNPNAGPNYVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           IF  ++         N V  HI +LR K+  ++     + +   +GY I+ 
Sbjct: 184 IFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIEK 233


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +           + D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVML--PDMDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++     +  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  TVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++          + +  D  +    GEV  L   E ++L YLM N  + ++K QI   
Sbjct: 128 SLDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDH 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+        + +KR +GY +
Sbjct: 188 VW-EYDFNGDASIVESYISYLRRKIDVGGHEKMIHTKRGVGYML 230


>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 249

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E         + D+  ++  L    +  +
Sbjct: 18  ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVML--PKKDGI 75

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 76  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKT 171
             N  A            +  ++ E F +           +E  +L YL+  +G+ + + 
Sbjct: 136 FVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITRE 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 196 HMLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 245


>gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G         +         R D+  ++  L   G+  +
Sbjct: 28  ILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRPDLVLLDLML--PGKDGI 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR   
Sbjct: 86  DVCKEIRAESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRFDA 145

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T     +   G      GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 146 PAQETLTIGDLTIDVAGHAVTRAGERISLTPLEFDLLVCLARKPWQVFTREVLLEQVWG- 204

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 205 YRHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 244


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + +        +G         +       +   D++ ++      G    
Sbjct: 6   ILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIM--MPGLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR    +P+I +S   S    +     G DD + KP +  E++ARV A  RR K 
Sbjct: 64  EVTRLIREQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLRRFKQ 123

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N  A               ++ + R   + GE   L  +E  IL  L     K  +   
Sbjct: 124 LNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDILYLLARYPKKVFSADN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           IF  ++G        N V  HI  LRKKL   K     + +   +GYS 
Sbjct: 184 IFEMVWGEAYYEG-SNTVMVHIRTLRKKLGEEKTKNKWIKTVWGVGYSF 231


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           P+R+  +     V GE   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227


>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
           [Halorhodospira halophila SL1]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   V++  I      G  +                  D+  ++  L    G + 
Sbjct: 5   ILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVSGVEW 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +      Q+P+I ++     +  +  FDSGVDD V KP   RE+ ARV A+ RR  
Sbjct: 65  ARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRRTA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S           R+          G+   L   E R+L + MA+  +   +TQ+   ++
Sbjct: 125 PSTADTPLEAAGLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEERTVDVHIRRLRKILATTGHDGLVQTVRGAGYRF 225


>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G+  +   +       +      D+  ++          
Sbjct: 4   ILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIM--MPNMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +
Sbjct: 62  WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ ++  T    ++     + +   EVF LP +E  +L  L +  G  + + ++   I+G
Sbjct: 122 VAASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V+DG        G  +    + E       S R D   ++  L   G   LE
Sbjct: 5   LIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLML--PGMSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------Y 116
           + R IRAH QVP+I  +        +   ++G DD V KP+  R + AR+ A+       
Sbjct: 63  VCRRIRAHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGGT 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +      G + +   G     QG    L   E R+L  L A+ G+  ++ Q+  A
Sbjct: 123 ADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   +  +V++ + +LR K+  +      V + R  GY  
Sbjct: 183 VW-EHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGYRF 226


>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++I+D   + +         G  +    + +         + D+  ++  L    G ++ 
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMDGLEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ +       +P+I ++        +   + G DD + KP   R     I A +    +
Sbjct: 66  KVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G I + +       +G+   L  +E  +L+ L  N+GK + +  +   +
Sbjct: 126 VEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLKEFELLKLLSQNKGKVLTRDYLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++ A E   V+ HI  LRKK+  +      +++ R +GY +
Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKL 228


>gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLQIDEDTCRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
 gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +    +      L    + D+  ++          +
Sbjct: 6   IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIM--MPNMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E    IR    +P+I +S        +    +G DD + KP +          ++     
Sbjct: 64  EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +   ++++  E   + + +   + +V  +   L  RE  ILE L  N+G   +  +I
Sbjct: 124 FNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  ++   +    +N V  HI KLR+K+         V +   +GY ++ 
Sbjct: 184 YERVW-KEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEK 232


>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
 gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        + G S+             S    D+  ++  L        
Sbjct: 4   ILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIML--PKIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            +  +IR  S VP+I ++   + +  +   D   DD + KP         +A V     R
Sbjct: 62  GVCEVIRQKSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  DG       E   L  RE  IL  L+ ++G+ + +  +   ++
Sbjct: 122 QDDVPQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++   EE ++++HI  LRKKL      D +++ R +GY ID 
Sbjct: 182 -KYEFFGEERIIDTHIKNLRKKLGTA---DYIETIRGVGYRIDK 221


>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVML--PKYDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD ++KP +  E+ AR+ AI RR   S
Sbjct: 63  VCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGKS 122

Query: 123 NNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +               ++ ++ R   +      L  +E  +LE L+ N  K  ++  +
Sbjct: 123 KRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREAL 182

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + ++G       +   V+ H+ +LR+K+         V +K  +GY  
Sbjct: 183 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYF 231


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 129 EAIAGIPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
 gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +          A   +  ++  L   G   + 
Sbjct: 17  LIVEDEPKLGQLLVDYLQAAGYRTQWITNGVEVVAAVRQAPPAIILLDLML--PGSDGIT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 75  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQQ 134

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 135 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 195 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 234


>gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V+D       + G  +   ++ +         R D+  ++      G   LE
Sbjct: 26  LIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVM--MPGMDGLE 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
             R  RA  QVP+I ++   +    +   + G DD V KP    E+    R         
Sbjct: 84  FLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSSEP 143

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N     G + +    R   V+GE   L R E  ++   +   G+   + ++       
Sbjct: 144 LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQ--LQ 201

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +    E  ++ H+  LR K+         +++   +GY ++
Sbjct: 202 EEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLN 243


>gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
 gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 5   ILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSLEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSEHDRLIQTVRGAGYRF 225


>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 234

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++I+D   + +         G  +    + +         + D+  ++  L    G ++ 
Sbjct: 6   LVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVDGLEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ +       +P+I ++        +   + G DD + KP   R     I A +    +
Sbjct: 66  KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G I + +       +G+V  L  +E  +L+ L  N GK + +  +   +
Sbjct: 126 PEEEKEEIIRFGDIVIDTGKHLVYKKGKVLDLTLKEFELLKLLSQNMGKVLTRDYLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++ A E   V+ HI  LRKK+  +      +++ R +GY +
Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKL 228


>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +     +G    G  + E    L      D+  ++  L   G    
Sbjct: 4   ILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLML--PGISGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            L R +    +VP+I ++   +    +   + G DD V KP   RE+LAR+         
Sbjct: 62  TLCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 121

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     GPI +     +  + GE+   P +E  +LEYLM N+G+ + + Q
Sbjct: 122 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+  +      + + R LGY I
Sbjct: 182 LIGRVWG-SDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 229


>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
           [Saccharophagus degradans 2-40]
          Length = 234

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++D           ++      +    L    + D+  ++  L G  G ++
Sbjct: 6   ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +     S++P+I ++        +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 66  ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +        +      +   E R+LE+ + ++ +   + Q+   ++
Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L  +     + + R  GY  
Sbjct: 186 G-GNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 7   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 65  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 124

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 125 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 185 REHLLEIVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 235


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         R D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E           +  D      +G++  L  RE  +L YL  + G+ + +  +  
Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 TVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 227


>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G +++  ++ +    L  +    +  ++  L   G    
Sbjct: 5   ILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQL--PGMNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL   IR + +VP++ +S        +  F+ G DD + KP             ++  V 
Sbjct: 63  ELCSHIRKNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYVR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + ++    ++      + +    R   V+ +      RE  +LE+L ++  +   K ++
Sbjct: 123 LLGKQSPSPSSEIHIRGLVIDKTARRVFVRNQEVAFTTREFNLLEFLASHPNRVFNKHEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G+ D + +   V  H+ KLR+K+  +      +++    GY  
Sbjct: 183 FERIWGM-DSSGDIATVTVHVRKLREKMELDPSNPQYIETVWGAGYRF 229


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +      D+  ++  L    +  +
Sbjct: 5   ILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIML--PNKDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+N  + G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++       + G  +    + +       +   D+  ++  L    G +V
Sbjct: 4   ILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE-IDLVVLDLMLPEVDGMEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  +   Q+P+I ++        +   + G DD + KP   RE++AR+ AI+RR+K
Sbjct: 63  CRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFRRIK 122

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 E    ++             +  +  E   L  +E  +L YL+ N+G+ +++  
Sbjct: 123 ELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLSRDL 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G ++ A +   V+ HI +LR+K++       + + R +GY  
Sbjct: 183 LLEKIWG-YEYAGDTRTVDVHIRRLRQKIKADQ----IVTVRGVGYKF 225


>gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESTDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            D   +  +V++ + +LR K+ +       + + R +GY +D 
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDV 226


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +           + D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVML--PDMDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++     +  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  TVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ A    +       D  +    GEV  L   E ++L YLM N  + ++K QI   +
Sbjct: 128 SLDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+        + +KR +GY +
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYML 229


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRTRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +      P+R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEHEPGNPRHLVTVRGLGYKFE 225


>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    +      +  + + D+  ++       +   
Sbjct: 4   ILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLM--MPKKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 62  ELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V      L  +E  +L  +  +  +  +++Q+
Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 182 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPN 231


>gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
 gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G         +      +    D+  ++  L   G   +
Sbjct: 5   ILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWML--PGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--ARVAAIY 116
           +L + I++      +P+I ++     +  +   + G DD + KP   +E++   R     
Sbjct: 63  QLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +   E   +++               +   E ++L + M +  +  ++ Q+   
Sbjct: 123 VAPTVLDEPLEIEGLKLDPVSHRISTHDRSIDMGPTEFKLLHFFMTHPERVYSREQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALHEHGYDRLIQTVRGVGYRF 225


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +        G +G ++           L  + R D+  ++  L        
Sbjct: 5   ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVML--PKLNGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S+   +   DSG +D + KP    E+LAR+    R    
Sbjct: 63  EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 122

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++          + +D R   ++G+   L +RE  +L +L+ N+G  +++  +   ++G
Sbjct: 123 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A + N V+ +I  LR K+        + + R +GY I
Sbjct: 183 -FDFAGDTNAVDVYIRFLRGKIDEVFNVKFIHTVRGVGYVI 222


>gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  +  + + +       + R D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
            + + IR     P+I ++        +     G DD + KP +          +      
Sbjct: 63  TICQKIREKYFYPVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQLRRYTK 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +       +   + +     +  + GE   L   E  IL YL  NRGK V+  +
Sbjct: 123 YNQVETVVEEKEEHDIKGLVINKTTHECTLFGEKIELTPIEFSILWYLCENRGKVVSSEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +F  ++G        N V +HI +LR+KL         V +   +GY ++
Sbjct: 183 LFEQVWGEKYYD-SNNTVMAHIGRLREKLHEPPRKPKFVKTVWGVGYKVE 231


>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     +    L ++   D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVML--PKLDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILARV 112
           + + IR  S VP++ ++        +   + G DD + KP +               +  
Sbjct: 64  VCQSIREFSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASIG 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A  +  +   N  E G + +    R   + G  + L  +E  +L  L+ N  K  ++  
Sbjct: 124 MAAAQERREEENIIENGDLVLDKSNRRLTILGVEYNLTSKEFDMLLLLVTNPRKVFSRED 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +   I+G  D   +E  V+ H+ +LR+K+  N      V +K  +GY
Sbjct: 184 LLHTIWGT-DYPGDERTVDVHVRRLREKIEPNPKEPKYVRTKWGVGY 229


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218


>gi|16125434|ref|NP_419998.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234177|ref|YP_002516613.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13422504|gb|AAK23166.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963349|gb|ACL94705.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 254

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +E        E + +    D+  ++  L   GE  L
Sbjct: 22  ILIVDDDPGIRDVVSDFLAKHGYVVETAQDGRTMEQVLARGPIDLIVLDVML--PGEDGL 79

Query: 62  ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R + A  + P I + S        +   + G DD + KP + RE+LARV A+ RR +
Sbjct: 80  AICRRLSATPEAPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARVRAVLRRRQ 139

Query: 121 VSNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +         G             Q  V  L   E  +L   +    + + + Q
Sbjct: 140 EPRAVDDAMGAACEFAGWRLDLVRRELRSPQSIVVNLSSGEFSLLRAFVERPQRVLTRDQ 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     G  D    +  ++  IS+LR+KL +  G + + + R  GY  
Sbjct: 200 LLDLARGR-DSDAYDRAIDVQISRLRRKLDDGGGSELIRTIRSEGYMF 246


>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + +++ I+           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++      +      +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223


>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 5   ILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLML--PGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+    P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQIRSQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  +L +L  +     +K ++F
Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++  +       L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVML--PTMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLK 120
            + +++RA    P++ ++    +   +   + G DD + KP      +        R   
Sbjct: 61  AVLKVLRATHATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    R  +       L  RE  +L+ L+  +G+ +++TQI S ++ +
Sbjct: 121 RESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIQTVRGVGYVIE 220


>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G +++  +S +      ++ + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVML--PGMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +  +IR  S VP++ ++        +   ++G DD V KP   +E++ARV A  R  + +
Sbjct: 64  ICSLIRQKSDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRGREET 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      V   G      G+   L   E  +L  L  +  K  ++ ++   ++G +
Sbjct: 124 TEEHVRLGDLVVDVSGHHVTRAGQPIQLTPLEFDLLVALGRSPWKVFSREELLETVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIERDPEHPEIVITVRGVGYR 221


>gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
 gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    S E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR---EDVSAIEAFLIGKGEK 59
           ++++D  L+++  +    ++G  +   +       +   +      V  +   L+     
Sbjct: 22  LVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLPQVN 81

Query: 60  VLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
            L+L R++    + +P++ +S   S    +   + G DD + KP   RE++AR       
Sbjct: 82  GLDLCRLLRYRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRALIRR 141

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          +   I+++       V+GE   L  +E R+LE  + N  +  ++ Q+ 
Sbjct: 142 QHLNGITPTPVQQFREIKLYPQECRVTVRGEDVNLSPKEFRLLELFINNPRRVWSRDQLI 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 202 DQVWGM-DFVGDTKTVDVHIRWLREKLEEDPSKPEYLITVRGFGYRF 247


>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    S +           D   ++      G   L
Sbjct: 5   ILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIM--MPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---------NKPIHHREILARV 112
           ++ R IR    VP++ +S        +   + G DD +            I         
Sbjct: 63  DVCRSIRKSYNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFRKIDR 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N      P+ +     +  +      L  +E +IL  L+ N    + + Q
Sbjct: 123 LFKEWNELSPNRERNDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLVHNPNNVLTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEHVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +               L  +   D+  ++  L    G +V
Sbjct: 3   ILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
               R         ++ ++        +    +G DD + KP    E           + 
Sbjct: 63  CTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRRSL 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +      +       +  +  +      E+  L   E  +L   M+  G+  ++T
Sbjct: 123 RHGGTQNNVYETSHFMVDLDKHSAIKKADNNTEEILELTTLEFNLLSTFMSYPGRVWSRT 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+   ++G  D   +E VV++H+ +LRKK+  K      + +   +GY  +
Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPKTANPTFIKTVVGVGYKFE 232


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    + S  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQML--PEIDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+ S++P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               ++   +           +          G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D    +   +G  ++   +        +S R D+  ++  L        
Sbjct: 4   ILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLML--PDCSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I   S +P+I +S        +   + G +D + KP  +RE++AR+  + RR + 
Sbjct: 62  DLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++        +       +  D +  +  G    L  +E  ILE L     K   + ++ 
Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D + +   V+  I +LRKK+         V +    GY +
Sbjct: 182 EIVWG-YDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227


>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
 gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++      +    + S  + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIML--PNRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++   S    +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  EVCREIRKKYDFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNI 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +N  + G + +  D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 APAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYL 229


>gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
 gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++    L   +G  +           L  S   D+  ++           
Sbjct: 5   ILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIM--MPNMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    +R  S VP++ ++           F SG DD + KP  + E+ ARV A+ RR +V
Sbjct: 62  QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              + E              + +    ++ EV G+   L   E  IL  LM N  +  + 
Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q++   +         N +  HI  LRKK+  +      + +    GY  +
Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G ++                  D+  ++  L   G    
Sbjct: 6   ILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIML--PGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS +P+I ++    ++  ++  D G DD V KP    E+ ARV A  R+ K 
Sbjct: 64  EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I +     +    G    L ++E  +LE+L+ N    + + +I   ++G
Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N+V+ +I  LR K+ +      + + R +GY++
Sbjct: 184 -YDYYGDTNIVDVYIRYLRSKIDDPFDRKLIHTIRGVGYTL 223


>gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 258

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 32  ILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLML--PKLNGM 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           +L +IIR  S++P++ IS              G DD + KP    E+       + R   
Sbjct: 90  DLLKIIREQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQ 149

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      + +  +      + EV  L  +E +I++ L  N  K   + QI+
Sbjct: 150 YAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIY 209

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   D   +EN++  H+ +LR+K+ +       + +   +GY +
Sbjct: 210 RSVWNE-DYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 255


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + ++   D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE           +  
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           AA  +    ++     G + +  D    +   +   L  RE  +L +L  + G+ + +  
Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 246

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G   EGF +    +        ++  ++  L G  G  
Sbjct: 23  MIYCVEDERNIRELLVYTLETTGFEAEGFETGAELDTAMKKNMPELILLDIMLPGEDGYN 82

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  +       +P+I ++   +    +   + G DD + KP    E +ARV A+ RR 
Sbjct: 83  ILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRC 142

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +         +RV     +   QGEV  L R+E  +LEYLM N+G  +++ QI   +
Sbjct: 143 ARQSEERELHCKGLRVNVSRHEVSYQGEVKELTRKEFELLEYLMENKGLVMSRNQILCHV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL        +++ R +GY I
Sbjct: 203 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 242


>gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    S E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N A +     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESNDAASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P I ++   S++  +   ++G +D + KP    E+L RV A  R+   
Sbjct: 83  QVLRALRTAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+        + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 240


>gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
 gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +     +G +    ++    E    +   DV  ++  L   G   +
Sbjct: 7   ILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLML--PGLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA    PLI ++        L   + G DD + KP + RE++ARV A  RR   
Sbjct: 65  SVCRQLRAFCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +      ++          G+   L   E R+L  L A  G+ +++ Q+   ++  
Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHD- 183

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              A+ +  ++SH+  LR+KL     G DP+ S   +GY+ + 
Sbjct: 184 DGRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWEE 226


>gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLQIDEDACRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   V++        +G S+E  N       + +  R D   ++          L
Sbjct: 28  ILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVM--MPRLDGL 85

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 86  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 145

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 146 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 205

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 206 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 248


>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 244

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G  +    + +    L       +  ++           
Sbjct: 22  ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIM--MPELDGW 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 80  SVCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYA 139

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                      +  I V    R  +V G+   L   E  IL YLM N+G  + + Q+ + 
Sbjct: 140 IEEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITK 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G ++ + ++  V SHI  LR KL +K     + +    GY  + N
Sbjct: 200 IWG-YEFSGDDRTVNSHIRNLRTKLGDKS--KCIITVVRAGYKFEGN 243


>gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
 gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +      L   +G ++   +S      +    R D++ ++  L        
Sbjct: 4   IFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE+ AR+    R+   
Sbjct: 62  TVCTEIKQAQNIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTALRKYGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   + V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SPAAFEMCDLHVDTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V  N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221


>gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  AVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S + A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESTDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225


>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
 gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L    + ++  ++  L        +
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVML--PKLDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + +R  S VP++ ++        +   + G DD + KP +        + + R     
Sbjct: 64  VCQQVREFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTERQ 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    +   G +++  +GR   +      L  +E  +LE L  N+ K  ++  + + 
Sbjct: 124 TEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYF 227


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + ++   DV  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE           +  
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           AA  +    ++     G + +  D    +   +   L  RE  +L +L  + G+ + +  
Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G                     D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   N       +          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLML--PEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            +   +R H + P+I ++        ++ F+SG DD + KP   RE            +V
Sbjct: 63  TVASKLREHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQV 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   +    + +  E   + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 123 ATAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  +
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFE 232


>gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 239

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLML--PGSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 73  LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++        +         QG +  L   E R+L+ L +  G   ++ Q+ + +Y  +
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G +                +  D+  ++  L   G   L
Sbjct: 6   ILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLML--PGLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A   VP++ ++        L     G DD + KP   R ++ARV A+ RR++ 
Sbjct: 64  EVCRRLQAERPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIER 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +            V    R   ++G    L   E  +L +L    G   ++ ++   +
Sbjct: 124 ARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G    A     V+SH+  LR+KL +    + + +   +GY+++
Sbjct: 184 WGWTAGAG-TRTVDSHVRALRRKLGD----EIIRTAHGVGYALE 222


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G ++      +       +A   V  ++  L       +E
Sbjct: 13  LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGL--PSLDGVE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  +   ++ ++       T+     G DD + KP   RE++AR+ A+ RR + +
Sbjct: 71  VCRQLRTFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPRPT 130

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                             GR+ +V+     L R E  +LE L    G   ++ Q+ + I+
Sbjct: 131 PTGESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLTEIW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G  D   + +VVE H++ LR+KL +  +    + + R +GY +
Sbjct: 191 G-PDWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGYRM 232


>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    L   +G  +E                 D+  ++  L    +   
Sbjct: 4   ILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIML--PEKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +     G DD + KP   +E    +  V   Y+ 
Sbjct: 62  EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +    P  +    R  +V+G+   L  RE  IL+ L+++ G+   +  I   I+
Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI-DWN 223
           G  +   E   V+ +I  LR+K+ +       + + R LGY   + N
Sbjct: 182 GE-NFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227


>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus epidermidis FRI909]
 gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU144]
 gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU045]
 gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU028]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E       + + ++  ++  L    +  +
Sbjct: 5   ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVML--PKKDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKT 171
             N   +              ++ E F +           +E  +L YL+  +G+ + + 
Sbjct: 123 FVNEIEKEDVDDEDIIIGSIRIRPEFFEVYKEDELLELTPKEFELLLYLIERQGRVITRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 183 HMLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580]
 gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
 gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G      N+           + D+  ++  L       L
Sbjct: 6   ILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWML--PDCSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +     +P++ I+    +   +   + G DD + KP   RE++AR+  I RRL+ 
Sbjct: 64  DICKKVTESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLEQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----------PLPRRERRILEYLMANRGKRVAKT 171
           +++  E    +V        V                L  +E  +L  L+ +RGK   ++
Sbjct: 124 AHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTRS 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   I+G +D   +   V++HI +LRKKL      D + +   +GY  + 
Sbjct: 184 ELLEFIWG-YDFFGDTRTVDTHIQRLRKKLD---ASDLIKTVFGIGYKFEK 230


>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
 gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    L   +G  +E                 D+  ++  L    +   
Sbjct: 4   ILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIML--PEKDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  S VP+I ++        +     G DD + KP   +E    +  V   Y+ 
Sbjct: 62  EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +    P  +    R  +V+G+   L  RE  IL+ L+++ G+   +  I   I+
Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI-DWN 223
           G  +   E   V+ +I  LR+K+ +       + + R LGY   + N
Sbjct: 182 GE-NFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227


>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +           G  +           +      D+  ++  +   G    
Sbjct: 6   ILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMI--PGIDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115
           E+ + ++       +P+I ++        +   + G DD V KP   RE    +  +   
Sbjct: 64  EVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                       +  + V  +G    V G   PL   E ++L   +   GK + + Q+  
Sbjct: 124 SATDATEERIWRSEGLSVDFEGHKLTVDGAETPLTATEFKLLAEFVRTPGKVLTRDQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +        V++H+ +LR+KL      D V++ R +GY  
Sbjct: 184 RVW-AYQFEGYARTVDTHVRRLRRKLG--PHADRVETVRGVGYRF 225


>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +    +   +G  +E             S R D+  ++  L        
Sbjct: 6   ILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIML--PDINGN 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ +++R++S +P++ ++    +   +   + G DD + KP  +RE+L RV         
Sbjct: 64  EVCKMVRSNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +      I +    +      +   L   E ++LE  M N  +   +  + + ++
Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G +D   +   V+  I++LRKK+ +       + +    GY  
Sbjct: 184 G-YDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCF 225


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                  D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR K 
Sbjct: 63  EVCREVRKSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 T          ++ D    + +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227


>gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +D       + G  ++  +  +            +  ++  L   G    
Sbjct: 3   ILLIEDNQKTRDWVSQGLSEAGYVVDQASDGKEGLRFALQESYALIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  +Q P+I ++   +++  +   +S  +D + KP    E+LARV A  R    
Sbjct: 61  QVLKALRTANQTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLRNHSP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   + + S  +     G+   L R+E  +L  L +  G+ + +T I S ++G+ 
Sbjct: 121 HHTYLKISGLEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY  
Sbjct: 180 NFDSETNTVDVAIRRLRSKVDDPFDVKLIGTVRGMGYRF 218


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N           +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + + +R+ S VP+I ++   S    +   + G DD V KP          R +L R    
Sbjct: 63  VCKALRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVEN 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L   N   E GP+R+  +    +V G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 EADLASDNGVLEAGPVRMDVERHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +    + + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIESDPAKPEHLVTVRGLGYKLE 228


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D        +G  +   ++      + S+   D+  ++  L   G    
Sbjct: 4   ILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
           E+ R IR  S VP+I ++        +   + G DD V KP   RE              
Sbjct: 62  EVCREIRRTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +  +    EV+G+   LP +E  +LE L+ N  + + + Q+   
Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G  +   +   ++ H+ +LR K+ +       + + R LGY  +
Sbjct: 182 VWGA-NYVGDTKTLDVHVKRLRAKIEDDPRNPVHLVTVRGLGYKFE 226


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +        DG              L  +   D+  ++  L        
Sbjct: 4   ILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPL--VDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   +    L+    G DD V KP   RE+         R   
Sbjct: 62  EICRRLRAAGNIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPREL-VARVHAVLRRAA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I +  +       GE   L   E ++LE L    G+  +++++   I+G +
Sbjct: 121 PAPAPRFAAIAIDFERGTLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERIFG-W 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           D    E  V+ HI+ LR+K+ +       + +    GY 
Sbjct: 180 DYEGTERTVDVHIANLRRKIDDNPAQPALIATIFGAGYK 218


>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLML--PEISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++ARV    RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +  + R  ++ G+   L   E  IL  L  + G+  ++ QI   + 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+   L     + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223


>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 256

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++        +   +    +      L  + + D+  ++       +   E
Sbjct: 25  LIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLM--MPKKDGWE 82

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I RR    
Sbjct: 83  LCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQV 142

Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +         E   ++++   R   V      L  +E  +L  +  +  +  +++Q+ 
Sbjct: 143 PIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQLL 202

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             I+   +  V  N+V   +S+LR KL         + +   +GY  + N
Sbjct: 203 ELIWDT-EHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPN 251


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    +      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVML--PKYDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + R IR  S VP+I ++        +   + G DD + KP +        + + R  A  
Sbjct: 64  VCRQIRDFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAKK 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  S      G +++  + R          L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 DGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYF 227


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  + R D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLML--PEMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR  S VP+I +S   S    +   + G DD + KP  +RE             +
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  + +      G +++ +D    +  GE   L  RE  +L +L  + G+ + +  
Sbjct: 122 TIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V         + G ++E   S           R D+  ++  L        
Sbjct: 4   ILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGL--PDLDGG 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   +++  +     G DD + KP H  E+      +  R + 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAEL-LARIQVQLRHRE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R    + +   L  +E  +L  LM   G+  ++ +I   ++G  
Sbjct: 121 GSEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGRP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NV++ H++ LR KLR    +  + + R LGY++
Sbjct: 181 -LGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAL 218


>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As]
          Length = 242

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G++G   +          L  +   D+  ++A L   G    
Sbjct: 20  ILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAML--PGRDGW 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +RA    P++ ++    +   +   + G DD + KP    E+LARV ++ RR   
Sbjct: 78  SVLSELRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVT 137

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      RV    +  E  G+   L  +E  +L  L    G+ +++T I   ++ +
Sbjct: 138 RLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDM 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+ HI +LR KL        + + R +GY ++ 
Sbjct: 198 -NFDSDTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLEV 238


>gi|259046372|ref|ZP_05736773.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259037009|gb|EEW38264.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 220

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G ++           + +    D+  ++       +   
Sbjct: 5   LLIVEDEEAIREGVREFLSEQGFTVFEACDGVEALEVFNRESVDLILLDIM--MPRKNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP++ ++     +T +  F+  VD  + KP     +  R+ A+ +R   
Sbjct: 63  EVLEEVRQKSNVPILMLTALQDEETQVKSFELLVDGYIQKPFSLMVLYKRIEALLKRHYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      V     +  V  ++  +  +E  IL+ L+ + G+ ++++QI   ++   
Sbjct: 123 EVETWSYQDTSVNFTRFEAYVNNQLVEVTAKELSILKLLVKHEGQALSRSQILDHVWSNH 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   + VV+ +I +LRKKL+     D + + + +GY ++
Sbjct: 183 EDPPFDRVVDVYIKQLRKKLKL----DCIVTIKNVGYKLE 218


>gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G++G   +          L  +   D+  ++A L   G    
Sbjct: 20  ILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAML--PGRDGW 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +RA    P++ ++    +   +   + G DD + KP    E+LARV ++  R + 
Sbjct: 78  SVLSELRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVT 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E   +RV    +  E  G+   L  +E  +L  L    G+ +++T I   ++ +
Sbjct: 138 RMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDM 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+ HI +LR KL        + + R +GY ++ 
Sbjct: 198 -NFDSDTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLEV 238


>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
 gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
          Length = 230

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   V+        + G  +   +       +    R D+  ++           
Sbjct: 5   ILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIM--MPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +  R   Q P+I ++        +   + G DD V KP   +E++AR+ A+ RR   
Sbjct: 63  GFLQAYRREHQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRRTAA 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    E  P+R+         R   V      L   E  +L  LMA+ G+   + Q+   
Sbjct: 123 ARQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQLLEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + G   E VE   ++ HI  LR+K+  +      +++   +GY 
Sbjct: 183 LQGNSYEGVE-RTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYR 225


>gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 228

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESTDSATYGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            D   +  +V++ + +LR K+ +       + + R +GY +D 
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDV 226


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G                     D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++  G       D + ++     +       +   D+  ++  L        E
Sbjct: 6   LVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPI--MTGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR   +
Sbjct: 64  VCQQIREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASKN 123

Query: 123 NNRAETGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +           +        +   +  RE  +LE L +N GK  ++ ++ + I+G
Sbjct: 124 ADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   +   V+ HI +LR+KL  N      V +K   GY  
Sbjct: 184 T-EYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYF 224


>gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWM--FPGGNGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R       +P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   +++        V  +V  +   E R+L + M ++ +  ++ Q+   
Sbjct: 123 SAPTCLEEIIDVQGLQLDPVSHRVTVNDQVLDMGPTEFRLLHFFMTHQERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTPSGHDRLIQTVRGAGYRF 225


>gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 227

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    + +  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLHIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N + +     +          G+   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EANDSASFGSLVIDRAAMTVTKNGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D        +   +    + +    +    + D+  ++  L       L
Sbjct: 4   ILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLML--PDINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
            + + IR   + P+I I+   + Q  +     G DD + KP +  E++A      R    
Sbjct: 62  NICKSIRTKYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y      ++      + +    R   + G+   L   E  +LE L+ NRG+ ++  ++F 
Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +      +   N V  HI  LR+K+       + + +   +GY I+
Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYIIE 228


>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
 gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
          Length = 236

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLML--PRVPGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++AR       ++ 
Sbjct: 66  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V  E   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFE 229


>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
 gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKETQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + V       +  G    L   E R+L   + N    + ++++   ++   
Sbjct: 122 SPSAFEICGLHVDMASGIVKKDGSEVFLSALEYRLLLVFINNPKNIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ N       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 232

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +    + E    + ++ + +V  ++  L       +
Sbjct: 5   ILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLML--PKIDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E  R+IR+ S VP++ +S              G DD ++KP             I     
Sbjct: 63  ECLRMIRSKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + V   G   +   E   L  +E  IL+  ++N  +   K+Q+
Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +++   +   +ENV+  HI +LR+K+ +       + +   +GY +
Sbjct: 183 YKSVW-EDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKL 229


>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +         ++G  +   +  E      ++    V  +   ++      ++
Sbjct: 5   LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRLNGID 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVAA 114
             R IR  S +P++ +S        +    +G DD + KP +           +      
Sbjct: 65  TCRRIRETSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +R +   + +     +    G    L  RE  IL  L    G+  +   IF
Sbjct: 125 NTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFSAEDIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      E       S   D+  ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLML--PKMDGVE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           + + +R   +QVP++ ++        +   + G DD + KP   RE+            A
Sbjct: 64  VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  N     G +++  +  +    GE+  L  +E  +L YL+  +G+ + +  +
Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            ++++  ++ A +  +V+ HIS LR+K+         + + R LGY +D+
Sbjct: 184 LNSVW-NYEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKLDY 232


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLML--PKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +                   +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYL 229


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54
            ++++D  +++D  +    ++G  ++  +       L             D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R+I    + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PSVNGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   S   A              E +     E   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQSFSTISANPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIEQVWG-PDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +     G       +      +      D+  ++  L        
Sbjct: 4   ILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLML--PDLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++     +  L+    G DD V KP   RE++ARV AI RR   
Sbjct: 62  EVCREIRRQSAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRSAD 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G + V +  +     G+   L   E R+++ L  N G+  ++ ++   +
Sbjct: 122 DLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G FD + +E  ++ H+  LR K+  +        +    GY  +
Sbjct: 182 FG-FDYSGDERTIDQHVKNLRNKVEPDPKNPTYFKTVFGFGYRFE 225


>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
 gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       D + ++     E       +   D+  ++  L        
Sbjct: 6   ILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVML--PKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           ++ + IR  S +P++ ++        +   + G DD + KP +        + + R  A 
Sbjct: 64  QVCQAIREFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G +R+  + R   +      L  +E  +LE L  N  K  ++  +  
Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRF 215
            ++G+ D   +   V+ HI +LR+K+  N      V +K  
Sbjct: 184 LVWGV-DYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   + +        +G  +      E    L    + DV  ++  L    G +V 
Sbjct: 6   LVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKISGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +P+I ++        +   D+G DD + KP   +E+ ARV A+ RR++ 
Sbjct: 66  RRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRIRP 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G I +               L   E R+L+YLM + G+  ++ Q+  A++G
Sbjct: 126 GLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK L      DP+ + R  GY+++
Sbjct: 186 -SDVYVEARTVDVHIGRLRKALSAGGEHDPIRTVRSAGYALN 226


>gi|194397670|ref|YP_002037262.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54]
 gi|194357337|gb|ACF55785.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54]
          Length = 218

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I KLRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIQKLRKKLDL----DCILTVRNVGYKLE 216


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +      E    +      D+  ++           
Sbjct: 8   ILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVM--MPKLNGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++    +   +   + G DD + KP   +E+ +R+  I RR+  
Sbjct: 66  QVCQSLRQESDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITK 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S++             + + ++ R      E   L   E  +LE L++  G+ +++ +  
Sbjct: 126 SHSSHHKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   D  ++  VV+ H+S+LR KL+      D + S R +GY+I
Sbjct: 186 QKVWGYSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAI 233


>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLML--PEISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++ARV    RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +  + R  ++ G+   L   E  IL  L  + G+  ++ QI   + 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+   L     + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223


>gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S + A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESTDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N A       +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESNDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +  +    L  S   D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVML--PNLDGI 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRL+
Sbjct: 62  EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 E             +         V GE   L  +E  +L Y M  +G+ + + 
Sbjct: 122 PRQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + + I+  FD   +  +V+ HIS LR+KL  +    + + + R  GY  
Sbjct: 182 TLLNRIW-NFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKF 230


>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 223

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +    L +  + D+  I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENK-DIKIILLDIMLPDISGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           L + IR  S+VP++ I+        L  F+ G DD V KP   RE+    +         
Sbjct: 64  LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + E   I +    R+  V G+   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 124 QEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI +LR+KL  K   + + +   +GY ++
Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK--RNLIKTVWGIGYKLE 221


>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  S+R D+  ++  L   G   +
Sbjct: 5   ILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLML--PGVDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S VP++ ++        +   +SG DD V KP    E++ARV A  R    
Sbjct: 63  EVCRQVRAESDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +   G       E   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 KAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 40  LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 98  VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 157

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 158 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 217

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 218 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 259


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGYKFE 225


>gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    DG  +                  DV  ++  L   G   +E
Sbjct: 6   LVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLML--PGLDGVE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   +I ++        L     G DD + KP   RE++ARVAA+ RR +  
Sbjct: 64  VCRRLRTFSDCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAAMQRRPRQP 123

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R E  P R          R+  + G   PL R E  +L  L A     +++ ++ +A+
Sbjct: 124 RGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEFDLLAVLSARPNVVLSRAELITAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G      +E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 184 WGEG-WVGDEHLVDVHIGHLRRKLGDAPARPRFILTVRGIGYRM 226


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +         + + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV         
Sbjct: 62  EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris DP4]
 gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris RCH1]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +    +              +  ++  L   G    
Sbjct: 6   ILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLML--PGMSGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVA 113
           ++ R ++       VP+I ++        +   + G DD V KP   RE           
Sbjct: 64  DVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKR 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +      +     + +  +    EV GE   L   E R+L  L+ NRG+   + Q+
Sbjct: 124 VTGAQEPAPRGQWNVDGLFLDEEAHRVEVDGEEALLTATEFRLLAELVRNRGRVRTRDQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G ++       V++H+ +LR+K+        +++ R +GY  
Sbjct: 184 LNTVWG-YEFEGYARTVDTHVRRLRQKIGRFAA--MIETIRGVGYRF 227


>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
 gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
          Length = 254

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++          G  +   +  E    L      DV  ++            
Sbjct: 18  LIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIM--MPKLDGYG 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------- 115
           + + IR  S VP+I ++    +   +   + G DD V KP   +E+ AR+ A+       
Sbjct: 76  VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135

Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +     ++       + +  + R      E   L   E  +LE L++  G+  ++  I 
Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    D + + R  GY  
Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243


>gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +        +G                 S   D+  ++  L G  G ++
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMGTEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            +L +     + +P+I ++        +  F+ G DD + KP   RE    +  V     
Sbjct: 64  CKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLRRTM 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K        G + + ++     V GE   L   E ++L  L    G+  ++  +   +
Sbjct: 124 PEKAQGKCITIGLVTIDTERHMVSVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLQNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++H+++LR KL      + + + R  GY ++ 
Sbjct: 184 WG-YNYVGDTRTVDTHVTRLRTKLGEAG--EMIKTVRGFGYKMEE 225


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     +           D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVML--PRMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + R +R  S VP++ ++        +   + G DD + KP +        + + R     
Sbjct: 64  VCRAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRSR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S N  ++G + + +D R   + GE   L  +E  +L  L+ + GK  ++  +   
Sbjct: 124 EAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLHT 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G  D   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 IWG-SDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYF 227


>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
 gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    +         + D+  ++  L        
Sbjct: 19  ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLML--PKLSGE 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR   
Sbjct: 77  RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++             +   G    V+G+   L   E ++L  L  + G+   + ++   +
Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 197 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 240


>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +    L +  + D+  I   ++        
Sbjct: 6   LVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENK-DIKIILLDIMLPDISGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120
           L + IR  S+VP++ I+        L  F+ G DD V KP   RE++ARV AI       
Sbjct: 65  LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + E   I +    R+  V G+   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 125 QDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI +LR+KL  K   + + +   +GY ++
Sbjct: 184 YDFYGDLRTVDTHIKQLREKLGEK--RNLIKTVWGIGYKLE 222


>gi|313902445|ref|ZP_07835847.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467243|gb|EFR62755.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 232

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++    SL             +  ++  L       L
Sbjct: 6   ILVVDDEPGIREVCRLYLEREGFAVREAASLAGARAALRGEAPALVVLDLML--PDGSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +      P++ ++        +   + G DD V KP   RE++ARV A+ RR + 
Sbjct: 64  DLCRELVEAG-TPVVCLTARADETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARA 122

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          G   V    R   V G       +E  +L   + +  +   + Q+   +
Sbjct: 123 AKEPAPVTVRFGRCAVDLAARRLWVGGREVACTPKEFDLLALFVTHPHRVFTRQQLLERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  F  A +   V+ H+ +LR+K+  +      + +   +GY  D
Sbjct: 183 WD-FSYAGDTRTVDVHVQRLRRKIEPDPQHPRYLKTVWSVGYRFD 226


>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G ++      E       + + D++ +   ++       
Sbjct: 6   ILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQK-DIALVLLDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ + IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI  R   
Sbjct: 65  EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNV 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS      G I +        + G    L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 VSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   D + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG--DYIKTIWGMGYKFEV 223


>gi|222150338|ref|YP_002559491.1| hypothetical protein MCCL_0088 [Macrococcus caseolyticus JCSC5402]
 gi|222119460|dbj|BAH16795.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 223

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 3/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F      +   ++ +    L  +   D+  ++      G    
Sbjct: 5   ILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIM--MPGIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   I+   Q+P+I ++   +L      F +G DD V KP    E++ R  AI +R + 
Sbjct: 63  QLCEQIKQDYQLPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  + E G + + +D  +  ++ E   LPR+E  +L YL+ +  K   + Q+   I+G +
Sbjct: 123 AVEKVEFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLIEEIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D   +E  V+ H+ ++RK+L        + + R +GY 
Sbjct: 182 DFDGDERTVDVHVKRIRKRLDAFDSGVEIQTVRGVGYK 219


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D      G +G         +    L      D+  ++  L        
Sbjct: 5   ILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLML--PKMNGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR      P+I ++        +   + G DD + KP   RE+LARV A  RR +
Sbjct: 63  DVCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRRE 122

Query: 121 VSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ N               I V  D       G+   L +RE  +L +L A  GK  ++ 
Sbjct: 123 MAGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +   ++       +   V+  + +LR+K+ +       + ++R  GY ++
Sbjct: 183 ALMENVWNYEGYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLLN 233


>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
 gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G   E             + + D+  ++  L   G+  +
Sbjct: 5   ILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLML--PGKSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++ R IRA S+VP++ ++        +   +SG DD + KP   +E++AR+ A   R   
Sbjct: 63  DVCREIRAESRVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +          G   PL   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  + +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGYK 221


>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 267

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 44  LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 102 VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 161

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 162 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 221

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 222 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 263


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +   +       +  S +  +  ++          +
Sbjct: 6   ILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIM--MPNMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E    IR H  +P+I +S        +    +G DD + KP +          ++     
Sbjct: 64  EACIKIREHKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  ++++  E   + +     + +V  ++  L RRE  ILE L  NRG   +  +I
Sbjct: 124 LNNAMQNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++   +    +N V  HI K+R+K+         + +   +GY I+
Sbjct: 184 YERVWNE-EFYQSDNTVMVHIRKIREKIEENSRKPKYIKTVWGVGYKIE 231


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++             +  + D+  ++  L    +  +
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIML--PNKDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREVRKQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S +   +          +  +    + +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYL 228


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G  +              S   D+  ++  L   G    +
Sbjct: 5   LIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKRLRMTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAEA 122

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                         P+R+  +     V+G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 EAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 RVWG-SDYVGDTKTLDVHVKRLRSKIETDPGKPVHLVTVRGLGYKFE 228


>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ H+++LR+K + +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 223


>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
 gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
          Length = 233

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 5   IVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIML--PGRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            I V+ +    + +G    L  RE  +  YL  + G+ + +  +
Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
              ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGY 227


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D A + +        +   +E     E    L      D+  ++  + G  G +V 
Sbjct: 7   LLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGVSGIEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++ 
Sbjct: 67  RRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R     I + +        G    L   E R+L++ + + G+  ++ ++  +++G
Sbjct: 127 ALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  +E   V+ HI +LRK +      D + + R  GY++D
Sbjct: 187 R-DSDIEPRTVDVHIRRLRKAINLADAPDLIRTVRSAGYALD 227


>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +          G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +   +       +      D+  ++  +    G + 
Sbjct: 9   ILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGIEA 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +  R         +  ++      + +  F++G DD + KPI  R ++++V        
Sbjct: 69  CQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRRAG 128

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R+       +T  I V  +     +  E   LP++E  ++E L +  GK   + QI + +
Sbjct: 129 RMNGGEPEIKTSSITVNREKFLVYMNEEEIQLPKKEFELIELLASRPGKVFTREQILTTV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V E  ++ HI KLR+KL        + + + +GY+ 
Sbjct: 189 WG-DETIVGERTIDVHIRKLREKLGES----YIRTIKGVGYTF 226


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +    +   +G       +             D+  ++  L   G   +
Sbjct: 4   ILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVML--PGMSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R +R+ S VP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 62  DVCRELRSRSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRRRGE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G + +  +     V G+   +P +E  +LE LM N G+ + + Q+   +
Sbjct: 122 AEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +   ++ HI +LR K+    G    + + R LGY ++
Sbjct: 182 WG-SDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +  + R D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLML--PEMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R IR  S VP+I +S   S    +   + G DD + KP  +RE             +
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  +        G +++ +D    +  GE   L  RE  +L +L  + G+ + +  
Sbjct: 122 TIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLML--PRVPGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++AR       ++ 
Sbjct: 66  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V GE   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFE 229


>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
 gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLML--PKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +                   +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYL 229


>gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KPI  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  A +     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESTDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|258512232|ref|YP_003185666.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478958|gb|ACV59277.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         GV ++     E       S   D+  ++  L   G   ++
Sbjct: 4   LIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVL--PGMSGVD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ AI RR +V+
Sbjct: 62  LCREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEVN 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G   V  D      +G+   L  RE  +L YL+ N  +  ++ ++   ++G F 
Sbjct: 122 GAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG-FQ 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              + NVV+ +I  LR+KL        + + R  GY ++ 
Sbjct: 181 APGDTNVVDVYIGYLRQKL--DPERRYIKTVRGQGYRLEV 218


>gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R       +P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   +++        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 AAPTCLEDPIDVQGLQLDPVSHRVTVGEQVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTLSGHDRLIQTVRGAGYRF 225


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++ + D+S I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DISIILLDIMLPDISGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV    +     
Sbjct: 64  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 124 SEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222


>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 228

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D    ++        +G  +    + +           DV  ++  L    G +V 
Sbjct: 8   LVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEVC 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
              ++     ++P+I +S        +   ++G DD + KP    E+    R      R 
Sbjct: 68  RQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRVRP 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R E   I +          G+   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 128 STVAERLEYEDIAIDLTEHRVYRGGDTLSLGPTEFRLLSAFMERPGRVWSREQLLDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L+     DP+ + R  GY++
Sbjct: 188 R-DIYVDSRTVDVHVGRLRKALKVGEAGDPIRTVRGAGYAL 227


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +             D++ ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVML--PDMDGF 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 71  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      +       D  +    G V  L   E ++L YLM N  + ++K+QI   +
Sbjct: 131 PLIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 233


>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
 gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI+S
Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 233

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W]
 gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W]
          Length = 242

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+  +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    +         + D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLML--PKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  S VP+I ++    ++  +   + G DD + KP   R     + A     + 
Sbjct: 66  RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G + +   G    V+G+   L   E ++L  L  + G+   + ++   +
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229


>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 227

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G  +    + +    L       +  ++           
Sbjct: 5   ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIM--MPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYA 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                      +  I V    R  +V G+   L   E  IL YLM N+G  + + Q+ + 
Sbjct: 123 IEEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G ++ + ++  V SHI  LR KL +K     + +    GY  + N
Sbjct: 183 IWG-YEFSGDDRTVNSHIRNLRTKLGDKS--KCIITVVRAGYKFEGN 226


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLML--PEMDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E               ++  +  +  +  ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 237


>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVML--PGFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+G    L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAAHTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  +                  D+  ++  L        
Sbjct: 5   ILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIML--PSMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD + KP   RE++ARV A  RR  +
Sbjct: 63  DVCRHIREKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSM 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            NN        +   + + +          V  L  RE  +L++L     +  ++ Q+  
Sbjct: 123 PNNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G ++   +   V+  I +LR+KL +       + +KR +GY  
Sbjct: 183 QVWG-YEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFF 227


>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 233

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +         G  +                  D+  ++  L   G   L
Sbjct: 6   ILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLML--PGIDGL 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VA 113
           E+ R ++       +P+I ++        +   + GVDD + KP   RE++ R       
Sbjct: 64  EVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRR 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +       +     + V  +    E  G++  L   E ++   L+ + GK   +  +
Sbjct: 124 STEQPEPRRPGKWSREGLSVDFEAHTVECDGDLVALTATEFKLFSELLQHEGKVRTRDHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++           V++HI +LR+KL      D +++ R +GY  
Sbjct: 184 LDTVWDTH-FEGYSRTVDTHIRRLRQKLGPY--ADYIETVRGVGYRF 227


>gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +   ++ +           D+  ++  +    G + 
Sbjct: 8   ILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R +       ++ ++      + +  F  G DD + KPI  R +++R+ AI RR  
Sbjct: 68  CRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRNT 127

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E   +      +  D        +   L ++E  +L  L +   K   + QI  
Sbjct: 128 AEDEIHEGNRLEVSDLVIDRDSFLAYRGTDKITLAKKEFELLYLLASKPNKVFTREQILK 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +I+      V    ++ HI KLR+K+      + V + + +GY  +
Sbjct: 188 SIW-EDSVVVTNRTIDVHIRKLREKIGE----NYVATVKGVGYKFE 228


>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
 gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLML--PEMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        N     G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +    + +    +  S R D+  ++  L  K    +
Sbjct: 5   LLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEK--SGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S   +I ++        +   + G DD + KP   RE+ +R+ A+ RRL+ 
Sbjct: 63  DVCREIRQTSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +++                    G+   L   E +IL  L    G   ++ Q+  A  
Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              +    E  ++SHI  LR+KL +       + +    GY  
Sbjct: 183 -EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRF 224


>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 246

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 23/238 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V++        +G  +           + +  + D+  ++          LE
Sbjct: 4   LVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVM--MPRMDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA     P++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  +
Sbjct: 62  TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRSTL 121

Query: 122 SNNRAETGPIRV-------------------FSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                                              R    +G    L + E  +LE  + 
Sbjct: 122 VTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFLT 181

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  + ++++ I   ++G +D     N +E  +S LR+KL        + + R +GY +
Sbjct: 182 HPRQVLSRSMIMEKVWG-YDFGPSSNSLEVFVSYLRRKLEAGGEPRLLHTVRGVGYVL 238


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +           D+  ++  L   G   +
Sbjct: 6   ILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIML--PGINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR HS VPLI ++    +   +   DSG DD V KP    E    +       ++
Sbjct: 64  EICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +         + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   ++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +    + NVV+ +I  LR K+ +      + + R +GY  + 
Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCEE 226


>gi|309790007|ref|ZP_07684582.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227950|gb|EFO81603.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +  G  A F   G              L    R D+  ++          L
Sbjct: 5   ILIVDDVREIVQGLAAYFRQAGFETLAAYDGRSALDLARRERPDLIILDWM--MPELDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S VP+I ++       TL   + G DD + KP   RE++AR  AI RR   
Sbjct: 63  EVCRQLRRESSVPIIMLTARVEETDTLIGLELGADDYIAKPFRAREVVARARAILRRASG 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +  D    EV G    L   E  +L  LM N G+ +++ Q+  A  
Sbjct: 123 ALAPPSMVRGGGVSLDLDRHTTEVAGHTVELTPTEFALLLALMRNPGRPLSRAQLLDAAQ 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G       E  +++HI  LR+K+  +      + +   +GY  
Sbjct: 183 G-DAFEGYERTIDAHIKNLRRKIEADPANPRRILTVFGVGYKF 224


>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
 gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 228

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   +++            +      +    L S+   D+  ++  L G  G ++
Sbjct: 4   ILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRSGLEL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118
            +  +       +P+I IS     +  +   D+G DD +             +      +
Sbjct: 64  AQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLRRAK 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  E G + + + G      G    +   E R+L + MA+  +  +++Q+   ++
Sbjct: 124 PDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRSQLLDQVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ H+ +LRK L        + + R +GY  
Sbjct: 184 G-DQVYVEERTVDVHVRRLRKALEPTGHDRLLQTVRGVGYRF 224


>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G       + +           D+  ++  L   G+  L
Sbjct: 5   ILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLML--PGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   +SG DD V KP   +E++ARV A  R  + 
Sbjct: 63  EVCREIREISSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V   G      G    L   E  +L  L     +  ++  +   ++G 
Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    D + + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGYK 221


>gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD + + +        +G S+   ++ +    +  +   D+  ++  +    G +  
Sbjct: 14  LVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIETG 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R         ++ ++      + +  F+ G DD + KPI  R +++R+ A++RR   
Sbjct: 74  RILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRREAQ 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +T  I   S  R      +       LP++E  +L +L     K  ++ ++   I
Sbjct: 134 KAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDELLQKI 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V E  V+ HI KLR+KL +      + + + +GY  
Sbjct: 194 WGA-DIYVLERTVDVHIRKLREKLGDT----YIKTLKGVGYMF 231


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +      +   +G  +E  N       +      ++  ++      G    
Sbjct: 5   ILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIM--MPGLDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  R  + +P++ +S    +++ +   + G DD + KP    E+LARV A+ RR   
Sbjct: 63  EICRRFRRENFIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    +   +++    R+    G +  L  +E  +L+  + +  + + K  I   I+G+ 
Sbjct: 123 SAKVIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NV+E +++ LR+KL        + + R +GY +
Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEEGNRSRLIHTVRGVGYVL 220


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G ++    + E           D+  ++  +       L
Sbjct: 5   ILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMI--PKLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ +IIR  + +P+I +S   S          G DD + KP          + ++ R   
Sbjct: 63  EVLKIIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +      E   +++          G+   L  +E  IL+  + NR +   K QI+
Sbjct: 123 YSSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             I+       +EN++  HI +LR+K+ +       + +   +GY  +
Sbjct: 183 QMIW-KDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 229


>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G+  +    +      L  S + D+  ++          
Sbjct: 4   ILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIM--MPEMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            +L R +R +  +PL+ ++     +  +  F+ G DD + KP    E++ARV A+  R  
Sbjct: 62  WDLCRELRRYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +R+     + E       LP +E  +L  L +  G+ + + Q+   I+G
Sbjct: 122 VSISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ HI++LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFEGNERTLDVHINRLRERFPEETFGFKIRTIRGLGYRLEV 223


>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
 gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
          Length = 230

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E +G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++    A   D+G ++   +              D+  ++  L        
Sbjct: 15  ILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLML--PKMNGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  SQVP+I ++      + +  FD+  DD + KP     ++  + A+ RR + 
Sbjct: 73  SVCEAIRKESQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQ 132

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                            +D     V+ E   L  RE  IL+ L+ N+G+   +  +  +I
Sbjct: 133 GAGVETNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSI 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   +E +V +HI  +RKKL    G D +++ R  GY I+ 
Sbjct: 193 WG-YDYFGDEKIVNTHIKNIRKKL----GVDYIETIRGAGYKIEK 232


>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
          Length = 237

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++        +G  +    + E    L    + D+  ++       +   
Sbjct: 5   IAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------- 114
           EL   IR HS VP+I ++     +  +     G DD V KP   RE++ RV         
Sbjct: 63  ELCEEIRQHSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122

Query: 115 -IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +  +  +       + +    R   V G    L  +E  +L  +  +  +  +++Q+
Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              I+  F+     N V   +S+LR+KL         + +   +GY  D
Sbjct: 183 LEQIWD-FEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFD 230


>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
 gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  +           D+  ++  L   G    
Sbjct: 4   ILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVRAEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V G       +E  +L +L ++      K ++F
Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRF 227


>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLML--PGMSGTD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 60  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++           P+R+  +     V GE   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 120 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 180 VWGA-DYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 224


>gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 248

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++                  D+  ++           
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 129 EQVAGIPNSGVIQVADLRIDTNKRQVFRADERIRLTGMEFSLLELLVGRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +   ++ +           D+  ++  +    G + 
Sbjct: 8   ILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R +       ++ ++      + +  F  G DD + KPI  R +++R+ AI RR  
Sbjct: 68  CRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRNT 127

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E   +      +  D        +   L ++E  +L  L +   K   + QI  
Sbjct: 128 AEDEIHEGNRLEVSDLVIDRDSFLAYRGADKITLAKKEFELLYLLASKPNKVFTREQILK 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +I+      V    ++ HI KLR+K+      + V + + +GY  +
Sbjct: 188 SIW-EDSVVVTNRTIDVHIRKLREKIGE----NYVATVKGVGYKFE 228


>gi|153813960|ref|ZP_01966628.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|317501488|ref|ZP_07959686.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088040|ref|ZP_08336961.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848356|gb|EDK25274.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|316897117|gb|EFV19190.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408996|gb|EGG88455.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKARGFADGSAFTEALAFETPELILLDIML--PGEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           LE+ + ++  S+   +P+I ++   S    +   DSG DD V KP    E+    +    
Sbjct: 59  LEILKKLKCSSKTKSIPVIMVTAKGSEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +        E   + +     +  V G   PL  +E  +LE LM N G  + + Q+ +
Sbjct: 119 RSKGSQERENPEIQGVHIDVKKHEVTVDGRTVPLTLKEFELLEKLMRNEGIVLTRDQLLT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ HI  LR+KL  K   + + + R +GY I
Sbjct: 179 EIWG-YDFDGETRTVDVHIRTLRQKLGEKG--EIIQTVRGVGYRI 220


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G ++   +  E    L    + ++  ++  L        
Sbjct: 10  ILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIML--PKLDGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
            +   +R  S VP+I ++    +   +   + G DD V KP + +E+ ARV         
Sbjct: 68  TVCSELRKKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEK 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    + G + + +  +          L   E  +LE L+ N G+R+++  I  
Sbjct: 128 TSNYSSNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSLLELLITNAGERLSRAYILD 187

Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G   +  ++  VV+ HIS+LR KL  +    D + + R  GY  
Sbjct: 188 TVWGYTPERYLDTRVVDVHISRLRSKLEIDPGKPDLILTARGTGYMF 234


>gi|312138612|ref|YP_004005948.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325676321|ref|ZP_08156000.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311887951|emb|CBH47263.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325552882|gb|EGD22565.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 228

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G +++            +++R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYTVDLAVDGMDALEKVAASRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +    R+    G    L R E  +LE LMAN  + +++++I   
Sbjct: 121 PAAGDDSEAMTFEDLTLDPVTREVTRGGRSISLTRTEFALLEMLMANPRRVLSRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   ++D         G      +  +    L  +A  D+  ++  L    G +V
Sbjct: 6   ILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +  +  + +P+I ++        ++  + G DD + KP    E++ARV       R
Sbjct: 66  CRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRRTR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     +   G + +  + +   ++G    L   E R+LE L    G+ V++ ++   I+
Sbjct: 126 MTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGRIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            L     +   V+ HIS+LRKKL +       + + R  GY I W
Sbjct: 186 NL--YGGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRITW 228


>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 234

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +          +G  +           L      D   ++  L    G ++
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGMEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     ++ P++ ++        +   + G DD + KP   RE+LAR+ AI+RR++
Sbjct: 64  TQRLRQ--EKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +                      V   +  L  +E  +L Y M  + + + +  
Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+  FD A +  +V+ H+S LR+K+  +      + + R  GY  
Sbjct: 182 LLDRIW-NFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKF 229


>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 226

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G+  +   +       +      D+  ++          
Sbjct: 4   ILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIM--MPNMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +
Sbjct: 62  WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ ++  T    ++     + +   EVF LP +E  +L  L +  G  + + ++   I+G
Sbjct: 122 VAASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
 gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
 gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        +G         E    L    R DV  ++  L    G +V 
Sbjct: 10  LIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIEVC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       V +I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 70  RQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRVRP 129

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S            + ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 130 STVGQVLTFEDFVLDAETHRVTRADKPLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 190 R-DIYVDTRTVDVHIGRLRKALTAHGGSDPVRTVRGAGYAL 229


>gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 244

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G  +              +   D+  ++           
Sbjct: 11  ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIM--MPRIDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I +S        +   D G DD + KP +  E LARV +  RR   
Sbjct: 69  QVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYG 128

Query: 122 SNNRAETGPI-----------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
               A                       +  D        E   L   E R+L   M++ 
Sbjct: 129 MPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHP 188

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+   K QIF   +G  +     N V   ISKLR KL +  G   + + R LGY ++
Sbjct: 189 GRVFTKQQIFEEGWGE-EYVASGNNVMVGISKLRAKLSDDPGA-YIATVRGLGYRME 243


>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 221

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV         
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEIIIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  V+++HI  LR+KL      D + + R +GY I+ 
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIRTIRGVGYKIEK 221


>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 234

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD AL++          G  +    S E    L      D+  ++  L   G   L
Sbjct: 5   ILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINL--PGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  R     P+I ++        +   + G DD + KP     +LAR+ A+ RR+  
Sbjct: 63  DALRRFREEVGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRVSG 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R    P         +          G+   L  RE  +L  L    GK V   ++ 
Sbjct: 123 GEERKPAEPQPLLIGELRIDPLAHTVHRAGKPVDLSPREFDLLYTLALEAGKVVPADELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + ++G  +   E  V+  HI  LR+KL +       + + R +GY +
Sbjct: 183 ARVWGA-EFVGEPQVLYVHIRWLREKLEDDPQNPHYILTVRGVGYKL 228


>gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E   +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 223

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G S+   ++ E    L    + D+  I   ++       
Sbjct: 6   ILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQK-DIVLIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E  + IR +SQVP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI  R   
Sbjct: 65  ETCKTIRKYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSNA 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ +  E G I +        + G+   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 VTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNNVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   D + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGEKG--DYIKTIWGMGYKFEV 223


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G   E            +S R D+  ++          L
Sbjct: 15  ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDI--QMPRMDGL 72

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A   VP++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 73  TAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 132

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  +A              R+    R+         L R E  +LE L+A+  + + + 
Sbjct: 133 YAVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQVLTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 QILKAVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L        
Sbjct: 11  ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLML--PRVPGE 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV      ++ 
Sbjct: 69  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V G+   L   E ++L  L    G+  ++ ++   +
Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 189 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232


>gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
 gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
          Length = 237

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +               L      D+  ++  L    G +V
Sbjct: 3   ILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
               R         ++ ++        +    +G DD + KP    E           + 
Sbjct: 63  CTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +              +  +  +  +   +   L   E  +L   M+  G+  ++T
Sbjct: 123 RHGGSQNNVYETPHFMVDLDKHSAVKKLEDNTEDTLELTTLEFNLLSTFMSYPGRVWSRT 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+   ++G  D   +E VV++H+ +LRKK+         + +   +GY  +
Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPDTANPTFIKTVVGVGYKFE 232


>gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EANDSATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +    + +    L +  + D+  ++  L       +E
Sbjct: 9   LVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWML--PNVSGIE 66

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++A     Q+P+I +S        +   ++G DD V KP    E++AR+    RR 
Sbjct: 67  ICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARLRTQLRRT 126

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + ++         I + +        G+   L   E R+L  LM   G+   + Q+   +
Sbjct: 127 RPASMGERLSFADIILDAGEHRVFRAGQPVHLGPTEFRLLSTLMEKPGRVWTREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   ++ H+ +LRK L    G +PV + R  GYS+
Sbjct: 187 WGR-DIYVDTRTIDVHVGRLRKALMANGGNNPVRTVRGTGYSL 228


>gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272]
 gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227]
          Length = 240

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S VP++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 248

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 18/236 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G S+    +      +  S   D+  ++  L    G  +
Sbjct: 3   ILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGFDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R  +  + +P++  +        +   + G DD V KP   + ++ARV  I RR +
Sbjct: 63  CRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRRAQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRV 168
            +                                          E  IL +L  N G+  
Sbjct: 123 EAKPADTAASPFDRLQTVSRHFLVIKPEKFEVTVSGKQVQFSATEFAILLHLAQNPGRVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSI 220
           ++ QI +AI G     V E  ++  I  +RKKL     N    + +++ R +GY +
Sbjct: 183 SRQQIINAIKGDS-YPVTERSIDVQILSIRKKLSEAAGNDSAQNIIETVRGVGYRM 237


>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
 gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
 gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +          +G  +           L      D   ++  L    G ++
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGMEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     ++ P++ ++        +   + G DD + KP   RE+LAR+ AI+RR++
Sbjct: 64  TQRLRQ--EKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +                      V   +  L  +E  +L Y M  + + + +  
Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+  FD A +  +V+ H+S LR+K+  +      + + R  GY  
Sbjct: 182 LLDRIW-NFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKF 229


>gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
 gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 227

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRNESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLQIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 238

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G +++   +      L      D+  ++  L       L
Sbjct: 3   ILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRML--PDMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R+     P++ +S   +L   +   + G DD + KP    E+LARV A+ RR +
Sbjct: 61  QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  R +   + +    R      E   L  +E  ILEY+M N+G+ +++T I   ++ +
Sbjct: 121 PTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D     N+V+ +I  LR K+ ++     + + R +GY I+
Sbjct: 181 -DYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L      D+  ++  L        
Sbjct: 12  LLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVML--PDMDGF 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R   Q  P++ ++        +     G DD V KP    E++AR+ AI RR  
Sbjct: 70  TVTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTS 129

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S++      + +  D  +    G    L   E ++L YL+ N G+ ++K QI   
Sbjct: 130 AGLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+              + +KR +GY +
Sbjct: 190 VW-QYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLL 238


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + S+   DV  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLML--PEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR + 
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +                 +  D        +   L  RE  +L +L  + G+ + +  
Sbjct: 122 AADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
          Length = 232

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D        +G  +   +  +    +  +   D+  ++           
Sbjct: 6   ILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQVRAQYNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRRSMK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQI 173
            N+        +   G       +              +E  IL  L ++  K  +   I
Sbjct: 124 LNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-NDAYFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L   G   +
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLML--PGMDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R H  Q P+I ++        +   + G DD V KP   RE+LARV A  RR +
Sbjct: 63  DVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQ 122

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G +   +D       G    L  RE  +L Y+  N GK +
Sbjct: 123 RGGASASESRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVM 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            +  +  A++G F+   +   V+  I +LR+K+       + + ++R LGY
Sbjct: 183 TREHLLQAVWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGY 232


>gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
 gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
          Length = 246

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  +E     +  +        D+  ++  L   G   +E+
Sbjct: 7   VVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWML--PGLSGVEI 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R        P+I ++        +     G DD V KP   RE  ARV A+ RR  
Sbjct: 65  CRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRAS 124

Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +            G    L   E ++LE+LM   G+   + Q+   ++
Sbjct: 125 PEKVASVLSAGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G  D  V+E  V+ H+ +LRK +      DP+ + R  GY++D 
Sbjct: 185 GR-DIYVDERTVDVHVGRLRKAINRARDRDPIRTVRGAGYALDE 227


>gi|262201364|ref|YP_003272572.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084711|gb|ACY20679.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G +++             S R DV+ ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLTFNGYAVDTAGDGIEALEKIVSDRPDVAIMDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDTVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAV 120

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                RD         L R E  +LE LMAN  + +++++I   
Sbjct: 121 PDEEADSETLRFADLSLDPVTRDVSRGDRHISLTRTEFALLEMLMANPRRVLSRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEDRLIHTVRGVGYVL 223


>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++            +E   S E      +    DV  ++  L   G    E
Sbjct: 5   LLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLML--PGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IRA S   ++ +S        +   ++G DD V KP+  + + AR+ A+  R   V
Sbjct: 63  VCRRIRAASSTSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + V          G    LP  E R+L YL A  G+  ++ Q+  +++   
Sbjct: 123 PSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVW-EH 181

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           D   +  +V++ + +LR K+ +       V + R  GY  
Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGYRF 221


>gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 235

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++           + D+  ++  L     +  
Sbjct: 9   LIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIML--PDGEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A      Y
Sbjct: 67  DICKQIRDVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +        + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++  
Sbjct: 127 LQPSQEEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQT 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ +     + + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIEHSPSTPEFLVTVKGLGYKF 230


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++   D+S I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNN-DISIILLDIMLPDISGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI      +
Sbjct: 64  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   I +    R   V GE   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 124 SEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 221


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium kansasii ATCC 12478]
          Length = 240

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +         G  +   ++          AR D   ++      G    
Sbjct: 16  ILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVM--MPGMDGF 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR  
Sbjct: 74  GVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R     I +  +  +    G+   L   E  +L Y + N G  ++K +I  
Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 236


>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 240

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++         G         E    +   A  D+  ++  L    G   
Sbjct: 5   ILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMTGIDF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
             L R       +P+I ++        +   + G DD V KP   RE++AR+ A      
Sbjct: 65  ARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRRLI 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S    E   +R+           +   L   E R+L ++M++  +  +++Q+   ++
Sbjct: 125 PEASAQVVEIHGLRLDPVNHRVTDGNKEIELGPTEYRLLHFMMSHTERTYSRSQLLDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LRK L+       + + R  GY  
Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALQWSGKDSWIQTVRGAGYRF 225


>gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
 gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +      E G +++       + + +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+ +     + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKLEV 229


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G                +  + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYM 232


>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 250

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGK 56
            ++++D  L+++  +    ++G  +           L S           S +   L+  
Sbjct: 21  ILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLMLP 80

Query: 57  GEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               L+L R+I    + +P++ +S   S    +   + G DD + KP   RE++AR  A+
Sbjct: 81  QVNGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRAL 140

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKT 171
            RR + ++                 E +  V      L  +E R+LE  M    +  ++ 
Sbjct: 141 LRRHRYNSIPQTPTLQLRDITLYPEECRVTVRGEEVNLSPKEFRLLELFMGYPRRVWSRE 200

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 201 QLIDQVWGA-DFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 249


>gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum
           V4]
          Length = 223

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G +++  +  +    +  +   D + ++  L G     + 
Sbjct: 4   LVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGP--DGIS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ +S     +  ++  +SG DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 121

Query: 122 SNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                        +   R+     +   L  +E  ILE LM   G+   +TQ+   ++  
Sbjct: 122 IGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      N+V+ +I KLRKK+        + + R +GY I+
Sbjct: 181 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 221


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +                   +             D+  ++           
Sbjct: 21  ILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVM--MPFVDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           +    IRA S VP++ I+        +  F  G D+ + KP    E +AR          
Sbjct: 79  DACERIRAKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDM 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ + +    + G + + +      V+G+   L   E  +L +L AN G+   +  +F  
Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G ++   E N+V+  + +LR+K+         + + R +GY ++
Sbjct: 199 VWG-YEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243


>gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
 gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
          Length = 228

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    S E  E    +A  D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWML--PGQSGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + IRA  +    P+I ++     +  +   ++G DD + KP   +E++ARV A+ RR
Sbjct: 63  ALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEMVARVRAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +          G+   L   E R+L + M +  +   + Q+   
Sbjct: 123 RAPHLAGEAVEIGTLALNPATHRVLASGQPIELGPTEFRLLFFFMTHAERVYTRAQLLDE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LR  L N    + V++ R  GY  
Sbjct: 183 VWGDH-VFIEERTVDVHIRRLRAALENSGNHERVETVRGTGYRF 225


>gi|315612769|ref|ZP_07887680.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314879|gb|EFU62920.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 218

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +      SS    +  ++          L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIEAADGQEALEKFSSHEVALVLLDI--QMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  D G   +   S             D+  ++  L   G    
Sbjct: 6   ILVVEDDQDINRLLCTILNDAGYFSQSAFSGSEAMLWAEKEGFDLVLLDLML--PGLTGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E    +R H  +P+I +S    ++  +     G DD + KP  ++E+        R    
Sbjct: 64  EFIAKVRQHGTMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVKK 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        R   G + +  +      +G    L  RE  IL  LM    +   + QI+ 
Sbjct: 124 FSAPPEKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIYQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D   ++N V  HIS LR KL      + + +   +G+ +
Sbjct: 184 HVWGE-DYFGDDNTVNVHISNLRSKLGKVSKQEFIKTVWGIGFKM 227


>gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 3/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    +    +P+I ++      + +   + G DD V KP   RE++AR+    R+   
Sbjct: 62  TVCTETKETQDIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRKSGC 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S + +E   + V       +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SPSASEICGLHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRARLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            E V +N +  +I +LR+K+  N      + + R  GY +  N
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPTSPQIILTVRGTGYRLGDN 224


>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    +       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L    + D+  ++  L         
Sbjct: 27  LVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVML--PKLDGFA 84

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 85  VCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  AE+  +             V ++ R    +GE   L   E  +LE L  + G+ V +
Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 225

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N A +     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EANDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 243

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 2/221 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +           G  +      E      +  R D+  ++  L G  G  V
Sbjct: 20  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R   A   +P+I ++        +   D G DD V KP     + AR+ A+ RR  
Sbjct: 80  CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRAP 139

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + + +     E  G    L   E RILE+ + +  +  ++  +   ++  
Sbjct: 140 PAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVW-E 198

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               VE   V+ HI +LR  L      D V + R  GY++D
Sbjct: 199 RGVHVEPRTVDVHIRRLRLILNGPGEADIVRTVRAAGYALD 239


>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
 gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D    ++        DG  +   ++ E    + S    D+  ++  +    G +V 
Sbjct: 9   LLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV A  RR + 
Sbjct: 69  RQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 ATVGERLEYLDIVLDAETHRVTRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALCQYGGEDPLRTVRGAGYAL 228


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           ++ R IR  SQVP+I +S    +   +   + G DD + KP   +E        +     
Sbjct: 65  QVCREIRTKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +    +  +       + +       +  GE   +P +E  +L +L A+      + Q+
Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ HI +LR+KL +      + +   +GY  + 
Sbjct: 185 LDQIWG-YEYIGDTRTVDVHIKRLREKLSDH-EKWRLATIWGIGYKFEV 231


>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
 gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N+         +   D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLML--PGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKKIREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + SN   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|37548744|gb|AAN07017.1| putative response regulator [Bacillus subtilis]
          Length = 245

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  L     +  
Sbjct: 19  LIIDDEKEILELIKTVLIREGIDRVITASTARDGLAQFHQENSDLVILDIML--PDGEGY 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A      Y
Sbjct: 77  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 136

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +    + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 137 LQPSQTGTVIKKGPFELNQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ N     D + + + LGY  
Sbjct: 197 VWGE-DFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 240


>gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 76/227 (33%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +          +G  +                  D+  ++  +    G +V
Sbjct: 13  ILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIEV 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV-------VNKPIHHREILARVA 113
            +  R       +P++ ++        +   D G D                + +L    
Sbjct: 73  CQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSAH 132

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                               +   ++          PR+E  +L +L ++ G+  ++ +I
Sbjct: 133 RYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQEI 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G     V+   V+ HI K+R+K+    G + +++ + +GY +
Sbjct: 193 LDEVWGRDVYVVD-RTVDVHIRKIREKI----GSEYIETVKGVGYRM 234


>gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
 gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +           D+  ++  +   G   L
Sbjct: 5   ILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMI--PGGSGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           ++ + ++  S    +P+I ++     +  +   ++G DD V KP   +E+    +     
Sbjct: 63  QIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  E   + +         Q +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 LSPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEEDGHDRMIQTVRGTGYRF 225


>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 233

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 8   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 66  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 126 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233


>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++             +      E    +    + D++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEK-DIALLILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +        V G    L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 DAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR K+ +K   + + +   +GY  + +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEVD 225


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  K    +
Sbjct: 7   ILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQK--DGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R IR    +P+I ++   S    +   + G DD V KP   RE        L R   
Sbjct: 65  EVCREIRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     +  + GP+ +  D      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 185 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
 gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
          Length = 235

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +               L      D+  ++  L    G +V
Sbjct: 3   ILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
               R         ++ ++        +    +G DD + KP    E           + 
Sbjct: 63  CTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +              +  +  +      E   L   E  +L   M+  G+  ++T
Sbjct: 123 RHGGTQNNVYETPHFIVDLDKYSAIQKTDNNTEEPLELTTLEFNLLSTFMSYPGRVWSRT 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+   ++G  D   +E VV++H+ +LRKK+         + +   +GY  +
Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPDTANPTYIKTVVGVGYKFE 232


>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
 gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
          Length = 241

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++          L
Sbjct: 16  ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIM--MPKLDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 74  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240


>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 237

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    + +  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQML--PEIDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+ S+ P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 SNNRAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                                  +          G+   L  RE  +L YL  +  + + 
Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 232


>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 233

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +    + +    +       +  ++      G   LE
Sbjct: 7   LVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVM--MPGMNGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARVA 113
           L R IR  S +P+I +S   +    +     G DD V KP +          +       
Sbjct: 65  LCRKIRESSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQL 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + + +      + +  D     ++GE   L   E  IL  L ++ GK  +  +I
Sbjct: 125 NPNSTNEFAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTDEI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F  ++         N V  HI +LR K+  ++     + +   +GY I+ 
Sbjct: 185 FEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDQRENKIITTVWGVGYKIEK 233


>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D A +           G   +              A+ D+  ++  L        
Sbjct: 5   IAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVML--PDADGF 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR   A S+ P++ ++        +   + G DD + KP   RE++ARV A  RR
Sbjct: 63  ELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLRR 122

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++         GP R+    R   + G    L   E  +LEY + + G+  ++ Q+  A
Sbjct: 123 EEMDAEPGAVGIGPFRLDRTARRVYLNGREISLTSTEFNLLEYFLTHPGRAYSRDQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++G     V    V+ H+ +LR+++         + + R  GY  + 
Sbjct: 183 VWGEQRY-VTPRTVDVHVRRLREQIEEQPDAPRYLTTVRGFGYRFEE 228


>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
 gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E      +    D+  ++  L       LE
Sbjct: 5   LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 63  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 122

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E             +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 AKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228


>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D            ++  N+ +       +   D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLML--PGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    VP++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EVCKHIREKKDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                             +    R   V  E      +E  +L +L  N      K ++F
Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 RKIWNM-DSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRF 227


>gi|17351926|gb|AAL38199.1|AF319443_1 putative response regulator RR23 [Listeria monocytogenes]
          Length = 225

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ +    Y    
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFQFVRCYGVPI 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR-RERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T    +          G    +   +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 KQAKSKSTSETLLSIKKATALKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +        G +G ++           L  + R D+  ++  L        
Sbjct: 9   ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVML--PKLNGT 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S+   +   DSG +D + KP    E+LAR+    R    
Sbjct: 67  EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 126

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++          + +D R   ++G+   L +RE  +L +L+ N+G  +++  +   ++G
Sbjct: 127 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A + N V+ +I  LR K+        + + R +GY I
Sbjct: 187 -FDFAGDTNAVDVYIRFLRGKIDEVFNLKFIHTVRGVGYVI 226


>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 235

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +           + +    D+  ++  L    +  +
Sbjct: 6   ILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIML--PYQDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 64  EVCREVRKKFDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S                   D      +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 AVWG-YDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYL 228


>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 246

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +          +  +   D+  ++          L
Sbjct: 11  ILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDI--QMPRMDGL 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113
              R IRA  S  P++ ++   ++   +   D+G DD + KP    E+ AR+        
Sbjct: 69  TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128

Query: 114 ----AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               A        ++      +R+    R+         L R E  +LE  +++  + + 
Sbjct: 129 YASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLT 188

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 189 REQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 238


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++   +    +G  +   +       +      ++  ++          L 
Sbjct: 10  LVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVM--MPRLDGLT 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
             R +RA     P++ ++   ++   +   D+G DD + KP    E        +     
Sbjct: 68  ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G +R+ +  R+    GE   L R E  +LE LM +  + + + QI
Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S ++G FD     N ++ ++  LR+K         + + R +GY +
Sbjct: 188 LSEVWG-FDFEPSSNSLDVYVMYLRRKTEAAGRSRLIHTVRGVGYVL 233


>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 250

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54
            ++++D  +++D  I    ++G    G +       L  S        R D+  ++  L 
Sbjct: 21  ILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLMLP 80

Query: 55  -GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
              G  +  L R     + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  QISGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   ++  A            +      V+ E   L  +E R+L+  M+   +  +
Sbjct: 139 ALIRRQGFTSLAAAPVRKFRDVLLYTQECRVTVRHEEINLSPKEFRLLDLFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249


>gi|149021563|ref|ZP_01835618.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930259|gb|EDK81244.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP23-BS72]
          Length = 218

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKATKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                     D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLML--PGMGGND 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE+ AR+ A+ RR + +
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEA 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +           PI++  D     V G+   LP +E  +LEYLM NRG+ + + Q+   
Sbjct: 123 ESETSLDGALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ +     + + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEDDPAKPERLVTVRGLGYKLE 227


>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +      +    L      D+  ++           
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQLPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236


>gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044]
 gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
 gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae]
 gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 230

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +    + E    +      ++  ++  L   G    
Sbjct: 5   ILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVML--PGIDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ RI+R    ++ ++ ++        +     G DD + KP +  E+  R+ ++ RRL+
Sbjct: 63  EVCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +         P ++ +  R      E   L   E +I++  M N GK + + +I + 
Sbjct: 123 PEEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G  D   +  +V+ +I +LR K+         +++   LGY 
Sbjct: 183 VWGE-DFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGYR 225


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V  N+     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +                + D+  ++  L   G    
Sbjct: 6   ILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLML--PGLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S  P+I ++    L+  +     G DD V KP    E+LAR+ A+ RR++ 
Sbjct: 64  QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +               +    D     +  ++  +PRRE ++L+YLM    +   + ++
Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
              I+G +D   E+ V++ +I +LRK+L++K      + +   +GY  + 
Sbjct: 184 IEGIWG-WDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++            +      +      +    D+  ++  L        
Sbjct: 3   ILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGL--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           E+ R IR  S+VP++ ++        +   + G DD V KP   RE++AR+     R   
Sbjct: 61  EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSRA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +        + G+   L  RE+ IL+ L    G+  +K ++   I+G 
Sbjct: 121 NGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWGA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V +  ++SH+  LR K       + +++    G  +
Sbjct: 181 G-SQVSDRTLDSHLRNLRGKFSEAGNPELIETVHGAGIRL 219


>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
          Length = 237

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIML--PKRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V
Sbjct: 63  EVCREIRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   AE               +  D      + E   L  RE  +L YL  + G+ + + 
Sbjct: 123 AAPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLML--PGMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + +
Sbjct: 64  VARAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  ++     +       S   D+  ++  L   G    E
Sbjct: 5   LIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLML--PGLDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IRA  ++P++ +S   +    +     G DD + KP    E++ARV A   R    
Sbjct: 63  ICRRIRATKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINRYDRL 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +  E   +++ S  R     G+   L  +E  IL +L  +  K  AK  +F 
Sbjct: 123 AGVSAANRDIIEVRELKIDSSSRRVWSYGKERTLTAKEFDILRFLAEHPNKVYAKEDLFK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++GL +   + + V  HI  +R+K+  +      +++   +GY  
Sbjct: 183 EVWGL-ESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRF 227


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G                     D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++          G  +      E    +      ++  ++           
Sbjct: 6   ILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLM--MPKLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            + + +R  S VP+I ++    +   +   + G DD + KP   +E+ AR+ ++      
Sbjct: 64  GVCQELRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDK 123

Query: 116 --YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++  +        E   L   E  +LE L++  G+  ++  I
Sbjct: 124 ASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATI 183

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY  
Sbjct: 184 LQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 232


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A   D    ++  N           +  D+  ++  L        
Sbjct: 4   ILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIML--PKISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            +  +IR  S VP+I ++     Q  +  FD   DD ++KP   + +L R          
Sbjct: 62  AVCEMIRKESHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNE 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + N       I++  +     V  +   L  +E  +L  L+ N+G  + +  I + 
Sbjct: 122 SFANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G +D   +E VV++HI  LR+KL    G D + + R +GY ++ N
Sbjct: 182 LWG-YDFYGDERVVDTHIKNLRRKL----GVDYIQTIRKVGYKLEGN 223


>gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 240

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A +++       + G +     +      + S+ + D+   +  +        
Sbjct: 14  ILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPM--MDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           EL + IR  S+VP + +S        +     G DD V KP +        + +  R+  
Sbjct: 72  ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  K ++   + G + +          G+   +   E +IL  LM + G+   K  I+
Sbjct: 132 FSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIY 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++G  +   +EN++  +ISKLR+K+ +       + + R LGY  + 
Sbjct: 192 EHVWGQ-EYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239


>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 239

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +             D++ ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVML--PDMDGF 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            + R +R A    P++ ++     +  +     G DD V KP    E++AR+       +
Sbjct: 71  TVTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   +       + +  D  +    G    L   E ++L YLM N  + ++K QI   +
Sbjct: 131 PMDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVL 233


>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
 gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    A    +G+ +    + E           D+  ++  +         
Sbjct: 6   LMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPL--MDGWT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++     +  L  F  G D  V KP+  +    +I A +   Y  
Sbjct: 64  VCRELRKISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  +G + ++ GE   L  +E   L YL+ N+   +++ +I  AI+
Sbjct: 124 EINQVKDNTYDGLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDAIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +   V++H+ +LR+KL  K     + + R +GY  + 
Sbjct: 184 GI-DYYGDLRTVDTHVKRLREKLGVKSY--LITTVRGVGYKFEV 224


>gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 228

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +   +      E            +  I+  L        
Sbjct: 3   ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLML--PKMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117
            L   IRA S+VP+I +S   +    +  F  G DD V KP         + A++    R
Sbjct: 61  ALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYER 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +R +   + +   GR    +GE   L  +E  +L +L  + G+   K ++++A+
Sbjct: 121 SYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +       +   V  H+  +R KL++       +++   +GY  
Sbjct: 181 WNGDGF--DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222


>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 229

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLML--PGMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR +  
Sbjct: 64  VARAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDV 123

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S+           L  + R D+  ++  L   G    
Sbjct: 21  ILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLML--PGIDGR 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           ++ R+IR  S  P++ ++   S    +  F  G DD V KP   RE+ AR+ A       
Sbjct: 79  DVCRLIRKWSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + +F D      +G    L  RE  +L  L+   G+   + ++   ++G
Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVWG 198

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                V+   V+ HI ++R+ L     G + + +   +GY  
Sbjct: 199 QD--VVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRF 238


>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 233

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 235

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    + +  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQML--PEIDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+ S+ P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +   +                      G+   L  RE  +L YL  +  + + + 
Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 225

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
 gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
          Length = 228

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R +R   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 65  EVCRRVRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++ A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 ESSDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225


>gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 229

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +           ++  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++           E   +   E ++L + M ++ +  ++ Q+ + I+
Sbjct: 125 PTALDDTIDVQGLKLDPVSHRVTSNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEASGHEKLIQTVRGAGYRF 225


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++ + D+S I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DISIILLDIMLPDISGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV    +     
Sbjct: 64  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 124 SEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222


>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 235

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N                    +       GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYL 229


>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
 gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
          Length = 232

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +  ++    + +           D++ ++  L        
Sbjct: 5   ILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           ++ + IR +   P+I ++        +     G DD + KP            ++     
Sbjct: 63  DICQKIRENHHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVTK 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + +K++ N    G + V  +  +  +  E   L   E  IL  L  NRGK V   ++
Sbjct: 123 YNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEKL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++G        N +  HI  LR K+ +       + +   +GY I+
Sbjct: 183 FEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGYKIE 231


>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 257

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 20/237 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA------------REDVSAIE 50
           +L++D  L+++       D+G  +   ++ +    +                  D+S I 
Sbjct: 21  LLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISLII 80

Query: 51  AFLIGKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L+  G   L+L R++      +P++ +S   +    +   + G DD + KP   RE++
Sbjct: 81  LDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRELI 140

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP-----RRERRILEYLMANR 164
           AR  A+ RR +  +   E   +R        +               +E +ILE L++  
Sbjct: 141 ARCRALLRRCQSQDKPNEKSILRFADIALHTDECRVFLGSTEVSLSPKEFKILELLLSQP 200

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  ++ QI   ++G +D   +   V+ HI  LR+KL    G    + + R  GY +
Sbjct: 201 KRVWSRNQIIDQVWG-YDFMGDNKTVDVHIRWLREKLEENPGQPKYLKTVRGFGYRL 256


>gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 225

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N A T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EANDAATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222


>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 230

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
 gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       ++   +      +    L  + +  +  ++           
Sbjct: 5   ILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIM--MPKIDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I +S   +    +   + G DD + KP +  E +ARV +  RR   
Sbjct: 63  HVLQQIRKESNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRRFYS 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +             +  D    +   ++  L   E RI+E LM + GK   K QI+ 
Sbjct: 123 LGTKVVQEGNLAVRDLVLNQDACTLKKGDKIIQLTSVEYRIMELLMKHPGKVFTKQQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +G  D  V +N +   ISKLR KL +      + + R LGY ++ 
Sbjct: 183 HGWGE-DYIVADNNIMVCISKLRAKLDDNPSA-YIQTIRGLGYRLEK 227


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCKQLRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDS 122

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                         P+R+  +    +V GE   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 ELDVAQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +    + + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIETDPAKPEHLVTVRGLGYKLE 228


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVML--PDMDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++        +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  TITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +   T  +       D  +    GE+  L   E ++L YLM N  + ++K+QI   +
Sbjct: 128 SGEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +D   + ++VES+IS LR+K+        + +KR +GY
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKVDRPEWPALIQTKRGVGY 227


>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
 gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 226

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                S  + D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R+IR  S VP+I ++        +   +SG DD VNKP   +E++AR+ A  R    
Sbjct: 63  DICRLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         +       +  G    L   E  +L  L     +   + ++   ++G 
Sbjct: 123 EPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 225

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFSVKLIHTVRGVGYVLE 220


>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 243

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
 gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
          Length = 225

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  +
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++ A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EASDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+         + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEEIPSSPTLIRTVRGVGYRLD 222


>gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 225

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E         R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ +       +          G    L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 ESSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLD 222


>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 235

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +   ++ +      S+   D+  ++  L    G +V
Sbjct: 4   ILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDGMEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R      ++ +I ++        +   + G DD + KP   RE++AR+ AI+RR++
Sbjct: 63  CRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFRRME 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   + +     G  ++     + + + E   L  +E  +L YL+ N+G+ +++  
Sbjct: 123 ELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLSRNL 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G ++ A +   V+ HI +LRKK       + + + R +GY  
Sbjct: 183 LLEKIWG-YEYAGDTRTVDVHIRRLRKK----SSSEYIKTVRGVGYKF 225


>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 248

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  ++   +      + ++   D+  ++  L        +
Sbjct: 17  LVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLML--PDMDGWQ 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR    V ++ ++     +  +     G DD + KP    E+LARV ++ RR  ++
Sbjct: 75  VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +         F        GR+  +        ++E  +   L  +  +  ++ ++ + 
Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           I+G  +   E  VV++HI  +R+K +    G++P+ +   +GY  +
Sbjct: 195 IWG-DEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFN 239


>gi|225572481|ref|ZP_03781345.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040053|gb|EEG50299.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
          Length = 295

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G       +G  +    SL     L    + D   ++  L       +
Sbjct: 69  ILIVEDDRGLAEGIKFYLEKEGYRVVMAGSLGGGRVLYRQEKPDAVLLDLNL--PDGDGM 126

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYRR 118
              R IR +SQVP++ ++        +   ++G DD + KP     +  R+       ++
Sbjct: 127 SFCREIRKNSQVPILMVTARDMETDEVMGLETGADDYLTKPFSLTVLRTRLRKLLERQQK 186

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V N+  ++G I +           E   L   E R+L   + N  + + K QI + I+
Sbjct: 187 GGVENHILKSGEIFLDESRTSVRKGAESLNLSMTEYRLLRLFLKNPNQVLLKEQILAVIW 246

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                 V+EN +  +I +LRKK+  +      + +   +GY  +
Sbjct: 247 DSESNFVDENTLAVNIRRLRKKIESDPSNPMYLKTIHGMGYLWE 290


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE              
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     +  N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 243

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54
            +L++D    +D        DG  +      +    +  ++R        D+  ++  L 
Sbjct: 10  ILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML- 68

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILA 110
                   +   IR  S VP+I ++   +    +   + G DD V KP  +R     + A
Sbjct: 69  -PRLDGTGVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +                G +R+  +  +  V GEV  +P RE  +LE  + + G+ + +
Sbjct: 128 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +QI   ++G  D   +   ++ HI +LR ++  +      + + R LGY +D
Sbjct: 188 SQILERLWG-PDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLD 238


>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 236

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQR--DGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ++ E                 D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 227

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 65  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N +       +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 125 EANDSAAFGSLLIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225


>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHSQ 122

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +  T            +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
 gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G +       +    +  S   D+  ++           
Sbjct: 4   ILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIM--MPTMDGW 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA++++PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G I +           +   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGYSQTIQLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D A +   ++ HI +LR++      F  +++ R LGY ++ +
Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFALIADF-HIETIRGLGYRLEVD 223


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     +    +    +  +  ++  L   G    
Sbjct: 4   ILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLML--PGMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ + IR  S +P++ +S        +   + G DD + KP   R     + A++     
Sbjct: 62  EICQNIRIKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +    +   IR+++     E  G    L R E  +L +L  N  +  ++ Q++  I
Sbjct: 122 FNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSREQLYERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G FD   + N V   I++LR+K+ +       + +   +GY  +
Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225


>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  ++     +      +S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLN--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRAV 120

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                R+         L R E  +LE LM N  + + +++I   
Sbjct: 121 PDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +  E        +  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++   ++   +   + G DD + KP   +E+ AR+A I RR   
Sbjct: 66  GVCQELRKESDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFH 125

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   T           ++ ++ R      +   L   E  +LE L+ N GK  ++ ++
Sbjct: 126 KTSVNTTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEM 185

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G +    ++  VV+ HIS+LR K+ +     + + + R  GY  
Sbjct: 186 LQLLWGCVPGLHLDTRVVDVHISRLRTKVEDDPNLPELIITARGSGYFF 234


>gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 245

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 24/240 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G  +E   +      +      D+  ++      G    
Sbjct: 6   IIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIM--MPGMNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108
           +    IR  S  P++ +S           F SG DD + KP  + E+             
Sbjct: 64  QTCLEIRKQSNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRRYQI 123

Query: 109 --------LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                         I         R     + +  +      +G    L   E  +L  L
Sbjct: 124 YKGKENSETVSEQVICTGNTQEKQRLHFHDLEIDEEQEAVYAEGRQIELTDTEYAMLHLL 183

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  R +  +  +++ A++         N +  HI  LRKK+  +      + +    GY 
Sbjct: 184 IKYRHQIFSAERLYEAVWDEPYYYGANNTIMVHIRNLRKKIEKDAKNPVLIKTIWGKGYR 243


>gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 228

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M +L+DD   V D        +G  +    +      +    + D+  ++  L       
Sbjct: 4   MLLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWML--PEMSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           L++ R +R    V +I ++        +   + G DD + KP   RE    +  V    +
Sbjct: 62  LDVCRELRRMGSVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRTQ 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +           +   L   E +IL  L +  G   ++ Q+  + 
Sbjct: 122 GGGDEPSVLRRGDLTIDETKFRVWKGDQEIVLTPTEFKILVTLASRPGTVYSRLQLLQSA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            G       E  V++H+S LRKK+ +       + +   +GY  
Sbjct: 182 LGET-YLNYERTVDTHVSHLRKKIEDDPAEPRYIQTVYGVGYRF 224


>gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22]
 gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 239

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++            ++ R D+  ++  L   G   LE
Sbjct: 2   LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLML--PGMDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRLK 120
           + R +RA   VP+I ++        +   + G DD V KP   RE  +         R  
Sbjct: 60  VCRRLRARGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     +R+    R     G    L  RE  +L + + N G+  ++  +   ++G 
Sbjct: 120 SDARQLTAAGLRLDPAARHATRDGAELALTLREFDLLAFFLRNPGRAHSREDLMREVWGW 179

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                + + V  H+ +LR K+  +      + +   +GY  +
Sbjct: 180 D--FGDLSTVTVHVRRLRGKIEHDPAQPRLIRTVWGVGYRFE 219


>gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL
           J1-208]
          Length = 225

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +    +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA    +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR           + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEDKDGIRIVTVRGVGYKLEE 223


>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
 gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  F + +       S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  HICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMR 122

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN  E   I V                  + G+   L   E  IL YL  ++GK V   
Sbjct: 123 YNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K+         + +   +GY+I+ 
Sbjct: 183 ELFEAVWGEKYLD-NNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233


>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +  ++G+ +               AR D+  ++  L   G   +E
Sbjct: 6   LVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVML--PGLDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IRA S VP++ ++        +   +SG DD V KP   +E++ARV A   R  + 
Sbjct: 64  VCRRIRAESGVPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGYK 221


>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
 gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
          Length = 226

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I     +G  +           L       +  ++  L   G   L
Sbjct: 6   ILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWML--PGYDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            + R IR  S VP+I I+            D G+DD + KP    E    +  +     R
Sbjct: 64  TVLRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRINR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        GP  +        V G    L  +E  ++  LM + G   ++  + + I+
Sbjct: 124 EQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDLLNQIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D A + N V+ +I  LR KL +    + + + R +GY +
Sbjct: 184 G-YDFAGQTNTVDVYIRALRNKLGDY--RNLIRTVRGVGYVL 222


>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
 gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
          Length = 236

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   A     G  +      +    +          ++  L   G    E
Sbjct: 10  LIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLML--PGMTGEE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+VP+I ++     +  L+  D G DD V KP   +++ AR+ AI RR    
Sbjct: 68  ICQAIRRQSRVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSA 176
                       +D +      EV        L   E +IL  ++ +  K  ++  +   
Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI--DWN 223
           ++G  D    + V+++HI  LRKKL  N      + +   LGY    + N
Sbjct: 188 VFG-PDFDSYDRVIDTHIKNLRKKLETNPKNPVYIKTVYGLGYKFGGEEN 236


>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLML--PGMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + +
Sbjct: 64  VARSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 240

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    DG  +                  DV  ++  L   G   +E
Sbjct: 16  LVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLML--PGLDGVE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S   +I ++        L     G DD + KP   RE++ARVAA+ RR +  
Sbjct: 74  VCRRLRAFSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAMRRRPRQP 133

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R E    R          R+  +     PL R E  +L  L       +++ Q+ +A+
Sbjct: 134 RIRPEPALRRFGPLEVDVPAREARLDEVPVPLTRTEFDLLAVLSGRPNVALSRAQLITAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G      +E +V+ HI  LR+KL +       + + R +GY +
Sbjct: 194 WG-DGWVGDERLVDVHIGHLRRKLGDGPARPRFILTVRGIGYRM 236


>gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++        +G ++    +      +       ++ ++      G    
Sbjct: 3   ILIAEDEQDIRNLLELHLLKEGYTVFKAVNGLEALDILKKEHIHLALLDVM--MDGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +++R  SQ+P+I ++        +     G DD V KP    E++AR+ +  RR   
Sbjct: 61  NLLKMLREWSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCYK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   E   I      ++     +   +     +E +ILE LM+N G+   K QI+  ++
Sbjct: 121 YSGENELIKIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
              +   ++N +  HIS LR K+         + + R +GY  + 
Sbjct: 181 -QEEYLGDDNTIMVHISHLRDKIEEDPKNPCKIKTIRGIGYRFEK 224


>gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 231

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E         R D+  ++  L   G    
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVML--PGIDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 68  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ +       +          G    L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 128 ESSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLD 228


>gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB,
           [Edwardsiella ictaluri 93-146]
 gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative
           [Edwardsiella ictaluri 93-146]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++D    +   +G       S +           D+  ++  L  G G ++
Sbjct: 5   ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGIQL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +        V      +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMALEESISLQGLSLDPISHRVTVHDSAVDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEGSGHDRMVQTVRGTGYRF 225


>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
 gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
          Length = 239

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +           G  +    S      +    R  +  ++  L    G  V
Sbjct: 11  ILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFDV 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
           LE  R   +  +V ++ ++        +     G DD + KP    E++ RV        
Sbjct: 71  LEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRTG 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               VS +    GP+ +        V G+   L   E ++L  L   RG+   +  +   
Sbjct: 131 SATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLET 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++      ++   V+ H+ +LR KL      + +++ R  GY +
Sbjct: 191 VW-EAAPDIQTRTVDMHVQRLRSKLGAAG--ELIETVRGFGYRL 231


>gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis
           Et1/99]
 gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 235

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I                +           D+  ++  L   G   
Sbjct: 9   LILIVEDEPKLGQLMIDYLQAANYHTHHLLRGDEVVDWVKLHAPDLVLLDLML--PGMDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R+ S++P++ ++        L   + G DD + KP   RE++ARV AI +R +
Sbjct: 67  LSVCRELRSFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKAILKRCQ 126

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +       +V           +   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RGSQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLEALDAEQPFIRAVYGIGYRWE 228


>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 230

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +          +G  +   +              D+  ++  L   G   L
Sbjct: 11  ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWML--PGISGL 68

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +       D+G DD V KP   +E+L+R+    R+ +
Sbjct: 69  EICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPR 128

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +       + +    R+         L  +E  +L YLM +  + + + QI   ++G
Sbjct: 129 RSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N++E +I  LR K+        + + R +GY +
Sbjct: 189 C-DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228


>gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 227

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G + E                     ++  L   G    
Sbjct: 6   ILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLML--PGLDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   +    P+I ++        +   + G DD V KP   RE++ R+ A+ +R
Sbjct: 64  EVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123

Query: 119 LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 R +        V        + GE   L   E R+L  L  + G+ + + ++ +
Sbjct: 124 HAPEQERRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G ++       V++HI +LR+KL        +++ R +GY  
Sbjct: 184 SVWG-YEFEGYARTVDTHIRRLRQKLG--SCARMIETVRGVGYRF 225


>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G  A   + G      +  +           D+  ++  L   G+  +
Sbjct: 7   ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIML--PGKDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + +R+ SQ+P+I ++        L   + G DD + KP   RE++ARV         
Sbjct: 65  EVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNT 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + R   GPI +  D R+  V G    L   E  IL+ +M+   +  ++ ++     
Sbjct: 125 PQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAI 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           G       +  ++SHI  LRKK++      + + S    GY  +
Sbjct: 185 G-SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ A                  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
 gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
          Length = 241

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +              A   +  ++  L   G   + 
Sbjct: 17  LIVEDEPKLGQLLVDYLQAAGYRTQWLTKGTEVIDAVRQAPPSIILLDLML--PGLDGIS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 75  ICREIRRFSNVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 134

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +A       +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 135 PEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 234


>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
 gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
          Length = 241

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++          L
Sbjct: 16  ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIM--MPKLDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E++       R +  
Sbjct: 74  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTK 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240


>gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
 gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
          Length = 236

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E         + ++  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + + IR+    VP++ ++        +   + G DD + KP   RE           ++ 
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +            IR+  +  +     E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VNEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator
           [Burkholderia vietnamiensis G4]
 gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia vietnamiensis G4]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|331266799|ref|YP_004326429.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683471|emb|CBZ01089.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 218

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKFNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKSSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L   G   +
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLML--PGMDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++ R +R H  Q P+I ++        +   + G DD V KP               R+ 
Sbjct: 63  DVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQ 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                    R +        G +   +D       G    L  RE  +L Y+  N GK +
Sbjct: 123 RGVAGTPESRPQEDKQGLRVGDLFFDADMYTAYKNGTPLDLTHREYELLYYMAKNAGKVM 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            +  +  A++G F+   +   V+  I +LR+K+       + + ++R LGY
Sbjct: 183 TREHLLQAVWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGY 232


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++    +        +  R  +  ++  L   G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVML--PGLSGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   Q  P+I ++   S+   +   D G +D V KP    E+LAR+    R+  
Sbjct: 64  EVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNG 123

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +T             R+     +   L  RE  +L Y++ +  + + + QI ++
Sbjct: 124 TKTEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTVRGVGYAI 226


>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
 gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        +G  +    S +    L    R D+  ++  +    G +V 
Sbjct: 9   LVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + S+        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 ATVGIRLEFDDIILDSETHKVSRDDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGEDPVRTVRGAGYAL 228


>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
 gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
 gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 230

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
 gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
          Length = 226

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L G +G  +               A  D+  ++  L   G+   
Sbjct: 4   ILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGADLVLLDLML--PGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKQIRQRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRRRAE 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +     P+R+  +     V GE   +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKVEPDPSAPQHIVTVRGLGYKFE 225


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D  +++D       ++G S+    + E    +      DV  ++  L       + 
Sbjct: 5   LVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLML--PDMDGMG 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LAR 111
           +   IR  S VP++ +S    +   +    +G DD + KP    E+              
Sbjct: 63  VCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFS 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                         A+  PI++ S+ R   V+G++      E  +++  +++ GK  ++ 
Sbjct: 123 ATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++ + I G FD  V +  ++ HI  LRKK+  N      + +    GY 
Sbjct: 183 ELINTIRG-FDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYK 230


>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
          Length = 228

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    +D        +G  +    + +    +      D+  ++  L    G +V 
Sbjct: 8   LVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIEVC 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV A  RR++ 
Sbjct: 68  RRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRVRP 127

Query: 122 SNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +     +   ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 128 ATVGQQLRYDDILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 188 R-DIYVDTRTVDVHIGRLRKALCQHGGTDPVRTVRGAGYAL 227


>gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 301]
 gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 2457T]
 gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5
           str. 8401]
 gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 301]
 gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 2457T]
 gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5
           str. 8401]
 gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri
           2002017]
 gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str.
           2457T]
 gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671]
 gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71]
 gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71]
 gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6]
 gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218]
 gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304]
          Length = 240

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S VP++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|311896323|dbj|BAJ28731.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   ++
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPFFVADGDKALAAFRETKPDLVLLDLML--PGRDGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S +P++ ++        +   +SG DD V KP   +E++ARV A  RR +  
Sbjct: 64  VCRQIRAESGIPIVMLTAKTDTVDIVVGLESGADDYVTKPFKPKELVARVRARLRRAEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G   + +G   PL   E  +L  L     +   +  +   ++G +
Sbjct: 124 TPEQLTIGDLVIDVAGHSVKREGRGIPLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYK 221


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     + +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR    
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEP 122

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  E        GP+R+  +     V G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 GSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +             D++ ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVML--PDMDGF 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 71  TVTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      +       D  +    G V  L   E ++L YLM N  + ++K QI   +
Sbjct: 131 PLEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVL 233


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L       +
Sbjct: 6   ILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIML--PKRDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL V
Sbjct: 64  EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNV 123

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                E                 D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 124 PAQIEEAQAETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPLWIVTRRGVGYYL 231


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F  +G  +      +    L +    D+  ++  + G  G +V
Sbjct: 6   LLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGTSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  +A + VP+I ++        +   ++G DD V KP   RE++ARV A+ RR++
Sbjct: 66  CRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRRVR 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G + +         + +   +   E R+L + M + G+  ++ Q+  A++
Sbjct: 126 PALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G     +E   V+ HI +LR+ +      DPV + R  GY+++
Sbjct: 186 GSG-SDIELRTVDVHIRRLRQAIAIPGAPDPVRTVRSAGYALE 227


>gi|295838626|ref|ZP_06825559.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74]
 gi|295827102|gb|EFG65240.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74]
          Length = 231

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E         R D+  ++  L   G    
Sbjct: 10  LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLTKLREERPDLIVLDVML--PGIDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 68  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ +       +          G    L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 128 ESSDSAAFGNLVIDRSAMTVAKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLD 228


>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +           L    + D++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDK-DIALIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  QVCREVRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 124

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I +       ++ G    L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 AVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG--EYIKTIWGMGYKFEV 224


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G  +   +  E       +   D   ++  L        
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +      +           GEV  L   E  ILE L+ + G+  +K ++     G  
Sbjct: 123 IPAQRPIIEHQGILVDESLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGRK 182

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
                +  ++ HIS LR KL +   G   + + R  GY  +
Sbjct: 183 -YTAYDRSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMFN 222


>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 245

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +                   +             D+  ++           
Sbjct: 21  ILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVM--MPFVDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           +    IRA S VP++ I+        +  F  G D+ + KP    E +AR          
Sbjct: 79  DACERIRAKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDM 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ + +    + G + + +      V+G+   L   E  +L +L AN G+   +  +F  
Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G ++   E N+V+  + +LR+K+         + + R +GY ++
Sbjct: 199 VWG-YEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243


>gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
 gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  + G  G +V
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   VP++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 65  IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMATEDIIEMNGLVLDPTSHRVTSNETPIDMGPTEYKLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     + + R  GY  
Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKALEQEGHDKMIQTVRGTGYRF 225


>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
 gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRQVRDEKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE  P   +E  +L +L ++      K ++F
Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRF 227


>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +            +S   D+  ++          L
Sbjct: 10  ILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDI--QMPRMDGL 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A S  P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 68  TAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSA 127

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   A              R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 128 YAAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTRE 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 188 QILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGESRLVHTVRGVGYVL 235


>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 230

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +      + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN  +                +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231


>gi|291549838|emb|CBL26100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 228

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G S E   S    + L +      + +   L+  G    
Sbjct: 4   ILIVEDDTNINNLLQEALSKEGYSCEQAFSGTEAKLLLNMQEHGYALVLLDLMLPGIPGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR    +P+I ++   SL   ++   SG DD + KP   RE+LARV    R  + 
Sbjct: 64  AVLEEIRKKGNLPVIVLTAKDSLDEKVEVLTSGADDYITKPFEIREVLARVQVQLRHKEE 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +               Q E+       + ++E  ILE L+ N  +  +K  IF  
Sbjct: 124 KEAEEQHTLSFKDMLLNRDTFQVEIDGKILPKITKQEFAILELLLRNPKQVFSKEDIFEY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 184 AWDEP-YMGETKTLDVHISNIRKKIKQVTSEEYIETVWGIGYRL 226


>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +++G        G  +    + E    L    R ++  ++  L   G   ++
Sbjct: 5   LLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLML--PGINGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R IR  SQVP+I ++        +   ++G DD + KP     I AR+       +  
Sbjct: 63  VCRRIRETSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRRLKGP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +   G      GE   L   E ++L +L A+  +  ++ Q+   ++ 
Sbjct: 123 GGLPGVEHHGELAIDRAGLTVAKNGERVALAPSEIKLLLHLSASPEQVFSRQQLLEYVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                 +  +V++ + +LR K+ +       + + R  GY  
Sbjct: 182 EHSYHADARLVDACVRRLRNKVEDPDGHPRYIQTVRGFGYRF 223


>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis
           JLW8]
 gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G +     S E    L      D+  ++  L   G   L
Sbjct: 5   ILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWML--PGMNGL 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +++      +P+I ++        +   + G DD V KP   RE+ AR+ A    
Sbjct: 63  ELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +++++  E   +R+           +   L   E R+L + M N  +   ++Q+   
Sbjct: 123 RAPQMTDDPIELNGLRLDPTTHRVTGNQKTIDLGPTEFRLLHFFMTNSERVHTRSQLLDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LR  L      D + + R  GY +
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRNALSASGHEDLIQTVRGAGYRL 225


>gi|148998276|ref|ZP_01825745.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP11-BS70]
 gi|149010780|ref|ZP_01832151.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP19-BS75]
 gi|168485715|ref|ZP_02710223.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168576498|ref|ZP_02722372.1| VncR, response regulator [Streptococcus pneumoniae MLV-016]
 gi|307067219|ref|YP_003876185.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307126802|ref|YP_003878833.1| VncR, response regulator [Streptococcus pneumoniae 670-6B]
 gi|147755919|gb|EDK62963.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP11-BS70]
 gi|147765261|gb|EDK72190.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP19-BS75]
 gi|183571082|gb|EDT91610.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183577727|gb|EDT98255.1| VncR, response regulator [Streptococcus pneumoniae MLV-016]
 gi|301793794|emb|CBW36185.1| two-component system, response regulator [Streptococcus pneumoniae
           INV104]
 gi|306408756|gb|ADM84183.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306483864|gb|ADM90733.1| VncR, response regulator [Streptococcus pneumoniae 670-6B]
          Length = 218

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  N+      +      DV  ++  L   G     
Sbjct: 4   LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVML--PGMDGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + + IR+ S+ P++ ++    +   +  F+ G DD + KP    E+LAR+     +    
Sbjct: 62  VIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R     + +   GR          L  +E  +L  LM  RG+ +++T I S ++G+ 
Sbjct: 122 ESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWGV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +           D+  ++  L   G   +
Sbjct: 6   ILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIML--PGINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR HS VPLI ++    +   +   DSG DD V KP    E    +       ++
Sbjct: 64  EICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +         + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   ++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +    + NVV+ +I  LR K+ +      + + R +GY  + 
Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCEE 226


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +           D+  ++  L   G   +
Sbjct: 6   ILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIML--PGINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR HS VP+I ++    +   +   DSG DD V KP    E    +       ++
Sbjct: 64  EICRKIRQHSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +         + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   ++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +    + NVV+ +I  LR K+ +      + + R +GY  + 
Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCEE 226


>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 230

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +      + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 2/221 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +           G  +      E      +  R D+  ++  L G  G  V
Sbjct: 16  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R   A   +P+I ++        +   D G DD V KP     + AR+ A+ RR  
Sbjct: 76  CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRAP 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + + +     E  G    L   E RILE+ + +  +  ++  +   ++  
Sbjct: 136 PAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVW-E 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               VE   V+ HI +LR  L      D V + R  GY++D
Sbjct: 195 RGVHVEPRTVDVHIRRLRLILNGPGEADIVRTVRAAGYALD 235


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++        +  ++    +      + +    D++ ++      G    
Sbjct: 3   ILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIM--MPGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           ++ + IR  S +P+I I+     +  +     G DD + KP    E+         RV  
Sbjct: 61  KVLKKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVGT 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +      N+ E G + +  D       G    L  +E +I+E+LM N+G+   K QI+
Sbjct: 121 YSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKIMEFLMENKGRVHTKKQIY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             ++G ++   + N +  HIS +R K+ +       + + R +GY ++ 
Sbjct: 181 EKVWG-YEYYGDANTIMVHISHIRDKIEDNPKEPIYLKTIRGIGYKLEK 228


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S+   ++        +     +  ++  L   G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVML--PGLSGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   SQ P+I ++   S+   +   D G +D V KP    E+LAR+ A  R+  
Sbjct: 64  EVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  T             R+     +   L  RE  +L Y++ +  + + + QI S+
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D A +          +G SL G ++ +    L    R D+  ++  L    G  +
Sbjct: 9   ILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGLDI 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P+I ++   S    +   + G +D V KP   RE++AR+   +R   
Sbjct: 69  CKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRNQA 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G + +        + G    L   E R+LE+LM   G   ++ Q+ +A++G 
Sbjct: 129 TPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVWGQ 188

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            D A+ +  V+ ++ +LR+K+  +      + S R  GY+ +
Sbjct: 189 -DRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229


>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
 gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
          Length = 240

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G   +          L  S   D   ++  L       +
Sbjct: 5   ILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIML--PQLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ + IR+     P++ +S        +   + G DD + KP   RE             
Sbjct: 63  EVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRRTE 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    +         + ++ +  +     ++  L  +E  +L YL+ +    + + 
Sbjct: 123 KTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 183 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKF 231


>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
 gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR+ S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRDIRSRSNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +        V      +P +E  +L +L ++  +   + Q
Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI ++R+K++N   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRIREKIKNHDTWGL-ATVWGIGYKFEV 232


>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 232

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++      +  N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWNERAYEIN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|325979111|ref|YP_004288827.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325179039|emb|CBZ49083.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G   +GF++ E       S + D+  ++  L G  G  
Sbjct: 1   MIYCVEDDDDIRELMLYTLKTTGFVAQGFSNAELFWQAIESQKPDLILLDIMLPGSDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +LE  +   + + +P+I  +   +    +   D G DD + KP    E+++R+ A     
Sbjct: 61  ILEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +        + G + +       +  G+   L  +E  +L  LM    +   + ++ + +
Sbjct: 121 QKSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +    E   V+ HI  LR KL +      + + R +GY ++ 
Sbjct: 181 WGEY-FVGETRTVDVHIGTLRTKLGDASH--LIKTIRGVGYRLEE 222


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E      +    D+  ++  L       LE
Sbjct: 5   LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 63  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 122

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E             +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228


>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N  E       S   D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I IS        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKKIRETKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 8   LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLML--PVMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ ++    ++  ++  D+G DD + KP    E+LAR+ A  RR+ 
Sbjct: 66  LEVARRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVT 125

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +  +GR+    G       +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 126 PAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NVV+ +I  LRKKL        + + R +GY +
Sbjct: 185 -PGYQGGSNVVDVYIGYLRKKLEGAGERRLIHTVRGVGYVL 224


>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
 gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +      E    +  + + D++ +   ++       
Sbjct: 6   ILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADK-DIALVLLDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR  +
Sbjct: 65  EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNM 124

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +        + G    L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 VSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNNVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   + + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG--EYIKTIWGMGYKFEV 223


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                S  + D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R+IR  S VP+I ++        +   +SG DD VNKP   +E++AR+ A  R    
Sbjct: 63  DICRLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         +       +  G    L   E  +L  L     +   + ++   ++G 
Sbjct: 123 EPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L      D+  ++  L        
Sbjct: 12  LLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVML--PDMDGF 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++        +     G DD V KP    E++AR+ AI RR  
Sbjct: 70  SVTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTA 129

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +           D  +    G    L   E ++L YLM N  + ++K+QI   
Sbjct: 130 PDEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+              + ++R +GY +
Sbjct: 190 VW-QYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLL 238


>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
 gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++    +        +  R D++ ++  L        
Sbjct: 5   ILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVML--PDISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR     P++ ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 63  TLCGEIRREHHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRRYTH 122

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N         +  +         +  +  +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 123 YNENDRPVGDIIDFNGLVINRSTHECTLYDKPLNLTPLEFDILWMLCENRGQVISAEKLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +++G        N V  HI +LR+K+         + +   +GY ID
Sbjct: 183 ESVWGEKYLDRN-NTVMVHIRRLREKMGEPGRNPRFIKTVWGVGYKID 229


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54
            +L++D    +D        DG  +      +    +  ++R        D+  ++  L 
Sbjct: 7   ILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML- 65

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILA 110
                  E+   IR  S VP+I ++   +    +   + G DD V KP  +R     + A
Sbjct: 66  -PRLDGTEVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +                G +R+  +  +  V GEV  +P RE  +LE  + + G+ + +
Sbjct: 125 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +QI   ++G  D   +   ++ HI +LR ++  +      + + R LGY +D
Sbjct: 185 SQILERLWG-PDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLD 235


>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F   E           D++ ++           
Sbjct: 5   ILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIM--MPKINGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ +IIR     P+I ++        +     G DD + KP +  E+        R    
Sbjct: 63  EICKIIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   K + N  +   + + +D     +  +V  L   E  IL YL  NRG+ V   ++F 
Sbjct: 123 YNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDW 222
           A++         N V  HI +LR+K +        + +   +GY I+ 
Sbjct: 183 AVWKEKYFD-SNNTVMVHIRRLREKMMEPPRNPKFIKTVWGVGYKIEE 229


>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 82/211 (38%), Gaps = 9/211 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +  G       +G  +      E    + +    D+  ++  L        E
Sbjct: 5   LVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLML--PKLDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           + R IR  S VP++ ++        +   + G DD V KP + RE+      + R +   
Sbjct: 63  VCRNIRKTSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQSS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        +++        V+ +   L  +E  +L  + ++ G+  ++ ++   
Sbjct: 123 SGDSGNLQVIRLQDLQIDLFQHKVRVRDKEVDLTSKEFALLSLMASHPGRVFSREKLLEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           ++G +D   +   V+ HI  LR+K+    G 
Sbjct: 183 VWG-YDYYGDARTVDVHIRHLREKIEPDPGH 212


>gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51]
 gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++     +  ++G      ++      + +    D+  ++  L   G    
Sbjct: 3   IMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVML--PGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR+ S VP+I +S    +      F  G DD + KP    E+  R+ A+ RR   
Sbjct: 61  AVCEKIRSFSDVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPHR 120

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +        +         +  +    GE   L  +E  +L +L  NRG+   + Q+ 
Sbjct: 121 LEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   + N V   I ++R+K+  +      + +   +GY  
Sbjct: 181 DRIWGL-DFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKF 226


>gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 4343-70]
          Length = 229

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 10  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVML--PDLDGF 67

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R    + P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +               +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 128 NGDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ +      + + R +GY +
Sbjct: 188 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 228


>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
 gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
          Length = 232

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 84/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++    + +       S + +++ ++  L        
Sbjct: 5   ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            L + IR +   P+I ++        +     G DD + KP            ++     
Sbjct: 63  TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +  D  +  +  +   L  +E  IL  L +NRG+ V+  ++
Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F  ++G        N V  HI  LR+K+  +      + +   +GY I+ 
Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 232


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N  E    L  S   D+  ++  L  K    +
Sbjct: 6   ILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARVA 113
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++            
Sbjct: 64  EVCREVRAQKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + + +      I ++ +    +  GE   L RRE  +  YL  +RG+ + +  +
Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
              ++G +D   +   V+  + +LR+K+  +    + + ++R +GY
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGY 228


>gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++          G  +    + E    L    R D+  ++  L   G    
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR + 
Sbjct: 62  EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + T     +          GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 EASDSATFGTLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+         + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEEVPSSPTLIRTVRGVGYRLD 222


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       S + D+  ++  L    +  ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVML--PKKDGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           + + +R +   VP++ ++        +   + G DD + KP   RE+      + R +  
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + ++  ++    G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEVDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|300790141|ref|YP_003770432.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799655|gb|ADJ50030.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  ++  +          + R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLEFNGYQVQLASDGAQALEAIIADRPDAMVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAI 120

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +         + +    R+    G    L R E  +LE  ++     + + +I 
Sbjct: 121 PEGQNGQASEALAFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E ++  LR+K   +     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 225


>gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +  F  +G ++E   + +    +  +    +  ++           
Sbjct: 5   ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVM--MPKMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S +P+I ++        +  F +G DD + KP    E+  RV AI +R K 
Sbjct: 63  TMLCKLRESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +NN  +        +    E   +       L  +E  IL  L  N+G+  +   ++  +
Sbjct: 123 NNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           +        +N V  HI  LR+KL + +     + +   +GY I+ +
Sbjct: 183 W-KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 228


>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
 gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
          Length = 226

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++       G +G  +           +    + D++ I   ++       
Sbjct: 6   ILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEK-DIALIILDVMMPRMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           +  R IR  SQVP+I ++        L  F+ GVD+ +                      
Sbjct: 65  QTCREIRQSSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRSHA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  + G I +       ++      L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 IGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K     + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKGN--YIKTIWGMGYKFEV 224


>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 244

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A  G +G  +   +          + + D+  ++  L   G   LE
Sbjct: 21  LVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIML--PGFDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVAA 114
           + R I+A   VP++ ++        L     G DD + KP   RE        +     A
Sbjct: 79  VCRRIQAQRPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRRVERA 138

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      G + +    R   +      L   E  +L  L A     + + Q+ 
Sbjct: 139 QQAARTPALGSLRFGELEIDHVQRRVRLGSGDVHLTPTEFDLLACLAAQPRAVLTREQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SH+  LR+K+    G   + +   +GY+++
Sbjct: 199 AEVWDWTDASG-TRTVDSHVKALRRKI----GASWIRTVHGVGYALE 240


>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E        +R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLML--PGMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + +
Sbjct: 64  VARSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197]
 gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
 gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae]
 gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae
           Sd197]
 gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
          Length = 229

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    +       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
 gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  D G       S             D+  ++  L   G    
Sbjct: 6   ILVVEDDQDINRLLCKILEDGGYCCRPAFSGSEAMLWAGQYDYDLILLDLML--PGLTGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E    +R    +P+I +S    L++ ++    G DD + KP  + E+        R    
Sbjct: 64  EFIAELRKSRTMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQ 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       +    G + +  +       G+   +  RE  IL  LM+   K   + Q++ 
Sbjct: 124 FSSPAGEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  +   ++N V  HIS LR KL      + + +   +G+ ++ 
Sbjct: 184 QVWG-GEYFGDDNTVNVHISNLRSKLAKVSSAEYIKTVWGIGFKMNE 229


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  ++ +           D+  ++  L   G    
Sbjct: 489 ILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIML--PGMNGF 546

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ + IRA + +P++ +S        +     G DD + KP    E+             
Sbjct: 547 EICKQIRAVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K +NN      I + +  R   V GE      +E  +L + + +  + ++K Q++ 
Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +G ++ A + + V  HI KLR+K+  +      +++    GY ++ 
Sbjct: 667 RNWG-YESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 713


>gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 225

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  N       L      DV  ++  L   G    
Sbjct: 3   ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  GVVKTLRTTRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R  +  G    L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDNFSVKLIHTVRGVGYVLE 220


>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 254

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ H+++LR+K + +     + + R LGY ++ 
Sbjct: 211 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 252


>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         D+G  +      +           D+  ++      G    
Sbjct: 5   ILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN-PDLIVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L  +IR     P+I +S   + Q  +     G DD + KP   +E+ AR+ A  RR + 
Sbjct: 62  ALCELIRKSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQR 121

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +          +  +G       E  P   RE  I+ +L  + G+   + Q++  +
Sbjct: 122 INSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G +D   + + +  H+ K+R KL        + +   +GY 
Sbjct: 182 WG-YDAEGDSSTITEHVKKIRAKLLKYDETPYISTVWGIGYK 222


>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 243

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD   +++    L   +G  +    + E      +    D+  ++      G    
Sbjct: 19  ILFADDDPEIREVVRILLESEGYQVVEAENGEQA-ASMADDTFDLIILDVM--MPGRNGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR     P++ ++           F +G DD ++KP  + E+ ARV A+ RR  +
Sbjct: 76  SACAEIRRRLNTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRRYHI 135

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E G          +     +    G    L   E RIL  L +NRGK      I+
Sbjct: 136 YKGKEEDGEESIAVKDLVIQKSFNEVMKNGGEILLTDLEYRILLLLASNRGKLFTIENIY 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +++G        N V  HI  LRKKL  +      + +    GY I+
Sbjct: 196 ESVWGEAYYYSANNTVMVHIRNLRKKLEADPKNPKYIVNVWGKGYRIE 243


>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
 gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
          Length = 230

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
 gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G ++           +    + D++ I   ++       
Sbjct: 15  ILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEK-DIALIILDVMMPHMDGW 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 74  QTCREIRKESKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRRTNA 133

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        I +       ++ G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 134 LASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILNNVW- 192

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K   D + +   +GY  + 
Sbjct: 193 NYDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEV 233


>gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
 gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  + +   +G         +           D+  ++  L   G   +
Sbjct: 5   ILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + I+       +P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  QIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVIRR 122

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  ++          R+          G    +   E R+L + M +  +  ++ Q+   
Sbjct: 123 VSPTSLEEAIEVHGLRLDPISHRVTSAGSELDMGPTEFRLLHFFMTHPERVYSREQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIAPMGHDKLVQTVRGSGYRF 225


>gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 245

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|322374704|ref|ZP_08049218.1| DNA-binding response regulator VncR [Streptococcus sp. C300]
 gi|321280204|gb|EFX57243.1| DNA-binding response regulator VncR [Streptococcus sp. C300]
          Length = 218

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 8   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 66  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233


>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
 gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
          Length = 221

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    +D        DG  +    + E    L      D+  ++  L       +E
Sbjct: 1   MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWML--PNVSGIE 58

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +++ S     P+I +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 59  VCRQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRT 118

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 119 RPAAMGARLEFDDIVLDAETHRVTRADQSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 179 WGR-DIYVDTRTVDVHIGRLRKALCQYGGDDPLRTVRGAGYAL 220


>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 232

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    D   ++  +  E    L  S + D+  ++  L       +
Sbjct: 5   ILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLML--PKINGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           +L R  R  S+VP++ IS   S          G DD ++KP    E           A +
Sbjct: 63  DLLRHFRESSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A                + +       +V+G   PL  +E  IL+ LM N  +   K Q
Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+  I+   D    ENV+  HI +LR+K+         + +   +GY +
Sbjct: 183 IYQFIW-EDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGYKM 230


>gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
 gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGLEAVATVRHTPPAIILLDLML--PGSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR   +
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQA 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +A       +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGDKPFIRAVYGMGYRWE 232


>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
 gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
          Length = 243

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   ++ E    +       +  ++           
Sbjct: 8   ILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+         
Sbjct: 66  GVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++ ++ R      E   L   E  +LE L++  G+  ++  I
Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY  
Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234


>gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +          A  D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLML--PEMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSPE 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + T     GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 TVESGTATLAAGPVRMDIERHVVTVDGSTVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEPEPSSPRHIVTVRGLGYKFE 226


>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
 gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 84/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++    + +       S + +++ ++  L        
Sbjct: 15  ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVML--PDIDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            L + IR +   P+I ++        +     G DD + KP            ++     
Sbjct: 73  TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 132

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +  D  +  +  +   L  +E  IL  L +NRG+ V+  ++
Sbjct: 133 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F  ++G        N V  HI  LR+K+  +      + +   +GY I+ 
Sbjct: 193 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 242


>gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G+ ++          L       +  ++  L   G    
Sbjct: 3   LLLIEDNDKTRAWLEKGLREAGLVVDTVADGRDGLHLALEQDYALIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++   ++   +   + G DD + KP    E+LARV A  RR   
Sbjct: 61  QVLRALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHAP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   + + +        GE   L R+E  +L  L +  G+ + +T I S ++G+ 
Sbjct: 121 AAATLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E NVV+  I +LRKK+ +      +++ R +GY ++
Sbjct: 180 NFDSETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219


>gi|15900511|ref|NP_345115.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           TIGR4]
 gi|15902572|ref|NP_358122.1| VncR, response regulator [Streptococcus pneumoniae R6]
 gi|111657296|ref|ZP_01408060.1| hypothetical protein SpneT_02001494 [Streptococcus pneumoniae
           TIGR4]
 gi|116516514|ref|YP_816026.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39]
 gi|148983983|ref|ZP_01817302.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988968|ref|ZP_01820368.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992289|ref|ZP_01822012.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP9-BS68]
 gi|149002281|ref|ZP_01827223.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS69]
 gi|149005712|ref|ZP_01829451.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP18-BS74]
 gi|168482836|ref|ZP_02707788.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|168488288|ref|ZP_02712487.1| VncR, response regulator [Streptococcus pneumoniae SP195]
 gi|168490511|ref|ZP_02714654.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168492763|ref|ZP_02716906.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|169833674|ref|YP_001694082.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|182683534|ref|YP_001835281.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           CGSP14]
 gi|221231426|ref|YP_002510578.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225854136|ref|YP_002735648.1| VncR, response regulator [Streptococcus pneumoniae JJA]
 gi|225856303|ref|YP_002737814.1| VncR, response regulator [Streptococcus pneumoniae P1031]
 gi|225858438|ref|YP_002739948.1| VncR, response regulator [Streptococcus pneumoniae 70585]
 gi|237650128|ref|ZP_04524380.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821659|ref|ZP_04597504.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974M2]
 gi|303253928|ref|ZP_07340049.1| two-component system, response regulator [Streptococcus pneumoniae
           BS455]
 gi|303260094|ref|ZP_07346067.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP-BS293]
 gi|303261278|ref|ZP_07347226.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263943|ref|ZP_07349864.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS397]
 gi|303265934|ref|ZP_07351830.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS457]
 gi|303268316|ref|ZP_07354113.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS458]
 gi|4583523|gb|AAD25108.1|AF140356_1 VncR [Streptococcus pneumoniae]
 gi|5830544|emb|CAB54582.1| response regulator [Streptococcus pneumoniae]
 gi|14972078|gb|AAK74755.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           TIGR4]
 gi|15458102|gb|AAK99332.1| VncR, response regulator [Streptococcus pneumoniae R6]
 gi|116077090|gb|ABJ54810.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39]
 gi|147759596|gb|EDK66587.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762652|gb|EDK69612.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP18-BS74]
 gi|147924130|gb|EDK75242.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925465|gb|EDK76542.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928915|gb|EDK79927.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996176|gb|ACA36788.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|172043603|gb|EDT51649.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|182628868|gb|ACB89816.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           CGSP14]
 gi|183572926|gb|EDT93454.1| VncR, response regulator [Streptococcus pneumoniae SP195]
 gi|183574934|gb|EDT95462.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183577048|gb|EDT97576.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|220673886|emb|CAR68392.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225720424|gb|ACO16278.1| VncR, response regulator [Streptococcus pneumoniae 70585]
 gi|225723575|gb|ACO19428.1| VncR, response regulator [Streptococcus pneumoniae JJA]
 gi|225725840|gb|ACO21692.1| VncR, response regulator [Streptococcus pneumoniae P1031]
 gi|301799650|emb|CBW32209.1| two-component system, response regulator [Streptococcus pneumoniae
           OXC141]
 gi|301801472|emb|CBW34164.1| two-component system, response regulator [Streptococcus pneumoniae
           INV200]
 gi|302599104|gb|EFL66129.1| two-component system, response regulator [Streptococcus pneumoniae
           BS455]
 gi|302637412|gb|EFL67899.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638789|gb|EFL69251.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP-BS293]
 gi|302642154|gb|EFL72504.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS458]
 gi|302644518|gb|EFL74769.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS457]
 gi|302646348|gb|EFL76574.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS397]
 gi|332074410|gb|EGI84886.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332076436|gb|EGI86899.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332077033|gb|EGI87495.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332202480|gb|EGJ16549.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332203763|gb|EGJ17830.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 218

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|306825660|ref|ZP_07458999.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432021|gb|EFM34998.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 218

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         E    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLADCGYETIQAADGEEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++ + 
Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEIAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 16  LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLML--PVMDG 73

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S +P++ ++   ++   ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 74  LEVARRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVT 133

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +  +GR+    G    L  +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 134 PAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW- 192

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NVV+ +I  LRKKL  +     + + R +GY +
Sbjct: 193 -PGYQGGSNVVDVYIGYLRKKLEAEGERRLIHTVRGVGYVL 232


>gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G  ++  +  E      ++ +  V  ++           
Sbjct: 5   ILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVM--MPKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +    +  +I ++    +   +   + G DD + KP   RE+LAR  A+ RRL+ 
Sbjct: 63  DVCRRLPTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLRRLEA 122

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    I      + +D R     G    L  +E  +L  L+    +  ++ ++   
Sbjct: 123 GKAVEPAAGIEIGGLLIRTDSRTVTADGSAIELTPKEFDLLALLLGKPDRVFSRDELLEL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+ D       V+ H+ +LRKKL  +     + +   +GY 
Sbjct: 183 VWGI-DYEGGTRTVDIHVQRLRKKLGAQHAA-LLQTVFGVGYK 223


>gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
 gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
          Length = 234

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      S    D+  ++  L  G G + 
Sbjct: 10  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQF 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 70  IKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 129

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +         + +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 130 PMAVEEVIEMQGLSLDPSSHRVMAKEKALDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 190 GT-NVYVEDRTVDVHIRRLRKALEPEGHDKMVQTVRGTGYRF 230


>gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +           L  S   DV  ++           
Sbjct: 11  ILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVM--MPELDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA S+VP+I ++    +   +   + G DD + KP   +E+ AR+  + RR   
Sbjct: 69  AVLERIRAQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQ 128

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               +  G                + R     GE   L   E  +LE L++  G+ + + 
Sbjct: 129 GQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRL 188

Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A++G   + A +  VV+ HIS+LR KL  + L  + + + R +GY  
Sbjct: 189 DMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMF 239


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N              D+  ++  L   G    E
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLML--PGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  ICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDL 122

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                        P+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   
Sbjct: 123 AEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKLE 227


>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   +     A     G              L  + R D+  ++  L    G  +
Sbjct: 5   ILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVDGADL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R     + +P+I ++        +   + G DD + KP + RE++ARV A+ RR  
Sbjct: 65  TRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRTG 124

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +            R+  D  +  V      L   E  +L  L+++ G    + ++   
Sbjct: 125 GGSPVPPVILEAGRLRLDLDRHEARVADRTINLTPTEFELLRILLSHPGHAFTRRELIEQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G +D    E  ++SHI  LR+KL        +++   +GY +
Sbjct: 185 GPG-YDYEGMERTIDSHIKNLRRKLDAAGAGVRIETVYGVGYRL 227


>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   ++      L   +  D+  ++           
Sbjct: 15  ILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVM--MPELDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA S+VP+I ++    +   +     G DD + KP   +E+ AR+  + RR   
Sbjct: 73  AVVERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRANT 132

Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S     +G                 + R      E   L   E  +LE L++  G+ +++
Sbjct: 133 SQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPISR 192

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   ++G   + + +  VV+ HIS+LR KL  +    + + + R +GY  
Sbjct: 193 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMF 244


>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 237

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIML--PKRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V
Sbjct: 63  EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               AE               +  D      + E   L  RE  +L YL  + G+ + + 
Sbjct: 123 VTPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
 gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E           D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 230

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       S +           D   ++      G   L
Sbjct: 5   ILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIM--MPGMNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRNSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                     +  +      L  +E +IL  LM N    + + +
Sbjct: 123 LLKEWNELSPNRERTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNNVLTRER 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469]
 gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia fergusonii ATCC 35469]
 gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia fergusonii B253]
 gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGETPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPSGHDRMVQTVRGTGYRF 225


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLML--PKLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR+ V
Sbjct: 62  DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQI 173
           +   +     +    G                      RE  +L YL  + G+ + +  +
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       V ++R +GY +
Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++ + D+S I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DISIILLDIMLPDISGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV    +     
Sbjct: 64  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 124 SEEEGKTEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++             +    + E    +    + D++ I   ++       
Sbjct: 14  ILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEK-DIALIILDVMMPKMDGW 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           E+ R IR +S+VP+I ++     +  L  FD GVD+ +                      
Sbjct: 73  EVCREIRKNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G I +        V G+   L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 133 NNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW- 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR K+ +K   + + +   +GY  + +
Sbjct: 192 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEVD 233


>gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
 gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +    +      +       +  ++      G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIM--MPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +                +
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       + +NN      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPNSGSREQANNEITIKGMVINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR KL+        + +   +GY I+ 
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKLKEDTRQSKIITTVWGVGYKIEK 234


>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
 gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G  ++     +           D+  ++  L        E
Sbjct: 4   LVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPI--LTGYE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD + KP +  E+ AR+ AI RR K  
Sbjct: 62  VCQQIREFSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNKRK 121

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  P  +         + +   ++     L  +E  IL+ L  N GK   + Q+ +
Sbjct: 122 APAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQLLT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+G      +   V+ ++ +LR+K+       + + +K  +GY  
Sbjct: 182 LIWGSK-YPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYF 226


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++  ++      L +    D+  ++  L   G    
Sbjct: 3   ILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIML--PGINGK 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR      P I ++   S+   ++  D G DD + KP    E+LAR+ A  RR  
Sbjct: 61  EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +                R      +   L   E  ILEY M N G+ + +T I   I+ 
Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++     NV++ HIS+LR KL        + + R +GY ++ 
Sbjct: 181 -YNYESFSNVIDVHISRLRNKLEKDFDKGIIHTVRRVGYVLEE 222


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E  +              ++  ++  L       
Sbjct: 5   LILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLML--PVMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    ++  +   D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  IEVARRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRVT 122

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +  +GR+    G    L  +E  +LE L  N GK   + +I   ++ 
Sbjct: 123 PAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NVV+ +I  LRKKL        + + R +GY +
Sbjct: 182 -PGYQGGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221


>gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933]
 gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227]
 gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           W3110]
 gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89]
 gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1]
 gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A]
 gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS]
 gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739]
 gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5]
 gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94]
 gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11]
 gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1]
 gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88]
 gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a]
 gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989]
 gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39]
 gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026]
 gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606]
 gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B]
 gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736]
 gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Escherichia coli O157:H7 str. EDL933]
 gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli]
 gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150]
 gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227]
 gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K12 substr.
           W3110]
 gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli
           UTI89]
 gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC
           O1]
 gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli HS]
 gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E24377A]
 gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli SMS-3-5]
 gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii CDC 3083-94]
 gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11]
 gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli]
 gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli 55989]
 gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI1]
 gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli S88]
 gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI39]
 gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli ED1a]
 gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli UMN026]
 gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia
           coli LF82]
 gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli B str. REL606]
 gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BL21(DE3)]
 gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli DH1]
 gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15]
 gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator
           [Escherichia coli 042]
 gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli IHE3034]
 gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU
           83972]
 gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146]
 gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator
           [Escherichia coli ETEC H10407]
 gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli W]
 gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1]
 gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 85-1]
 gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 153-1]
 gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 3431]
 gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112]
 gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83]
 gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327]
 gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B]
 gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           G5101]
 gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str.
           493-89]
 gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H
           2687]
 gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli EPECa14]
 gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E128010]
 gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           sonnei 53G]
 gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli LT-68]
 gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1180]
 gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli RN587/1]
 gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli KO11]
 gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1520]
 gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E482]
 gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H120]
 gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H252]
 gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H489]
 gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M863]
 gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA007]
 gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TW10509]
 gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 57-2]
 gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 60-1]
 gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 117-3]
 gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1167]
 gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044]
 gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125]
 gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli STEC_7v]
 gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Escherichia coli AA86]
 gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 155-74]
 gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 5216-82]
 gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 3594-74]
 gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F + +         + D++ ++  +        
Sbjct: 3   ILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMI--PDIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR  +
Sbjct: 61  TILRKIRETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFTL 120

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  ++     +         + R   +      L   E  IL YL ANRG  ++  Q+F
Sbjct: 121 YNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             I+G        N V  HI  LR+K+++       + +   +GY+I+ 
Sbjct: 181 QEIWGEK-YFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTIEK 228


>gi|302530375|ref|ZP_07282717.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439270|gb|EFL11086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E  +          + R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLEFNGYTVELASDGAQALETILANRPDAMVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + E         + +    R+    G    L R E  +LE  ++     + + +I 
Sbjct: 121 PDAQQGETSEVLSFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E ++  LR+K   +     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 225


>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  F + +       S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  HICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMR 122

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN  E   I V                  + G+   L   E  IL YL  ++GK V   
Sbjct: 123 YNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K+         + +   +GY+I+ 
Sbjct: 183 ELFEAVWGEKYLD-NNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233


>gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 232

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 81/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+     +   DG+ +    +      + S    D+  ++     +     +
Sbjct: 7   LVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMISEGPFDLVLLDIM--MEDIDGYD 64

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  +        P+I +S        +  F  G D  + KP     + A+V    +R + 
Sbjct: 65  VLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIKRYRQ 124

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +       GP          +   +   L  +E +++++ M +  +  +K Q++ 
Sbjct: 125 LQESKQQASRIALGPFLFNHHTFTFQKNNQEIALSSKEIQLMKFFMEHPNQVFSKEQLYQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            I+   D  V+ N +  +I  LR K+         + +   +GY  
Sbjct: 185 NIW--KDTVVDNNTIMVYIRHLRTKIEENPTNPKYIKTVWGIGYRF 228


>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
 gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D    ++        +G  +      E    L      DV  ++  L    G +V 
Sbjct: 9   LVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   A   +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRVRP 128

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G I + S+            L   E ++L   M   G+  ++  +   ++G
Sbjct: 129 TTMGQVLVYGDITLDSETHRVTRGEHPIKLGPTEFKLLASFMEKPGRVWSRDLLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 189 R-EIYVDTRTVDVHVGRLRKALNQFGGDDPLRTIRGAGYAL 228


>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 230

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       S + D+  ++  L    +  ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVML--PKKDGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           + + +R +   VP++ ++        +   + G DD + KP   RE+      + R +  
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + ++  ++    G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G +++   +         +   D+  ++      G   LE
Sbjct: 9   LVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVM--MPGINGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  SQVP++ ++     +  +     G DD V KP   +E+  RVA++ RR ++ 
Sbjct: 67  VCKRLRQVSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRARMP 126

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G +R+    R   + G   PL  RE  +L + +A+ G   ++  +   +
Sbjct: 127 RPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +       +++ V  H+ +LR+K+  +      V +   +GY  D
Sbjct: 187 WSWD--FGDQSTVTVHVRRLREKIERDPAKPTRVATVWGVGYRYD 229


>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         DG ++           +    + D++ +   ++       
Sbjct: 6   ILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNK-DIALLILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R +R  SQVP+I ++     +  L  FD GVD+ +                     +
Sbjct: 65  QVCREVRQVSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTNV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G I +        +  +   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 LFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K   D + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEV 224


>gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120]
 gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA +  +P+I ++   +L      F+ G DD V KP   +E++ R+ A + R  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  +      E       + + D+  ++           
Sbjct: 4   ILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVM--MPKLDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R   + VP++ ++    ++  +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 62  ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQ 121

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    +      +      +E  +L  L    G+ +++ +    +
Sbjct: 122 REKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G +        V++HI+ LR K+ +       + +   +GY ++
Sbjct: 182 WG-YAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225


>gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
          Length = 221

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         
Sbjct: 62  SICKIMRGQSDVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220


>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 232

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 7   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 65  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 125 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 185 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 232


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 54  VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 111

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 112 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 171

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 172 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 231

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 232 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 274


>gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LARV     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDDFPIKLIHTVRGVGYVLE 220


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E  +              ++  ++  L       
Sbjct: 8   LILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLML--PVMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP++ ++    ++  +   D+G DD + KP    E+LARV A  RR+ 
Sbjct: 66  IEVAKRIRKTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRVT 125

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +  +GR+         L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 126 PAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NVV+ +I  LRKKL        + + R +GY +
Sbjct: 185 -PGYQGGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 224


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 14  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVML--PDLDGF 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R    + P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 72  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                             +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 132 TGEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ +      + + R +GY +
Sbjct: 192 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 232


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++ + D+  I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DIGIILLDIMLPDISGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI      +
Sbjct: 64  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 124 SEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 221


>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGYKIEKD 232


>gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 8   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 66  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233


>gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +  F  +G ++E   + +    +  +    +  ++           
Sbjct: 8   ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVM--MPKMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S +P+I ++        +  F +G DD + KP    E+  RV AI +R K 
Sbjct: 66  TMLCKLRESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKS 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +NN  +        +    E   +       L  +E  IL  L  N+G+  +   ++  +
Sbjct: 126 NNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELL 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           +        +N V  HI  LR+KL + +     + +   +GY I+ +
Sbjct: 186 W-KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 231


>gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 246

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             +   ++  ++  L   G   LE
Sbjct: 22  LVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A              +    R   V  E   L   E  +L  L       +++ Q+ 
Sbjct: 140 TIAATAPRGATLRLGDLEIDHAQRRVRVHNEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|293365004|ref|ZP_06611721.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|306829124|ref|ZP_07462314.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|307703252|ref|ZP_07640198.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316454|gb|EFE56890.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|304428210|gb|EFM31300.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|307623327|gb|EFO02318.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 218

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         E    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIQAADGEEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++ + 
Sbjct: 121 TGRIFSYKNTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
 gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
          Length = 244

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 90/239 (37%), Gaps = 24/239 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +          E            +  ++  L   G    
Sbjct: 7   ILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  EVCRRIRTSSNVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQH 124

Query: 122 SN--------------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
                                        + +         +G+   +P +E  +L +L 
Sbjct: 125 VFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFLA 184

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +   + Q+   I+G ++ A +   V+ HI +LR+KL     ++ + +   +GY  
Sbjct: 185 SSPNQVFTREQLLDHIWG-YEFAGDSRTVDVHIKRLREKLPQVEEWE-ISTVWGIGYKF 241


>gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
 gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium]
 gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETSGHDRMVQTVRGTGYRF 225


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD+  + +        +G  +      E           D+  ++  L    G + 
Sbjct: 6   IMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDGFEF 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R    H   P+I +S        +   + G DD + KP   RE+LAR+ A++RR++
Sbjct: 66  VRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQ 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      +     + +  D  +  V+G+   L   E  +L +L  N GK  ++  +
Sbjct: 126 LGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G +D   +   V+ HI +LR K+ +       V + R  GY  
Sbjct: 186 LDKLWG-YDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKF 232


>gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 234

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +   ++ +    +       +  ++      G   L
Sbjct: 6   ILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIM--MPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ + IR  + +P+I +S   +    +    +G DD V KP +                +
Sbjct: 64  EMCKKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +         + N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSNVSSSAKNEISIKGLIINKDNHKVIVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  I   + A R +     +I
Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 235

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D A + +         G ++   ++ +           D+  ++  L    G  V
Sbjct: 5   ILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDIDGIDV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            +  +       +P+I ++        +   + G DD + KP   RE    +  V    +
Sbjct: 65  CKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRRSK 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N   + G I + ++        E+  L  +E  +L+ L  NRGK + +  +   +
Sbjct: 125 NESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLLDKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 185 WG-YEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKL 227


>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
 gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
          Length = 229

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|308173799|ref|YP_003920504.1| yvrH [Bacillus amyloliquefaciens DSM 7]
 gi|307606663|emb|CBI43034.1| yvrH [Bacillus amyloliquefaciens DSM 7]
          Length = 235

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  ++    +  
Sbjct: 9   LIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILD--IMLPDGEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP+I +S        +     G DD + KP   +++  RV A  RR   
Sbjct: 67  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKKVAYRVKAQLRRSSY 126

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                        P  +     +    G    L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 127 LQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+       D + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKF 230


>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 229

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLML--PGMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR    
Sbjct: 64  VARAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDV 123

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLML--PRVPGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV      ++ 
Sbjct: 66  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++      E G + +   G    V G+   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFE 229


>gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +   G  G   +GF   +  +        ++  ++  L   GE  
Sbjct: 1   MIYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIML--PGEDG 58

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
             L   +    + S++P+I ++   +    +   + G DD + KP    E     +    
Sbjct: 59  YTLLEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   S        + V  +            L  +E  +L YL+ N+G  +++ +I  
Sbjct: 119 RSKKHSSKKEYHYKTLTVNVERHQVFDNDRAVELTLKEFELLRYLVENKGIVLSRDEILE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G ++ A E   V+ HI  LR+KL +      +++ R +GY I
Sbjct: 179 KIWG-YECAGETRTVDVHIRTLRQKLGDSGF--LIETVRGVGYRI 220


>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G ++   N       + S     +  I+       +   
Sbjct: 4   ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVM--MPNKNGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR    +P++ ++     +  +  F  G DD + KP    E++ RV A+ RR K+
Sbjct: 62  ELCKEIRELYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKI 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T     + ++  +  +  E    P +E ++L  L ++ G+  ++ Q+   I+G 
Sbjct: 122 NTTNKVTIGNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+SHI K+RKKL  ++ FD + + R LGY ++ 
Sbjct: 181 SDFEGFDRTVDSHIKKIRKKLNQQMAFD-ILTIRGLGYRLEV 221


>gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     +              +  ++  L   G   L
Sbjct: 10  IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVPAVHEHSPALILLDLML--PGSDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  + VP++ ++        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 68  TVCRELRRFTDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                +      +         QG++  L   E R+L+ L +  G   ++ Q+ + +Y  
Sbjct: 128 PLENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL         + S   +GY  +
Sbjct: 188 Y-RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWE 228


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +          +G  +      E    L S    D+  ++  L    G +V 
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVSGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR++ 
Sbjct: 66  RRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRIRP 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  A++G
Sbjct: 126 GLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK L      DP+ + R  GYS+D
Sbjct: 186 -SDVYVEARTVDVHIGRLRKALNGSSDGDPIRTVRSAGYSLD 226


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++D   A     G  +    S E    L  S R D+  ++  L        +
Sbjct: 13  LVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLL--PDISGFD 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           + R +R     VP+I ++   +   T+     G DD V KP     ++        RV  
Sbjct: 71  VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + S+       + +          G    L   E R+L Y+M N G+ + + Q+ 
Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D A +  +VE+++S LR+KL +  G + + ++R +GY++
Sbjct: 191 ENVWG-WDYAGQSQIVETYVSYLRRKL-DPFGPNLIHTQRGVGYAL 234


>gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes str. Scott A]
          Length = 225

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 26/242 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +E     +           D+  ++  L   G   L
Sbjct: 4   ILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLML--PGLDGL 61

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----------- 108
           E+ R IR +S   +P+I ++        +   + G DD V KP   RE+           
Sbjct: 62  EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121

Query: 109 ---------LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
                          I+ +   S +  + GP+ +  +     ++ +   L  +E  +L  
Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           ++ N G+ + + ++   I+G +D   +   V+ HI  LR+K+    G  D V++ R +GY
Sbjct: 182 MVTNSGQVLTREKLLEKIWG-YDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240

Query: 219 SI 220
            +
Sbjct: 241 RL 242


>gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905]
          Length = 229

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISSMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 245

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++  
Sbjct: 81  VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V  E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
 gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
          Length = 227

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLML--PEISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++ARV A  RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRRSEY 122

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +         + +    R  ++ G+   L   E  IL  L A+ G+  ++ QI   + 
Sbjct: 123 TPSLDSVLIIDQLEIDKARRLVKIGGKAVDLTATEFDILINLAASPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+         + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTIHGVGYKM 223


>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 227

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A       S+E  +  +      +    D+  ++  L        
Sbjct: 5   ILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLML--PEISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAIY 116
           E+ + IR   Q P++ ++   + +  ++ F  G DD + KP        R       +  
Sbjct: 63  EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  K      + G +++  +     V G    L R E  IL  L+ N G+   + Q+   
Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + GL +    +  +++HI  +RKKL N      + +   +GY  +
Sbjct: 183 VMGL-EYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFE 225


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +              +   D   ++  L    G +V
Sbjct: 3   ILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R     S +P++ ++        +   + G DD + KP   R +LAR+ A+ +R  
Sbjct: 63  CRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKRTH 122

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               R++   +     +        V+G    L   E  IL +L  N G   ++ QI  A
Sbjct: 123 PPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQIIDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G  D  V E  V+  I  +RKKL +    D + + R +GY +
Sbjct: 183 VKGE-DYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYRL 223


>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 248

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G  +           +      D+  ++           
Sbjct: 15  ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVM--MPKLDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S+VP+I ++    ++  +   + G DD + KP   +E+ +RV  I RRL  
Sbjct: 73  GVCQAVRKTSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSP 132

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +++ +D R      E   L  +E  +L  L +  G+ V++ ++ 
Sbjct: 133 LKAFNHQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELL 192

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++    D  V+   V+ H+S+LR+KL+ KLG    + + R +G+++
Sbjct: 193 QKVWEYNKDSIVDTRTVDVHMSRLRQKLKEKLGETILIHTVRGVGFTL 240


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   +  D++ ++  L   G   L
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWML--PGLSGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R +RA    +P+I ++    +   +   D+G DD V KP    E+LAR+ A   R  
Sbjct: 63  EICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +  +   + +    R+         L  +E  +LEYL+++  +   + QI   ++G
Sbjct: 123 ETDEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        + + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEEHNEKRLIHTVRGVGYAL 222


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D     F  +G  +    +      +    + DV  ++  L   G   LE
Sbjct: 19  LIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLML--PGYDGLE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R +R    +P+I ++    +   +   D+G DD + KP   RE++AR  A+  RR   
Sbjct: 77  VTRRLRRSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      I +           +      RE  +LE+ + N  + +++  I S ++G +
Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWG-Y 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   ++N+VE +I  LR+KL +      + + R +GY++
Sbjct: 196 DYMGDDNIVEVYIRHLREKLHDTP-PRLLQTVRGVGYTL 233


>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 235

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A        +   +S +    L  + + D+  ++  L        
Sbjct: 6   ILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLML--PDLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           ++ + IR  S +P++ ++        +     G DD + KP   RE++        R  +
Sbjct: 64  DVCKTIRKKSDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +          + +  +  +  V+GE+  L   E ++LE L  +  +  ++ ++ 
Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + I G  D    E  ++ HI  +R+K+ +       + +   +GY  
Sbjct: 184 NLIQG-DDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKF 229


>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
 gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
          Length = 229

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 229

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G  ++   +    +    S+  D+  ++  L   GE   +
Sbjct: 5   LIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIML--PGEDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IRA   +P++ +S        +     G DD + KP    E++ARV +   R +  
Sbjct: 63  VCREIRAEKDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISRYEQL 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +        +Q +   LP +E  +L +L  N G   +K  +F 
Sbjct: 123 TNRESSRPQVLRCGNLVIDLSSHQVFLQDKEILLPNKEFELLAFLAKNPGIVFSKDTLFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G  D   + + V  HI+++R+K+         +++    GY  
Sbjct: 183 RVWGE-DSLGDTSTVSVHINRIREKIEEDSSKPYYIETVWGAGYRF 227


>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 230

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY +D 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLDV 229


>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 229

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G                   + D+  ++           
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++       +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D    E  ++ HI++LR+K + +     + + R LGY 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYR 229


>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 PNSNDI---LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL +    D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215


>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +           +  S   ++  ++          L
Sbjct: 3   ILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVM--MPNMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R+     P++ ++    +   +   D+G DD + KP             +    
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A    + +    +     +++ +D R+         L R E  +L  LM N  K +++  
Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LRKK         + + R +GY +
Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEESGEPRLIHTVRGVGYVM 227


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++            ++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVML--PDIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +IIR  S VP+I ++   + +  +  F+ GVDD + KP H+   + RV         
Sbjct: 62  SICKIIRGQSDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRRAAS 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  +   + + S      V G+   L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 TEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL        + + + +GY ID
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----CIPYIKTVKGIGYKID 220


>gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
 gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
          Length = 229

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           ++  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSLDDVIDVQGLKLDPVSHRVTSNDKPLEMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEEHGHDKLVQTVRGAGYRF 225


>gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 236

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E         + ++  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR K 
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
            +   +              ++ E F +           +E  +L YL+  +G+ + +  
Sbjct: 124 VSEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
 gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
          Length = 243

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   ++ E    +       +  ++           
Sbjct: 8   ILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+         
Sbjct: 66  GVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++ ++ R      E   L   E  +LE L++  G+  ++  I
Sbjct: 126 ITTSLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY  
Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 5   LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLML--PVMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP++ ++    ++  ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  IEVAKRIRKTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVS 122

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +  +GR+    G    L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 123 PAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NVV+ +I  LRKKL        + + R +GY +
Sbjct: 182 -PGYQGGSNVVDVYIGYLRKKLEAAGERRLIHTVRGVGYVL 221


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     E            +  ++  L    E   
Sbjct: 4   ILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVML--PKEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA   VP+I +S        +     G +D + KP +  E++ARV +     + 
Sbjct: 62  QVCRNLRAVKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +    +       +  +  +  + G    LP +E  +L +L  N     +K Q+F
Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+GL D   E + V  HI+++R+K+         +++    GY  
Sbjct: 182 EKIWGL-DAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRF 227


>gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 227

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLML--PEMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSPD 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +        P+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 VAESGAPTLAAGPVRMDIERHVVTVDGGTVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEPEPSAPRFIVTVRGLGYKFE 226


>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
 gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
          Length = 243

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 6   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLML--PKIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN  +                +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 232


>gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301]
 gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T]
 gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401]
 gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 301]
 gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 2457T]
 gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5
           str. 8401]
 gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella
           flexneri 2002017]
 gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2a str. 2457T]
 gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2747-71]
 gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-671]
 gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2930-71]
 gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-304]
          Length = 229

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIKMQGLSLNPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis FV-1]
 gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92]
 gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates Pi uptake (OmpR family) [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 229

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 225


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E               ++  +  +  +  ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 231

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A    I  +         +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N V +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
 gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++             +      E    +    + D++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEK-DIALLILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           E+ R IR +S+VP+I ++     +  L  FD GVD+ +                      
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+    G I +        V G+   L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 DAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR K+ +K   + + +   +GY  + +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIRTVWGMGYKFEVD 225


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G ++E     E    L +  + D+  ++  L   G   LE
Sbjct: 12  LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLML--PGVGGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R   +VP++ ++        +   + G DD V KP   R     + + +      
Sbjct: 70  VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +R+  D R   + G    L  RE  +L +L+ + G+  ++ ++   ++
Sbjct: 130 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G      + + V  H+ +LR+K+         +++   +GY  D
Sbjct: 190 GW--SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 231


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +   +  E    L      D+  ++  L        
Sbjct: 13  LLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVML--PDVDGF 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
           E+ R +R   +   ++ ++    ++  +     G DD V KP         +  V     
Sbjct: 71  EVTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  +    G V  L   E ++L YL+ N  + V+K QI   +
Sbjct: 131 STVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+    G   + +KR +GY +
Sbjct: 191 WD-YDFRGESGIVESYISYLRRKIDAD-GPPLIHTKRGVGYVL 231


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +  + +   +G                S+   D+  ++  L       +
Sbjct: 29  ILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVML--PSMNGV 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ +S        +   +SG DD +NKP   +E++ARV A  RR + 
Sbjct: 87  DVCRAIRKTSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +   G   +  G+  PL   E  +L  L +   + + + ++   ++G 
Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWG- 205

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +  +  V+  HI++LR K+  +      + + R +GY I
Sbjct: 206 YKQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKI 246


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E       S   D+  ++  L       LE
Sbjct: 6   LVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLML--PKIDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 64  VAKQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAT 123

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + A              +  D      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 VSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium DO]
 gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 234

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +          +G  +           L      D   ++  L    G ++
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGMEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     ++ P++ ++        +   + G DD + KP   RE+LAR+ AI+RR++
Sbjct: 64  TQRLRQ--EKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +                      V   +  L  +E  +L Y M  + + + +  
Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+  FD A +  +V+ H+S LR+K+  +      + + R  GY  
Sbjct: 182 LLDRIW-NFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKF 229


>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
 gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
          Length = 231

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A    +G         E            V  ++           E
Sbjct: 5   LIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVM--MPKLDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR  S VP+I I+        +   D G DD + KP    E++ARV AI RRL   
Sbjct: 63  VCRQIREESAVPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRLSRD 122

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  D     V GE  PL ++E  +L  L ANR K  ++  +  A++
Sbjct: 123 GGARLQFFSYRGLTIDLDTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           G +D   +   V+SHI +LR KL  +      + +   +GY  + N
Sbjct: 183 G-YDYYGDNRTVDSHIRRLRAKLDKRDHPGWSIATIWGVGYRFEVN 227


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +N   E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231


>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +         ++G  +   +  E      +S    +  +   ++      ++
Sbjct: 5   LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGID 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVAA 114
             R IR +S +P++ +S        +    +G DD + KP +           +      
Sbjct: 65  TCRRIRENSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++R     + +     +    G    L  RE  IL  L    G+  +   IF
Sbjct: 125 NVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSAEDIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V D   + F  +G ++    S E       +   D+  ++  L   G    
Sbjct: 4   ILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGL--PGIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P+I ++        +   + G DD V KP   RE++ARV A+ RR  
Sbjct: 62  GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121

Query: 121 VSNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++   +            ++ +  R    +     L  +E  +L YL ++ G+   +  
Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREV 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   ++G +DE V+   V+ HI +LR KL       + + ++  +GY  
Sbjct: 182 LLGQVWG-YDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL +D     +        +  ++    + E       +A  D+  ++  L   G   L
Sbjct: 14  IVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVML--PGMNGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R IRA S +P++ ++   +    L   D G DD V KP   RE++ARV   + R   
Sbjct: 72  TVCRTIRASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRRTNA 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V  +  +  V G        E RILE + +   +   + Q+   ++G 
Sbjct: 132 AKDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILEVMASRPDQVFTRAQLLEHLHG- 190

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           FD  + +  ++ H+  LRKK+  N      + +   +GY +
Sbjct: 191 FDRYITQRAIDVHVMNLRKKIETNPRKPAKLLTVYGVGYKL 231


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G S+   ++ E    L    + D++ I   ++       
Sbjct: 14  ILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQK-DIALIILDVMMPKMDGW 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E  R IR +SQVP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI  R   
Sbjct: 73  ETCRTIRKYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSNA 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  E G IR+        + G+   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 133 VSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNNVW-N 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   D + +   +GY  + 
Sbjct: 192 YDYFGDARTIDTHVKKLRSKMGEKG--DYIRTIWGMGYKFEV 231


>gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +              + +  +  ++  L        
Sbjct: 7   ILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIML--PKIGGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P++ +S        +     G DD + KP    E+ ARV A  RR   
Sbjct: 65  EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRFLK 124

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   +          I +  +  + +V G    L  +E  IL+  + N  K   K Q+F
Sbjct: 125 FSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTKNQMF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +I+G  +   +EN V  HI +LR+K+  +      + +   +GY +
Sbjct: 185 KSIWGE-NYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKL 230


>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 238

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         G  +      E    L  S   ++  ++  L   G    E
Sbjct: 14  LIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLML--PGVDGFE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R     P+I +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 72  ICRQVREQKNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQSL 131

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N+  E   I++    R   V GE      +E  +L +L  N      K ++F 
Sbjct: 132 TSGARSNNDIIEIRGIKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDELFK 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 192 EIWDM-ESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRF 236


>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 250

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
            ++++D  +++D  +    ++G  L+          L        + E    +   L+  
Sbjct: 21  ILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLMLP 80

Query: 57  GEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               L++ R++    + +P++ +S   S    +   + G DD + KP   RE++AR  A+
Sbjct: 81  QVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRAL 140

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S   +              E +     +   L  +E R+LE  M+   +  ++ 
Sbjct: 141 LRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWSRE 200

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 201 QLIEQIWG-PDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
 gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +       + G  ++          L      ++  ++  L        
Sbjct: 3   ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPL--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +L R +R     P++ ++    ++  +   + G DD + KP    E++ARV  +  R   
Sbjct: 61  QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++    R     GE   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR KL +      + + R +GY ++ 
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLEE 221


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +G ++                + D+  ++  L        
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVML--PRLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R  S+VP++ ++        +   + G DD V KP    E+LARV AI RR   
Sbjct: 64  SVCRILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDR 123

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G IR+ +  R          L ++E  +L  LM NRG  +++  +   +
Sbjct: 124 RISALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G +D   +   V+ HI  LR+K+  +      + + R +GY  +
Sbjct: 184 WG-YDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGYRFE 227


>gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 234

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 6   ILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLML--PRRNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           +  + IR  S VP++ +S   S          G DD + KP    E        I   V 
Sbjct: 64  DCLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N R +   + V       + +GE   L  +E +IL+  + +  K   K Q+
Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +++   D   +ENV+  HI +LR+K+ +       + +   +GY +
Sbjct: 184 YRSVW-NDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRM 230


>gi|307702057|ref|ZP_07639064.1| VncR, response regulator [Streptococcus mitis NCTC 12261]
 gi|307616544|gb|EFN95734.1| VncR, response regulator [Streptococcus mitis NCTC 12261]
          Length = 218

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGEEVAVNAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|300855893|ref|YP_003780877.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300436008|gb|ADK15775.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    +      + +  + D++ I+  L        
Sbjct: 4   IFLVEDDKEIAKNLVLLLRSEGFTVTHAPTRSDALAMLAGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    VP+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKEIQDVPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + +       +       L   E R+L   + N    + + ++   ++   
Sbjct: 122 SPSAFEVCGLHIDMASGVVKKDDSEVFLSALEYRLLLVFINNPKSIITRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ N       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 250

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKG 57
           ++++D  L+++  +     +G  +           L       S       +   L+   
Sbjct: 22  LIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLMLPQ 81

Query: 58  EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L++ R++    + +P++ +S   S    +   + G DD + KP   RE++AR  A+ 
Sbjct: 82  INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRALL 141

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + SN            +    E +         L  +E R+LE  M+   +  ++ Q
Sbjct: 142 RRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSREQ 201

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 202 LLDQVWG-PDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 249


>gi|227832502|ref|YP_002834209.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183632|ref|ZP_06043053.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453518|gb|ACP32271.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 86/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G+     N              D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAIAEMLTIVLEAEGLEPIAVNDGNEAIPAFREHDPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR+  
Sbjct: 63  DICRAIRTESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRIDG 122

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                           +       GE   L   E  +L  +    G+   +  +  +++G
Sbjct: 123 GTGEIIEVGDLLIDVPEHTVTRKGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
            +  A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 -YRHASDTRLVNVHVQRLRAKIEHDPEDPHIVLTVRGVGYK 222


>gi|218291330|ref|ZP_03495290.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238776|gb|EED05990.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 221

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         GV ++     E       S   D+  ++  L   G   ++
Sbjct: 4   LIVEDEPGLVEFLRLELELSGVEVDVAMDAETALERARSQAYDLLLVDIVL--PGMSGVD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ AI RR + +
Sbjct: 62  LCREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEAN 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G   V  D      +G+   L  RE  +L YL+ N  +  ++ ++   ++G F 
Sbjct: 122 GAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG-FQ 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              + NVV+ +I  LR+KL        + + R  GY ++ 
Sbjct: 181 APGDTNVVDVYIGYLRQKL--DPERRYIKTVRGQGYRLEV 218


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        DG  +E     +  +        D+  ++  L   G   +
Sbjct: 5   IMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWML--PGLSGI 62

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R +       Q+P+I ++        +    +G DD + KP    E+LARV      
Sbjct: 63  ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G I +  D R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYALD 226


>gi|119718738|ref|YP_925703.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119539399|gb|ABL84016.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 234

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G  +             S+A  DV  ++          LE
Sbjct: 12  LVVDDDKAVRESLRRSLEFNGYEVVLAADGAEALAGISAAAPDVVVMDVM--MPRLDGLE 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R A + +P++ ++   ++   ++  D+G DD + KP   +E+LAR+ A+ RR+  
Sbjct: 70  TTRALRTAGNDLPILVLTARDAVGDRVEGLDAGADDYLTKPFALQELLARLRALLRRVVP 129

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +         +    R+      V  L R E  +LE  +    + + ++ I   +
Sbjct: 130 HEDATDEMLSFSDLSMDVGTREVRRGERVIELTRTEFALLEMFLRRPRRVLERSFILEEV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     N +E ++  LR+K   +     + + R +GY +
Sbjct: 190 WG-YDFPTTANSLEVYVGYLRRKTEAEGEARLIHTVRGVGYVL 231


>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +G +++  +  E           D+  ++  L   G    
Sbjct: 4   ILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIML--PGISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           ++ + IRA   +P++ +S        +     G DD + KP    E+             
Sbjct: 62  DICKQIRAVHNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N+      I + +  R   V GE      +E  +L + + +  + ++K Q++ 
Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +G ++ A + + V  HI KLR+K+         +++    GY  + 
Sbjct: 182 RNWG-YESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGYRFNV 228


>gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator
           [Prosthecochloris aestuarii DSM 271]
 gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family
           [Prosthecochloris aestuarii DSM 271]
          Length = 236

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +   S E    L  S   D+  ++  L   G    
Sbjct: 6   ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIML--PGMDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----A 114
           E+ R +R H      P+I ++        +  F+ G+DD V KP   RE+  R+      
Sbjct: 64  EVCRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R  +          + V        ++G    L   E ++L  L+  RG+  ++  + 
Sbjct: 124 DRRGKREIQEVMTCDGLEVDISRHRVSLEGRELTLTLMEFKLLVVLLKRRGQAQSRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + D+++    +++HI++LR+KL        + + R LGY ++
Sbjct: 184 SDVWDV-DKSINTRTIDTHITRLREKLGQTG--RLIKTVRGLGYKLE 227


>gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
 gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
          Length = 230

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D +  ++        +G  +    + +         + D+  ++  L    G ++ 
Sbjct: 10  LVVEDESAQREVLQYNLEAEGFRVVMAVNGDEALLFLREEKPDLVVLDWMLPNVSGIEIC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++AR+    RR + 
Sbjct: 70  RRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMARLRTQLRRTRP 129

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + +        G+   L   E R+L  LM   G+   + Q+   ++G
Sbjct: 130 ATMGERLVFDDIILDAAEHRVFRDGQPLKLGPTEFRLLSTLMEKPGRVWTRDQLLDRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   ++ H+ +LRK L    G DPV + R  GYS+
Sbjct: 190 R-DIYVDTRTIDVHVGRLRKALMVNGGADPVRTVRGTGYSL 229


>gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +      E           D+  ++  L   G + L
Sbjct: 5   ILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLML--PGIQGL 62

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ +IIR +S +    +I ++        +   ++G DD + KP   RE++ARV A+ RR
Sbjct: 63  EICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMRR 122

Query: 119 LKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N   +   + +  +     V+G+   L   E ++L YL     K  ++  +  
Sbjct: 123 TLPAVSNNQIIKIKDLIIDKEKYLVTVKGQPKRLSATEFKLLLYLAERPNKIFSRDHLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           A++G  D  V+   V+ HI +LR K+ +     + + + R +GY I+
Sbjct: 183 AVWGQ-DIYVDPRTVDVHIRRLRLKIEDYPDNPEYIKTLRGIGYYIE 228


>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
 gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
          Length = 238

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDV---------SAIEA 51
            ++++D   +++        +G S+    +       LQ SAR            + +  
Sbjct: 5   LLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFALVVL 64

Query: 52  FLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--- 107
            L+  G   L++ R +RA S   P++ +S   S    +   + G DD + KP   RE   
Sbjct: 65  DLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMRELVA 124

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
               +         +    E   I+++ +       G    L  +E R+LE  M +  + 
Sbjct: 125 RCRALLRRSASQGAAEKVLEHANIKLYQEECRVTRDGLPVNLSPKEYRLLELFMQHPRRV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++ ++   ++G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 185 WSRDKLLEHVWGV-DYFGDSKTVDVHIRWLREKIEEEPSAPCHLVTVRGFGYRF 237


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     A F  DG      +            + D+  ++  L   G    E
Sbjct: 7   LIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLML--PGIDGWE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R  R    +P++ ++        L   + G DD V KP   RE++ARV        ++
Sbjct: 65  VCRRARKIGDIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRSHKI 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + + ++        E+  +   E +IL+ L  N+G+  ++ Q+   + G
Sbjct: 125 AAQPEPIKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +     E  ++ HI  +R+K+  N      + +   +GY  
Sbjct: 185 -YASEGYERTIDVHIKNIRRKIENNPKEPKYIITVYGVGYKF 225


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   + D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   +SG DD VNKP   +E++AR+ A  RR   
Sbjct: 63  DICRAIRQDSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTDD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +   G   +   E   L   E  +L  L     +   + ++   ++G 
Sbjct: 123 EPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D  I      G  +    +             D+  ++  L        
Sbjct: 6   ILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVML--PDMNGF 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
            + + +R A    P++ ++     +  +   ++G DD V KP          +       
Sbjct: 64  SVTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTM 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +   TG + +  D  D  V      L   E ++L YLM N  + ++K QI   ++
Sbjct: 124 QADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+K+        + +KR  GY +
Sbjct: 184 -EYDFNGDAGIVESYISYLRRKIDPHSSEPLIQTKRGFGYML 224


>gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
 gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++    +   +G       S +           D+  ++  L  G G ++
Sbjct: 13  ILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLPGGSGIQL 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 73  IKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVMRRIS 132

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 133 PMALEETITLQGLSLDPVSHRVMADEAPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 193 GT-NVYVEDRTVDVHIRRLRKALESSGHDRMVQTVRGTGYRF 233


>gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591]
 gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 243

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G         E  E         +  ++  L   G   L 
Sbjct: 17  LIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLML--PGRDGLT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR +  
Sbjct: 75  LCRAIRGFSNVPIIMVTARSDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134

Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +       +    +  +       G    L   E R+L+ L A  G+  ++ Q+   +Y 
Sbjct: 135 HEPLPNDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWE 236


>gi|257057242|ref|YP_003135074.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256587114|gb|ACU98247.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  ++  +         ++ R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLQFNGYQVDLASDGAQALEKVATDRPDAMVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVARRLRSVGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAG 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +T  +         + R+         L R E  +LE  M      +A+++I  
Sbjct: 121 QEGASGDTDVLTFADLTLNPNTREVTRGDRSISLTRTEFSLLELFMTYPKHVLARSRILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 EVWG-YDFPTSGNALEVYVGYLRRKTEAGGEPRLIHTVRGVGYVL 224


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +E     +       S   D   ++  L       L
Sbjct: 4   ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLML--PSLSGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
           ++ R IR      P++ ++   +    +   + G DD V KP   REI            
Sbjct: 62  DVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +     L  + N+   G I +  +       G    L  +E  +L Y     GK +++  
Sbjct: 122 SQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + + ++G FD   E  +V+  +S LR K+  +    D + + R  GY ++
Sbjct: 182 LLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230


>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  +E  N  E           D+  ++  L   G    
Sbjct: 4   ILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G   +  ++      L  +    +  ++  L   G    
Sbjct: 5   ILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQL--PGMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R IR + +VP++ +S        +  F+ G DD + KP             ++    
Sbjct: 63  ELCRQIRKNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYKR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + ++  V N       + +    R   V+ +      RE  +LE+L ++  +  +K ++
Sbjct: 123 LMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEVVFTTREFNLLEFLASHPNRVFSKNEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G+ D + +   V  H+ KLR+KL  +      +++    GY  
Sbjct: 183 FERIWGM-DSSGDIATVTVHVRKLREKLELDSSNPQYIETVWGAGYRF 229


>gi|229085934|ref|ZP_04218158.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228697370|gb|EEL50131.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLALVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFVSGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +     + +   +   LP +E  +L  L    G+  ++ ++   ++G+
Sbjct: 122 LSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWGI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ HI +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221


>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
 gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++I+D    ++        DG  +    + E    L      D+  ++  +    G +V 
Sbjct: 9   LIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          I + ++            L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 STVGMRLEFDDIILDAETHKVSRSDNSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQFGGADPVRTVRGAGYAL 228


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E           D+  ++  L   G    
Sbjct: 4   ILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIML--PGVNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQIRAVKNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N      I +    R   + GE  P   +E  +L +L+ +  + ++K Q++ 
Sbjct: 122 LAGKQTQTNTIFVHGITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+GL + A + + V  HI K+R K+  +      +++    GY  + 
Sbjct: 182 KIWGL-ESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGYRFNV 228


>gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
 gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
          Length = 227

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWML--PGVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--ARVAAIY 116
           EL R +R   +    P+I ++        +    +G DD V KP    E++   +     
Sbjct: 63  ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +V +     G I +  +      +     L   E R+LE+LM++ G+  +++Q+   
Sbjct: 123 AKPEVLSTVLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226


>gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 222

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   +     +       +   D+  ++  L   G   L
Sbjct: 6   ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLML--PGLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R  R  +  P+I ++        L   + G DD V KP   RE++ARV AI RR++ 
Sbjct: 64  SVCREARRFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVRG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   + +        ++G+   L   E ++L+ L    G+  +++Q+   IY   
Sbjct: 124 AP--VEERALMLDPSRYRAVLRGKPLELTAIEFQLLKILADEPGRIFSRSQLMDGIY-QD 180

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              V +  V+SHI KLRKK+       D + S   LGY  +
Sbjct: 181 HRIVSDRTVDSHIKKLRKKMTELFPDQDYIHSVYGLGYKYE 221


>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++    A    +G       S E    L+     D+  ++  L   G    
Sbjct: 6   IAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIML--PGMNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S+ P+I +S        +   + G DD + KP   RE++ARV    +R K 
Sbjct: 64  EFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQ 123

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + AE   I       + R     GE   +  +E ++L  L  +  +  ++ ++ S I+
Sbjct: 124 MKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD    + VV+  I ++RKKL        +++    GY +
Sbjct: 184 G-FDYFGSDRVVDDLIRRIRKKLDKIP----LETVWGFGYRL 220


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +             D+  ++  L       L
Sbjct: 6   ILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVML--PELSGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  +   P+I I+   S+   +   D G +D + KP    E+LAR+ A  R   
Sbjct: 64  EVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ET             RD +  G++  L  RE  +L +L+ ++ + + + Q+ +A
Sbjct: 124 HAQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 184 VWG-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E    +    R D+  ++  L       +
Sbjct: 5   ILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLML--PKMDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R  S  VP++ ++    +   +   D+G DD + KP   +E+++R+ AI+RR++
Sbjct: 63  QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +AE+    +       E +          L  +E  +L +L  +RGK +++ Q+  
Sbjct: 123 TLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLH 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++  +    +  +V+ HIS LR K+       + + + R +GY +
Sbjct: 183 GVWD-YHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    +         + D+  ++  L        
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLML--PKIPGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  S VP+I ++    ++  +   + G DD + KP   R     + A     ++
Sbjct: 66  RVCRTIRDTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    + G + +   G    V+G+   L   E ++L  L  + G+   + ++   +
Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 10  LLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIML--PDLDGF 67

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           E+ R++R    + P++ ++   +    +     G DD V KP    E+ AR+        
Sbjct: 68  EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRST 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 128 SGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ +      + + R +GY +
Sbjct: 188 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 228


>gi|317492809|ref|ZP_07951233.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918931|gb|EFV40266.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 241

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      G                     D+  ++  L+  G   L 
Sbjct: 18  LIVEDEPKLGQLLIDYLTAGGYQPHLLADGNAVLPYVHQTPPDLILLD--LMLPGTDGLT 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 76  LCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCVRR 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +  +      Q ++  L   E R+L+ L    G  +++ Q+ + +Y  + 
Sbjct: 136 TESNAEPMLIIDENRYQASFQDQLLDLTPAEFRLLKTLATQPGTVLSREQLLNHLYDDY- 194

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  V+SHI  LR+KL   + G   + S   +GY  +
Sbjct: 195 RVVTDRTVDSHIKNLRRKLEQLENGEPFIRSVYGIGYRWE 234


>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 82/221 (37%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   I     +   +    +      L    + D+  ++  L        
Sbjct: 5   ILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIML--PDMDGF 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + I   +  + +I ++        +   + G DD + KP    E+    +       
Sbjct: 63  QVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S+     GP RV  + +       +     RE  +++  + N  K   + +I + ++
Sbjct: 123 KQNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           G  D   +   V+ HI ++R+K+ +       +++    GY
Sbjct: 183 GE-DFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGY 222


>gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 243

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G         E  E         +  ++  L   G   L 
Sbjct: 17  LIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLML--PGRDGLT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR +  
Sbjct: 75  LCRAIRGFSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134

Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +       +    +  +       G    L   E R+L+ L A  G+  ++ Q+   +Y 
Sbjct: 135 HEPLPNDVLPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEVFDRETSFIRTVYGIGYRWE 236


>gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++           
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 70

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 231


>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 243

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++           
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVSK 125

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + N             +++ ++ R      E   L   E  +LE L++  G+  +++ I 
Sbjct: 126 NGNSGIPSSGVISVHTLKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSDIL 185

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233


>gi|307705285|ref|ZP_07642149.1| response regulator [Streptococcus mitis SK597]
 gi|307621167|gb|EFO00240.1| response regulator [Streptococcus mitis SK597]
          Length = 218

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMTAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 235

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    +      L      D++ ++  +        
Sbjct: 5   ILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPL--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
            L + IR     P+I IS   S    +     G DD + KP +          +   A  
Sbjct: 63  ALLKHIRTIHTFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRRANE 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   +    G + +           E  PL   E R+L+  M + GK   K  
Sbjct: 123 FNKPSVPEQPADTTTLGRLVLDHSSCTLLRGDEPIPLTALEYRLLKTFMLSPGKIFTKRH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +F  ++       ++N +   IS+LR+K+         + + R LGY  
Sbjct: 183 LFELVWSDL-YLGDDNAIMVQISRLREKIEEQPKQPRYIQTVRGLGYKF 230


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 10  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVML--PDLDGF 67

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           E+ R++R    + P++ ++   +    +     G DD V KP    E+ AR+        
Sbjct: 68  EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSA 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 128 SGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ +      + + R +GY +
Sbjct: 188 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 228


>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
 gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 85/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   +++        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLQLDPVSHRVTVGDAVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEEGGHDKLIQTVRGAGYRF 225


>gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis KIM 10]
 gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
 gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM
           10]
 gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis
           D106004]
 gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis
           D182038]
 gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
          Length = 239

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 235


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D         G ++   ++ +         + D+  ++      G   L
Sbjct: 13  ILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWM--MPGTTGL 70

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     ++ P+I ++      + +   DSG DD + KP   RE+++RV A+ RR
Sbjct: 71  ELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRR 130

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G +     G    + GE   L   E R+L++ + ++ +  ++ QI   
Sbjct: 131 IGREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQERVYSRGQILDY 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  V+ HI +LRK +      + V + R  GY  
Sbjct: 191 VWG-GNVYLDERTVDVHIRRLRKAISVAGHENYVQTVRGAGYRF 233


>gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 236

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++           
Sbjct: 16  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 73

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 74  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 133

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 134 IGSTQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 194 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 234


>gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        + +   +              +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLML--PGCDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR   
Sbjct: 71  TLCRTIRQFSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N+  +          +   G      G+   L   E R+L+ L    GK  ++  +   
Sbjct: 131 QNDGVKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti]
 gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
 gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 227

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWML--PGVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K          G I +  +      +     L   E R+LE+LM++ G+  +++Q+   
Sbjct: 123 AKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226


>gi|328553275|gb|AEB23767.1| yvrH [Bacillus amyloliquefaciens TA208]
 gi|328911939|gb|AEB63535.1| Transcriptional regulatory protein yvrH [Bacillus amyloliquefaciens
           LL3]
          Length = 235

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  ++    +  
Sbjct: 9   LIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILD--IMLPDGEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR   
Sbjct: 67  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                        P  +     +    G    L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 127 LQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+       D + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKF 230


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G  +    +         ++  DV  ++           
Sbjct: 12  ILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVM--MPELDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +   IRA S+VP+I ++    +   +     G DD + KP   +E+ AR+  + RR   
Sbjct: 70  AVTERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSS 129

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +++    G + +  + R      E   L   E  +LE L++  G+ +++
Sbjct: 130 VQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISR 189

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +   ++G   + + +  VV+ HIS+LR KL +     + + + R LGY  
Sbjct: 190 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMF 241


>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
 gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
 gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
          Length = 225

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LARV     R   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDDFPIKLIHTVRGVGYVLE 220


>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 82/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D            +    +           + D+  ++  L       L
Sbjct: 4   ILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQL-VKQPDLVILDLML--PDIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
            + + IR     P+I I+   + Q  +     G DD + KP +        +   R    
Sbjct: 61  SICKSIRKKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y              + +    +   +  +   L   E +ILE L+  +G+ ++  ++F+
Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELFN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+     +   N +  H+  LR+K+ +     + + +   +GY I+
Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYIIE 227


>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 224

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   N           ++ D+  ++  L   G   +
Sbjct: 5   ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWML--PGFSGV 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P+I ++    +   ++  D+G DD + KP    E+LARV A  RR +
Sbjct: 63  EVCRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +           +       +      L  +E  +L YLM +  + + + +I   ++G
Sbjct: 123 EEDPDVLEFSNLTLNQRTREIFRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENQEKRLIQTVRGVGYVM 222


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        DG  +    + E    +      DV  ++  +    G +V 
Sbjct: 9   LIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR + 
Sbjct: 69  RRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRSRP 128

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S    R E G I + ++        ++  L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 SAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQFGGDDPVRTVRGAGYAL 228


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G      +  +           D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKQLRATSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGE 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +   E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + Q+
Sbjct: 122 AAEVDEEFEDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              I+G  D   +   ++ H+ +LR K+         + + R LGY  + 
Sbjct: 182 IDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKYEV 230


>gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 250

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D  +     +    +    +      L  +   D+  ++  L       
Sbjct: 17  ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVML--PDIDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++  P++ ++   S    L     G DD + KP +  E+ AR+    R   
Sbjct: 75  FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRGQS 134

Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  N  +     +  +              G+      +E  +L +L  +  +     Q+
Sbjct: 135 MLLNNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++GL     ++  V  HISKLRKK+  +      + + R +GY  
Sbjct: 195 YEQVWGLT-SMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKF 241


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         E    L      D+  ++      G   L
Sbjct: 4   IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDI--EMPGMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+   +P+I +S   S    +  F+ G DD + KP    E+ AR+ A  R   +
Sbjct: 62  EVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAM 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +      +   G + +  +    EV+GE   L  +E ++L +   +  +     Q++  I
Sbjct: 122 NPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + L D       V+ HIS LR+K+       + + + R  GY  
Sbjct: 182 WNL-DATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRF 224


>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 248

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++        +G  +    +      L  + + D+  ++       +   
Sbjct: 13  ILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLM--MSKKDGW 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I +R   
Sbjct: 71  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E   ++++   R   V      L  +E  +L  +  +  +  +++Q+
Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              I+  F+     + V   +S+LR+KL         + +   +GY  + N
Sbjct: 191 LELIWD-FEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPN 240


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E       S   D+  ++  L       LE
Sbjct: 16  LVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLML--PKIDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 74  VAKQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAT 133

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + A              +  D      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 134 VSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 194 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 239


>gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis HI4320]
          Length = 229

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++    +   +G         +           D+  ++  + G  G +V
Sbjct: 5   ILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++  +       +P+I ++     +  +   ++G DD V KP   +E+    +       
Sbjct: 65  IKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRLS 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  E   + +         Q +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEQDGHDRMIQTVRGTGYRF 225


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   S             D++ ++  L        
Sbjct: 5   ILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
           EL R IR+    P+I ++   + Q  +     G DD V KP          H ++    +
Sbjct: 63  ELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R     +   +   + +  D R   V G    L   E  IL YL+ +RG  VA   +
Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F A++         N V  HI  LR+K+ +       + +   +GY I+
Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYIIE 231


>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G              +   ++ D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLML--PGLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   IRA S  P+I ++        +   +SG DD + KP + +E+    R       +
Sbjct: 63  EVCSSIRAESGTPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + V   G +         L   E  +L  L A   +   +  +   ++G
Sbjct: 123 APPAEQLCIGDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 183 -YHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGYR 222


>gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis
           z3032]
 gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter
           turicensis z3032]
          Length = 226

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G+ ++          L       +  ++  L   G    
Sbjct: 3   LLLIEDNDKTRAWLEKGLREAGLVVDAVADGRDGLHLALEHDYALIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++   ++   +   + G DD + KP    E+LARV A  RR   
Sbjct: 61  QVLRALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHTP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   + + +        GE   L R+E  +L  L +  G+ + +T I S ++G+ 
Sbjct: 121 AAATLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E NVV+  I +LRKK+ +      +++ R +GY ++
Sbjct: 180 NFDSETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219


>gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 225

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  N       L      DV  ++  L   G    
Sbjct: 3   ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +RA    P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  TVVKTLRAKRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R  +  G    L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDDFPVKLIHTVRGVGYVLE 220


>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +         ++G  +   +  E      +S    +  +   ++      ++
Sbjct: 5   LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGID 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVAA 114
             R IR  S +P++ +S        +    +G DD + KP +           +      
Sbjct: 65  TCRRIRETSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++R     + +     +    G    L  RE  IL  L    G+  +   IF
Sbjct: 125 NVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSAEDIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 232

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R +R    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
 gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
          Length = 273

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G         E  E         +  ++  L   G   L 
Sbjct: 47  LIVEDEPKLAQLLVDYLQASGYHTHWLTQGEEVEPWVREHPCQLILLDLML--PGRDGLT 104

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR +  
Sbjct: 105 LCRAIRGFSNVPIIMVTARTDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 164

Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +       +    +  +       G    L   E R+L+ L A  G+  ++ Q+   +Y 
Sbjct: 165 HEPLPGDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 224

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 225 DY-RVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWE 266


>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
          Length = 242

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +       D+G  +      +    L      D   ++  L   G   L
Sbjct: 11  ILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLML--PGVDGL 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P+I  S   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 69  DICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQE 128

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          GP+ +    R   V      L  RE  +L +   + G+  ++ Q+
Sbjct: 129 AMGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 189 LDKVWG-YQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYKF 235


>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPGSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G                S    D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    + +   E G +R+  D     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 225

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  N       L      DV  ++  L   G    
Sbjct: 3   ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  GVVKTLRTTRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R  +  G    L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDNFPVKLIHTVRGVGYVLE 220


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D         G ++    + +           D+  ++           
Sbjct: 4   ILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIM--MPDIDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E+ R IR     P++ +S   S    +  F  G DD V KP             +     
Sbjct: 61  EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           AI    +          I +    R+  V+G    L ++E  +LE L  + G+  +K QI
Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +  ++G FD   +   V  HI  +R K+ N     + + +   +GY  + 
Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLML--PKLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR+ V
Sbjct: 62  DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQI 173
           +   +     +    G                      RE  +L YL  + G+ + +  +
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       V ++R +GY +
Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + +++    +   +G         E    +      DV+     ++   +  L
Sbjct: 5   ILIADDDSNIRELLRFILQREGFRALEAADGEEASRVMRQE--DVALAIVDVMMPEKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR    +P++ ++    L      F SG DD + KP    E+L RV A+ RR ++
Sbjct: 63  MLCEEIRRDYDIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRRYRI 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   + G   V     +  V GE  PLP +E  +L  L +  G+   + Q+   I+G 
Sbjct: 123 VSSEKLQLGGTTVDRHSYEVNVHGENVPLPLKEFELLAQLASQPGRIFTREQLLRPIWGA 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
            D   ++  ++ HI +LR++           + + R LGY ++
Sbjct: 183 -DYEGDDRTIDVHIKRLRERFAPFGLSAGFAITTVRGLGYKLE 224


>gi|171779215|ref|ZP_02920186.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282271|gb|EDT47698.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 225

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G   +GF   +      S  + D+  ++  L   G   
Sbjct: 1   MIYCVEDDDDIRELMLYTLKTAGFEAQGFPDGDDFWQAISIQQPDLILLDIML--PGSDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115
           L +   +        +P+I  +   +    +   D G DD + KP    E+++R+ A   
Sbjct: 59  LAILEKLEQTPTTAGIPVIMATAKGTEYDKVKGLDMGADDYLVKPFGMMEMISRIKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   + G + +       +   +V  L  +E  +L  L+ N  +   +  +  
Sbjct: 119 RSEKGHVSKILKLGNLSLDVQNYVVKKDNQVIHLTLKEFELLALLLKNPNRVFTRQDLLK 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D   E   V+ HI  LR KL +      + + R +GY ++
Sbjct: 179 QVWG-DDFLGETRTVDVHIGTLRTKLGDAGH--YIQTIRGVGYRLE 221


>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 265

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++      F  +G ++   +  E    + S    D++ ++          L 
Sbjct: 48  LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 105

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A        
Sbjct: 106 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 165

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   ++G 
Sbjct: 166 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 224

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 225 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 264


>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 236

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G                   + D+  ++  L       LE
Sbjct: 5   LIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLML--PELDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +  
Sbjct: 63  VAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETI 122

Query: 123 N------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G +++  D    +  G    L  RE  +L +L  + G+ + +
Sbjct: 123 ETAVAEENAISGTQELTIGNLQILPDAFVAKKYGNEVELTHREFELLHHLANHIGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|320160939|ref|YP_004174163.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994792|dbj|BAJ63563.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 228

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +   +           L    + D+  ++  L       +
Sbjct: 11  ILLVEDDPAIIQLVALGLRMEKFEVITAIDGREGFQLFLEKKPDLLIVDWML--PKMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P+I I+   ++Q  ++  D+G DD + KP H  E+LARV A  RR   
Sbjct: 69  TLCRKIRELSDLPIIIITAKDAVQDRVEGLDTGADDYLVKPFHLDELLARVRARLRRRLP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++     +    +  +      +      E+++LE  + +  + ++K  I   ++G +
Sbjct: 129 ISHQLIFSDLSFDLETHEFFRGKRLLHFTATEQKVLELFLRHPRQVLSKETILEKVWG-Y 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + N+VE +I  +R+KL      + + + R LGYS+
Sbjct: 188 DFGGDANIVEQYIRSIRQKL---GEPNLIQTIRGLGYSL 223


>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 235

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + +         G ++   ++ +           D+  ++  L       +
Sbjct: 5   ILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLML--PDIDGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115
           ++ + I++      +P+I ++        +   + G DD + KP   RE    +  V   
Sbjct: 63  DVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +     N   + G I + ++        E+  L  +E  +L+ L  NRGK + +  +  
Sbjct: 123 SKNETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 183 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKL 227


>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
 gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
          Length = 230

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +      + G + +       E  G++  L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 229

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N              D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLML--PGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + SN   E   +++    R   + GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       ++G  ++  ++ E           D+  ++  L    +  L
Sbjct: 3   ILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIML--PVKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R +    P++ ++   S +  +   ++G DD + KP    E+LAR+ AI RR  
Sbjct: 61  KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N         + +     E  G+   L  RE  +LE+LM +  + +++T+I   ++ 
Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   E N+V+ +I  LRKK+ N      + +   +GY I
Sbjct: 181 L-DFYTESNIVDVYIRYLRKKIDNGFENKLIHTVHGVGYMI 220


>gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
          Length = 231

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++          G  ++  + ++    L +  R D+  ++  L  G G   
Sbjct: 6   ILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPDGDGVSW 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A + +P+I ++           F  G DD + KP   RE++AR+ A  R   
Sbjct: 66  IAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHARLRHRV 125

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  + G +++  D +              E ++L +LM +  +  ++ Q+   +
Sbjct: 126 QAALPVSLIQMGNLQLNPDTQRVNAGSLHLECSSSEFKLLHFLMQHPERVFSRRQLLDHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  VEE  V++ I +LR+ L        + + R  GY  
Sbjct: 186 WGE-DAFVEERTVDTQIGRLRRLLETANIGHYIQTVRGSGYRF 227


>gi|307709530|ref|ZP_07645985.1| response regulator [Streptococcus mitis SK564]
 gi|307619723|gb|EFN98844.1| response regulator [Streptococcus mitis SK564]
          Length = 218

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDAKVDFESYSASLAGEEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|160894855|ref|ZP_02075629.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50]
 gi|156863286|gb|EDO56717.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50]
          Length = 239

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S E   S    + L +      + +   L+  G    
Sbjct: 16  ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    R  + 
Sbjct: 76  AVLEEIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHTEE 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      R     +              + R+E  ILE L+ N  +  +K  IF   
Sbjct: 136 KEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIFEYA 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 196 WDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237


>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G                S    D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    + +   E G +R+  D     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G ++E     E    L +  + D+  ++  L   G   LE
Sbjct: 15  LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLML--PGVGGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R   +VP++ ++        +   + G DD V KP   R     + + +      
Sbjct: 73  VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +R+  D R   + G    L  RE  +L +L+ + G+  ++ ++   ++
Sbjct: 133 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G      + + V  H+ +LR+K+         +++   +GY  D
Sbjct: 193 GW--SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 234


>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +      +         + D++ ++          L
Sbjct: 3   ILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVM--MPQLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
            + R +R+     P++ ++    +   +   D+G DD + KP             +    
Sbjct: 61  GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A   ++     +      + +    RD         L R E  +L  L+ N  K + + +
Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  +     N +E +I  LR+K         + + R +GY +
Sbjct: 181 ILEEVWG-HEFPSSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVM 227


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 9/228 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + ++I+D   + +        +G      +         +  + D+  ++  L    G  
Sbjct: 3   VILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAA 114
           V +  R     S +P++ ++        +  F+ G DD V KP   RE++          
Sbjct: 63  VCKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRN 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G I + ++     V G+       E ++L  L+   G+  ++  + 
Sbjct: 123 ANANSPAESAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G ++   +   V++H+++LR K+      D + + R  GY ++ 
Sbjct: 183 RDVWG-YNFVEDTRTVDTHVTRLRTKMGEAG--DMIKTVRGFGYKLEV 227


>gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G + +    + +      S    D+  ++  L       
Sbjct: 6   ILIIDDEPGIVKMLETILRKEGYTSISSAFTGQEAMEKISRNLYDLIVLDVML--PDTDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
             L + IR H+ VP++ ++        L     G DD + KP +         +  R   
Sbjct: 64  FRLCQEIRRHTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRLE 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y+    +      GP+ +        V G+  P P +E  +L +L  +  +     Q++
Sbjct: 124 QYQNAGQTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G +D   +E  V  HI +LRKK+  +      + + R +GY  
Sbjct: 184 EHIWG-YDSIGDEKTVSIHIMRLRKKIERDAKNPSLIVNIRGIGYKF 229


>gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL
           J2-003]
          Length = 225

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
 gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
          Length = 230

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 229

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +   N+ +    +      D+  ++  +    G + 
Sbjct: 8   ILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
             L R I       ++ ++      + +  F+ G DD + KPI  R     I A +    
Sbjct: 68  CRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRNS 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +VS+N+ E G + +  +       GE   L ++E  +L  L +  GK   +  I   
Sbjct: 128 SSDEVSDNKVEIGDLVIDREAYLVFQNGEKVVLAKKEFELLYLLASKPGKVYTRESILKN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+      V    ++ HI KLR+KL        V + + +GY  +
Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKLGE----RYVATVKGVGYKFE 227


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++    S             D+  ++  L        
Sbjct: 7   ILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVML--PDMNGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
            + + +RA     P++ ++     +  +     G DD V KP          +       
Sbjct: 65  GVTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +  D  +  +  E   L   E ++L YLM N  + ++K QI   ++
Sbjct: 125 QDDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+KL        + +KR  GY +
Sbjct: 185 -EYDFNGDAGIVESYISYLRRKLDIHTEEPLIQTKRGFGYML 225


>gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 231

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            V+I+D   + +         G         +    L  S R D+  ++  L    G  V
Sbjct: 5   IVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTDV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  +     + +P+I ++        +  F+ G DD V KP   RE++ R+  + RR  
Sbjct: 65  CKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRNV 124

Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +             +     V G    L   E  +    + N GK +++ Q+ S  
Sbjct: 125 NILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLSNA 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LRKKL      D +++ R +GY +
Sbjct: 185 WG-YEFEGYSRTVDTHVRRLRKKLGPY--ADWLETVRGIGYRM 224


>gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 244

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G   E            +    D   ++  L   G   L
Sbjct: 17  ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVML--PGIDGL 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R I+A   VP++ ++        L     G DD + KP   R            + R
Sbjct: 75  EVCRRIQAERPVPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDR 134

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A        +      G + +    R      +   L   E  +L  L ++      + 
Sbjct: 135 AAQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRE 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + ++   D +     V+SHI  LR+KL    G D + +   +GY+ +
Sbjct: 195 RLLAEVWDWADASG-TRTVDSHIKALRRKL----GADLIRTVHGVGYAFE 239


>gi|289167540|ref|YP_003445809.1| response regulator [Streptococcus mitis B6]
 gi|288907107|emb|CBJ21941.1| response regulator [Streptococcus mitis B6]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRVFSYKDTKVDFESYSASLSGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++             +   D+  ++  L        
Sbjct: 4   ILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIML--PKLHGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + I+     P++ +S        +     G DD + KP    E++ARV A  +  + 
Sbjct: 62  NVMKSIQDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKNYER 121

Query: 122 SNNRAETGPIRVFS---------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N+  + P                R   + G+   L ++E  +L YL+ N  +   + +
Sbjct: 122 LKNKFGSKPQDNDIIIRGLQVKKPSRQVFINGKEVNLTQKEFDLLLYLVENPNRVFGREE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F  I+GL +   +   +  HI ++R K+  N      +++    GY  
Sbjct: 182 LFERIWGL-EALGDNATITVHIGRIRDKIESNPSEPQYIETVWGAGYRF 229


>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 252

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54
            ++++D  +++D  +    D+G  +   N+      L             +   +   L+
Sbjct: 21  ILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDLM 80

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++    + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  LPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 140

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR  ++N+ + +            E +     +   L  +E R+LE  M+   +  +
Sbjct: 141 ALIRRQNLTNSSSSSVKQFRDIILYTQECRVTVGEQEIALSPKEYRLLELFMSYPRRVWS 200

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 201 REQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEQDPSQPEYLITVRGFGYRF 251


>gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 222

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G      +       L      D++ ++          +
Sbjct: 3   ILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVM--MPKMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +     VP++ ++   +L      F +G DD + KP   +E+L RV AI RR + 
Sbjct: 61  TLTKNLVEIG-VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQK 119

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +     + +V  +V  LP +E  +L  L +       + Q+   ++G 
Sbjct: 120 TERSQIKIANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   ++  + +HI +LR +L        + + R +GY I+ 
Sbjct: 179 YDYDGDDFTLTTHIKRLRSRLEEVNAQVKIQTVRGIGYKIEE 220


>gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273]
 gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273]
          Length = 247

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++   ++ E    + ++    ++ ++          +
Sbjct: 21  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVM--MPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 79  ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  +   R +     +I
Sbjct: 139 FNQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    L  ++G  +   ++    E +     +D+  ++      G    +
Sbjct: 6   LIVDDNKEIREVVNVLLSNEGYIVNEADNG--AEAITKCEAQDLIILDIM--MPGMDGFK 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR  + VP++ ++     Q   D F+SG DD + KP  + E+L+RV A+ RR  V 
Sbjct: 62  TCRRIRELTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVY 121

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E   ++V  +     V  E   L   E RIL+ L+ N  +  +  +++
Sbjct: 122 RGKSNIEESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
            +I+         N +  HI  LRKK L +      + +    GY  D
Sbjct: 182 ESIWDESYLYTANNTIMVHIRNLRKKLLVDPSNPKYIRTIWGKGYRFD 229


>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
 gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
          Length = 230

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E       +   D+  ++  L   G    
Sbjct: 5   ILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLML--PGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQIRGQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L  +     +K ++F
Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
           [Geobacter uraniireducens Rf4]
 gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter uraniireducens Rf4]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G +++  N  E    L  S   D+  ++  L   G    
Sbjct: 3   ILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVML--PGVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           ++ + IR      P++ ++   ++Q  +   + G DD + KP    E+LAR+  I  R  
Sbjct: 61  QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +   G      G+   L  +E  +L  L    G+ + +T+I   I+ 
Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   + NVV+ H+ +LR K+ +      + + R +GY ++ 
Sbjct: 181 I-DFESDTNVVDVHMRRLRAKVDDPFEHKLIHTVRGVGYVLEE 222


>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYAQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ +    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
 gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++   + E        +   +  +   ++  G   +
Sbjct: 5   ILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVDDS---LDLVILDVMMPGISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +RA S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  V
Sbjct: 62  ETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            V  +  +     +   L   E R+L+ LM+ R K  +   I+
Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPVYIKTEWGRGYRF 228


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54
            ++++D  +++D       + G  +   +       L          +  D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++   ++ VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   +N  +              E +     E   L  +E R+LE  M+   +  +
Sbjct: 139 ALIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249


>gi|54026584|ref|YP_120826.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018092|dbj|BAD59462.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDMALAEMLTIVLRGEGFDPHVVGDGTQALAAVREIRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR + 
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIVKPFKPKELVARVRARLRRTEE 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +          G+   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAELLSIADIVIDVPAHKVTRGGQQISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRAKVEKDPENPEIVLTVRGVGYK 221


>gi|332204624|gb|EGJ18689.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +      SS   +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALDQFSS--YEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 226

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++I+D   + +        +G                     D+  ++  L    G +V 
Sbjct: 5   LIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMGTEVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ +     +++P+I ++        +  F+ G DD V KP   RE    +  V      
Sbjct: 65  KILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSLP 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S      GPI +  D     V GE   L   E ++L  L    G+  ++  +   ++
Sbjct: 125 DEPSGKTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLKNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V++HI++LR KL      D + + R  GY ++ 
Sbjct: 185 G-YNYVGDTRTVDTHITRLRTKLGPAG--DLIKTVRGFGYKMEE 225


>gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161]
 gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A    +G  ++  N       +      DV  ++  L   G    
Sbjct: 3   LLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIML--PGMNGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +R    + P++ ++         D  D G DD + KP     + AR+ A + R +
Sbjct: 61  QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G + +    +          L  +E  +LEYL +  G+ V+KT++   ++ 
Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F    + N+VE +IS LR+KL    G   + + R  GY +
Sbjct: 181 -FAYDGDVNIVEVYISYLRRKLDAPFGRQAITTLRGAGYRL 220


>gi|322377335|ref|ZP_08051826.1| DNA-binding response regulator VncR [Streptococcus sp. M334]
 gi|321281535|gb|EFX58544.1| DNA-binding response regulator VncR [Streptococcus sp. M334]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G  +      +      SS    +  ++          L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYEIIEAADGQEALEKFSSYEVTLVLLDI--QMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G+  +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIML--PGQDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYTQP 124

Query: 124 NRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++               ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 SQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     D + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGY 227


>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
 gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M   ++D + +++  I      G    GF   +      +    ++  ++  L    G +
Sbjct: 1   MIFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
           +L   +    +  +P+I ++   +    +   D+G DD V KP    E+++R+       
Sbjct: 61  LLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRT 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +   +    G I + +   +    GEV  L  +E  +L+ LM N    + +  +  
Sbjct: 121 QKDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL        +++ R +GY +
Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGKSGEK--IETVRGVGYRM 222


>gi|307706889|ref|ZP_07643691.1| response regulator [Streptococcus mitis SK321]
 gi|307617762|gb|EFN96927.1| response regulator [Streptococcus mitis SK321]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F    D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFAFLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                     +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 MGRVFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G ++    S E    +  S +  +  ++  L   G    
Sbjct: 5   ILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIML--PGVDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            + +++R     + +I ++        +     G DD + KP +       I +    + 
Sbjct: 63  AVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   N     P ++    R      E   L   E +I++  M N  K + + +I   
Sbjct: 123 PEEENDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G  D   +  +V+ +I +LR K+       + +++   LGY 
Sbjct: 183 VWGN-DFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYR 225


>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
 gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   ++++D   +            + +      E           D+  ++  L     
Sbjct: 20  MIHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQKLQERPYDLVLLDITL--PDG 77

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               +   ++   Q P+I ++      + +  FD G +D + KP   RE+++R+  + R 
Sbjct: 78  SGYSVCNAVKRDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRH 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +N      +RV  D        +   L   E R+L   + NRG+ ++++Q+  A +
Sbjct: 138 TKRQSNIERVQDLRVDLDSGRVFKGEQELSLSAMEYRLLGIFLENRGRILSRSQLLEAAW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               + V +N +  +I +LR+K+  +      + + R LGY ++
Sbjct: 198 DFAGDYVNDNTLSVYIKRLREKIESDPQNPTMIRTVRGLGYRME 241


>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 262

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 44/261 (16%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +        +G         +         + D+  ++  +   G   L
Sbjct: 3   ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMI--PGLDGL 60

Query: 62  ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+    R         ++ ++        +    +G DD + KP   RE++ARV A+ RR
Sbjct: 61  EVCARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRR 120

Query: 119 LKVSNNRAETGPIRVFSD-------------------------------------GRDPE 141
               +++  T                                                 E
Sbjct: 121 SLRGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLE 180

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +      L   E  +L   M+  G+   ++Q+   ++G  D   +E VV++HI++LRKK+
Sbjct: 181 IAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGE-DFFGDERVVDTHIARLRKKI 239

Query: 202 R-NKLGFDPVDSKRFLGYSID 221
             +      V +   +GY  +
Sbjct: 240 EPDPSAPTFVKTVVGVGYRFE 260


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 6   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R +R    +P+I ++   S    +   + G DD V KP   R         +     
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHTQ 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +      N    G + +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 124 IVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230


>gi|163816389|ref|ZP_02207755.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759]
 gi|158448386|gb|EDP25381.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S E   S    + L +      + +   L+  G    
Sbjct: 16  ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALMLLDLMLPGITGE 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    R  + 
Sbjct: 76  AVLEEIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHTEE 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      R     +              + R+E  ILE L+ N  +  +K  IF   
Sbjct: 136 KEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIFEYA 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 196 WDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237


>gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKLEIP----YIKTVKGIGYKIE 220


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGNDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016]
 gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTALAGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKEMQDLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   + V       +  G    L   E R+L   + N    V ++++   ++   
Sbjct: 122 SPRAFEICGVHVDMASGVVKKNGSEVFLSALEYRLLLVFINNPKSIVTRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ N       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       + + D+  ++  L    +  ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVML--PKKDGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           + + +R +   VP++ ++        +   + G DD + KP   RE+      + R +  
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + ++  ++    G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +                + D+  ++  L        
Sbjct: 5   ILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIML--PQIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P++ +S        +     G DD + KP    E++ARV +  +  + 
Sbjct: 63  SILHSIQEEKDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR--------RERRILEYLMANRGKRVAKTQI 173
              +    P            Q                +E  IL +L  N  +  +K  +
Sbjct: 123 IKGKFVKPPKNNIIIRGLEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKEDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+GL D   + + V  HI ++R+K+  +      +++    GY +
Sbjct: 183 FEKIWGL-DAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRL 229


>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 232

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A V D        +G  +      +    +  S   D+  ++           
Sbjct: 6   ILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR  +
Sbjct: 64  EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 ++ + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKAEDNKSVLEIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEDYYEG-RNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
 gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +     S EF E +      D+  ++  L   G   +
Sbjct: 5   ILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWML--PGMDGV 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  + IR  S   ++P+I ++        L   + G DD + KP   +E++AR+ AI RR
Sbjct: 63  EFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       + +           ++  +   E ++L + M+N     ++ QI   
Sbjct: 123 NAPELVNEPINMNGLELDPIKYVLTNNDKIISIGPTEFKLLNFFMSNPNIAFSRNQILDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G     +++  V+ HI +LR  L++      + + R LGY ++ 
Sbjct: 183 VWGNK-SDIDDRTVDVHIKRLRDTLKHTGQHSLIKTVRGLGYRLEK 227


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 88/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + E    L       +  ++          +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            +   +R  +++P+I +S        +    +G DD V KP +          ++   + 
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  E G +++        +  +   L  RE  ILE L  N+G  ++  QI
Sbjct: 124 MNGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  ++   +    +N V  HI K+R+K+         V +   +GY I+ +
Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 247

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD A ++          G  +    +         +   D+  ++          
Sbjct: 10  IILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVM--MPKLDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++
Sbjct: 68  YGVIQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVE 127

Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +    R+ ++ R      E   L   E  +LE L++  G+  ++ +I
Sbjct: 128 KEQIAGLPNSGVIQVAAFRIDTNRRKVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEI 187

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 188 LKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
 gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
          Length = 239

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +          +G   ++   + +           DV  ++  L       
Sbjct: 9   ILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIML--PDMDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S  P++ +S        +    SG DD + KP   +E++ RV A  RRL+
Sbjct: 67  IEVCRAIREFSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +         R   G + +  DG      G    L  RE  IL YL  N GK ++K ++
Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G    AV +N +  HI  LR+K+  +      + + + LGY +
Sbjct: 187 YEQVWGEL-SAVCDNTIMVHIRHLREKIEKDPSRPALILTVKGLGYRM 233


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L    +  +  ++          +
Sbjct: 6   ILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  +++P+I ++        +     G DD V KP +  E++AR+ +  RR   
Sbjct: 64  KMCMKVREVAEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLK 123

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +    +          R+ +   +  V  E   L  RE  ILE L++N G  ++  QI+
Sbjct: 124 MSGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++   +    EN V  HI K+R+++         + +   +GY ++ 
Sbjct: 184 EKVW-KEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGYKVEK 231


>gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland
           1988]
 gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S]
 gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
 gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++      F  +G ++   +  E    + S    D++ ++          L 
Sbjct: 6   LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A        
Sbjct: 64  VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRTGTL 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   ++G 
Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 183 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 222


>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
 gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
          Length = 230

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + +    + G + +       E  G++  L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 80/225 (35%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++G  ++   +             D+  ++  L   G   ++
Sbjct: 13  LVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLML--PGIGGMD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV-----NKPIHHREILARVAAIYR 117
           L + I+    +P+I ++        +   + G DD V      + +  R           
Sbjct: 71  LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRIKDE 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G I +        +      L   E +IL   M N G    + ++   +
Sbjct: 131 EEDEFEGNITIGNIFLNLKAHKAFINNSEVDLTLIEYKILNLFMTNPGVAFTRDKLLDRV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  D  V +  V+ +I +LR KL +    + +++ R +GY  + 
Sbjct: 191 WGK-DIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFNE 232


>gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-272]
 gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-227]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 IWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +          +G  +           L  + R D+  ++  L   G   +
Sbjct: 5   ILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIML--PGFSGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    Q P++ ++   S++  +   D G +D + KP    E+LAR+ A  R   
Sbjct: 63  EILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKS 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            ++    R+     +   L  RE  +L YLM N+ + + + QI 
Sbjct: 123 AGTEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++G +D   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 183 EAVWG-YDFLGDTNVVDVYIRYLRKKIDMPERPALIHTIRGVGYVL 227


>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 243

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G   E             S   D+  ++          L 
Sbjct: 12  LIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDI--QMPRMDGLT 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R IR+  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +    P          R+  + R+         L R E  +LE  +A+  + + + Q
Sbjct: 130 AAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 190 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +          +G  +      E    +    + D+  ++  L    G +V 
Sbjct: 24  LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +P+I ++        +   D+G DD + KP    E+ AR+ A+ RR++ 
Sbjct: 84  RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIRP 143

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + ++   G + V          G+   L   E R+L+YL+ + G+  ++ ++  A++G
Sbjct: 144 GLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAVWG 203

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ H+ +LRK L+ +   DP+ + R  GY+++
Sbjct: 204 -SDIYVEARTVDVHVGRLRKALKMEGLVDPIRTVRSAGYALN 244


>gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 238

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +   +G   E  ++      + +  + D+  ++  L   G   L
Sbjct: 5   ILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLML--PGLDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----- 113
           E+   IR  S      ++ ++        +    +G DD + KP   RE++ARV      
Sbjct: 63  EVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALLRR 122

Query: 114 ----AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                    L               +       + E+  L   E ++L+  ++  G+  +
Sbjct: 123 SLRGEQSDHLLYRTESFTVDVEHHIAQRHLSGQEAEMLDLTSLEFKLLQTFLSYPGRAWS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +TQ+   ++G  D   ++ VV++ +++LRKK+  N      + + + +GY  +
Sbjct: 183 RTQLIDNLWGN-DFFGDDRVVDTQVARLRKKIEVNPTQPQFIKTIQGVGYKFE 234


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     E            +  ++  L    E   
Sbjct: 4   ILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVML--PKEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA   VP+I +S        +     G +D + KP +  E++ARV +     + 
Sbjct: 62  QVCRNLRASKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A+            +  +  +  + GE   LP +E  +L +L  N     +K Q+F
Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+GL D   E + V  HI+++R+K+         +++    GY  
Sbjct: 182 EKIWGL-DAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRF 227


>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
 gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +      +   +   L   ++ E           D+  ++  L        E
Sbjct: 8   LLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL--IDGYE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R IR  S+VP++ +S    +      F+ G DD + KP    E           +   
Sbjct: 66  VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      +   G + +  +  +  V+G+   L  +E  +L ++  +  +   + Q+
Sbjct: 126 EQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F+ ++G  +   + + +   I KLR+K+  +      + +   +GY  
Sbjct: 186 FAHMWG-DEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232


>gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
 gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
          Length = 245

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Angola]
 gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis Angola]
          Length = 230

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 6   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 64  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 124 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 184 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 226


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  N           +  D+  ++  L   G   +
Sbjct: 4   ILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVML--PGLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++    +   +   D G DD + KP    E+LAR+     R   
Sbjct: 62  EVCRRIRMESQVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+  A+   +                  E   L ++E  +LEYLM N+   + + Q+ + 
Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  ++   + NVV+ +I  LR+K+ +K G   + + R +GY I
Sbjct: 182 VWD-YEYFGDTNVVDVYIRYLRQKIDDKYGVHLISTVRGVGYII 224


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G                     D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLML--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R +S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G +++  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579]
 gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L]
 gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1]
 gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI]
 gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579]
 gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L]
 gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1]
 gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220


>gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 226

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +    +        +  R  +  ++  +    G + 
Sbjct: 9   ILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMDGAQT 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
               R         ++ +S     +  L  F  G DD + KPI  + +++RV AI  R  
Sbjct: 69  CRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKRID 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +  +       G    LPR+E  +L+ L ++ GK  ++ +I++ I+G
Sbjct: 129 AGKAPAPAEEGVAMDRERYTVTRDGREISLPRKEFALLDLLYSSPGKLFSREEIYARIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  V +  ++ HI KLR+K+ +    + + + + +GY  +
Sbjct: 189 -SEVVVGDRTIDVHIRKLRQKIGD----EKIVTVKGVGYKYE 225


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L       L
Sbjct: 6   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLML--PKIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +N   E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 232


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +    +  ++ E           D+  ++  L   G    
Sbjct: 8   ILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIML--PGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           EL R +R+ +  P++ +S   +    +   + G DD ++KP   RE++ARV         
Sbjct: 66  ELCRRLRSFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +      I +  D            L  RE  ++  LM + G  V++  +    +
Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G ++   E   V++HI +LR K+         V++ R  GY  
Sbjct: 186 G-WEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRF 227


>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G ++    S +    L +  R D+  ++  L   G   L 
Sbjct: 5   LVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLL--PGMDGLA 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           + + +RA     P++ ++   +++  +   DSG DD + KP    E+    R        
Sbjct: 63  VVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R+       F L  RE  +L Y M +  + + + QI  A++G
Sbjct: 123 ASDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D    ++V++ +I  LR+KL        + + R +GY +
Sbjct: 183 -HDFDGYDSVLDVYIGYLRQKLEAGGEPRLIHTVRGVGYVL 222


>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 248

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A  +          G ++              +   D+  ++           
Sbjct: 11  ILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 128

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +E   S         + + D   ++      G    
Sbjct: 16  ILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVM--MPGMDGF 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            L R +RA     P + +S   S++  ++    G DD V KP    E++AR       + 
Sbjct: 74  GLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSG 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   +   +R     I +  +  +    G +  L   E  +L Y M N G  ++K +I  
Sbjct: 134 FDATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E NVVES++S LR+KL +      + + R +GY +
Sbjct: 194 HVW-NYDFGGEVNVVESYVSYLRRKL-DTGDKRLIHTLRGVGYVM 236


>gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 235

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +                 + D+  ++  L   G   L
Sbjct: 3   ILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWML--PGLDGL 60

Query: 62  ELPRIIRAH----SQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------I 108
           EL   IR      S+ P I  ++        +    +G DD + KP   RE        +
Sbjct: 61  ELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALL 120

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              +    +            P +  +     +   +   L   E  +L   ++  G+  
Sbjct: 121 RRSLRQGGQTRIYQTASFTIDPDQRCARRHYADTPEQTLDLTALEFELLSTFVSYPGRVW 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++Q+   ++G  D   ++ VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 181 NRSQLIDKLWG-SDFFGDDRVVDTHVARLRKKIEPDSSNPTFIKTVIGVGYKFE 233


>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 269

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++      F  +G ++   +  E    + S    D++ ++          L 
Sbjct: 52  LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 109

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A        
Sbjct: 110 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 169

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   ++G 
Sbjct: 170 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 228

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 229 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 268


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L    +  L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLML--PKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +                   D      +G    L  RE  +L YL  + G+ + +  
Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYL 229


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++  +++   + E   ++  S   D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIML--PKKDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R+     P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR  
Sbjct: 61  TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+           +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDKDYSKKLIHTIRGVGYVL 220


>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        DG  +    + E    L      D+  ++  +    G ++ 
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEIC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + ++            L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 ATVGMRLEFDDIILDAETHKVSRSEHPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|256376067|ref|YP_003099727.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920370|gb|ACU35881.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 241

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++       GD+G  +    S E    L      DV  ++  L   G   LE
Sbjct: 21  LLVEDDEHIRQALGLALGDEGFGVTDAVSGEEALRLLDRRVFDVVLLDLSL--PGVDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R++RA   +P+I ++        +   ++G DD V KP+   E+ AR+ A+ RR    
Sbjct: 79  VCRVLRARGDLPIIIVTARADTADVIAGLEAGADDYVTKPLVAGELAARIRALLRRRGGG 138

Query: 123 NNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              A          G       G+   L R E R+L  L +  G+ V + Q+   ++G +
Sbjct: 139 GEEALRFGDLEVRAGEGVVLRAGDEVHLTRTEFRLLVELASAAGRVVTREQLLQRVWG-Y 197

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D   +  +++ HI +LR+K+  N      V + R  GY +D
Sbjct: 198 DYFGDTRLLDVHIRRLRRKVEQNPDDPALVLTVRGAGYRLD 238


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54
            ++++D  +++D       + G  +   +       L          +  D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++   ++ VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   +N  +              E +     E   L  +E R+LE  M+   +  +
Sbjct: 139 ALIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249


>gi|134097367|ref|YP_001103028.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009075|ref|ZP_06567048.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909990|emb|CAM00102.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E     +      ++ R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLQFNGYQVELAADGQQALDWLAAQRPDAMVLDVM--MPRVDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVARRLRSTGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S+   E  P         +    R+         L R E  +LE LMA+  + + ++++
Sbjct: 121 PSDVDREDRPEPLRFSDLELDPGTREVRRGERPISLTRTEFALLELLMAHPKQVLTRSRL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 LEDVWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 226


>gi|108798318|ref|YP_638515.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867415|ref|YP_937367.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433983|ref|YP_001069674.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768737|gb|ABG07459.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693504|gb|ABL90577.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233783|gb|ABN97183.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDPSLAEMLTIVLRGEGFDTAVVGDGTQALSAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +         QGE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAELLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F  +G  +   +  +    L +    D+  ++  + G  G +V
Sbjct: 6   LLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  +  + VP+I ++        +   + G DD V KP   RE++ARV A+ RR++
Sbjct: 66  CRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRRVR 125

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +         +G+   +   E R+L++ M + G+  ++ Q+  A++
Sbjct: 126 PALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGRVFSRGQLLDAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G     +E   V+ HI +LR+ +      DPV + R  GY+++
Sbjct: 186 GSG-SDIELRTVDVHIRRLRQAIAVPGAADPVRTVRSAGYALE 227


>gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 236

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G +     + E    +      D+  ++          +
Sbjct: 7   ILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVM--MPKLNGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           +    IR   ++P+I +S        +   + G DD + KP +            R    
Sbjct: 65  DTCLKIREEREMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYK 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    K   +  E   + +  +  +  +   +  L   E  IL  L  NRGK  + 
Sbjct: 125 FNTKHMEDEKEEESIIEIDELIINLETHEVILSNNLVKLTPTEFDILLLLSKNRGKVFSI 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
             I+ +++   +    +N V  HI K+R+K+ +       + +   +GY I+ 
Sbjct: 185 ENIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +G S+                + D+  ++  L        
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVML--PRLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R  S+VP++ ++        +   + G DD V KP    E+LARV AI RR + 
Sbjct: 64  SVCRILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSER 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                         RV +  R          L ++E  +L  LM NR   +++  +   +
Sbjct: 124 RIGMMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G +D   +   V+ HI  LR+K+  +      + + R +GY  +
Sbjct: 184 WG-YDFLGDSRTVDVHIRWLREKVEPDPSRPVYIHTVRGIGYRFE 227


>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 224

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +         G  +E  N      ++  S+  D+  ++  L   G    
Sbjct: 3   ILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R  R  SQVP++ ++   S++  +   + G DD + KP  + E+LARV  + RR  +
Sbjct: 61  SFIRRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTPM 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       V    R     G+   L  +E  +L+ L+ ++G+ ++++QI S ++ +
Sbjct: 121 RQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKIDDGFAVKLIQTVRGMGYRIE 220


>gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|307326291|ref|ZP_07605487.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887954|gb|EFN18944.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 248

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+   +     +G  +             ++   D   ++  L       L 
Sbjct: 23  LVVDDDPEVRAALVDGLAVEGYEVRVAGDGLAALSAVAAGPPDAIVLD--LAMPVMDGLA 80

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           + R +R      P++ ++    +   +   D+G DD + KP          R +L R A 
Sbjct: 81  VCRRLRGLGDRTPVLVLTARDEISERVAGLDAGADDYLVKPFALDELLARLRALLRRAAP 140

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +  +       + V  + R     G      R E  +LE  + + G+ + +  I 
Sbjct: 141 VEALDENVSGVLSFADLTVDPESRTGMRGGRRMEFTRTEFALLEVFLRHPGQVLPRELIQ 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G  + A + N +  +I  LR+KL  +     V +   +GY
Sbjct: 201 ELVWGT-EFASDSNSLAVYIGYLRRKLEAEGAPRLVHTVHGIGY 243


>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
 gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
          Length = 243

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  I   + A R +     +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 234

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++G  ++   +             D+  ++  L   G   ++
Sbjct: 13  LVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLML--PGIGGMD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAIY 116
           L + I+    +P+I ++        +   + G DD V KP   RE++A      R     
Sbjct: 71  LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G I +        +      L   E +IL   M N G    + ++   
Sbjct: 131 EEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  V +  V+ +I +LR KL +    + +++ R +GY  + 
Sbjct: 191 VWGK-DIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFNE 233


>gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437]
          Length = 249

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +   ++   +                 ++  L       +
Sbjct: 18  ILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLML--PDLDGI 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    VP+I ++        +    +G DD + KP    E+ AR+ A  RR   
Sbjct: 76  DVLRHIRESRNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLY 135

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N + +        G + +  +  +  ++ EV  L  +E +ILE +M+   K  +K+Q+F
Sbjct: 136 LNAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLF 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +++G  D   +EN V  HI +LR+K+  +      + +   +GY +
Sbjct: 196 RSVWG-DDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRL 241


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+D      G  G  +E             +   DV  ++  L   G   LE
Sbjct: 35  LVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLML--PGLGGLE 92

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   + P+I ++        L   + G DD V KP   RE++ RV +I RR   
Sbjct: 93  VCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRTAA 152

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E      RV    R   + G+   L  RE  +L +L+A+ G+   + ++ S ++G
Sbjct: 153 PATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLSRVWG 212

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              E  + + V  H+ +LR+K+  +      + +    GY  D
Sbjct: 213 W--EFGDRSTVTVHVRRLREKVEADPTAPRRIATIWGTGYRYD 253


>gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +     A  G+ G  ++                  +  ++  L        
Sbjct: 16  ILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGL--PDLDGS 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  + H  VP+I ++   +++  +     G DD + KP H  E+LAR+    RR + 
Sbjct: 74  EIARRAKQHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRRGEG 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R          + R     G    L  +E  +LE L +  G+  ++ +I   I+G  
Sbjct: 134 GEVRRVGDLEIE-VETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGKP 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               E NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 193 -LETESNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 230


>gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +     F   G + E  +  E       +   D+  ++  L   G   L
Sbjct: 4   ILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNL--PGADGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R IRA   VP++ +S        +  F  G DD V KP    E+             
Sbjct: 62  EVCRSIRAQLDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLSRYER 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        +     + +    R   V G    L  RE  +L ++ A+  +  +KT++F 
Sbjct: 122 FANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSKTELFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G FD A +   V  HI ++R+K+         +++    GY  
Sbjct: 182 RLWG-FDSAGDIATVAVHIRRVREKIEAVPSNPQFIETVWGAGYRF 226


>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGKITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       + + D+  ++  L    +  ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVML--PKKDGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           + + +R +   VP++ ++        +   + G DD + KP   RE+      + R +  
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + ++  ++    G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D         G  +      +      S    D   ++  L        
Sbjct: 3   ILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGL--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  S+VP++ ++        +   + G DD V KP   RE+    R      + 
Sbjct: 61  EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + +       ++ G+   L  RE+ IL  L+ +  +  ++ ++ S I+G
Sbjct: 121 AQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                V +  ++SH+  LR KL    G D +++   +G  +
Sbjct: 181 AG-SQVSDRTLDSHLRNLRAKLEQAGGNDLIETVHAVGIRL 220


>gi|296130171|ref|YP_003637421.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296021986|gb|ADG75222.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 227

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +    +  + + D+  ++  L   G+   E
Sbjct: 6   LVVDDDTALAEMIGIVLRSEGFDPVFCEDGDEALGVFRATQPDLVLLDLML--PGKDGNE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD ++KP   +E++ARV A  RR    
Sbjct: 64  VCRQIRGESGVPIVMLTAKSDTIDVVLGLESGADDYISKPFKPKELVARVRARLRRSDEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G   E  G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEHLTIGDLTIDVPGHRVERAGRTISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIETDPARPEIVVTVRGVGYK 221


>gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895]
 gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD V KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +             S   D+  ++          L
Sbjct: 11  ILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDV--QMPRMDGL 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128

Query: 121 VSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +          +      +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 129 YARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 189 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       +DG  +  F +             D++ ++  L       LE
Sbjct: 4   LVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIML--PDISGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIYR 117
           + + IR +   P+I ++   +    +     G DD V KP    E++             
Sbjct: 62  ICQTIRENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYKTM 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N    G + +  D     +  +   L   E  IL  L  ++GK V   QIF  +
Sbjct: 122 TPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQEL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G        + +  HI  LR+K+ +       + +   +GY I
Sbjct: 182 WGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGYKI 225


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYAQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I V+ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N          +   D+  ++  L   G    
Sbjct: 4   ILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P++ +S        +     G DD V KP    E++ARV A   R + 
Sbjct: 62  EICKQIREKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+         +++   +GY  
Sbjct: 182 KEIWNM-DSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227


>gi|270293142|ref|ZP_06199353.1| DNA-binding response regulator VncR [Streptococcus sp. M143]
 gi|270279121|gb|EFA24967.1| DNA-binding response regulator VncR [Streptococcus sp. M143]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++ + 
Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++      F  +G ++   +  E    + S    D++ ++          L 
Sbjct: 6   LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A        
Sbjct: 64  VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   ++G 
Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 183 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 222


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +  +    +              D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLML--PGLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120
           E+ R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E +      + R   
Sbjct: 63  EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G   +    V  L   E  +L  L  +  K   + ++ S ++G 
Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYR 221


>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E            +  + D   ++  L   G   L
Sbjct: 4   ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVML--PGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R I+A   VP++ ++        L     G DD + KP   RE              
Sbjct: 62  EVCRRIQADRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDR 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           AA         ++   G + V    R      E   L   E  +L  L +     + + +
Sbjct: 122 AAQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRER 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D +     V+SHI  LR+KL    G D + +   +GY+ +
Sbjct: 182 LLAEVWDWVDASG-TRTVDSHIKALRRKL----GADLIRTVHGVGYAFE 225


>gi|262203510|ref|YP_003274718.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086857|gb|ACY22825.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDAALAEMLTIVLRGEGFEPFVVGDGTQALTAVREIRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRVLRADSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARVRARLRRTDE 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ +          G    L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAELLSIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221


>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894]
 gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+      ++P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEQSGHDRMVQTVRGTGYRF 225


>gi|228477753|ref|ZP_04062382.1| DNA-binding response regulator VncR [Streptococcus salivarius
           SK126]
 gi|228250642|gb|EEK09853.1| DNA-binding response regulator VncR [Streptococcus salivarius
           SK126]
          Length = 217

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +      +    L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGYEVFEAGDGQEALDLFHREAPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++ +   +  L  F    D    +      +L        +   
Sbjct: 61  EVLKEIRKTSSVPVLMLTAFHDEEYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans
           568]
 gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 239

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     +         +    +  ++  L   G   L
Sbjct: 11  IMIVEDEPKLGQLLVDYLQAAGYATHWLTNGSEVVPAVHAHSPALILLDLML--PGSDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  + +P++ ++        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 69  TVCRELRRFTDIPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 128

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +  +      +         QG++  L   E R+L+ L +  G   ++ Q+ + +Y  
Sbjct: 129 PLDNTQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 188

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL         + S   +GY  +
Sbjct: 189 Y-RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWE 229


>gi|154686246|ref|YP_001421407.1| YvrH [Bacillus amyloliquefaciens FZB42]
 gi|42491108|emb|CAE11245.1| YvrH protein [Bacillus amyloliquefaciens FZB42]
 gi|154352097|gb|ABS74176.1| YvrH [Bacillus amyloliquefaciens FZB42]
          Length = 267

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  ++    +  
Sbjct: 41  LIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILD--IMLPDGEGY 98

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A      Y
Sbjct: 99  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +    + GP  +     +         L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 159 LQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQA 218

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ N     D + + + LGY  
Sbjct: 219 VWGE-DFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 262


>gi|331091977|ref|ZP_08340809.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402876|gb|EGG82443.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++     L   +   +   ++ E    L       V  +   ++   +  L
Sbjct: 15  IMVVDDDADIRQALRVLLETENYEVSEADNGEMALELLDET---VDLMILDIMMPEKDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +R     P++ ++   +       F SG DD + KP    E+L RV+A+ RR  V
Sbjct: 72  STCREVREKYTFPILFLTAKTTENDKYVGFLSGGDDYLTKPFSKMEVLTRVSAMLRRYHV 131

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +++  +        +   L   E  IL ++  N  +     ++
Sbjct: 132 YQGKGSESKEKYICIKDLKIDRNVSRVFQGDKEIVLTNTEYDILVFMAKNPNRVFTLEEL 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           +  I+G          V  HI  LR+KL +       + +    GY+I  + N
Sbjct: 192 YEKIWGEPYHFSVNATVMVHIRNLRRKLNDTSQASRYIKNVWGKGYAIVDETN 244


>gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 242

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +     +              +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLML--PGCDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR   
Sbjct: 71  TICRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N+  +          +   G      G+   L   E R+L+ L    GK  ++  +   
Sbjct: 131 QNDGMKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
           SIP3-4]
 gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
           MP688]
 gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. MP688]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +     S+E  + L   A  D+  ++  L   G   +
Sbjct: 5   ILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWML--PGMSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E  R +++      +P+I ++        +   + G DD V KP   RE+ AR+ A    
Sbjct: 63  EFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +++++  E G +R+          G    L   E R+L YLM+N  +  +++Q+   
Sbjct: 123 RAPQMTDDPIEVGGLRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LR  L +    D + + R +GY  
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRLALADSGHEDLIQTVRGVGYRF 225


>gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D  +     +    +    +      L  +   D+  ++  L       
Sbjct: 17  ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVML--PDIDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++  P++ ++   S    L     G DD + KP +  E+ AR+    RR +
Sbjct: 75  FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQQ 134

Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +     +     +  +              G+      +E  +L +L  +  +     Q+
Sbjct: 135 MLIRHHKEEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++GL     ++  V  HISKLRKK+  +      + + R +GY  
Sbjct: 195 YEQVWGLT-SMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKF 241


>gi|225860601|ref|YP_002742110.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230065|ref|ZP_06963746.1| VncR, response regulator [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255464|ref|ZP_06979050.1| VncR, response regulator [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502394|ref|YP_003724334.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|225728327|gb|ACO24178.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237989|gb|ADI69120.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|327390338|gb|EGE88679.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G         +    L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCIFTVRNVGYKLE 216


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +             D+  ++  L       L
Sbjct: 6   ILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVML--PELSGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  +   P++ I+   S+   +   D G +D + KP    E+LAR+ A  R   
Sbjct: 64  EVLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ET             RD +  G++  L  RE  +L +L+ ++ + + + Q+ +A
Sbjct: 124 NEQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 184 VWG-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
          Length = 240

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +           R D   ++      G    
Sbjct: 16  ILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVM--MPGMDGF 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R ++A     P + ++   SLQ  +     G DD V KP    E++AR+  I RR  
Sbjct: 74  GVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R     I +  +  +    G+   L   E  +L Y + N G  ++K +I  
Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 236


>gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family),
           BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278]
          Length = 231

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+++             +  R D+  ++          L
Sbjct: 5   ILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVG--MPEFDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP++ +S        +   + G DD V KP   RE++ARV  I RR+  
Sbjct: 63  EVCRRIRRTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRRVAT 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   E   +                      L   E  I+  L+       ++ QI SA
Sbjct: 123 GHRSDEAEELVHGRLRLDPQQHLARFGDTPLTLTALEFSIVRTLLTRPAVVFSREQIMSA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Y   +  V +  ++SHI  +R KL      D +++   +G+ +
Sbjct: 183 AY-QLNIQVSDRTIDSHIRNIRAKLATAGCDDAIETVHGVGFRL 225


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G S       +           D+  ++      GE   
Sbjct: 9   ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIM--MPGEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117
            +   +RA  +VP+I +S        +     G DD + KP    E+ AR+         
Sbjct: 67  SVCERVRAQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSGS 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N    G I +    R  +V+G    L  +E  +L + + ++   +++ Q+   I
Sbjct: 127 ISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQI 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G+ D       V++HI  LR KL      D + +   +GY  + 
Sbjct: 187 WGM-DYLGSLRTVDTHIKTLRMKL---GAGDYIKTVWGIGYKFEV 227


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G                +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +RA S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKQLRATSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGND 121

Query: 122 SNNRAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             + A+                  ++  +     V GE   +P +E  +LEYL+ N G+ 
Sbjct: 122 QASNADAAEGAEAEDEQILSGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + + Q+   I+G  D   +   ++ HI +LR K+         + + R LGY  +
Sbjct: 182 LTRGQLIDRIWGA-DYVGDTKTLDVHIKRLRTKIEEHPSRPKHLVTVRGLGYKFE 235


>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 92/221 (41%), Gaps = 12/221 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +    +G  +      E    L      D+  ++       +   
Sbjct: 3   ILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVM--MPKKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I++    P++ ++     +  +   + G DD + KP   + +  R+     +  +
Sbjct: 61  EVCRAIKSEKTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRL-----KNLL 115

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  R   + ++  +  ++  LP +E  +L YL  N  K  ++ QI + ++ L 
Sbjct: 116 GDEIYTIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWDLL 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            E+ +   V++HI  LRKK+    G + + + +  GY  + 
Sbjct: 176 CES-DPRTVDTHIKNLRKKI----GHEYITTVKGFGYKFEV 211


>gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R +++ +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|288906147|ref|YP_003431369.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus UCN34]
 gi|306832192|ref|ZP_07465346.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|288732873|emb|CBI14452.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus UCN34]
 gi|304425631|gb|EFM28749.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G   +GF + E       S + D+  ++  L G  G  
Sbjct: 1   MIYCVEDDDDIRELMLYTLKTTGFVAQGFPNAELFWQAIESQKPDLILLDIMLPGSDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +LE  +   + + +P+I  +   +    +   D G DD + KP    E+++R+ A     
Sbjct: 61  ILEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +        + G + +       +  G+   L  +E  +L  LM    +   + ++ + +
Sbjct: 121 QKSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +    E   V+ HI  LR KL +      + + R +GY ++ 
Sbjct: 181 WGEY-FVGETRTVDVHIGTLRTKLGDASH--LIKTIRGVGYRLEE 222


>gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 96/237 (40%), Gaps = 21/237 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +          +G  ++          +  +   D   ++  L    G  + 
Sbjct: 5   LIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGMDIC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  R      + P++ ++        +   + G DD + KP   RE+LAR+ AI RR+  
Sbjct: 65  KKLRQ--EKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122

Query: 121 ---------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                            +   + G I++     +  V+G+   +  +E  +L Y++    
Sbjct: 123 KSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRIN 182

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++ Q+  AI+  FD A E  +V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 183 RILSREQLLDAIW-NFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFE 238


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +  +    +              D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLML--PGLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120
           E+ R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E +      + R   
Sbjct: 63  EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G   +    V  L   E  +L  L  +  K   + ++ S ++G 
Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYR 221


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +D     FG++G  +E  +      +  +    D   ++  L   G   L
Sbjct: 5   LLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRML--PGLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA   + P++ ++   ++   +    +G DD + KP   +E+ AR+ A+ RR +
Sbjct: 63  AVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQ 122

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S      +   + +    R     G    L  RE +ILE+ +  + + V++T +   ++
Sbjct: 123 ESEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +      NVV+ HISKLRK+L    G   +++ R  GY 
Sbjct: 183 D-YHFDPNTNVVDVHISKLRKQLDEAGGPPLIETVRGAGYM 222


>gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
 gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++    +   +G         +           D+  ++  + G  G +V
Sbjct: 5   ILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++  +       +P+I ++     +  +   ++G DD V KP   +E+    +       
Sbjct: 65  IKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRLS 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  E   + +         Q +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEQDGHDRMIQTVRGTGYRF 225


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         D   +      E    L  S + +++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDK-NIALIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           E+ R IR +S+VP+I ++     +  L  F+ GVD+ +                      
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G I V        V+G    L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 TNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL  K   + + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG--EYIKTVWGMGYKFEV 224


>gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      S    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G                S    D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V
Sbjct: 62  DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   AE           G +R+  D     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|257057064|ref|YP_003134896.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586936|gb|ACU98069.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +            + D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLTIVLRGEGFDTAVVSDGSRALPALRELKPDLVLLDLML--PGMNGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR +  
Sbjct: 64  VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARLRRTESE 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G +    G+  PL   E  +L  L     +   +  +   ++G +
Sbjct: 124 PAETLTIGDLTIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 221


>gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +          G    +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPGSHRVMTGGSPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG S+    +          ++ D++ ++  L        
Sbjct: 5   ILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR     P+I ++        +     G DD + KP +  E++ARV    RR + 
Sbjct: 63  RLCQKIREKFYFPIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYQS 122

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N+   +                       + G+   L   E  IL YL  ++GK VA  
Sbjct: 123 YNSPNLSQSEEKDEYDIRGLLINRVSHKCYLYGKEIALTPLEFSILWYLCEHQGKVVASE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++         N V +HI +LR+KL         + +   +GY I+
Sbjct: 183 ELFEAVWKEKYLRNSNNTVMAHIGRLREKLNEPSKNPKFIKTVWGVGYEIE 233


>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 230

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +E   +      L    + D+  ++          +
Sbjct: 6   ILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVM--MPVVNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR     P+I +S        +     G DD + KP +  E++ARV A  RR   
Sbjct: 64  DACIKIREQYNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRRFTK 123

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N    +  +          +       G+   L   E  IL+ L  N+G       I+ 
Sbjct: 124 LNTAHTSSKVLEQDGLTLNLETGKVHKNGDEINLTPTELSILKLLWMNKGMVFKIETIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G        N V  HI KLR+K+       D + +   +GY  
Sbjct: 184 RVWGQEYFD-NNNTVMVHIRKLREKIEENPRTPDYIYTVWGVGYKF 228


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +          +   +E     +       S   D   ++  L    G  V
Sbjct: 4   ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLDV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
               +I     Q P++ ++   +    +   + G DD V KP   REI            
Sbjct: 64  --TCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +     L  + N+   G I +  +       G    L  +E  +L Y     GK +++  
Sbjct: 122 SQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + + ++G FD   E  +V+  +S LR K+  +    D + + R  GY ++
Sbjct: 182 LLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230


>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 242

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  + + D+  ++  L   G   +
Sbjct: 23  ILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLML--PGIDGI 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV A  R    
Sbjct: 81  EVCRLIRAESDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPGDQ 140

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   I +   G           L   E  +L  L     +   +  +   ++G 
Sbjct: 141 KTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 199

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 200 YRHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGYK 239


>gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
 gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
          Length = 242

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R +R    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A ++         +G  +      E       S    +  ++          L
Sbjct: 26  ILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIM--MPKRDGL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++   +    L+ F  G D+ ++KP   + ++ RV +I +R  +
Sbjct: 84  EVCAEIRKLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAGL 143

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +        ++        V  +   L  RE  +L YL+AN+   + + QI  A++G+
Sbjct: 144 LQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWGM 203

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +   V++HI  LR K+      + + + R +GY  +
Sbjct: 204 -DYEGDIRTVDTHIKCLRIKI--PGAQEYIKTIRKIGYKFE 241


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G   E                  +  ++  L       +
Sbjct: 6   ILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVML--PRLSGM 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR   +  P+I ++   ++   +   D G +D V KP    E+LAR+ A  R   
Sbjct: 64  EVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQL 123

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++               V    R+ +       L  RE  +L YL+ +  + + + QI 
Sbjct: 124 STSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD   + NVV+ +I  +R+KL        + + R +GY +
Sbjct: 184 EHVWG-FDYFGDTNVVDVYIRYMRQKLDKPFDAPLIHTVRGVGYVM 228


>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
 gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        DG  +    + E    L      D+  ++  +    G ++ 
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEIC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + ++        +   L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 ATVGMRLEFDDIILDAETHKVSRSEQPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|242243834|ref|ZP_04798278.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           W23144]
 gi|242232732|gb|EES35044.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           W23144]
 gi|319401656|gb|EFV89865.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++      G 
Sbjct: 1   MINCLIVDDDEKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +++ +        + +          +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223


>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 252

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54
            ++++D  +++D  +    D+G  +   N       L             +   +   L+
Sbjct: 21  ILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDLM 80

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++    + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  LPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 140

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR  ++N+ + +            E +     +   L  +E R+LE  M+   +  +
Sbjct: 141 ALIRRQNLTNSSSSSVKQFRDITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRVWS 200

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 201 RDQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 251


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D        +G  ++   +      L  +    +  ++  L   G   L
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVML--PGMTGL 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L + +R    QVP++ ++   S++  +     G DD + KP    E    +  +    R
Sbjct: 64  DLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGR 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +   + +  +       G    L  +E   LE LM+  G+  ++ +I S +
Sbjct: 124 EQRPRATTLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ +     NVV+ ++ +LR K+        + + R LGY +D
Sbjct: 184 WGMHE-DPLTNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226


>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
           [Frankia alni ACN14a]
          Length = 358

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           L    R D   ++  L       LE
Sbjct: 22  LVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIML--PDMDGLE 79

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S   P++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 80  VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 139

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G + +  + R+    G    L   E  +L + M N  + ++K QI   
Sbjct: 140 TTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILDR 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 200 VW-NYDFGGQANVVELYVSYLRKKI-DAGRPPMIHTMRGAGYVL 241


>gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 240

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   ++          G  +   +  E    L      D+  ++  L G  G +V
Sbjct: 13  ILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDGGEV 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R       +P++ ++            D G DD + KP   + ++ARV A  RR +
Sbjct: 73  CKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRRGR 132

Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                +        V GE   L   E  ILE L    G   ++ 
Sbjct: 133 EVAGEEGGAGGVLRLEAAGLVIDPGRYQVLVAGEPVFLTLSEFGILELLARRPGWVFSRQ 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A+ G +D A+    V+  +  LRKKL    G   +++ R +GY +
Sbjct: 193 QIIDAVRG-YDYAITPRAVDVQVFGLRKKLGAAGG--CIETVRGVGYRL 238


>gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein sphR
 gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942]
 gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 257

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---------AREDVSAIEAF 52
            ++++D A+++D    +   +G +++             S            D+  ++  
Sbjct: 26  ILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLM 85

Query: 53  LI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L    G     L R       VP++ +S   +    +   + G DD + KP   RE++AR
Sbjct: 86  LPAVNGLDFCRLLRR--QGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143

Query: 112 VAAIYRRLKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A+ RR +                 F +     +      L  +E R+LE  M +  + 
Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G+ D   +   ++ HI  LR+K+  N      + + R  GY +
Sbjct: 204 WSRDQLLEKIWGI-DFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256


>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 234

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +    + +    +       +  ++      G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIM--MPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ R IR  + +P+I +S   +    +    +G DD V KP +                +
Sbjct: 64  EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +      L+ + N      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSSALQGAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +               +  D+  ++  L   G    
Sbjct: 5   ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWML--PGISGP 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P+I ++    +   +   D+G DD V KP    E+LARV A  RR +
Sbjct: 63  EICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +           +       +G+    L  +E  +LEYL+A+  + + + QI   ++G
Sbjct: 123 TEDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        V + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEANNESRLVQTVRGVGYVL 222


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++        +G         E    +    + D+  ++  L    E   E
Sbjct: 7   LIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIML--PDEDGWE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IR    +P+I +S        +   + G DD + KP   RE++AR+ A+ RR   +
Sbjct: 65  FCQKIRPEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNKA 124

Query: 123 NNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              A+          R+      QGE   L  +E  +L +L  N  K   + ++  A++G
Sbjct: 125 AENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI  LRKKL +K   + V++   +GY  D
Sbjct: 185 -YDYYGDVRTVDTHIKSLRKKLGDK-AAEAVETVWGVGYKFD 224


>gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++    L   +G       +        +    D+  ++  L G  G + 
Sbjct: 5   ILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  R       +P+I ++     +  +   + G DD + KP   +E++ARV A+ RR+ 
Sbjct: 65  IQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIRRIV 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +         +           +V  +   E ++L + MA   +   + Q+ + ++
Sbjct: 125 PTTTKEIIEIQGLILDPSSHRVIANEQVLAMGPTEFKLLHFFMARPERVYNREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKVLEKNGHDKMIQTVRGAGYRF 225


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 8   LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLML--PVMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    ++  ++  D+G DD + KP    E+LAR+ A  RR+ 
Sbjct: 66  IEVARRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVT 125

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +  +GR+    G    L  +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 126 PAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NVV+ +I  LRKKL        + + R +GY +
Sbjct: 185 -PGYQGGSNVVDVYIGYLRKKLEGIGERRLIHTVRGVGYVL 224


>gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +            ++     +    ++     D+  ++  L        
Sbjct: 4   ILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLML--PSMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
           E+ R IR  S VP++ +S        +  F  G DD + KP                   
Sbjct: 62  EVCRRIREASNVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLSRYER 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +      IR+    R   V         +E  +L YL+ +  +   K  
Sbjct: 122 LVGQGHNGQHRDELRLNGIRIEKQSRRVFVNEREVSFTAKEYDLLFYLVTHPNRVFRKED 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +F  I+G+     +   V  HISKLR+K+  +      V++   +GY  +
Sbjct: 182 LFEQIWGMDAIGSDHATVTVHISKLREKIERDPSKPQYVETIWGVGYRFN 231


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 13  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVML--PDLDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           E+ R++R    + P++ ++   +    +     G DD V KP    E+ AR+        
Sbjct: 71  EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTS 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 131 TGEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ + +    + + R +GY +
Sbjct: 191 W-NYDFRGDDNIVESYISYLRRKV-DNVEPRLIHTLRGVGYVL 231


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 256

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D   +    +G  +                R D+  ++          L 
Sbjct: 20  LVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIM--MPRMDGLT 77

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------------HHREI 108
             R +R+     P++ ++   ++   +   D G DD + KP                  +
Sbjct: 78  AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALLRRNAL 137

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A  AA     +          +R+ +  R+    G    L R E  +LE  +++  + +
Sbjct: 138 AAEAAARTAADEDGGEVLSFADLRMNTATREVTRGGHTIELTRTEFMLLEMFLSHPRQVL 197

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + QI  A++G FD     N ++ ++  LR+K         + + R +GY
Sbjct: 198 TREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEQHGMPRIIQTVRGVGY 246


>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 217

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      + +    R+  V+G+   L ++E  +L YL   +   +++  I ++++G +
Sbjct: 121 PSSNDI---LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL +    D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215


>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                  A+ D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLML--PGLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  +IRA S +P+I ++        +   +SG DD + KP + +E++AR+    R    
Sbjct: 63  QVCDLIRAESGIPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++          V  +G +     +   L   E  +L  L +   +   +  +   ++G 
Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 182 YQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++    +             D+  ++  L        
Sbjct: 10  ILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVML--PDMNGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
            + + +R A    P++ ++     +  +     G DD V KP          +       
Sbjct: 68  GVTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +  D  +  V      L   E ++L YLM N  + ++K QI   ++
Sbjct: 128 QADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+K+        + +KR  GY +
Sbjct: 188 -EYDFNGDAGIVESYISYLRRKVDAHSSEALIQTKRGFGYML 228


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E      +    D+  ++  L       LE
Sbjct: 15  LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 73  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 132

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E             +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 133 AKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+         
Sbjct: 62  SVCREIRTFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  + G + +    R    +G+   L  +E  IL  L +N GK   K ++   +
Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
 gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N          +   D+  ++  L   G    
Sbjct: 4   ILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P++ +S        +     G DD V KP    E++ARV A   R + 
Sbjct: 62  EICKRIREKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+         +++   +GY  
Sbjct: 182 KEIWNM-DSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   D    L   +G  +             +    D+  ++  L   G   +
Sbjct: 4   ILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVML--PGMSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S VP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 62  EVCRELRRESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G + + +D     V+GE   +P +E  +LE LM N G+ + + Q+   +
Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R K+         + + R LGY  +
Sbjct: 182 WGA-DYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225


>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 231

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G  ++         +       D+  ++  L   G    +
Sbjct: 4   LVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVML--PGMDGFQ 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S+VP+I +S    ++  +   + G DD + KP    E++AR+ A+ RR   +
Sbjct: 62  LLRELRKKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRNDPA 121

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N       I            R      +   L  +E  +L+  M   G+ +++  +   
Sbjct: 122 NLAEAHTNIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTLAEQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NVVE+ + +LR K+        + + R +GY I+
Sbjct: 182 VWDI-NFNNNTNVVEAAVRRLRAKVDGPFESKLIHTVRGMGYVIE 225


>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +++         G ++     +   + L      D+  ++  L    G   
Sbjct: 5   ILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTSGLDW 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               +       +P+I ++     +  +   D G DD V KP   RE+    +       
Sbjct: 65  ARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRRTA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    E   +R+          GE   +   E  +L + M ++ +   + Q+   ++
Sbjct: 125 PITSEEPVEVEGLRLDPVSHRVSGHGEALSMGPTEYNLLHFFMTHQDRVFTRGQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEERTVDVHIRRLRKALALTGHDHLVQTVRGSGYRF 225


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L   +G  +                  D+  ++  L   G    
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKRLRAVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGE 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   ++       I +  +     V GE   +P +E  +LEYLM N G+ + + Q+   +
Sbjct: 122 TIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI +LR K+         V + R LGY  +
Sbjct: 182 WGA-DYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYE 225


>gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 243

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++   ++      L    R D+  ++  L       L
Sbjct: 6   ILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQ--LNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  + VP++ +S        +     G DD + KP    +++ARV A  RR  +
Sbjct: 64  DVCQQIREITAVPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRRQSL 123

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + + +                  R   V  +   L  +E  +L  L     +      +
Sbjct: 124 QSEQRDKPVRDQLVFDGLIIDLTARTVRVGDQYVSLSVKEFELLALLATQPNRAFQLANL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + A++G+ +   +   +  H+S LRKK+  +      + + R +GY  + 
Sbjct: 184 YEAVWGV-NSIGDTRTLMVHMSNLRKKIEPDPTNPRWIVTLRGVGYKFNV 232


>gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++    A    +G+ +      +  E    ++  D+  ++  L   G+  L
Sbjct: 7   ILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLML--PGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  TLCRNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARS 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172
                +    R                +            E R+L   +++  + + + Q
Sbjct: 125 LPRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G  +    +  ++  +S+LR++L +       + + R  GY +
Sbjct: 185 LVDLTQGR-EADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVL 232


>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++     F   G ++      +    L  +A  D+  ++  L        
Sbjct: 5   ILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLML--PKMDGW 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR       VP+I ++     +  +   ++G DD V KP    E++ARV A  RR
Sbjct: 63  EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSA 176
                       +   +     +V  +  P  L   E R+LE LM+ RG+ V+K +I   
Sbjct: 123 SDSPQGGEVQISMGNLTLEPQGDVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEEILGK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+G      +   V+ ++ +LR+KL        + + R  GY 
Sbjct: 183 IWGHVGS--DSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYR 223


>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
 gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
          Length = 230

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   +      + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V+D       + G  +   ++           R D+  ++  ++  G   L
Sbjct: 4   ILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLD--MMMPGMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R  RA    P++ ++   +    +   + G DD V KP    E+    R        
Sbjct: 62  EFLRRFRAAEHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRGNE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + + +  R   VQG    L R E  ++   +   G+  ++ ++      
Sbjct: 122 APPSAFVRAGELEMDAASRTFLVQGSRVDLTRSEFELMAAFLRAPGRVFSRLELLEQ--L 179

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +    E  ++ H+  LR K+         +++   +GY ++
Sbjct: 180 QEEALGAERTIDVHVRNLRAKIEPEPGKPRFIETVFGMGYRLN 222


>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    L      D++ ++       +   
Sbjct: 3   ILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVM--MPNKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           EL R IR +  +P+I ++    +      + +G DD + KP   +E++ R+ A + R   
Sbjct: 61  ELCREIRRYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRRFGL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  +     +     +   + +   LP +E  +L  L +   +   + Q+ S ++G 
Sbjct: 121 VSSDTIQLNNTVIDRKSYEIRCKDKTLILPLKEFELLSQLASCPDRIFTREQLISLVWGQ 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +   V+ HI +LR++      F  + + R LGY ++
Sbjct: 181 -DFTGDARTVDVHIKRLRERFSQTDDF-IITTVRGLGYKLE 219


>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
 gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D A  ++        +G  +    + +           DV  ++  +    G +V 
Sbjct: 8   LIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIEVC 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +I      +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 68  RRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRVRP 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + ++            L   E R+L   M   G+  ++  +   ++G
Sbjct: 128 ATVGQVLTYEDIVLDAETYRVTRDDNPLKLGPTEFRLLSTFMEKPGRVWSRDMLLDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 188 R-DIYVDTRTVDVHVGRLRKVLTQHGGSDPVRTVRGAGYAL 227


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L    +  L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLML--PKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                      D      +G    L  RE  +L YL  + G+ + +  
Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYL 229


>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N  E    +      D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  ++ +L  N      K ++F
Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 NKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++             +      E    +    + D++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEK-DIALLILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           E+ R IR +S+VP+I ++     +  L  F+ GVD+ +                      
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G I +        V  +   L  +E  +L Y + N G  +++ +I ++++ 
Sbjct: 125 SNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR K+ +K   + + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEV 224


>gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++           
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKNIDLVVLDIM--MPIMDGW 70

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 231


>gi|57865389|ref|YP_189511.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251811932|ref|ZP_04826405.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875223|ref|ZP_06284096.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367070|ref|ZP_06613742.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673433|sp|Q5HLN2|HSSR_STAEQ RecName: Full=Heme response regulator hssR
 gi|57636047|gb|AAW52835.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251804531|gb|EES57188.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295988|gb|EFA88509.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318800|gb|EFE59174.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733807|gb|EGG70131.1| heme response regulator HssR [Staphylococcus epidermidis VCU028]
 gi|329735102|gb|EGG71398.1| heme response regulator HssR [Staphylococcus epidermidis VCU045]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++      G 
Sbjct: 1   MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +++ +        + +          +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++             +   D+  ++  L       +
Sbjct: 6   ILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVML--PSLNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R +S+VP+I ++    +   +   D G DD + KP    E    +       R 
Sbjct: 64  EVLRRLRQNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E G +++           EV  L + E  +L+YLM N+   +++  I   ++
Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NVV+ +I  LR K+ ++     + + R +GY +
Sbjct: 184 G-YDYTGDTNVVDVYIRYLRSKIDDRFNHKFIYTVRGVGYQL 224


>gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
 gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
          Length = 242

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R +R    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + G+   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|255530281|ref|YP_003090653.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343265|gb|ACU02591.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +     +G  +      E  E +  + + D+  ++  L   G++  
Sbjct: 11  ILIVEDDENLRFLVVHRLKAEGYEVSEVGDGEAAERMILAEKPDIVLLDWML--PGKQGA 68

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   +R       +I ++        +D ++ GV D V KP +   ++A + +  +   
Sbjct: 69  EVCEEVRKQGFDNLIIMMTAKAQDVDKIDAYNFGVSDYVTKPFNMDVLVAMLDSKVKFIL 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +    +       G+   L   E RIL Y + N  K + + ++   ++
Sbjct: 129 NNDRSEVHRFGNMEHHPNIHTLFRDGKKIELTILENRILLYFLRNPNKVINRDELMLVVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G ++  V    ++ HI +LRKK+  N      + + R +GY  +
Sbjct: 189 G-YNSDVNTRTLDMHIVRLRKKIELNPDNPQLLQTVRGVGYRFN 231


>gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046]
 gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
          Length = 226

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G  +   +  E       +   D   ++  L        
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR H Q P++ ++        +   + G DD + KP + RE++AR+       ++
Sbjct: 63  EVLKAIREHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       E   I V    R      E   L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPTQRPIIEHQGILVDCSKRLATHNNEPMDLTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           G       +  ++ HIS LR KL +   G   V + R  GY  +
Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNQAGEPLVKTVRGFGYMFN 225


>gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 STDPHTPKGLQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E                 D+  ++          L
Sbjct: 5   ILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVM--MPNLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ + IR +S +P++  S   +    +    +G DD V KP +  E++A      R +  
Sbjct: 63  EVTKRIRKNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSNY 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  K  +       I           +G    L   E  +L  L ++  +  +  +IF 
Sbjct: 123 TQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEIFD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             + + +  V    V  HIS LR+KL     G   + +   +GY I+
Sbjct: 183 RCWKMENF-VSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGYKIE 228


>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
 gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
          Length = 245

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56
            ++++D   +++        +G  +E   + +  E        +  + D+  ++  L   
Sbjct: 15  LLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLML--P 72

Query: 57  GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREI 108
               +EL R +R ++   P++ +S   S    +   + G DD + KP          R I
Sbjct: 73  NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           L R    + + +  +       I ++          +   L  +E +I+E  + N  +  
Sbjct: 133 LRRSETNHEKTQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ Q+   I+G+ D   +   V+ HI  +R+K+ +     D + + R  GY  
Sbjct: 193 SRDQLLEQIWGI-DYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244


>gi|111022588|ref|YP_705560.1| response regulator (protein-glutamate methylesterase) [Rhodococcus
           jostii RHA1]
 gi|110822118|gb|ABG97402.1| response regulator (protein-glutamate methylesterase) [Rhodococcus
           jostii RHA1]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E            ++AR D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDAIVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     + +    R+         L R E  +LE LMAN  + + + +I   
Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGETRLLHTVRGVGYVL 223


>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
           turnerae T7901]
 gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Teredinibacter turnerae T7901]
          Length = 235

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D           ++      +    +    R D+  ++      G   +
Sbjct: 6   ILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWM--MPGVSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E  R +++     ++P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  EFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S +      + +        + G    L   E R+LE+ + ++ +  ++ Q+   
Sbjct: 124 SDSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQLLDY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L+ +     V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALKLENHDRLVQTVRGAGYRF 226


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + E    L       +  ++          +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            +   +R  +++P+I +S        +    +G DD V KP +          ++   + 
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R    + N  E G +++        V  E   L  RE  ILE L  N+G  ++  QI
Sbjct: 124 MNGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  ++   +    +N V  HI K+R+K+         V +   +GY I+ +
Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G S+   ++      +    +  +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R +       +  ++      + +  FD+G DD + KPI  + ++++V      YR
Sbjct: 68  CEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRRYR 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+N  + G I +  +       G    LPR+E  +L  L +  GK   +  I   +
Sbjct: 128 EEDTSSNIVKLGDITINREEYKIVQNGNEMALPRKEFELLSLLASKPGKVFKREDILDNV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V    ++ HI KLR+K+ +      + + + +GY  
Sbjct: 188 WGN-DIVVGGRTIDVHIRKLREKIGDDK----IKTIKGVGYKF 225


>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 VVAATTPRTGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    +       +  ++          +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIM--MPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A           +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
 gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL + A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 236

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       ++G  +E F   E    +    + D+  ++  L   G   
Sbjct: 5   LIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIML--PGVDG 62

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVA 113
            E+ + I+ +     +P+I ++        +   + G DD ++KP         +     
Sbjct: 63  FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S  R   G I +  + R+     ++  +  +E  +L+ L+ NRGK +++  +
Sbjct: 123 RQADSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 183 LQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRCIGYRF 229


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A    R 
Sbjct: 61  RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + V +  R    +G    L  +E  +LE+L+   G+ VAK +I   ++
Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL    G + + + R  GY ++
Sbjct: 181 D-FAYDGDPNIVEVYISALRRKL----GAERIRTVRGAGYRLE 218


>gi|302554102|ref|ZP_07306444.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471720|gb|EFL34813.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 246

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDATIVDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++  
Sbjct: 81  VCRRVQAARPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +    + +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVML--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                          +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
 gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 16-3]
 gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
 gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +    + G   +     +   +  ++   D+  ++  L       +
Sbjct: 3   ILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRML--PSVDGM 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            + R +RA +  +P++ +S    +   ++   +G DD + KP    E    +  +     
Sbjct: 61  TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   ETG IR+    +   VQG       RE R+LEYLM + G+ V++T +   +
Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +    + NVV+ HIS+LR+KL +      + + R  GY  +
Sbjct: 181 WD-YHFDPQTNVVDVHISRLRQKLDHGQETSVIRTVRGAGYVFE 223


>gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++           
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 70

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 231


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++I+D    ++        +G  +      E    +      DV  ++  L    G +V 
Sbjct: 7   LVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHVSGIEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 67  RQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVRP 126

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          I + +D            L   E R+L   M   G+ +++ Q+   ++G
Sbjct: 127 SKVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSREQLLDQVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 187 R-DVYVDTRTVDVHVGRLRKVLTQHGGDDPVRTVRGAGYAL 226


>gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 222

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++     E   ++  +   D+  ++  L       +
Sbjct: 3   ILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPI--VDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR    + P++ ++   ++   +   DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +     +    G+   L  +E  +LEY+  N+ K +++T++   IY 
Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + NV++  I++LR K+  + G   + + R  GY +
Sbjct: 181 E-NSDFDSNVIDVFINRLRNKIDREFGKKLIHTVRGAGYIL 220


>gi|297192126|ref|ZP_06909524.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151222|gb|EDY67354.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 257

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 34  LVVEDDATIVDAIAARLRAEGFLVQTALDGPAAVDAADAWQPDLMVLDVML--PGFDGLE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 92  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 151

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 152 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 211

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 212 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 253


>gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A ++         +G+ +    +           + D+  ++            
Sbjct: 36  LVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLM--MPDGDGWT 93

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
           + R +R    +P+I ++        L  F+ G DD V KP   RE++ARV          
Sbjct: 94  VCREVRREMDLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRARNE 153

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +              +  L  +E  +L +L  + G+ +++ +I   ++
Sbjct: 154 RARGERLQFPGLVIDIPAREVKVDGRTIGNLTPKEFDLLLFLARHPGQVMSREKILEKVW 213

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V++HI  LR+KL        + +   +GY  + 
Sbjct: 214 G-YDFYGDLRTVDTHIKNLREKLGR--EHAWIATVWGVGYKFEV 254


>gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 232

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A   + G  +    +      +  +   D++ ++          +
Sbjct: 6   ILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
                +R H   P+I +S        +   + G DD V KP          + ++     
Sbjct: 64  TFTMKLREHHHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYKR 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + + ++ ++  V G    L   E +IL  LM + G+     +I
Sbjct: 124 FSNLLNEESSNVITIGGLELNTETKEFTVDGNAVKLTPIEYKILNLLMKHPGRVFPTEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   + A+  + +  HI  +R+K+  N      +     +GY ++ 
Sbjct: 184 YERIWN--ETAINTDTIMVHIRNIREKIEINPKNPKYLKVVWGVGYKLEK 231


>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
 gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
          Length = 227

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +    G +              +    D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLML--PGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120
           E+ R IR  S VP+I ++        +   ++G DD V KP   +E +    A +     
Sbjct: 63  EICRRIRQTSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRHLET 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + +          G    L   E  +L  L +  G+ +++ ++   ++GL
Sbjct: 123 QAEEVLKAADLEINLASHQVTRGGRDLGLTPLEYDLLVALASKPGRVLSREELLEQVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                +  +V  H+ +LR K+  +      V + R +GY I
Sbjct: 183 RH-GADTRLVNVHVQRLRAKVEVDPDNPQVVLTVRGVGYRI 222


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D    L G +G  +   +              D+  ++  L   G    
Sbjct: 4   ILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLML--PGVSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 62  EVCRELRVKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121

Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    +        +R+  +     V+GE   +P +E  +LE L+ N G+ + + Q+   
Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+G  D   +   ++ H+ +LR K+  N      + + R LGY  +
Sbjct: 182 IWGE-DYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGYKFE 226


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 91/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +         ++   +      +    L S  + D   ++  L   G   +
Sbjct: 4   ILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLML--PGMDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
            + + +R      P+I ++        +   + G DD + KP   RE++A      R + 
Sbjct: 62  TVLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++    +  +   + +  + +      ++  L  RE  +L Y     G+ + +  I 
Sbjct: 122 VDHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +A++G ++   E  +V+ HIS LR+K+  N      + + R  GY
Sbjct: 182 TAVWG-YEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGY 225


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D   + D        DG  +      E    L  +   D+  ++  L    +  LE+
Sbjct: 6   IIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIML--PKKDGLEI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAIY 116
            + IR   +VP+I IS        +   + G DD V KP   RE++        R     
Sbjct: 64  CKEIRQTKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMTEG 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + + +      + +     +     E   L  RE  +L++L   +G+  ++ ++   
Sbjct: 124 NKAEANEDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELLEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           ++G ++   +   V+  I +LR+K+ +       V +KR +GY  
Sbjct: 184 VWG-YEYYGDVRTVDVTIRRLREKIEDDASKAAYVLTKRGVGYYF 227


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 18/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--------EDVSAIEAFLI 54
           ++++D   + +    L   +G ++             ++A          D+  ++  L 
Sbjct: 10  LIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLML- 68

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G    E+ R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A
Sbjct: 69  -PGMSGTEVCRQLRSTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRA 127

Query: 115 IYRRLKVSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + RR   + N  +         + +  +     V GE   LP +E  +LEYL+ N G+ +
Sbjct: 128 VLRRGGEAENAEDATSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNAGRVL 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  
Sbjct: 188 TRAQLIDRIWG-SDYVGDTKTLDVHVKRLRGKIEEDPSSPVQLLTVRGLGYKF 239


>gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +I+D   ++D         G  +  F   E       S +  ++  +  L   G   
Sbjct: 3   LIYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLML--PGMDG 60

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAA 114
           L   R IR +     +P++ ++        +   D G DD + KP    E    +  +  
Sbjct: 61  LTAIRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLR 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R +  +N      + +    R+    G    L  +E  +L+YLM N  K V + ++ 
Sbjct: 121 RSTRDQAESNELNQYCLNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I+G +D   E   ++ HI  LR+KL    G   + + R +GY  
Sbjct: 181 NHIWG-YDYDGETRTLDMHIRTLRQKLGENGGS-CIKTVRGVGYRF 224


>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLML--PGADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G I +   G   +   +  PL   E  +L  L     +   +  +   ++G +
Sbjct: 124 APETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
 gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        D   +    + +       S + D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIML--PDIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  QILKQIRGKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCTQ 120

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+ +      +            +         L   E  IL  L  NRGK ++  ++F
Sbjct: 121 YNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 181 EKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 229


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  N+      +      DV  ++  L   G     
Sbjct: 4   LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVML--PGMDGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + + IR+ S+ P++ ++    +   +  F+ G DD + KP    E+LAR+     +    
Sbjct: 62  VIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R     + +   GR          L  +E  +L  LM  RG+ +++T I S ++ + 
Sbjct: 122 ESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++I+D   + +        +G  +               A+ D+  ++  L    G +V 
Sbjct: 5   LIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMGTEVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + +     + +P+I ++        +  F+ G DD V KP   RE++ RV         
Sbjct: 65  RILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRRSSE 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + + ++     V GE   L   E ++L  L    G+  ++  +   ++
Sbjct: 125 QTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +    +   V++H+++LR KL +    + + + R  GY I+ 
Sbjct: 185 G-YSYVGDTRTVDTHLTRLRTKLGSAG--ELIKTVRGFGYKIEE 225


>gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 247

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 21  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R +R    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 79  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 139 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 101/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G+  +   +       +   A  D+  ++          
Sbjct: 4   ILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASVDLVVMDIM--MPNMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +
Sbjct: 62  WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ ++       ++     + +   ++F LP +E  +L  L +  G  + + ++   I+G
Sbjct: 122 VAASQTVNVGKLQMNRRTYEVKTADDIFALPLKEFELLFKLGSYPGSTLTRDRLIEDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ H+++LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLEV 223


>gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 85/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G ++    S E    +  S +  +  ++  L   G    
Sbjct: 5   ILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIML--PGVDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            + +++R     + +I ++        +     G DD + KP +       I +    + 
Sbjct: 63  AVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++  N     P ++    R      E   L   E +I++  M N  K + + +I   
Sbjct: 123 PEEEIDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G  D   +  +V+ +I +LR K+       + +++   LGY 
Sbjct: 183 VWGN-DFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYR 225


>gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +  S+E  +  +  E    +   D+  ++  L        
Sbjct: 4   ILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLML--PSADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P++ +S        +     G DD + KP    E+ ARV A   R + 
Sbjct: 62  AVCRAIRQKKDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121

Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +       +F        + R     G+   L RRE  +L +   N G   +K ++F
Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+G+ D   +   V  HI+++R+K+         +++   +GY  
Sbjct: 182 DRIWGM-DALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGYRF 227


>gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
 gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
          Length = 239

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +      L   +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYQTQWLVNGAEVVALVRQSPPAIILLDLML--PGSNGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 73  ICREIRQFSDVPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +        ++          G    L   E R+L+ L    G+   + Q+ + +Y  +
Sbjct: 133 RDVPTDRAPLQIDESRFHASYHGNTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDEEKAFIRAVYGIGYRWE 232


>gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S+VP++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         + +   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQAQDAQSPLIIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDDEQPFIRAVYGVGYRWE 233


>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 235

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++D    +   +   ++   + +    L  +   D+  ++  L        
Sbjct: 4   ILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLML--PDCSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + I     VP+I +S    +   +   + G +D + KP  +R               
Sbjct: 62  DLCKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +V + R     +    + R     G    L  +E +ILE L+    K   + 
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +G +D   +   V+  I +LRKKL +       V +    GY +
Sbjct: 182 ELLQIGWG-YDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
 gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   +P++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQAQRPLPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 140

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
 gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
          Length = 241

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++          L
Sbjct: 16  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ RIIR  S VP++ +S   +          G DD + KP    E+        R +  
Sbjct: 74  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  ++  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 134 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240


>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
 gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +   N          +   ++  ++          L
Sbjct: 3   ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVM--MPNMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R+     P++ ++    +   +   D+G DD + KP             +    
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A          ++     + + +D R+    G    L R E  +L+ LM N  K +++++
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           I   ++G +D     N +E +I  LRKK   +     + + R +GY + + N
Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEGEGDARLIHTVRGVGYVLRESN 231


>gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|153813306|ref|ZP_01965974.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
 gi|149830596|gb|EDM85687.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
          Length = 222

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I      G S  G  + +  +        D+  ++  L G  G  
Sbjct: 1   MIYCVEDEKNIRELLIYTLETTGFSARGMANSKELKDALKEELPDLILLDIMLPGEDGYS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  +       +P+I ++   +    +   ++G DD + KP    E +ARV A+ RR 
Sbjct: 61  ILERLKASSETQNIPVIMVTAKEAEYDKVRGLEAGADDYITKPFGMMEFVARVKAVLRRC 120

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   +R+         + E   L R+E  +L+YLM N+G  + + QI   +
Sbjct: 121 SRQEEDKELKCDDLRLSVGRHKVYWKEEKVELTRKEFELLQYLMENKGLVMTRNQILCHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL        +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 220


>gi|118467592|ref|YP_886240.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118168879|gb|ABK69775.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGSQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +         QGE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G S++  N       L      DV  ++  L        
Sbjct: 3   ILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVML--PTMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + +++RA    P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  AVLKVLRATRTTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R          L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDDFPVKLIQTVRGVGYVIE 220


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKK 122

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N    +    +        +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++   D    +N V  HI+K+R K+         + +    GY I
Sbjct: 183 EAVW-KEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGYKI 228


>gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208]
          Length = 222

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +         E +  + +  ++ I+           
Sbjct: 1   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVM--MPNMDGF 58

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL + IRA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+  R  
Sbjct: 59  ELCQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 119 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 178 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 220


>gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
 gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD   + +        +G  +           + S    DV  ++  + G  G +  
Sbjct: 10  LVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMPGQDGVETC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV---AAIYRR 118
              R I       +I ++      + +  FD G DD + KPI  R +++R+        +
Sbjct: 70  LQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRRELK 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    + +   + +       +  G+   LP++E  +L +L  N     ++ ++   I+
Sbjct: 130 KEQEQVQIKIKDLTIDRGSYTIDKSGKTITLPKKEFELLYFLAKNPNMVFSRDELLQNIW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V    V+ HI K+R+K+ +    D + + + +GY  D
Sbjct: 190 GA-DVFVLARTVDVHIRKVREKIGD----DYITTVKGVGYKFD 227


>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++    +        +  + D+  ++           
Sbjct: 6   ILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R IR  S VP+I ++        +     G DD + KP        R          
Sbjct: 64  EVCRKIREQSNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRRVAD 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  +   + +    R  E +G+   L  +E  +L  L ++  +   + Q+   
Sbjct: 124 NSSVENKDVIKVPGLVINRATRTVEFEGKEIELTPKEFDLLWLLASHPNQVFTRDQLIYQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+   +   +  +V + + +LR+K+  +      + + R +GY  
Sbjct: 184 IWDT-EYCEDTGIVTTLVKRLREKIELDTANPRYIKTIRGVGYKF 227


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ DD   V         + G ++                   +  ++  L    G +V
Sbjct: 10  ILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLEV 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ +   A +++P+I ++        +   + G DD + KP   RE++ RV ++ RR  
Sbjct: 70  CKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRRAS 129

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G I++     +  + G+V      E ++L  L+  RG+   +  + + +
Sbjct: 130 NGAEVSDRLVLGDIQIDRTRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLNDV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G ++  ++   V++HI +LR+KL        +++ R  GY 
Sbjct: 190 WG-YETVIDTRTVDTHIRRLREKLGKSGS--YIETIRGFGYR 228


>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 247

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 26/243 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  +      +    L S    D   ++  L       ++
Sbjct: 5   LVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLML--PSMDGMD 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 63  VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122

Query: 122 S---------------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                                  +  + G I +          G+   + ++E  +L YL
Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
                + V++  + S I+  FD +V   +V+ HIS LR+K+  +    + + + R  GY 
Sbjct: 183 AERVDRIVSREILLSKIWD-FDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGYK 241

Query: 220 IDW 222
            + 
Sbjct: 242 FEV 244


>gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073]
 gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB
           [Escherichia coli CFT073]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241]
 gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241]
          Length = 221

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + I
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220


>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +                   +           + D+  ++           
Sbjct: 23  ILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVM--MPFVDGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR+ +
Sbjct: 81  DACERIRAKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDM 140

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              R     +      + +      V+G    L   E  +L +L AN G+   +  +F  
Sbjct: 141 QKARTAPPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFRE 200

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G ++   E N+V+  + +LR+K+         + + R +GY ++
Sbjct: 201 VWG-YEYIGETNLVDVCVRRLREKVEVEPSKPKIIVTVRGVGYKLE 245


>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
 gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
 gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e]
 gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL
           R2-561]
 gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +      +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVML--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                          +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++I+D    ++        +G  +    + E    + +    DV  ++  L    G ++ 
Sbjct: 7   LVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHVSGIEIC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 67  RQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVRP 126

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S        G I + +D            L   E R+L   M   G+ +++ Q+   ++G
Sbjct: 127 SKVGQVLTFGDIELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 187 R-DIYVDTRTVDVHVGRLRKVLTQNGGDDPLRTVRGAGYAL 226


>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
 gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   ++        D+G              L  S R D+  ++          
Sbjct: 5   IILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIM--MPKLDG 62

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           L + R IR   S+V +I ++   +    L  ++ G DD + KP   +    +I A +   
Sbjct: 63  LSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRA 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    E G + +        + GE   L  +E  +L  L+ N+ + + +  + +
Sbjct: 123 DAGAQETPEIYEIGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G ++   +   V+SHI +LR+KL+++     + + R  GY ++
Sbjct: 183 LVWG-YEYYGDLRNVDSHIKRLRQKLKSEG--RLITTVRGSGYKLE 225


>gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D        +G  +    +           + D+  ++  L     +  
Sbjct: 3   ILVIEDEERVADIMTKYLEKEGYKVFTCYTGRSGLDCFYKNKIDIVLLDLML--PDIQGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117
           E+   +R  S V +  I+   +L + +D FD G D+ + KPI  RE++ARV        R
Sbjct: 61  EICAEMRQVSNVHIFMITAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G  ++F   R  ++  E   L   E  +L  L +  G+  ++ Q+  A+
Sbjct: 121 EENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            G+ D    +  ++ HI  LRKK+  +      + +   +GY  +
Sbjct: 181 MGI-DFDGFDRTIDVHIKNLRKKIETDTKNPRYIKTVTGVGYKFE 224


>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
 gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
           [Cronobacter turicensis z3032]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+      ++P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  ++   S E           D+  ++  L        
Sbjct: 8   ILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLML--PEMSGE 65

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
           E+ R +R      +P+I ++   + +  +   D+G DD + KP +  E+LAR+ A   RR
Sbjct: 66  EVCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +    R+         L  RE  +LE+L  N G  V+K  IF  ++
Sbjct: 126 QPQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +   ++ + V+ +IS LR KL      D + + R +GY +
Sbjct: 186 G-YSFDIDSDAVKVYISYLRSKLTAGGEPDMIHTIRGIGYML 226


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G       S E           ++  ++  L   G    
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIML--PGIDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR     S +P++ ++        +  F+ G+DD V KP   RE+  R+ AI +R
Sbjct: 64  EVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123

Query: 119 LKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + + +  +               +  + G    L   E ++L  LM  +G+   +  + 
Sbjct: 124 DRRNRSNVQEVLRSGGIELDIGRHEATLDGRPLVLTLMEFKLLALLMKRKGQAQTREVLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S ++ + D+++    +++H+++LR+KL +      + + R LGY  D N
Sbjct: 184 SDVWDV-DKSINTRTIDTHVTRLREKLGDAG--RFIRTVRGLGYKFDEN 229


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D         G ++    + +           D+  ++           
Sbjct: 4   ILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIM--MPDIDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E+ R IR     P++ +S   S    +  F  G DD V KP             +     
Sbjct: 61  EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           AI    +          I +    R+  V+G    L ++E  +LE L  + G+  +K QI
Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +  ++G FD   +   V  HI  +R K+       + + +   +GY  + 
Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGYKWEK 229


>gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or
           CreC) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        D+G              L  S + D+  ++          L
Sbjct: 5   ILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIM--MPKLDGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            + R IR   S+V +I ++   +    L  ++ G DD + KP   +    +I A +    
Sbjct: 63  SVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRAD 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +    E G + +        + GE   L  +E  +L  L+ N+ + + +  + + 
Sbjct: 123 AGAQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   +   V+SHI +LR+KL+++     + + R  GY ++
Sbjct: 183 VWG-YEYYGDLRNVDSHIKRLRQKLKSEG--RLITTVRGSGYKLE 224


>gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +        GD G  ++              A  D+  ++  L        
Sbjct: 4   ILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGL--PDLDGG 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  ++VP+I ++   S++  +     G DD + KP H  E+LAR+    R  + 
Sbjct: 62  EVARRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRHREG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                        S        G+   L  +E  +L  L    GK  ++T+I   ++G  
Sbjct: 122 GEQVTIGELEVHLSKR-QVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGRS 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 181 -LERDSNVVDVHVANLRSKLRESGAYGYLRTVRGVGYAL 218


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR  S +P+I ++        +   + G DD + KP + RE+ AR+         
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK966]
 gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli]
 gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. TW14359]
 gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212]
 gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. G5101]
 gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. 493-89]
 gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. H 2687]
 gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044]
 gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
 gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +           L    + D++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDK-DIALVILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R IR HS+VP+I ++     +  L  FD GVD+ +                    + 
Sbjct: 65  QVCREIREHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQS 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +  + G I +       ++      L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 TESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL  K   D + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG--DYIRTIWGMGYKFEV 224


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +           R D   ++      G    
Sbjct: 16  ILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVM--MPGMDGF 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
            + R +RA     P + ++   SLQ  +     G DD V KP        R  +    A 
Sbjct: 74  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R     I +  +  +    G+   L   E  +L Y + N G  ++K +I  
Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 236


>gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus]
 gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus]
 gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 231

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A    I  +         +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N V +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
 gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
          Length = 235

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +E     +       +   D   ++  L       L
Sbjct: 4   ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLML--PSLSGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILAR 111
           ++ R IR      P++ ++   +    +   + G DD V KP   R         E  ++
Sbjct: 62  DVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 +   ++++   G I +  +       G+   L  +E  +L Y     GK +++ 
Sbjct: 122 SQPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + + ++G FD   E  +V+  +S LR K+  +    D + + R  GY ++
Sbjct: 182 ALLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 231


>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 PNSNDI---LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL +    D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215


>gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 223

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + +    L      D++ ++      G    
Sbjct: 3   ILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGNLPDLAVVDVM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +     +P++ ++    L+     F +G DD V KP   +E+L R+AAI RR   
Sbjct: 61  TLTEYLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRFDK 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N          +     +  +      LP +E  +L  L +   +   ++ I   ++G 
Sbjct: 121 KNQVTIQVGKLVIDRRSFEVVIGENTLILPLKEFELLALLASRPHQVFTRSYIMEQVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +E  + +H+ ++R++L        + + R +GY ++ 
Sbjct: 180 YDYDGDEQTLNTHVKRIRERLNRYDTAVEITTVRGVGYKLEE 221


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    +        +    D+  ++  L        
Sbjct: 29  LLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNL--PDLGGF 86

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           E+ R +R     VP++ ++    +   +   D G DD V KP   +E+ AR       + 
Sbjct: 87  EVCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSG 146

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             R     NR   G I++ +D            L   E  +L YLM N G+ +++ QI  
Sbjct: 147 GGRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQE 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   DE     VV+++I  LR+KL    G   + + R +GY +
Sbjct: 207 RVWNHRDEGSG--VVDTYIYYLRRKLGEP-GQSLIRTVRGVGYQL 248


>gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 242

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +     +              +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLML--PGCDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            L R IR  S VP+I ++        L   + G DD + KP   RE++ R         +
Sbjct: 71  TLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   V         + +   G      G+   L   E R+L+ L    GK  ++  +   
Sbjct: 131 QNDGVKAIEKTETALVIDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 256

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--------AREDVSAIEAFL 53
            ++I+D  L+++  +    ++G      +       L  +         + +V  I   +
Sbjct: 24  ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83

Query: 54  IGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +  G   L+L R+IR      P++ IS   S    +   + G DD + KP   RE+LAR 
Sbjct: 84  MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRV 168
            A+ RR ++                   E +  +      L  +E ++LE  M +  +  
Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + Q+   ++G  D   +   V+ HI  LR+K+  +      + + R  GY  
Sbjct: 204 PREQLLDQVWG-PDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255


>gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
 gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
          Length = 260

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 36  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWML--PGGSGI 93

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 94  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 153

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 154 ISPMAVEEVIEMQGLSLDPSSHRVMSNEHALDMGPTEFKLLHFFMTHPERVYSREQLLNY 213

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 214 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 256


>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 233

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +          ++       +  ++          +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114
            +   IR   ++P+I +S        +    +G DD V KP +  E++AR+         
Sbjct: 64  HMCMKIREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRRYMK 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   +  + N  E G +++        V+ E   L  RE  ILE L  N     +  QI+
Sbjct: 124 MNGFVVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K          + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++IDD   +           G  ++  ++ +    +  S   D+  ++   +      
Sbjct: 5   LILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDW--LMPDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R+   +P++ ++    +   +   ++G DD + KP  H E++ARV A+ RR  
Sbjct: 63  IEVCKRLRSADNIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRAS 122

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +        V    R+ +    V  L  +E  +L   M +  + + + Q+   ++G
Sbjct: 123 PDSRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE +VV  ++  LR KL        + + R +GY +
Sbjct: 183 -FDMEVESHVVAVYVGYLRDKLEAGGESRLIHTLRGVGYVL 222


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +               ++ D+  ++  L   G   L
Sbjct: 5   ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWML--PGVSGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P+I ++    +   +   D+G DD V KP    E+LARV A  RR +
Sbjct: 63  EICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +           +       +G+    L  +E  +L+YL+++  + + + QI   ++G
Sbjct: 123 EEDPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL        V + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEANGEKRLVQTVRGVGYVL 222


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + S +           D++ ++           
Sbjct: 15  ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIM--MPEIDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR  +
Sbjct: 73  TILQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTL 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174
            N  ++     +   G                  L   E  IL YL +NRGK ++  ++F
Sbjct: 133 YNQSSKPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELF 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             I+G        N V  HI  LR+K+R+ +     + +   +GY+I+ 
Sbjct: 193 QEIWGEK-YFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTIEK 240


>gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + MA+  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMAHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|322831802|ref|YP_004211829.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167003|gb|ADW72702.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G + +          L  +    +  ++  L   G   L
Sbjct: 14  ILIVEDEPKLAQLLIDYLEAAGYATQWLPDGHDVITLVKNQPPALILLDLML--PGSSGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 72  SICRDIRQFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKVILRRCVR 131

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +         QG    L   E R+L+ L    G    +  + + +Y  
Sbjct: 132 PGEHVAKETGLHIDEARFQATFQGHELELTPAEFRLLKTLSVKPGYVFTREVLLNNLYDD 191

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 192 Y-RVVTDRTIDSHIKNLRRKLESLDGEKAFIRAVYGVGYRWE 232


>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A    +G+++    + +      +    D+  ++           
Sbjct: 5   ILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIM--MPVMDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
              + +R  S VP+I ++     +  L  F  G D  V KP+  +    +I A +   Y 
Sbjct: 63  TACKELRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  N +     + +  +G + +V  E   L  +E  +L YL+ N+   +++ +I  AI
Sbjct: 123 EEENQNKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G+ D   +   V++H+ +LR+KL  K     + + R +GY  + 
Sbjct: 183 WGI-DYYGDLRTVDTHVKRLREKLGVKSY--LIATVRGVGYKFEV 224


>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 243

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G   E             +   D+  ++          L 
Sbjct: 12  LIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDI--QMPRMDGLT 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R IR+  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     ++      +R+  + R+         L R E  +LE  +A+  + + + Q
Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 190 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236


>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 231

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++        + +      +  + D++ ++  L        
Sbjct: 5   ILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        ++    G DD + KP +  E++ARV A  RR   
Sbjct: 63  TILQKIRETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRRYTK 122

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+  +     +            +         L   E  IL  L  NRG+ ++  Q+F
Sbjct: 123 YNDGGKPQEDIIDFGGLLMNRSTHECTFNERELTLTPIEFDILWILCENRGQVISSEQLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+   +G  + + +   +GY ++ 
Sbjct: 183 EQVWHEKYYKQSNNTVMVHIRHLREKMGGPMGKTEFIKTVWGVGYKVEK 231


>gi|213582579|ref|ZP_03364405.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 239

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 12  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGIDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 70  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 130 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 190 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 232


>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
 gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
          Length = 242

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWM--FPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + +R       +P+I ++     +  +   + G DD + KP   +E+    +     
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   +++        V  EV  +   E R+L + M ++ +  ++ Q+   
Sbjct: 123 SAPTCLEDPIDVQGLQLDPVSHRVTVGDEVLDMGPTEFRLLHFFMTHQERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK + +      + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTHSGHDRLIQTVRGAGYRF 225


>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + +    +  + + D+  ++           
Sbjct: 4   ILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIM--MPEIDGW 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   IR +   +P++ ++        +  F+ G DD + KP    E++ARV A+ RR +
Sbjct: 62  QLCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S ++         +        GE    LP +E  +L  L +  GK   + Q+   I+G
Sbjct: 122 ISTSQTIKIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +E  V+ HI +LR+K  +K     + + R LGY ++ 
Sbjct: 182 -YDYEGDERTVDVHIKRLREKF-SKYCIFVIRTIRGLGYRLEV 222


>gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +    + E    +    R D+  ++  L    G +V
Sbjct: 6   ILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGMDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            +  +  +    +P++ ++        +   + G DD V KP   +     I A +    
Sbjct: 66  AKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRRKA 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  +   + +    R+  V  +V  L   E  IL YL+   G    ++QI  A
Sbjct: 126 TETPKPSDVIKVQNLIIHPGRREVRVDDKVIDLTYTEFGILRYLVQRPGWVFTRSQIVDA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G  D  V +  V+  I  LRKKL        +++ R +GY  
Sbjct: 186 VRG-SDYFVTDRSVDVQIVGLRKKLG--FMGKYIETVRGVGYRF 226


>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 358

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D   A     G  +    S           + D+  ++  L   G   L
Sbjct: 134 ILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLML--PGLSGL 191

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++   + +  L+    G DD + KP   +E++ARV  + RR++ 
Sbjct: 192 EVCKKIRDSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQP 251

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +         ++ D +    QGE   L   E  +L  L ++  +  ++ Q+  A+
Sbjct: 252 EYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLDAV 311

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            GL D    + V+++HI  +R+K+ +       + +    GY  
Sbjct: 312 KGL-DFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGTGYRF 354


>gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +        G+ G +++  +           A  D+  ++  L        
Sbjct: 4   ILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGL--PDLDGG 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA  +VP+I ++   +++  +     G DD + KP H  E+LAR+    R  + 
Sbjct: 62  EVARRIRAGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQLRHREG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +  G     +  +    +G+   L  +E  +L  L++  GK  ++ +I   ++G  
Sbjct: 122 GEQISVGGLEVHLAKRQVL-FEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGR- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NVV+ HI+ LR KLR    +  + + R +GY++
Sbjct: 180 QLERDSNVVDVHIANLRAKLREAGAYGYLRTVRGVGYAL 218


>gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 EDL933]
 gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS)
           [Escherichia coli O157:H7 str. EDL933]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +    G  +                R D+  ++  L   G   +
Sbjct: 10  ILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLML--PGMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        ++  ++G DD + KP    E++AR+ A  RR + 
Sbjct: 68  EVCRRLRRESGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRSEE 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T     +  DG +     ++  L   E  +L  L     +   +  +   ++G 
Sbjct: 128 PTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRDVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  + +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 187 YRHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGYR 226


>gi|228913685|ref|ZP_04077312.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|301052645|ref|YP_003790856.1| transcriptional regulator [Bacillus anthracis CI]
 gi|228845973|gb|EEM90997.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|300374814|gb|ADK03718.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   A+   +G   +    + +    +    R D+  ++  L       
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVRPDLILLDIML--PDLDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117
             +   IR  + VP+  +S        +     G DD + KP   +     +       +
Sbjct: 71  YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N  + G I +          G +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLNLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +     + + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSKPNYLVTVRGLGYKLN 234


>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR------EDVSAIEAFLIG 55
            +++DD   ++       G +G  +              +++       D+  ++  L  
Sbjct: 4   LLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLML-- 61

Query: 56  KGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREI 108
            G   L++ R +R      P++ +S   +    +   + G DD + KP            
Sbjct: 62  PGVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRA 121

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           L R +               G + ++ D      +GE   L  +E R++E+ M N G+  
Sbjct: 122 LLRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVW 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G  D  V+   V+ HI  LR+KL  N    + + + R  GY  
Sbjct: 182 SRNQLIDQVWGT-DYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGYRF 233


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +              +   D   ++  L    G +V
Sbjct: 3   ILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R     S +P++ ++        +   + G DD + KP   R +LAR+ A+ +R +
Sbjct: 63  CRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKRTR 122

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               R++   +     +        V+G    L   E  IL +L  N G   ++ QI  A
Sbjct: 123 PPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQIIDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G  D  V E  V+  I  +RKKL +    D + + R +GY +
Sbjct: 183 VKGE-DYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYRL 223


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  K    +
Sbjct: 5   ILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE        L R   
Sbjct: 63  EVCREVRKQYDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      G + +  +    + +GE   L  RE  ++ YL  + G+ + +  + 
Sbjct: 123 AADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            A++G +D   +   V+  + +LR+K+ +     + + ++R +GY
Sbjct: 183 QAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGY 226


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   V++        +G S+E  N       + +  R D   ++          L
Sbjct: 3   ILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 223


>gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETTGHDKMVQTVRGTGYRF 225


>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 80/229 (34%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++           
Sbjct: 6   ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRVKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  + R   V GE   L  +E  IL  L+++  K  +   I
Sbjct: 124 LNQPKVEENKSVLEVGGVVINLEQRKLNVYGEQIELTPKEFDILYLLVSHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              ++           V  HI  LRKK+         + +   +GY+ +
Sbjct: 184 LQQVWADDYYDGGS-TVAVHIRTLRKKIGEDTRKNKLIKTVWGVGYTFN 231


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    L       +  ++          +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            +   +R  +++P+I +S        +    +G DD V KP +          ++   + 
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  E G +++        +  +V  L  RE  ILE L  N+G  ++  QI
Sbjct: 124 MNGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  ++   +    +N V  HI K+R+K+         V +   +GY I+ +
Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +        +G  +    + +            +  ++  L       +
Sbjct: 5   LLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWML--PEMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S V +I ++        +   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  DVCRELRKTSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRIEG 122

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N+ E       +          +G    L   E ++L  L A  G   ++ Q+  +I+
Sbjct: 123 QDNQEELMKRGDLTISEAQCRVWKRGSEISLTPTEFKLLLTLAAKPGVVYSRLQLLQSIF 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              D   +E  V++HIS+LRKK+ +       + +    GY  
Sbjct: 183 -EDDLFNDERTVDAHISRLRKKIEDDPSRPVYIQTVYGFGYRF 224


>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 237

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLML--PKVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R    +P+I ++   S    +   + G DD V KP  +R               
Sbjct: 63  EVARQVRKSHDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQGS 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   +     N+    G + +  +      +G    L  RE  +L YL  + G+ + + 
Sbjct: 123 TSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E      +    D+  ++  L       LE
Sbjct: 15  LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 73  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 132

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E             +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 133 TREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238


>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G      +            R D+  ++  L   G   L+
Sbjct: 19  LVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLML--PGRNGLQ 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + + IR  S VP++ ++        +   ++G DD V KP    E++ARV A   R    
Sbjct: 77  ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +++          G    L   E  +L  L     +   +  +   ++G +
Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG-Y 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234


>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
 gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G ++                + D++ I   ++       
Sbjct: 12  ILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDK-DIALIILDVMMPKMDGW 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R IR HS+VP+I ++     +  L  FD GVD+ +                    + 
Sbjct: 71  QVCREIRMHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQG 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G I V          G    L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 131 SGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVW- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 190 NYDYFGDARTIDTHVKKLRSKLGDKG--EYIKTIWGMGYKFEV 230


>gi|291523393|emb|CBK81686.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S E   S    + L +      + +   L+  G    
Sbjct: 4   ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    R  + 
Sbjct: 64  AVLEEIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHKEE 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176
                E               Q ++       + ++E  ILE L+ N  +  +K  IF  
Sbjct: 124 KETEEEHNLSFKKMVLNRDTFQVKIDGKILSKITKQEFAILELLLRNPKQVFSKEDIFEY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 184 AWDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 226


>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +   N+      +       +  ++      G   +
Sbjct: 7   ILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIM--MPGMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ R IR  + +P+I +S   +    +    +G DD V KP +                +
Sbjct: 65  EMCRKIRETNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRRYTQ 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       + + N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 125 LNPNSAVNEKAGNEITIRGLIINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 185 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235


>gi|295690072|ref|YP_003593765.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295431975|gb|ADG11147.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 254

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++E        E + +    D+  ++  L   GE  L
Sbjct: 22  ILIVDDDPGIRDVVSDFLSRHGYAVETAQDARTMEQVLARGPIDLIVLDVML--PGEDGL 79

Query: 62  ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R + + +  P I + S        +   + G DD + KP + RE+LARV A+ RR +
Sbjct: 80  AICRRLSSAADGPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARVRAVLRRRQ 139

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR--------ERRILEYLMANRGKRVAKTQ 172
                 +         G   ++       P+         E  +L   +    + + + Q
Sbjct: 140 EPRVADDAMGAACEFAGWRLDLVRRELRSPQSVVVNLSSGEFSLLRAFVERPQRVLTRDQ 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     G  D    +  ++  IS+LR+KL +  G + + + R  GY  
Sbjct: 200 LLDLARGR-DSDAYDRAIDVQISRLRRKLDDGGGGELIRTIRSEGYMF 246


>gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 254

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 21/232 (9%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   + D        +G ++E          L      DV  ++  L   G   LE+
Sbjct: 22  VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVML--PGFDGLEV 79

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
            R ++A   VP++ ++        L     G DD + KP   RE++ARV  + RR++   
Sbjct: 80  CRRVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERAR 139

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +    R     G    L   E  +L  L  +    + 
Sbjct: 140 ALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLT 199

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   ++   D +     V+SH+  LR+KL    G D V +   +GY+ +
Sbjct: 200 REKLLEEVWDWADASG-TRTVDSHVKALRRKL----GADLVRTVHGVGYAFE 246


>gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
 gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         + G +++             +A  D+  ++  L       L 
Sbjct: 4   LIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLML--PQIDGLT 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P++ ++   S+   +   DSG DD + KP   +E+LAR+ A+ RR   
Sbjct: 62  VCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRSTD 121

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + + +  R     G+   L  +E  ILE LM   G+ + +T I   ++ 
Sbjct: 122 APKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NV++ +I  LR+K+ +      + + R  GY +
Sbjct: 181 NYDTFNQSNVIDVYIRNLRRKIDDPFPVKLIQTVRGAGYRL 221


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +      +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVML--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                          +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S   D+  ++  L     +  
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQML--PEVEGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQ P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR   
Sbjct: 62  EVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + ++                  D       G+   L  RE  +L +L  + G+ + +  
Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + ++R+K+         + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYL 229


>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
 gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + + +         G  +              +   D+  ++  L   G   L
Sbjct: 4   ILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIML--PGLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + ++    +P++ +S        +     G DD + KP    E++ARV A     + 
Sbjct: 62  EILKSMKEDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIENYER 121

Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              R   G  +             D R   V  +   L ++E  +L YL  N  +   + 
Sbjct: 122 LKERFNAGIKKRQSITIRGLKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVFGRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++F  I+GL +   +   V  HI+++R+K   +      +++    GY  
Sbjct: 182 ELFERIWGL-ESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRF 230


>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 85/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        D  ++  F + E       + + D++ ++  L   G    
Sbjct: 3   ILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E+ + IR     P+I ++        +     G DD + KP +          ++     
Sbjct: 61  EILKKIRERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYTQ 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S +  +   +++  +  +     +   L   E  +L  L  NRGK ++  ++
Sbjct: 121 YNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           F  ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 181 FENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 230


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +     +     G  +   +  +    L    + D+  ++  L   G   L+
Sbjct: 5   LLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNL--PGMDGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R IR  S VPLI ++        L   + G DD + KP   RE++ARV      + R 
Sbjct: 63  VAREIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + V  D    +   E   L   E ++L  LMA  G+   + Q+  AI G
Sbjct: 123 SGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQG 182

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +      E  +++HI  LR K+  +      V++   +GY  
Sbjct: 183 VA-YEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRF 223


>gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   + +         G  +E     E         +  +  ++  L    G KV 
Sbjct: 6   LIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMDGTKVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R        P+I ++     +  +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 66  SKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTRRYAA 125

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +  +  +   + E   L  +E  +L+ L  NRGK + +  +   
Sbjct: 126 PSQPIMDTSLEISELYIDMENYEVFKRNEKIDLTLKEFELLKLLALNRGKVLTRNYLLDK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G ++   E   V+ HI  LRKK+ +       +++ R +GY I
Sbjct: 186 IWG-YEYFGETRTVDVHIRHLRKKIEDNDKKPQYIETIRGVGYKI 229


>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
 gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E           D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL + A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
 gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
          Length = 243

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R       +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    +      L      D++ ++  L        
Sbjct: 6   ILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIML--PDVDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     P+I ++   S    ++    G DD + KP    E++AR  A  RR   
Sbjct: 64  ELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              R +               + +  D R   V  +       E  IL YL  +RG  V 
Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++F A++     A   N V  HI  LR+KL +       + +   +GY+I+ 
Sbjct: 184 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 237


>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        DG  +      E    +      D+  ++  +    G +V 
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVLRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          I + ++            L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 STVGVRLEFDDIILDAETHKVSRAEAPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A           + G +++         +L ++A  D   ++  L       L
Sbjct: 3   ILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRML--PRVDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            + R +RA     P++ +S    +   +    +G DD + KP         + A      
Sbjct: 61  TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R +    R +T  + +    R          L  +E R+LE+L+ + G+ V ++ +  A
Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    + NV++ HIS LR K+        + + R  GY +
Sbjct: 181 VWD-YHFDPQTNVIDVHISNLRAKIDLPGLPPLIHTVRGAGYRL 223


>gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 STDPHTPKGLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G ++    S E    +      D+  ++  L   G    E
Sbjct: 6   LLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIML--PGIDGFE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +R     + +I ++        +     G DD + KP +  E+  R+ +I RR   
Sbjct: 64  VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +N     P ++ S  R          L   E +I++  M N GK + + +I   +
Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  D   +  +V+ +I +LR K+  N    D +++    GY 
Sbjct: 184 WG-DDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGYR 225


>gi|256785613|ref|ZP_05524044.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 221

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++          G  +    S E    L    R D+  ++  L   G    E
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGFE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR +  
Sbjct: 59  VCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 118

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  + +     +          GE   L   E R+L  L    G+ +++ Q+   ++   
Sbjct: 119 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-EH 177

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 178 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 218


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G S+                  D+  ++  L        
Sbjct: 3   ILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGL--PEMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +RA S VP++ ++        +   + G DD V KP   RE+             
Sbjct: 61  EVCRRLRARSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + +  + R     G+   L   E ++L+ L+   G+   + ++ +A++G
Sbjct: 121 PARDDTRGHGALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRAELAAAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   +  ++SH+  LR+KL +    D +++    G  +
Sbjct: 181 AGAQQ-SDRTMDSHLRNLRRKLADAGIPDAIETVHAQGMRL 220


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      +           D+  ++  L     + LE
Sbjct: 5   LVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWML--PELEGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +  
Sbjct: 63  VAKEIRKSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTENI 122

Query: 123 NNRAETGPIRVF-----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                   D    + +GE   L  RE  +L +L  + G+ + + 
Sbjct: 123 ETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E         R D+  ++  L       +
Sbjct: 6   ILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLML--PKMDGI 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R  +  VP++ ++    +   +   D+G DD + KP   +E+++R+ AI+RR++
Sbjct: 64  QVCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQ 123

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E G ++V+ + R+  ++G++  L  +E  +L +L  +RGK +++ Q+  
Sbjct: 124 ALPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++  +    +  +V+ HIS LR K+       + + + R +GY +
Sbjct: 184 GVWD-YHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228


>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 250

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D  +     +  S +    +      L  +   D+  ++  L       
Sbjct: 19  ILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVML--PDIDG 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++  P++ ++   S    L     G DD + KP +  E+ AR+    RR  
Sbjct: 77  FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQH 136

Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++        + +                  E      +E  +L +L  +  +     Q+
Sbjct: 137 MTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQL 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  ++GL     ++  V  HISKLRKK+         + + R +GY  
Sbjct: 197 YEQVWGLT-SIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKF 243


>gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 4/217 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A V         + G ++E   S           + D+  ++  L        
Sbjct: 4   ILLIEDDAEVARLVELELKEAGFTVEWAKSGMEGLVRHREKKPDLVVLDLGL--PDLDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   +++  +     G DD + KP H  E+      +  R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAEL-LARIQVQLRHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R          L  +E  +L  LM+  G+   + +I   I+G  
Sbjct: 121 GSEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWGKP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               + NV++ H++ LR KLR    +  + + R LGY
Sbjct: 181 -LGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGY 216


>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  S+  F + +       +   D++ ++  L        
Sbjct: 5   ILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIML--PDMSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
            L + IR +   P+I ++        +     G DD + KP            +    + 
Sbjct: 63  TLCQKIRVNHAYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRRYKK 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +      +      + + S   +  +  +   L   E  IL  L+  +GK V+  +
Sbjct: 123 YNSVQAGTTEESIIVHSGLVLNSSTHECILNEKPLDLTPTEFYILRILLERKGKVVSAEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +F  I+         N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 183 LFREIWKDEYYTKSNNTITVHIRHLREKMGDTVENPQYIKTIWGVGYKIE 232


>gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            V+IDD   + +        +G  +  + S+E  +     +  D+  ++  L    G   
Sbjct: 6   IVVIDDEEHILELIKYNLEANGFIVSTYTSVEAMQKSIGESPIDLILLDIMLPGMDGITA 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           L + R       VP++ +S        +   + G DD + KP   RE           A 
Sbjct: 66  LNIFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRRAD 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +  +    ++      +++  +      + E   L  +E  IL+ LM+N+GK + + 
Sbjct: 126 RNEVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLTRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   ++G +D   E   V+ HI  LR K       + +++ R +GY  
Sbjct: 186 VILDKVWG-YDYYGETRTVDVHIRYLRAKFEAYGIGEYIETVRGVGYRF 233


>gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N+    G + +  +       G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYL 230


>gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1]
 gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1]
          Length = 228

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++        +G  +  F++             D++  +  L       +
Sbjct: 5   IYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVML--PQMDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + IR  + Q+P++ +S   S    +   DSG DD + KP    E+ ARV  + RR++
Sbjct: 63  TAVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRRVQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +T  + +       +   +   L  +E ++L YL+ N+ + V + ++ + I+G 
Sbjct: 123 PKSKSIQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERVVERDELLNNIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LRKKL +      + + R +GY  
Sbjct: 182 YDFIGESRALDVHIRSLRKKLDDNGE-KYIKTVRSVGYRF 220


>gi|312140675|ref|YP_004008011.1| two component system response regulator mtra [Rhodococcus equi
           103S]
 gi|325675695|ref|ZP_08155379.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890014|emb|CBH49332.1| two component system response regulator MtrA [Rhodococcus equi
           103S]
 gi|325553666|gb|EGD23344.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMLTIVLRGEGFEPYVVGDGSQALTAVRETRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR + 
Sbjct: 63  DVCRVLRAESGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +            +  L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAEVLSIGDIMIDVPAHKVTRDNALISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRAKVEKDPENPEVVLTVRGVGYK 221


>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
 gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++   S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL + A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 242

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +     +              +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLML--PGCDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR   
Sbjct: 71  TLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N+           + +   G      G+   L   E R+L+ L    GK  ++  +   
Sbjct: 131 QNDGLKAAEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|284034895|ref|YP_003384826.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283814188|gb|ADB36027.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 236

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++ +D     +        +G      +              D+  ++  +    G  V
Sbjct: 5   ILVAEDDVKQAELIRRYLEREGHLTVVVHDGRAAIDEARRRSPDLLVLDVMMPKVDGLDV 64

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             + R  R A + VP+I ++   +    L   D G DD + KP + RE++ARV  + RR 
Sbjct: 65  CRVLRADRGAGAGVPIIMLTARSTEDDLLLGLDLGADDYLTKPYNPRELVARVRTVLRRT 124

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +              +  +  +  + G++  +   E +IL  L A+ G+  ++ Q+    
Sbjct: 125 RSRAEGEVYRAGDLEIDPERHEVRLAGDLVEVTPAEFKILACLAASPGRAFSRQQLLEHA 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD  V +  ++ H+  LRKK+         + +   +GY +
Sbjct: 185 FG-FDHYVFDRTIDVHVMNLRKKIEPAPATPQYLRTVYGVGYKL 227


>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
 gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D  ++  F + +      +S + D++ ++  L        
Sbjct: 34  ILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIML--PDVDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 92  QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYTQ 151

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +     +            +         L   E  IL  L  NRGK ++  ++F
Sbjct: 152 YNEGTKDEGDVIDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 211

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 212 HKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVEE 260


>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 226

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   + +        +G                     D+  ++  L    G +V
Sbjct: 4   ILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLGTEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +  +     + +P+I ++        +  F+ G DD V KP   RE+  RV        
Sbjct: 64  CKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRRSN 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS+   E GPI + +D     V GE       E ++L  L    G+  ++  +   +
Sbjct: 124 TETVSSTMIELGPITIDTDRHQVMVNGEEIFFTSTEFKLLHVLAQRLGRVQSRDVLLRDV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++HI++LR K+      D + + R  GY ++ 
Sbjct: 184 WG-YNFVDDSRTVDTHITRLRTKMGAAG--DLIKTVRGFGYKLEV 225


>gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 276

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        DG +++  +       L  S   D   ++  L   G    E
Sbjct: 4   LVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVML--PGLDGFE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           + R +RA     P++ ++   ++   +   DSG DD + KP    E+ ARV         
Sbjct: 62  ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRALGRRAPR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+R         V G    L  RER +LE L+ N G+  ++ +I   ++G
Sbjct: 122 PPDPPVVEVGPVRFHPATGTVTVAGRPVELRPRERALLELLLRNPGRLFSRDEILDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    NVV+ H+ +LR+KL        ++S R  GY +
Sbjct: 182 FDREPPASNVVDVHVCQLRRKLG--PASRLIESVRGYGYRL 220


>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
 gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
          Length = 232

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G      + +     L    R ++  ++  L   G   +
Sbjct: 6   ILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLP-NGLSGI 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A    
Sbjct: 65  DLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     + G + +    +      +   +   E R+L + M++  +   +TQ+   
Sbjct: 125 SSALSGEKPIDVGGLSLDPASQRVSANNKAVDIGPTEYRLLAFFMSHPERAYTRTQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  ++ HI +LRK L      D + + R  GY  
Sbjct: 185 VWG-GNVYVEDRTIDVHIRRLRKVLEPFGFADYIQTVRGTGYRF 227


>gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +     +              +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLML--PGCDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR   
Sbjct: 71  TLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N+  +          +   G      G+   L   E R+L+ L A  GK  ++  +   
Sbjct: 131 QNDGLKAVEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGKVFSREALLDK 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 250

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54
            ++++D  +++D  I    ++G    G +       L  S        R D+  ++  L 
Sbjct: 21  ILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML- 79

Query: 55  GKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R H   +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PQINGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   ++  A                   V+ E   L  +E R+L+  M+   +  +
Sbjct: 139 ALIRRQGFTSLAAAPVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249


>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N              D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLML--PGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKRVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +N   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
          Length = 247

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++   +  E    +      ++  ++           
Sbjct: 13  ILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIM--MPKLDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------A 113
            + + IR  S +P+I ++    +   +   + G DD + KP   +E+ AR+         
Sbjct: 71  GVCQEIRKESDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSDR 130

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++   + G + + ++ R      E   L   E  +LE L++  G   ++  I
Sbjct: 131 MTVNSNIPTSGINQIGFLTIDTNRRQVYKNNERVRLTGIEFCLLELLISRAGSPFSRAVI 190

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  ++  VV+ HIS+LR KL +     D + + R  GY  
Sbjct: 191 LQKVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 239


>gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
 gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGEHDRMVQTVRGTGYRF 225


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G       +             D+  ++  L       L
Sbjct: 6   ILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVML--PELSGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IRA+    P+I ++   +L   +   D G +D + KP    E+ AR+    R   
Sbjct: 64  EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPA 123

Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++   +                R+   + E   L  +E  +L Y++ N+ + ++  Q+ 
Sbjct: 124 STSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G FD   + N+V  +I  LRKK+        + + R +GY +
Sbjct: 184 TNVWG-FDYYGDTNIVYVYIRYLRKKIDAPFSTPYIQTVRGVGYML 228


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + +          +G  +    + +    L      D+  ++  L       LE
Sbjct: 5   LLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELA-EENPDIVVLDILL--PEIDGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110
           + R +R  S VP+I ++        +   + G DD + KP   RE+            L 
Sbjct: 62  VCRRLRQRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 ++ +    +  +G + +       +  G+V  L  RE  +L +L+ N+G   + 
Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   ++G +DEA++   V  HI  LR+K+ +       +++ R +GY  
Sbjct: 182 ERLLEEVWG-YDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGYRF 231


>gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis]
          Length = 232

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D+  ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYFYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N       +              +     + G+   L   E  IL YL  ++GK V+  
Sbjct: 123 YNQPINKQALENIEYDIRGLSINKNNHKCSLFGKELQLTPIEFSILWYLCDHQGKVVSSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++         N V +HI +LR+K++        + +   +GY+I+
Sbjct: 183 ELFEAVWKEKYLD-NNNTVMAHIGRLREKMKEPAKKPKFIKTVWGVGYTIE 232


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 98/233 (42%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E    L  +   D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVML--PKVDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
           ++ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI     
Sbjct: 63  DVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRAD 122

Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                  R +  + +   G +++  +  +   + E   L  +E  +L YL  ++G+ + +
Sbjct: 123 ISSLSQGREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
             + SA++  +D A +  +V+ HIS LR K+ +       + + R LGY ++ 
Sbjct: 183 DLLLSAVW-NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEE 234


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D   A     G  +    +         +   D+  ++  L        
Sbjct: 30  ILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVML--PDMSGF 87

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
              + +R      P+I +S   S +  +     G DD V KP                 +
Sbjct: 88  AATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTK 147

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  +  +  ++G +  L   E ++L Y M N  + ++K+QI   ++
Sbjct: 148 IDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + ++VES+IS +R+KL        + +KR  GY +
Sbjct: 208 D-YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 248


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
 gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       ++G  ++         +L +     +  ++  L   G    
Sbjct: 3   ILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + IR  S VP++ ++    ++  ++    G DD + KP    E+LAR+ A + R   
Sbjct: 61  AVLQAIRRTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGKP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R          L  +E  +L  L+  RG+ ++++ +   ++  
Sbjct: 121 QESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQVW-E 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 180 MNFDSDTNVVEVAIRRLRSKIDDPFEVKLLHTVRGMGYVLE 220


>gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D              +  +++  +       L S+   D   ++  L   G   L
Sbjct: 3   ILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIML--PGRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + R +R      P++ +S    +   ++  ++G DD + KP    E++ARV +I  R  
Sbjct: 61  SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + + +  R  +  G  F L  RE R+LE+LM   G+   +  I   ++ 
Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ +I +LR+K+        + + R +GY +
Sbjct: 181 -YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVM 220


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++       D G  +                R D+  ++  L        
Sbjct: 4   ILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIML--PKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            +  +IR  S +P+I I+   S +  +   D   DD + KP     ++ +       +  
Sbjct: 62  AVCELIRKESNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRRSGR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N +     + +  D     V GE   L +RE  IL  L+ ++GK + +  +   
Sbjct: 122 GAKAGENQKLIYRDLCLDLDNYQTFVDGEPVALTKREFEILRELLNHQGKVMTREILLEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  ++    + VV++HI  LR+KL      D +++ + +GY ID
Sbjct: 182 LW-KYEFYGNDRVVDNHIKNLRRKLE----RDYIETVKGIGYRID 221


>gi|268610638|ref|ZP_06144365.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G + +  N       L      D   ++  L        
Sbjct: 4   ILLVEDDEQLAKILTRFLNSEGYATDYANGQRDALRLFEENAYDCILLDISLK--DGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   ++ +S  P+I I+       T+  F+ G DD + KP   RE+LAR+  + RR + 
Sbjct: 62  SVCAAVKKNSDTPVIFITASADEACTVAGFEIGADDYIGKPFGTRELLARMKNVMRRAQK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G + +          G    +   E R+L    +N+ + +++ ++   ++ L 
Sbjct: 122 TSPLINCGNVTIDPIKGIIYKNGHELSMSALEYRMLLVFFSNKNQLLSRDRLAEELWSLT 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            E V +N +  +I +LR+K+ +       + + R LGY 
Sbjct: 182 KEFVSDNTLSVYIRRLREKIEDDPQDPKIIITVRGLGYK 220


>gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 227

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   +  ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 STDPHTSKGLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             +   ++  ++   +      L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDV--LMPRMDGL 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
              R +RA    VP++ ++   ++   +   D+G DD + KP    E           + 
Sbjct: 71  TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            AA        ++    G +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 131 YAAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G F+     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FEFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238


>gi|225569383|ref|ZP_03778408.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
 gi|225161591|gb|EEG74210.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D + +++  +      G+   GF          +    ++  ++  L G  G +
Sbjct: 1   MIFCVEDDSNIRELVVYTLESTGMKARGFEDGREFLEALALETPELILLDIMLPGEDGME 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  +      ++P+I ++   +    +   DSG DD V KP    E+++RV A+ RR 
Sbjct: 61  LLKRLKSSVKTREIPVIMVTAKGAEYDKVMGLDSGADDYVTKPFGMMELVSRVKAVLRRT 120

Query: 120 KVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + E       I +     +    G    L  +E  +L+ LM N    + + Q+  
Sbjct: 121 AKDDYKREDKIALGNIEIDIRKHEVRASGSTVNLTLKEYELLKRLMRNPNIVLTRDQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL        +++ R +GY +
Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGACGEK--IETVRGVGYKM 222


>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
 gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
          Length = 231

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   ++      F   G  +    S E         R D+  ++  L    G ++ 
Sbjct: 6   LIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMSGTEIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              +     S VP+I ++        +  F+ G DD V KP   RE++ R          
Sbjct: 66  RRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRSES 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + + G +RV        VQ     L   E R+L  L   RG+ +++  +   ++
Sbjct: 126 PASAPEKFDFGILRVDRAAHRAWVQEAEIALTALEFRLLMMLYDRRGRVLSRDLLLDEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     V    V++H+ ++R+KL      D +++ R +GY  
Sbjct: 186 GSH-VDVTARNVDTHVKRVREKLGAAG--DYIETVRGVGYRF 224


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +           D++ ++           
Sbjct: 3   ILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIM--MPHIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR  +
Sbjct: 61  TVLQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFTL 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174
            N  ++     +   G                  L   E  IL YL +NRGK ++  ++F
Sbjct: 121 YNQSSKPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             I+G        N V  HI  LR+K+++ +     + +   +GY+I+ 
Sbjct: 181 QEIWGEK-YFNSNNTVMVHIRHLREKMKDSVENPKFIKTVWGVGYTIEK 228


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  ++     +      +S + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  SQVP+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVCRQIRKDSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTAV 121

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +N  E G + +  D       GE   L  RE  +L YL  +  + + 
Sbjct: 122 VAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           +  +   ++G +D   +   V+  + +LR+K+         + ++R +GY
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVRRLREKIEENPSHPKILITRRGVGY 230


>gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679]
          Length = 233

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D       +DG  ++ F   +           D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +   P+I ++        +     G DD + KP +  E++ARV    RR + 
Sbjct: 63  KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQLRRFQK 122

Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N + +              + +        + GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+F A++G        N V +HI +LR+KL+        + +   +GY ++
Sbjct: 183 EQLFEAVWGEKFLD-NNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233


>gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
 gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           E   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGEEPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
 gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G +    +  +    +  S   D+  ++           
Sbjct: 4   ILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIM--MPTMDGW 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA++++PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G I +           +   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGYSQTIKLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D A +   ++ HI +LR++      F  +++ R LGY ++ +
Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFAMIADF-HIETIRGLGYRLEVD 223


>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL   A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGLG-SAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|271962953|ref|YP_003337149.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506128|gb|ACZ84406.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G      +  +         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDAALAEMLGIVLRGEGFEPSFVSDGDKALDAFRDTRPDLVLLDLML--PGADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR    
Sbjct: 64  VCRRIRAESGVPIVMLTAKSDTIDVVLGLESGADDYIVKPFKPKELVARVRARLRRTDEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G I +   G   +   E   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 TPEILQIGDITIDVAGHSVKRDEETINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G ++           +    + D+S +   ++       
Sbjct: 6   ILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEK-DISLLILDVMMPRMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R IR  S+VP+I ++     +  L  FD GVD+ +                      
Sbjct: 65  QVCREIRESSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRRTLG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G I +       ++ G+   L  +E  +L Y + NRG  +++ +I + ++ 
Sbjct: 125 SDAGDVMEAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   +++H+ KLR KL +K   + + +   +GY  D
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG--EYIRTIWGMGYKFD 223


>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         + + D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYFYPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN              +   + +  +     + G+   L   E  IL YL  NRGK ++
Sbjct: 123 YNNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             ++F  I+G        N V +HI +LR+KL         + +   +GY+I+ 
Sbjct: 183 SEELFENIWGEKFLD-NNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235


>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +    +      + S     +  ++      G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIM--MPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +                +
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       + +NN      + +  D     V  E   L   E  IL  L +N GK  +  
Sbjct: 124 LNPNSASKEKANNEITIKGMTINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638]
 gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G         +      ++   D+  ++      G+   
Sbjct: 4   ILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVM--MPGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR     P+I I+        L  F+ G DD + KP   +E++AR+ A+ +R   
Sbjct: 62  QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       V        + G   PL  +E  +L YL  N    +++  I   ++G 
Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD   +   V++HI  LR++L +    + + +   +GY  D+
Sbjct: 181 FDYFGDTRTVDTHIKSLRERLGDY--RELIQTVWGVGYKFDY 220


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  +   +  +    L      D   ++  L       +
Sbjct: 4   ILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLML--PVIDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
            L + +R      P+I ++        +   + G DD + KP   RE++A      R + 
Sbjct: 62  TLLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++   ++  +   + +  + +      ++  L  RE  +L Y     G+ + +  I 
Sbjct: 122 VDHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G ++   E  +V+ HIS LR+K+  N      + + R  GY++
Sbjct: 182 TAVWG-YEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTL 227


>gi|149908364|ref|ZP_01897027.1| DNA-binding response regulator BaeS [Moritella sp. PE36]
 gi|149808527|gb|EDM68462.1| DNA-binding response regulator BaeS [Moritella sp. PE36]
          Length = 226

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      ++             D+  ++  L       L
Sbjct: 8   ILVVEDEPSLAIVLCEYLAQAGFQTHIIDNGLEVIDWVKQKHPDLLILDLML--PNRDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  SQVP++  +        L   + G DD + KP   RE++AR+  + RR   
Sbjct: 66  DIYRELRTFSQVPVVMATARVDEIDRLLGLELGADDYICKPYSPREVVARIKNVLRRTVE 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +    + +               L   E R+L +   + G+   + Q+   IY   
Sbjct: 126 VAASSPQHGLTINDKQMKATFDSNELTLTPAEFRLLSFFNHHPGQVFNRDQLMQEIY-AD 184

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              V +  ++SHI  LRKKL++     + + S   +GY  
Sbjct: 185 HRLVTDRTIDSHIKNLRKKLQDVAPDNEYIKSIYGVGYRF 224


>gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G S+E  N       L      DV  ++  L        
Sbjct: 3   ILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVML--PWMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +RA    P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  TVVKTLRATRATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +  + R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRSKVDDNFPVKLIHTVRGVGYVLE 220


>gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
 gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANELALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|258425096|ref|ZP_05687967.1| two component response regulator [Staphylococcus aureus A9635]
 gi|257844930|gb|EEV68973.1| two component response regulator [Staphylococcus aureus A9635]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D+  ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIVVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D       ++G  +      +    +     EDV  +   ++      +
Sbjct: 11  ILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDII--ENEDVDLLVLDIMMPKVNGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R +  +P++ +S        +    +G DD + KP +  E   RV A+ RR   
Sbjct: 69  EVCKKVRQNKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYY 128

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            NN   +            +          GE   L  RE  IL  + +N+G+  +  +I
Sbjct: 129 LNNNNSSEESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++         N V  HIS+LR KL     G   + +   +GY I+ 
Sbjct: 189 FEKVWKEK-YFQSNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIEK 237


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N              D+  ++  L   G    E
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLML--PGVSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V 
Sbjct: 63  ICKTIRAKSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVV 122

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +        GP+R+        V G    LP +E  +LEYL+ N G+ + ++Q+  
Sbjct: 123 ADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGYKFE 228


>gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 221

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++          G  +    S E    L    R D+  ++  L   G    E
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGFE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+  R  + 
Sbjct: 59  VCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S++ A  G + +          GE   L   E R+L  L    G+ +++ Q+   ++   
Sbjct: 119 SSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-EH 177

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 178 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 218


>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 656

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     A        ++     +    L    + D+  ++  L       +
Sbjct: 3   ILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWML--PKLTGI 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-IHHREILARVAAIYRRL 119
           +L + +  A  + P+I ++   +    ++  D+G DD + KP      +    A + R  
Sbjct: 61  DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G + +           E+  L  +E  ++E  + N  +  +++ +   ++ 
Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+E   EN V +HI  LR+KL+      D +++   LGY +
Sbjct: 181 -FEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRL 221



 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + D    +    G  L   N  +           D+  ++  +    G  +
Sbjct: 525 LLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGIDL 584

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            ++ R     +++P++ +S     +T    F +G DD V KP
Sbjct: 585 CQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKP 626



 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +  G  +      + +E    +       +  R DV  ++          L
Sbjct: 400 LLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAGNGL 459

Query: 62  ELPRII 67
           EL   +
Sbjct: 460 ELLAEL 465


>gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +               +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEVQGLSLDPTSHRVMANEAPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDKMVQTVRGTGYRF 225


>gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51]
 gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD+ ++ +   A    +G +       E           D+  ++          +
Sbjct: 7   ILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAYETAPDLIILDLM--MPKLSGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP+I ++        +   + G DD + KP   RE++ARV  + RR   
Sbjct: 65  EVCRTLRKTTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRKLP 124

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   E               +  + G       +E  +L  L A+ G+   + QI   +
Sbjct: 125 QSKDTEPILKYDGLEINISSYELRLNGTPVSCTPKEVEVLYLLAAHPGQVFNREQIIQNV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  D   +   V++ I ++R+KL  +     + S   +GY  + 
Sbjct: 185 WG-SDYFGDTRSVDTQIKRIRQKLAGEKMKWGIKSIYGVGYKFEV 228


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G  +   +              D+  ++  L   G+   
Sbjct: 4   ILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLML--PGQPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR +SQVP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 62  EVIRQIRLNSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ +N    GP+R+  +     V+     +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 GEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  D   +   ++ H+ +LR K+       + + + R LGY  
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGYKF 224


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+         
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +   N          +   ++  ++          L
Sbjct: 3   ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVM--MPNMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R+     P++ ++    +   +   D+G DD + KP             +    
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A          ++     + + +D R+    G    L R E  +L+ LM N  K +++++
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           I   ++G +D     N +E +I  LRKK   +     + + R +GY + + N
Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEGESDARLIHTVRGVGYVLRESN 231


>gi|145225290|ref|YP_001135968.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315445587|ref|YP_004078466.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145217776|gb|ABP47180.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315263890|gb|ADU00632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +         QGE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G  +E          +      D+  ++           
Sbjct: 4   ILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR   + P+I +S        +  F+ G DD V KP   +E++ RV A+ +R + 
Sbjct: 62  SACREIRKFKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQG 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + N                    R   + G+   +  +E  +  Y++ N+G  + + ++ 
Sbjct: 122 AQNEENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLI 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++G +D   +E  +++HI  LRK L        + + R +GY  +
Sbjct: 182 SEVWG-YDFFGDERTLDTHIKLLRKSLGEYS--RCIVTLRGVGYRFE 225


>gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
 gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G         +           ++  ++  L G  G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIDMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHSERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETSGHDRMIQTVRGTGYRF 225


>gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVML--PGFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 140

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAATTPRNGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +      +    L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E     +             D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G      +  +      ++   D+  ++      G+   
Sbjct: 4   ILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVM--MPGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR     P+I I+        L  F+ G DD + KP   +E++AR+ A+ +R   
Sbjct: 62  QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       V        ++G   PL  +E  +L YL  N    +++  I   ++G 
Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD   +   V++HI  LR++L +    + + +   +GY  D+
Sbjct: 181 FDYFGDTRTVDTHIKSLRERLGDY--RELIQTVWGVGYKFDY 220


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +++DD   V+D         G  +E            S+    D   ++          
Sbjct: 5   ILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVM--MPRLDG 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  +++RA+    P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 63  LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  + +A        + +    R+    G    L R E  +L+  M + GK + ++ + +
Sbjct: 123 RPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E +I  LR+K   +     + + R +GY +
Sbjct: 183 EVWG-FDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 226


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +    + +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVML--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                          +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 NLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|49477046|ref|YP_035262.1| two-component response regulator; MrsR2 protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52144318|ref|YP_082509.1| response regulator [Bacillus cereus E33L]
 gi|49328602|gb|AAT59248.1| probable two-component response regulator; probable MrsR2 protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51977787|gb|AAU19337.1| response regulator [Bacillus cereus E33L]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   A+   +G   +    + +    +    + D+  ++  L       
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIML--PDLDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117
             +   IR  + VP+  +S        +     G DD + KP   +     +       +
Sbjct: 71  YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N  + G I +          G +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +     + + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLN 234


>gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 221

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GITYIKTVKGIGYKIE 220


>gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 227

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A +          +G +              +S   D+  ++  L   G    E
Sbjct: 5   LIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGL--PGMDGFE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P++ ++   S+Q T+   + G DD + KP    E+LARV       + 
Sbjct: 63  VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVRLRLSGGRQ 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T     +    R  +       L  RE  + E  + + G+ +A+ Q+ S ++G 
Sbjct: 123 TETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+ ++  LR+KL    G D +++ R +GY +
Sbjct: 182 YDFDPGSNVVDVYVRYLRRKL----GADRIETVRGMGYRL 217


>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
          Length = 236

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++      E    +    + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIML--PKRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCRELRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                E                 D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 230


>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
 gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D   +  F + +      +S + D++ ++  L        
Sbjct: 7   ILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIML--PDIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 65  QILKQIRQKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCTQ 124

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +     +            +         L   E  IL  L  NRGK ++  ++F
Sbjct: 125 YNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 185 EKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 233


>gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++          +G ++   +         +    D+  ++  L   G   LE
Sbjct: 5   LVVEDEPMINQAVTDRLRAEGYTVHQAHDGPAAVAAFTEHAPDLVVLDVML--PGFDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R I+A   VP++ ++        L     G DD V KP   RE++AR  A+ RR++  
Sbjct: 63  VCRRIQAIRPVPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVERA 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G I +    R   V G+   L   E  +L  L +  G   ++ Q+  
Sbjct: 123 AELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQLMG 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D +     ++SH+  LR K+        V +   +GY+++
Sbjct: 183 EVWGWADASG-TRTLDSHVKSLRAKIGAA----RVRTVHGVGYALE 223


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G +     +             D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------AI 115
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++ARV          
Sbjct: 63  VCKALRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEA 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N   E GP+R+  +     V G+  PLP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 TGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            ++G  D   +   ++ H+ +LR K+ +       + + R LGY  D 
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGYKFDV 229


>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  ++  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S++      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 SSSDEI---LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL      D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGEL--RDYIKTVRGYGYKFEV 215


>gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++     F   G S+    + E           D+  ++  L   G    
Sbjct: 4   ILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIIL--PGIDGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAI 115
            + + + +   ++ +I ++        +   + G DD V KP +  E++           
Sbjct: 62  NVCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRLH 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                       +GP ++ +  +     G    L  +E  +LE L+++    ++K ++  
Sbjct: 122 GNSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G ++   +   V+  + +LRKK+ +       +++   +GY 
Sbjct: 182 IVWG-YEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYR 225


>gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 245

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+G+   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRGDDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 233

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +          ++       +  ++          +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114
            +   IR   ++P+I +S        +    +G DD V KP +  E++AR+         
Sbjct: 64  HMCMKIREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   +  + N  E G +++        V+ E   L  RE  ILE L  N     +  QI+
Sbjct: 124 MNGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K          + +   +GY I+ +
Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232


>gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 236

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G +++  +       +   A  D   ++  L   G    
Sbjct: 3   LLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIML--PGVNGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  +++R      P++ ++         +  D+G DDV+ KP     ++AR+ A+ RR  
Sbjct: 61  KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+                          L  RE   LE L+ N+G  + K  I + ++ 
Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   + N+VE +I  LRKK+    G   + + R +GY ++ +
Sbjct: 181 -YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEED 223


>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G      +            + D+  ++  L   G    E
Sbjct: 5   LVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLML--PGMMGTE 62

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++     + +P+I ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   A        +  +     V GE   L   E ++L  L    G+  ++  +   +
Sbjct: 123 LPAAEGATISLGTLLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +    +   V++H+++LR KL      + + + R  GY ++ 
Sbjct: 183 WG-YSYLGDTRTVDTHMTRLRTKLGAAG--ELIKTVRGFGYKLEE 224


>gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 237

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L       +
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIML--PKRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V
Sbjct: 63  EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   AE               +  D      + E   L  RE  +L YL  + G+ + + 
Sbjct: 123 AAPVAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYLGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +      E    L      D+  ++  L    E+ 
Sbjct: 10  ILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIML--PDEEG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114
            E+ + IR  S VP++ IS        +  F  G DD + KP   +E+  R+       +
Sbjct: 68  YEVCKKIRKSSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILRRSS 127

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   +  +     GP ++  +  +    GE+  L  +E ++  YL  +  + ++K ++ 
Sbjct: 128 YHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKEKLC 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S ++G  D    +N +  HI KLR+K+  +      + + + LGY  
Sbjct: 188 SEVWGE-DYIGFDNTIMVHIRKLREKIEKDPSNPKHILNIKGLGYKF 233


>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G   E          L  +   D+  ++  L   G+   
Sbjct: 4   ILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVML--PGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ + IRA  ++P++ ++        +     G DD + KP            H     R
Sbjct: 62  KVCQEIRAVKEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYER 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +  I +      +    G I++    R   +         +E  +L +L +N     +K 
Sbjct: 122 LTTIEKNSDNEKSSIIIGRIKILLKARRVYIGENEVKFANKEFELLMFLASNPNIVFSKD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +   I+G  +   + + +  HI+++R+K+  +    + +++    GY  +
Sbjct: 182 TLLDRIWGE-ESLGDSSTITVHINRIREKIELDSSNPEYIETVWGAGYRFN 231


>gi|120402752|ref|YP_952581.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955570|gb|ABM12575.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +         QGE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADIDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE              
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     +  N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
 gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E            +  ++  L   G    
Sbjct: 4   ILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKKIREEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +R+ +  R   V         +E  +L +L ++      K ++F
Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRF 227


>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD   +     +     G  +           L    R D+  ++  L    G  + 
Sbjct: 5   LVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDIA 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R   A + +P+I ++        +   + G DD + KP + RE++ARV A+ RR+  
Sbjct: 65  RSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRRVSG 124

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              R     G + +  DG    + G    L   E  +L   M   G    + ++     G
Sbjct: 125 GTVRNRLEQGSLVLDLDGHQAWLGGNELELTPTEFALLSLFMRYPGHAFTRAELLEQGLG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     E  ++SHI  LRKKL        +++   +GY +
Sbjct: 185 -YAATGLERTIDSHIKNLRKKLEYDPAAPVIETVYGIGYRL 224


>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D       ++   +    + E    +  +    ++ ++           
Sbjct: 5   ILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIM--MPKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S +P++ +S        +   D G DD + KP +  EI+ARV +  RR   
Sbjct: 63  ELTKKIREISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                 ++       G    +   E RIL  LM + G+   K Q
Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           I+  I G +    +EN +  HISKLR K+ +       + + R LGY I+ 
Sbjct: 183 IYELIKGEY-FESDENTIMVHISKLRDKIEDDSKNPLYIKTIRGLGYKIEK 232


>gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 110-3]
 gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H263]
          Length = 229

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDCMVQTVRGTGYRF 225


>gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
 gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
          Length = 226

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D A +++  +      G    GF          +    ++  ++  L G  G +
Sbjct: 1   MIFCVEDEANIRELVVYTLETTGFEARGFEEGTSFFEALAEELPELILLDIMLPGEDGME 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  +       +P+I ++   +    +   D+G DD V KP    E+++R+ A+ RR 
Sbjct: 61  ILKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLRRT 120

Query: 120 KVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        IR+     +  V GE   L  +E  +L  LM N+   + + ++   I
Sbjct: 121 SKKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLEEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGQAG--EYIETVRGVGYRI 220


>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
 gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN              +   + +  +     + G+   L   E  IL YL  NRGK ++
Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             ++F  I+G        N V +HI +LR+KL         + +   +GY+I+ 
Sbjct: 183 SEELFENIWGEKFLD-NNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235


>gi|170019594|ref|YP_001724548.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ATCC
           8739]
 gi|169754522|gb|ACA77221.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
          Length = 240

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEETDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
 gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +G  +      E    L      D   ++  L       +
Sbjct: 4   ILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           +  ++IR  S+VP++ IS              G DD + KP    E+       + R   
Sbjct: 62  DFLKMIREQSKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +        + V  +    +  GE   L   E ++L   + N  K   K QI+
Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   D   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVW-NDDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   E            S    D+  ++          +
Sbjct: 107 ILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLM--MPFMDGM 164

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA     P+I ++        L   +SG DD V KP   RE++ARV A+  R  
Sbjct: 165 TCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNRTM 224

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + + +      V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 225 PKPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQK 284

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L        + +   +GY  D
Sbjct: 285 VW-NYDYFGEDRTVDTHVKMLRGHLGK--CRSYIATVWGIGYKFD 326


>gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium]
 gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636]
          Length = 233

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D       +DG  ++ F   +           D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +   P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N + +              + +        + GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+F A++G        N V +HI +LR+KL+        + +   +GY ++
Sbjct: 183 EQLFEAVWGEKFLD-NNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233


>gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
 gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
          Length = 240

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +E     E    +  +AR D   ++  L   G   L+
Sbjct: 14  LLVEDDPALLLMTCYNLEQRGYRVETAEDGEAALLVLETARPDAVVLDWML--PGLSGLD 71

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R IRA+     VP++ ++   + Q  +   D+G DD + KP     + AR+ A+ RR 
Sbjct: 72  VCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRRH 131

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S +R     I +  +    E  G +  L   E R+L+ L+ N  K  ++  +   I+G
Sbjct: 132 QSSYDRLSFADITLDPETHRVERAGRMLSLGPTEYRLLDLLIRNPRKVFSRENLLRRIWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  VE   ++ HI +LRK +      D V + R  GY++D
Sbjct: 192 Q-NIHVEIRTIDVHIRRLRKAINGPGEVDLVRTVRAAGYALD 232


>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
 gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRQIRDKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N   E   +++ +  R   V  E      +E  +L +L ++      K ++F
Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRF 227


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + + +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 218


>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
 gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
          Length = 241

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A+V+          G ++   N  E    +    +  +  ++           
Sbjct: 10  IMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVM--MPKLDGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD + KP   +E+ AR+ +++RR   
Sbjct: 68  SVCQQLRRESDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSNR 127

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++   +              +    +      +   L   E  +LE L+   G+ V++ +
Sbjct: 128 NSYVVKQNKDSSIINIGSLIIDKKRKQVFKDNKRLRLTGMEFSLLELLINRSGESVSRYE 187

Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I   ++    D  ++  VV+ HIS+LR KL  +    D + + R +GY  
Sbjct: 188 ILKEVWEYGNDSYIDTRVVDVHISRLRSKLEEDPANPDLILTVRGIGYLF 237


>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 236

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E      ++   ++  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR  +
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSAI 123

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N                     +  +   + E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VNEAVPVENDEDDILIGSIRIRPEYFEVYREDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|16761060|ref|NP_456677.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141243|ref|NP_804585.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213160755|ref|ZP_03346465.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416998|ref|ZP_03350142.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648513|ref|ZP_03378566.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289805497|ref|ZP_06536126.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25300978|pir||AH0771 probable two-component system response regulator STY2344 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503358|emb|CAD02494.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136869|gb|AAO68434.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 240

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|329923173|ref|ZP_08278661.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5]
 gi|328941559|gb|EGG37847.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5]
          Length = 228

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +    + +    +  S R D+  ++  L  K    +
Sbjct: 5   LLIVEDAPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEK--SGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S   +I ++        +   + G DD + KP   RE+ +R+ A+ RRL+ 
Sbjct: 63  DVCREIRQTSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +++                    G+   L   E +IL  L    G   ++ Q+  A  
Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              +    E  ++SHI  LR+KL +       + +    GY  
Sbjct: 183 -EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRF 224


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++          G  +      E    +    + D++ I   ++       E
Sbjct: 7   LVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQK-DIALILLDVMMPKMDGWE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IR +SQVP+I ++     Q  L  F  GVD+ ++KP   + ++ARV AI  R   +
Sbjct: 66  VCRTIRKYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSSTM 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    + G I +        V G+   L  +E  ++ Y   N+G  +++ +I + ++  +
Sbjct: 126 SQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNVW-NY 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   +   +++H+ KLR KL +K   D + +   +GY  + +
Sbjct: 185 DYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEVD 224


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   + +       +   D++ +   ++      +
Sbjct: 3   ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAEH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    E   I +       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 NVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 222

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D     D    +   +G  +    +             D+  ++  L        E+ 
Sbjct: 2   VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLML--PEMSGTEVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    +N
Sbjct: 60  RQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSAESN 119

Query: 125 RAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                     P+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   ++G
Sbjct: 120 ETGAPTLAAGPVRMDIERHVVTVGGAGVQLPLKEFELLELLLRNAGRVLTRGQLIDRVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 180 A-DYVGDTKTLDVHVKRLRSKIEPEPSAPRYIVTVRGLGYKFE 221


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E               ++  +  +  +  ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +          S   DV  ++           
Sbjct: 4   ILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVM--MPDTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----AAIY 116
              + I+    +P+I +S   +    L  F+ GVDD V KP    E++AR+      +  
Sbjct: 62  TACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  + +     I + + G    V GE   L  +E  +L  L+ N+G  +++ +I + 
Sbjct: 122 AEQKSDSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D    +  V+  I  LR KL +    D + + R +GY  +
Sbjct: 182 VWG-YDSFGVDRTVDWQIKLLRSKLGDY--RDSIKTVRGVGYKFE 223


>gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 244

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 7/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D + ++         +G  ++ F + E           ++  ++  L    G +
Sbjct: 5   LIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPDIDGLE 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
           + +L R   A  +VP+I ++        +   + G DD + KP   RE++ARV      +
Sbjct: 65  LCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAVLRRV 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G I +    R+         L  +E  +L+ L+ N+G+ +++  +  
Sbjct: 125 TEIGAEEEEEIRQGDIVMNCSRREVYKGSRQLDLTLKEFELLKLLLLNKGRVLSRDMLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            I+G ++   E   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 185 KIWG-YEYQGETRTVDVHIRYLRQKIEEDDNNPLYIETVRGIGYRF 229


>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGIGYKLEE 223


>gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
 gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
          Length = 279

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 55  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 112

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 113 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMSNEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDRMVQTVRGTGYRF 275


>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
 gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E           D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++   N           +  D+  ++  L   G   L
Sbjct: 6   ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWML--PGISGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           ++ + +R   S+VP+I ++    +   +   D+G DD + KP +    +    A + R  
Sbjct: 64  DICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +  +   + +  + R+      +  L  +E  +LEYLM++  + +++ QI   ++G
Sbjct: 124 EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223


>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 236

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +                   S E    L +    D+  ++  L   G   
Sbjct: 5   LILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVML--PGIDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R +R        P++ ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FEVCRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 118 RLKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +          +             ++ G    L   E ++L  L+  RG   ++  +
Sbjct: 123 RDRRGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            S ++ + D+ +    +++HI++LR+KL        + + R LGY ++ 
Sbjct: 183 LSDVWDV-DKTINTRTIDTHITRLREKLGETG--KYIKTVRGLGYKLEE 228


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G+  +     +    L      D   ++   +       
Sbjct: 4   ILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDV--LMPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
            + R +R  S VP++ ++     + TL  +  G DD V KP     +LA++       R 
Sbjct: 62  GVCRAVRRQSSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G I+V +  R     G+   L  RE  +L  L+ N+G+ +++ Q+   ++G
Sbjct: 122 ERKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           L D   ++  V+  +  LR  L        + +    GY ++ 
Sbjct: 182 L-DFEGDDRAVDVRVRSLRAALGKAGKQ--IKTVFKAGYRLEE 221


>gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A    +G+ +      +  E    +AR D+  ++  L   G+  L
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLML--PGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  TLCRQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172
                +   +R                +            E R+L   +++  + + + Q
Sbjct: 125 LPVNFQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G  +    +  ++  +S+LR++L +       + + R +GY +
Sbjct: 185 LVDLTQGR-EADPLDRSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVL 232


>gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
 gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
          Length = 232

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|167645552|ref|YP_001683215.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167347982|gb|ABZ70717.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 261

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D      G  G  ++  +     E   +    D+  ++  L   GE  L
Sbjct: 30  ILIVDDDPGIRDVVSDFLGRHGYVIDTASDSRTMEQALARGPVDLIVLDIML--PGEDGL 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R + A     +I +S        +   + G DD + KP + RE+LAR+ A+ RR + 
Sbjct: 88  AICRRLSAADGPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARIRAVLRRRQE 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRR--------ERRILEYLMANRGKRVAKTQI 173
                +         G   ++       P+         E  +L   +    + + + Q+
Sbjct: 148 PRTVDDGMGAACEFAGWRLDLVRRELRSPQSVVVNLSSGEFSLLRAFVERPQRVLTRDQL 207

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  +    +  ++  IS+LR+KL +  G + + + R  GY  
Sbjct: 208 LDLARGR-ESDAYDRAIDVQISRLRRKLDDGGGGELIRTIRSEGYMF 253


>gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D   +   ++ E        +  D   ++      GE   
Sbjct: 6   ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIM--MPGENGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
              R IRA S VP++ +S   +    +     G DD + K     EI+ARV         
Sbjct: 64  AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E G + +    R+  V G+   L  +E  +L+  + +     +  Q+   +
Sbjct: 124 NQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   D   +++ V  H+S+LR+K+  N      + +   +GY  +
Sbjct: 184 W---DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225


>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++           
Sbjct: 6   ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIM--MPKIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVARQIRIKHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRRFLT 123

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +  D R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYSVEHI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           F  ++           V  HI  LRKK+      D  + +   +GY+ +
Sbjct: 184 FQQVWTGDYYDGGS-TVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTFN 231


>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +    + E        +   +  +   ++  G   +
Sbjct: 5   ILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVDDS---LDLVILDVMMPGLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +RA S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  V
Sbjct: 62  ETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            V  +  +   + +   L   E R+L+ LM+ R K  +   I+
Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPFYIKTEWGRGYRF 228


>gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +   N  +    L      D+  ++  L        
Sbjct: 4   ILLVEDDPFIVNNLTEFLQSEGYIVSAVNGQKDALMLLKQEVYDIILLDISLK--DGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + I++    P+I ++      + +   D G DD ++KP   RE+L+R+ ++ RR   
Sbjct: 62  AVCKAIKSMGDTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRCGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   I+V ++      QG    L   E R+L   ++NRG  +++ ++   I+ + 
Sbjct: 122 VQSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            + V +N +  ++ +LR+K+ +       + + R LGY 
Sbjct: 182 GDFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGYK 220


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis
           z3032]
 gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis
           z3032]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ +         + +   L   E R+L+ L +  GK  ++ Q+ + +Y
Sbjct: 131 QRDLQTLDAQSPLVIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDDDQPFIRAVYGVGYRWE 233


>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 223

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G       S         + + D+  ++           
Sbjct: 4   ILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIM--MPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ETCKRIREFSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++ E   +    D      Q E   L  +E  IL   + +  +  ++ QI  +++G +
Sbjct: 122 KRSKIEFQGLVWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
           +   EE  ++SH+  +R+KLR         + +   +GY  +
Sbjct: 181 NANTEERTIDSHVKNIREKLRQVGFPIDQFLQTVWGVGYKWE 222


>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A V+         +G  +E     E           D+  ++  L   G   L
Sbjct: 5   ILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVML--PGLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++        +   + G DD V KP     + ARV A  RR +
Sbjct: 63  EVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRE 122

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +   G      G    L  +E R+L+  M    +  +K+ +    +G
Sbjct: 123 TDAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L     + NVVE+++ +LR+KL        + + R +GY +
Sbjct: 183 LG-YLGDPNVVETYVKQLRQKLEGDGQTRLIHTIRGVGYVL 222


>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
 gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G ++E  N  +       +   D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLML--PGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRDVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L ++     +K ++F
Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRF 227


>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 247

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A     G  + G  +        S    D+  ++  L    +    
Sbjct: 18  LVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVML--PDQDGFS 75

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
           + R +R     VP++ ++   +++  +    +G DD V KP    E              
Sbjct: 76  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 135

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   ++R     + +  +  +    G    L   E ++L YLM N  K V+++QI   
Sbjct: 136 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  ++   +  VVES+IS LR+K+ +      + + R +GY +
Sbjct: 196 VW-NYEFGGDSRVVESYISYLRRKI-DSTAPPLIHTIRGVGYVL 237


>gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 239

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G + E  +       L      D+  ++      G    
Sbjct: 8   ILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVM--MPGLDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA   +P+I ++        +  F+ G DD V KP   +E+ AR+ A+ RR   
Sbjct: 66  DVARKVRADRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRSAS 125

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E     +              +  +   L   +  IL+ L++   +   + ++  
Sbjct: 126 GEKEPEADTEIIRGALRLNPVSMKVRLGNDPVALTPGQFAILKQLVSYPDRVFTRNELLQ 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            + G +   V E  ++ HI  +RK + +       +++   +GY  
Sbjct: 186 EVSGDY-TGVYERTIDVHIKNIRKAIEDDPSHPRYIETIHGIGYRF 230


>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D AL+ +       D G ++    S E    +  S   DV  ++  L   G   L 
Sbjct: 6   LLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLML--PGMDGLS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R    +P+I I+     Q  +   ++G DD V KP+   E+ AR+ A+ RR    
Sbjct: 64  VCHELRVRGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAPV 123

Query: 123 NNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                     +  +        G    L R E R+L  L A  G+ V + Q+   I+G  
Sbjct: 124 RRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWGR- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           D      +++ HI +LR+K+         V + R +GY 
Sbjct: 183 DYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGYR 221


>gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++          G  +    + E    L    R D+  ++  L   G    E
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVML--PGIDGFE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR +  
Sbjct: 59  VCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 118

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N A       +          GE   L   E R+L  L    G+ +++ Q+   ++   
Sbjct: 119 SNDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-EH 177

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 178 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 218


>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
 gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      ++  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|282861073|ref|ZP_06270138.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563731|gb|EFB69268.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 245

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             S + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAESWQPDLMVLDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 232

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V D        +G  +      +    +  S   D+  ++           
Sbjct: 6   ILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIM--MPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR  +
Sbjct: 64  EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 ++ + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVEDNKSVLAIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEDYYEG-RNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+ G        G   E   + E      +++  D+  ++  L   G   LE
Sbjct: 5   LLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLML--PGMSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP++ +S        +   ++G DD + KP     I AR+ A+ RRL  S
Sbjct: 63  VCRRIRETSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMRRLAPS 122

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +          G    L   E ++L +L A   +  ++ Q+  
Sbjct: 123 QPGPAAGAEPTVHGDLEIDRLALRVCRSGTEVTLAPSELKLLLFLSAWPERTFSRQQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++       +  +V++ + ++R K+         + + R  GY  
Sbjct: 183 QVW-EHSYYGDARLVDACVMRVRSKIEEDPRHPRHIQTVRGFGYRF 227


>gi|329890727|ref|ZP_08269070.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328846028|gb|EGF95592.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++   +S    +   + A  D+  ++      GE  L
Sbjct: 7   ILIVDDDASLRAALQDYLSGAGYAVRTADSGGAMDARLAEAAPDLVVLDVM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +    + P++ +S        +   + G  D + KP   RE+LARV A+ RR  +
Sbjct: 65  SICRRL--QGRAPVLMLSAMGETTDRIVGLEVGAADYLPKPFEPRELLARVRAVLRRPAL 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +   I           R  +  G    L   E  +L   + + G+ +++ QI   
Sbjct: 123 LDEATDRPLIFEGWTLEVETRRLTDPAGAPVELTGGEFALLLTFLRSSGRILSRDQILEN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +G   E  +   V+  +S+LR+KL        +++ R  GY  
Sbjct: 183 THGPLAENFD-RAVDLAVSRLRRKLDRPGQAPLIETVRGAGYRF 225


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +++   A    +G +++     E   ++      DV+ I+  L    G ++
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGMEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R        P++ ++   S Q  ++    G DD + KP H  E+LAR+ A + R  
Sbjct: 63  IKALR--DEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL  +    P+++ R  GY  
Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPEGELKPIETVRGRGYRF 220


>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
 gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
          Length = 233

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D     F  +G  ++                  +  ++           
Sbjct: 5   ILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIM--MPKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           +  + IR   + P+I ++        +   + G DD V KP   RE++        R   
Sbjct: 63  DTLKEIRKSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRRFGP 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +  +  + +  G++  L  RE  +L++L +N G   ++ ++ 
Sbjct: 123 PTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++  ++   +   V+  I +LR+K+ +       + +KR +GY  D
Sbjct: 183 EKVW-EYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGYYFD 229


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYTQP 124

Query: 124 NRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +               ++ D    + +G+   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
 gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++       G +G  +           +    + D++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEK-DIALIILDVMMPRMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R +R  S+VP+I ++     +  L  F  GVD+ +                     +
Sbjct: 65  QVCREVRQSSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRANV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + G I +       ++ G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 LGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNVWD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL  K     + +   +GY  + +
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEKGN--YIKTIWGMGYKFEVD 225


>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 235

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L S    D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQML--PEVDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR++   P+I ++   S    +   + G DD V KP  +RE++ARV A  RR KV
Sbjct: 62  EVLRQIRSNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +               +          G    L  RE  +L YL  + G+ + + 
Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC
           BAA-895]
 gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLQYVHQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQLDAQSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 233

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +       +D ++       +      ++ + D+  ++           
Sbjct: 7   ILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLM--MPKIFGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +   + G DD + KP   RE++ R+  I+RR+  
Sbjct: 65  EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +N                +  D  +  +  E   +  +E +IL  L  N G+ +++ +I 
Sbjct: 125 ANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +D   +  VV++ I ++RKK+  +     + +   +GY  + 
Sbjct: 185 DKVWG-YDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231


>gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
 gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++  + +   +G         +           D+  ++  L   G   ++
Sbjct: 6   LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWML--PGGSGIQ 63

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +  + +     +P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  IAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++          R+         +G    +   E R+L + M +  +  ++ Q+   +
Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAIGPLGHDRLVQTVRGAGYRF 225


>gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1]
 gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +   +G S +    +      L  +   D+  ++  L       
Sbjct: 6   ILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVML--PDLSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + I  H Q+P++ IS        L  F  G DD + KP   +E+  RV A  +   
Sbjct: 64  HQLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKARLKTTT 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +                      E   L  +E ++L YL+ +  K V+K QI   ++G 
Sbjct: 124 KTIQFGNITITDG-----IVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWGE 178

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                + N +  HI +LRKK+  +      + +   LGY  
Sbjct: 179 DYFEFD-NTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKF 218


>gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G   +     +         + D+  ++  L        
Sbjct: 4   ILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLML--PNTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  + +P+I IS        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRRIRQEADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +             +    R   ++ +   L  +E  +L  L  +  +   K ++F
Sbjct: 122 LTGDSREARESLTIRGLTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++GL +   E + V  HI +LR+K+  +      +D+   +GY +
Sbjct: 182 ERVWGL-ESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRL 227


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +         G  +E          + +    D+  ++  L   G   L
Sbjct: 33  ILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRML--PGLDGL 90

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115
           E+ R IRAH   S VP++ ++     +  ++  D+G DD + KP   RE    +  V   
Sbjct: 91  EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V       GP  +    R+    G +  L  RE  +L +L+ N  +   +  +  
Sbjct: 151 TVPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLR 210

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G   E  + + V  H+ +LR+K+  +      + +   +GY  
Sbjct: 211 QVWGW--EIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 254


>gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 253

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G  +           L  +   D+  ++           
Sbjct: 16  ILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVM--MPKLNGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            + + IR  S+VP+I ++    +   +   + G DD + KP          + IL R+  
Sbjct: 74  GVCQKIRTQSEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRE 133

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 VS    +   +R+ +  R      ++ PL   E  +LE L+ + G+ V++++I 
Sbjct: 134 TNANRDVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEIL 193

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             ++G       +  VV+ H+++LR K+       + + + R +GY
Sbjct: 194 QELWGYAPRRIADMRVVDVHVARLRAKIEEDQRNPEYILTVRGIGY 239


>gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +   W  S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L + ++  S    +P++ ++     +  +   D G DD + KP   +E+    +     
Sbjct: 63  QLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +      + + S       QG+   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 VSPMSAEDIINMDGLILDSSSHRVSSQGQNVEMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVGGHDRMVQTVRGTGYRF 225


>gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 232

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 124 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|160881638|ref|YP_001560606.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430304|gb|ABX43867.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 234

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +    +      +       +  ++      G   L
Sbjct: 7   ILVVDDDKEIAELVEIHLVSDGYPVFKAYNAMEGLEILQKENIKLVILDIM--MPGIDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARV 112
            + + IR  S VP+I +S   +    +    +G DD V KP +  E++            
Sbjct: 65  SMCKKIRETSTVPIIMLSAKSADIDKIIGLSTGADDYVIKPFNPLELMARVKSQLRRFTK 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +        + +  +       G+   L   E  IL  L +N G+  +  +
Sbjct: 125 FNPSTYEDKNEKEITVTHLVINKETHVVMAYGKEVRLTPIEFDILYLLASNAGRVFSTDE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           IF  ++         N V  HI +LR+K+  +    + + +   +GY I+ 
Sbjct: 185 IFERVWNEKMYEAN-NTVMVHIRRLREKIEMDSRNAEIIKTVWGVGYKIEK 234


>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G       S         + + D+  ++           
Sbjct: 4   ILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIM--MPELDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +     G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ETCKRIREFSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++ E   +    D      Q +   L  +E  IL   + +  +  ++ QI  +++G +
Sbjct: 122 KHSKMEFQGLVWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
           +   EE  ++SH+  +R+KLR         + +   +GY  +
Sbjct: 181 NANTEERTIDSHVKNIREKLRQAGFPIDQFLQTVWGVGYKWE 222


>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 235

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      +           D+  +   L+      L
Sbjct: 6   ILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEE--DIDLLVLDLMLPEIGGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VA 113
           ++ R IR     S +P+I ++        +   + G DD V KP   RE++AR       
Sbjct: 64  DICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRR 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K   +  + G I +  +  +  +  +      +E  +L  L  N GK + +  +
Sbjct: 124 TGSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
              I+G +    +   V+ HI + R+KL N L  D   +++ R +GY  
Sbjct: 184 LKEIWG-YGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRF 231


>gi|229191306|ref|ZP_04318292.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228592111|gb|EEK49944.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   +E  V+ H+ +LR +   +     + + R LGY ++ N
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLELN 225


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V       F  +G+  E  +              D+  ++  L   G   + 
Sbjct: 13  LVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWML--PGMDGVT 70

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR    Q+P+I ++   S    +   + G DD V KP     ++AR+ A+ RR + 
Sbjct: 71  ICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQG 130

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N          T                 +  L  +E  +L YL  +  +  ++ Q+ 
Sbjct: 131 EKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +D   +E  V+ HI +LR K+ +      + +   +GY  D 
Sbjct: 191 ERVWG-YDFYGDERTVDVHIKRLRNKIGSN-EKPYLHTVWGVGYKFDE 236


>gi|49484576|ref|YP_041800.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423843|ref|ZP_05600272.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426526|ref|ZP_05602928.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431808|ref|ZP_05608171.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434768|ref|ZP_05610819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902273|ref|ZP_06310166.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906702|ref|ZP_06314550.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909678|ref|ZP_06317487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911924|ref|ZP_06319720.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282915220|ref|ZP_06322997.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920944|ref|ZP_06328662.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925850|ref|ZP_06333498.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|283959142|ref|ZP_06376583.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497616|ref|ZP_06665470.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511195|ref|ZP_06669891.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549803|ref|ZP_06672475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428942|ref|ZP_06821566.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|81696435|sp|Q6GE73|HSSR_STAAR RecName: Full=Heme response regulator hssR
 gi|49242705|emb|CAG41429.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272861|gb|EEV04963.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276157|gb|EEV07608.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257282687|gb|EEV12819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285364|gb|EEV15480.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312679|gb|EFB43083.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315359|gb|EFB45743.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282320941|gb|EFB51275.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323620|gb|EFB53936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326252|gb|EFB56556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329601|gb|EFB59122.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596732|gb|EFC01691.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|283788734|gb|EFC27561.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290918850|gb|EFD95926.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096547|gb|EFE26805.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465821|gb|EFF08351.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127291|gb|EFG56933.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193627|gb|EFU24023.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAFTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
 gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
          Length = 239

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDKMVQTVRGTGYRF 235


>gi|302530020|ref|ZP_07282362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438915|gb|EFL10731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                   + D+  ++  L   G   ++
Sbjct: 8   LVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLML--PGMNGID 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR +  
Sbjct: 66  VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEAE 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + T     +   G +    G+  PL   E  +L  L     +   +  +   ++G +
Sbjct: 126 PAESLTIGDLAIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223


>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
 gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        DG +       +    +  SA  D+  ++           
Sbjct: 4   ILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R  +   PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRKMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +++                    +V  LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGHSQTIQLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A +   ++ HI +LR++      F  +D+ R LGY ++ 
Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFNTITDF-HIDTIRGLGYRLEV 222


>gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 232

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  +V +     F ++G       +         S   D+  ++  ++      +
Sbjct: 7   ILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLD--MMMPEMNGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD + KP   RE++AR+ A+ RR+  
Sbjct: 65  DVCREIRRMSNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRRITE 124

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +                  +V+GEV P   +E  IL  L +N GK +++  I   I
Sbjct: 125 TPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISREDIMQKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +   +++H+ ++R+K+        + +   LGY  +
Sbjct: 185 WG-YNYEGDLRTIDTHVKRIRQKINVDNAKWALSTVYGLGYKFE 227


>gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
 gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGEDPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
 gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G ++E          L  +    +  ++  L   G    
Sbjct: 4   ILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVML--PGISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP++ ++        +     G DD V KP    E++AR  A  +  + 
Sbjct: 62  EICREVRKSKNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    E   +++    R   V G    L RRE  +L +L AN     ++  +
Sbjct: 122 LSSGASSGAERPIEVKGLKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRETL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G  D   +   V  H++++R K+  +    + +++    GY  
Sbjct: 182 FERIWGE-DHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGYRF 228


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G  +    S +    +QS  +  +  ++          +
Sbjct: 8   ILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL-IQSKRQPSLIILDVM--MPEMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  +Q P++ +S   S    +    +G DD + KP    E+ AR+ A  RR + 
Sbjct: 65  EVCKQLRETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRREQR 124

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +   G      G   PL  +E +I+E L  ++G+  ++ QI+  
Sbjct: 125 IHTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++GL D   +++ +  HI K+R KL         + +   +GY  D
Sbjct: 185 LWGL-DADGDDSTITEHIKKIRAKLAAHAQNRSFIQTVWGIGYKWD 229


>gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +           D++ ++  L   G   L
Sbjct: 5   ILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIML--PGASGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  AICQKIRDKHTYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E     +         +  +  +  +   L   E  IL  L  N+G  V+  Q+F
Sbjct: 123 YNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231


>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|300789808|ref|YP_003770099.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799322|gb|ADJ49697.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                   + D+  ++  L   G   ++
Sbjct: 8   LVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLML--PGMNGID 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR +  
Sbjct: 66  VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEAE 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + T     +   G +   +G+  PL   E  +L  L     +   +  +   ++G +
Sbjct: 126 PAESLTIGDLAIDVPGHEVTREGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223


>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++   A   D G ++                  D+  ++  L        
Sbjct: 5   ILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLML--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            +  I+R  S+ P+I ++      + +  FD   DD + KP     +L R+        +
Sbjct: 63  AVCEILRKESRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTEQ 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +      I + ++  +  V  +   L  RE  IL+ L+ N GK  ++  +  ++
Sbjct: 123 GTEEEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   ++ +V +HI  +RKKL    G D +++ R +GY I+ 
Sbjct: 183 WG-YEYYGDQKIVNTHIKNIRKKL----GVDYIETIRGVGYKIEK 222


>gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G  +   ++      +       +  ++      G   +
Sbjct: 8   ILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVM--MPGMDGI 65

Query: 62  ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           E     R I       +  ++      + +  FD+G DD + KPI  + ++++V      
Sbjct: 66  EACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +R  +  +N  + G I +  D        E   LPR+E  +L  L +  GK   +  I  
Sbjct: 126 FRDEETGSNIVKVGEIVINRDEYKVVKNKEEMILPRKEFELLSLLASKPGKVFKREDILD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  V    ++ HI KLR+K+ +        + + +GY  
Sbjct: 186 KVWGN-EVVVGGRTIDVHIRKLREKIGDDS----FKTVKGVGYKF 225


>gi|320008595|gb|ADW03445.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ +   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRADDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
 gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
          Length = 236

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++     E         + ++  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR ++
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQI 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
           +N   +           +  ++ E F +           +E  +L YL+  +G+ + +  
Sbjct: 124 ANEVVKDDVDDEDIVIDNIRIRPEFFEVYRDDTLLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|206578805|ref|YP_002237485.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288934410|ref|YP_003438469.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290508614|ref|ZP_06547985.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
 gi|206567863|gb|ACI09639.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288889139|gb|ADC57457.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289778008|gb|EFD86005.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPTLINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233


>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
           raciborskii T3]
          Length = 272

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKG 57
           ++++D  L+++  +     +G  +           L  +            +   L+   
Sbjct: 44  LIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLMLPQ 103

Query: 58  EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L++ R++    + +P++ +S   S    +   + G DD + KP   RE++AR  A+ 
Sbjct: 104 INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRALL 163

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + SN                 E +         L  +E R+LE  M+   +  ++ Q
Sbjct: 164 RRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSREQ 223

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 224 LLDQVWG-PDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 271


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D        +G  +                   +  ++  L       
Sbjct: 5   LILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIML--PYRDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR +
Sbjct: 63  MEVCREVRKEHDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQ 122

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S   +ETG   +         D      +GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 123 RSAEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             A++G +D   +   V+  + +LR+K+ +       + ++R +GY  
Sbjct: 183 LQAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSSPLWIVTRRGVGYYF 229


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++E  +         ++   D+  ++           
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVM--MPNLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ +++R  S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 63  EVAKMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   N      + V  DG    V  E  PL  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 123 KNWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D + E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 183 -YDYSGETRMIDTHIKNLRKKLNLP----YIKTVKGIGYKIDE 220


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +          +G ++E  +              D+  ++  L   G    
Sbjct: 3   ILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ + +R  S+VP++ ++        +   + G DD + KP + R     I A +    R
Sbjct: 61  EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYER 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +R ET  I +    R+    G+   L   E  ILE LM + G+ +++  +    
Sbjct: 121 DTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMENF 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y       +   ++ HIS LRKKL N  G D + + R +GY  
Sbjct: 181 YNRKATPFD-RSIDMHISHLRKKLEN--GDDLIKTIRGVGYQF 220


>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
 gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
          Length = 244

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 12  ILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLM--MPGEDGL 69

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + R +R A+ + P+I ++        +   + G DD + KP + RE             
Sbjct: 70  SICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRRP 129

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R     GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 130 APEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMSRE 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 190 KLAQQARGR-EFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVF 238


>gi|322389821|ref|ZP_08063363.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143481|gb|EFX38917.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 217

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +      +   +L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGYEVFEAGDGQEALYLFHREAPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++ +      L  F    D    +      +L        +   
Sbjct: 61  EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGEMADGY-LEKPFSLSLLKVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|331673604|ref|ZP_08374367.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
 gi|331068877|gb|EGI40269.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRSKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +++   A    +G +++     E   ++      DV  I+  L    G ++
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R      + P++ ++   S Q  ++    G DD + KP H  E+LARV A + R  
Sbjct: 63  IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 249

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKG 57
           ++++D  L+++  +     +G  +           L  +            +   L+   
Sbjct: 21  LIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLMLPQ 80

Query: 58  EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L++ R++    + +P++ +S   S    +   + G DD + KP   RE++AR  A+ 
Sbjct: 81  INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRALL 140

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + SN                 E +         L  +E R+LE  M+   +  ++ Q
Sbjct: 141 RRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSREQ 200

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 201 LLDQVWG-PDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 248


>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++      G  G  L   + +       S    D+  ++  L G  G + 
Sbjct: 6   ILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASGIEF 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +       VP++ ++     +  +   ++G DD + KP   RE++AR+ A      
Sbjct: 66  ARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRRAS 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   +R+  +            +   E R+L + M +  +  ++TQ+   I+
Sbjct: 126 PDSEGGVIEVAGLRLDPESHRVTGGSVDIEVGPTEFRLLTFFMTHPERVFSRTQLLDRIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        + + R +GY +
Sbjct: 186 GR-NAYVEERTVDVHILRLRKALVPSGFDALIQTVRGVGYRL 226


>gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 236

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G       + E    +      D+  ++          +
Sbjct: 7   ILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVM--MPKLNGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           +    IR   ++P+I +S        +   + G DD + KP +            R    
Sbjct: 65  DTCLKIREEREMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYK 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    K   N  E   + +  +  +  +   +  L   E  IL  L  NRGK  + 
Sbjct: 125 FNTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSI 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
             I+ +++   +    +N V  HI K+R+K+ +       + +   +GY I+ 
Sbjct: 185 ENIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +               +  D+  ++  L   G   L
Sbjct: 5   ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWML--PGISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           E+ + +R      P+I ++    +   +   D+G DD + KP      +    A + R  
Sbjct: 63  EICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTS 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +  +   +R+    R+      +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 123 ENNADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL N      + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLENNQEKRLIQTVRGIGYVL 222


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+ +     F  +G  ++             +   D+  ++  +       ++
Sbjct: 6   LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVI--PKIDGVK 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + + +R  S++P+I ++    L+  L+  ++G DD + KP   +E++ RV  +  R  KV
Sbjct: 64  VCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +         +G+   L  +E  +L+ L  N  K + +  + + ++G+ 
Sbjct: 124 QEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + N+V+ +I  +R KL +K     + + R  GY +
Sbjct: 184 -SDYDSNIVDVYIKNIRNKLEDKP-PKLILTIRGRGYML 220


>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                  A+ D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLML--PGLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  +IRA S VP+I ++        +   +SG DD + KP + +E++AR+    R    
Sbjct: 63  QVCDLIRAESGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++          V  +G +     E   L   E  +L  L +   +   +  +   ++G 
Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 182 YQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           + + +RA   + P++ +S        +   + G DD + KP   R               
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    +++N    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 KQEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +  ++G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++ R++R+ S VP++ ++        +   +SG DD + KP   +E++AR+ A   R   
Sbjct: 63  DVCRVLRSDSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ +          G    L   E  +L  L     +   +  +   ++G 
Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGYK 221


>gi|311032119|ref|ZP_07710209.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 236

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   ++  ++ E           D+  ++   +      
Sbjct: 6   ILMVDDEQSIIDMMKLVLTKEGFQQVDTCSTGEMALHKLKHHAYDLILLDI--MLPDMTG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
            E+ + IR  +  P+  +S   S    L  F  G DD + KP +      R  +     +
Sbjct: 64  YEICQAIRKTTDAPIFFLSAKTSDLDKLTGFAHGGDDYITKPFNPLEVVARIKVQLSRYL 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  E G   +     +  V GE   L  +   +L +   N  +   K Q++ 
Sbjct: 124 KTTTSKKEDVLEFGRFNLNLQSAELTVLGESVVLSGQLYHLLVFFCKNPNRIFTKEQLYY 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   +  V+EN V  HI KLR+K+       + + + R +GY +
Sbjct: 184 HVW-KDNILVDENTVMVHIRKLREKIEENPSKPEYIKTVRGIGYKL 228


>gi|290770163|gb|ADD61922.1| putative protein [uncultured organism]
          Length = 241

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 15  ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 72

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL ++I   H    +I ++        +  ++ G  D + KP   R +  ++ A++  L+
Sbjct: 73  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIRALQRKIKAMFAMLE 132

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 133 HHKPAKDIYDDGRLFLDFSEQMASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 193 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 234


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   A+ D++ ++  L   G   +
Sbjct: 5   ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWML--PGLTGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL R +RA    +P+I ++    +   +   D+G DD V KP    E+LAR+ A   R  
Sbjct: 63  ELCRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V  +  +   + +    R+         L  +E  +LEYL++N  +   + QI   ++G
Sbjct: 123 EVDEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEEQGEKRLIHTVRGVGYAL 222


>gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36]
 gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++         G  +                  ++  ++  L  G G K 
Sbjct: 5   ILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGSGIKY 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +     S +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMRRVA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        ++            V  +   E ++L + M +  +  ++ Q+   ++
Sbjct: 125 PMTQDTVIDIHGLQLDPVAHRVSANDTVIDIGPTEFKLLHFFMTHPERVYSREQLLDNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GM-NVYVEDRTVDVHIRRLRKALTPSEHDKYVQTVRGAGYRF 225


>gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G       S +    +      D   ++          L
Sbjct: 5   ILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRKSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRANFRKVDR 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                     +  +  +   L  +E +IL  LM N    + + +
Sbjct: 123 LFKEWNELSPNREKIDSPLILNDKTFEAFLNNKKLNLSTKEFQILSMLMHNPNNVLTRER 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++             S   DV  ++      G    E
Sbjct: 4   LLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIM--MPGRNGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +R      P++ ++         D FD G DD + KP     ++AR+ A   R   
Sbjct: 62  VVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L RRE  +LE+LM N+G+ V KTQI  +++ +
Sbjct: 122 ERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWDV 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   +ENVVE +IS LRK++    G   + + R +GY +D
Sbjct: 182 -NYTGDENVVEVYISYLRKRIDAPFGCKSIQTVRGVGYRLD 221


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G  +E                 D+  ++  L   G    E
Sbjct: 5   LIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLML--PGMPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR    
Sbjct: 63  VCRQLRLSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTPD 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        + +  D     V G    +P +E  +LE LM N G+ + + Q+   +
Sbjct: 123 DADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R ++         + + R LGY  +
Sbjct: 183 WGT-DYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGYRFE 226


>gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S   ++  ++   +      L
Sbjct: 13  ILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKVGSYDPELIVLDV--LMPRMDGL 70

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 71  TAARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARLRALLRRSS 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G +R+    RD    G    L R E  +LE  +A+  + + + 
Sbjct: 131 YTGLQGAALPEGDVMAFGDLRMDLTTRDVTRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238


>gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira
           defluvii]
 gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira
           defluvii]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         ++  +++  ++ E    L  +   D+  ++  L       L
Sbjct: 3   ILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIML--PVLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+     P++ ++   ++Q  +   D G DD + KP    E+LAR  A+ RR  
Sbjct: 61  SLCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPFAFAELLARARALLRRGG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T     +          G    L  +E  +LE+L+ N+ + + +T I   ++ 
Sbjct: 121 PQLQARLTAADLELDPATHRVCRGGNEIALTNKEYALLEFLLRNKNRVLTRTAIIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +       N+V++HI  LR K+        + + R  GY ++
Sbjct: 181 IS-YDPMTNIVDAHIRSLRAKMDRDFSPALITTVRGAGYMLE 221


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54
            ++++D A+++D  +    ++G  +   ++      +  +          D+  ++  L 
Sbjct: 21  ILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML- 79

Query: 55  GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L+L R +    + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 80  -PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCR 138

Query: 114 AIYRRLKVSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR +   +  +    +      F +     V+GE   L  +E R+LE  M+   +  
Sbjct: 139 ALLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVW 198

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 SRDQLIEQVWGA-DFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGYRF 250


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F ++G ++      +    L S    D+  ++  + G  G +V
Sbjct: 6   LLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGTSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  +  + VP+I ++   +    +   ++G DD + KP   RE+LARVAA+ RR++
Sbjct: 66  CRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRIR 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E G I++       + +G    L   E R+L++ M + G+  ++ Q+   ++
Sbjct: 126 PALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSRGQLLDGVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G     +E   V+ HI +LRK +  +   DP+ + R  GY+++
Sbjct: 186 GTG-SDIELRTVDVHIRRLRKAIGLEGAKDPIRTVRSAGYALE 227


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G + E                 D+  ++  L       LE
Sbjct: 8   LVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLML--PVLDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S  P+I ++   ++Q  ++  DSG DD + KP    E+LARV A  RR+  +
Sbjct: 66  VARRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++   
Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
 gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++           ++    + E    + +    D+  ++  L    G   
Sbjct: 5   ILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMSGADF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
             + R       +P+I ++        +   +SG DD + KP   RE+    +     R 
Sbjct: 65  ARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +++  E G +R+ S             L   E R+L YLM +  +  +++Q+   ++
Sbjct: 125 PEAADDVVEIGGLRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VE+  V+ HI +LRK L N      V + R  GY +
Sbjct: 185 GDH-VFVEDRTVDVHIRRLRKALENVDKDGLVQTVRGSGYRL 225


>gi|325002114|ref|ZP_08123226.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +            + DV  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLTIVLRGEGFETAVVSDGTRALPAVRDMQPDVVLLDLML--PGMNGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR++  
Sbjct: 64  VCRAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARVRRIETE 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I +          G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 PAEQLSIGEIDIDVPAHQVTRGGRPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 221


>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 234

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +    + +    +       +  ++      G   L
Sbjct: 6   ILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIM--MPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ R IR  + +P+I +S   +    +    +G DD V KP +                +
Sbjct: 64  EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +      L+ + N      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSSALQSAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 223

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  +   ++ E    +  +   D+  I+           E
Sbjct: 6   LVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVM--MPVMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    VP+I ++     +  L  F  G DD V KP    E++ARV A+ +R  V+
Sbjct: 64  LVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYSVN 123

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +    D  +   Q E+  LP ++  ++  L  +  +  ++ Q+   I+G+ 
Sbjct: 124 TSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D    +  V+ HI ++R+ L +  GF  V + R LGY ++ 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKVEV 222


>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 266

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +         G  +                  D+  ++  L   G    E
Sbjct: 43  LVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRML--PGIDGSE 100

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+   VP+I ++   S    +   ++G DD ++KP   RE++ RV +I RR    
Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160

Query: 123 NNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                T       + +        GE   L  RE  +L +L+ + G+  ++ Q+  +++G
Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              E  + + V   + +LR+K+  +      + +   +GY +++
Sbjct: 221 W--EFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLNF 262


>gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 239

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +    +           +  +  ++  +    G + 
Sbjct: 20  ILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMPEMDGIEA 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R I   S+  +  ++      + +  FD+G DD + KPI  + +L++V      ++
Sbjct: 80  CEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVKALLRRFK 139

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   + G I +  +     V      LPR+E  +L  L +  GK   + +I   +
Sbjct: 140 SPSKVDTVVKIGNIIINREEYQVTVGKTELVLPRKEFELLSLLASKPGKVFKREEILDTV 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V    ++ HI KLR+K+ +    D   + + +GY I
Sbjct: 200 WGN-EVVVGGRTIDVHIRKLREKIGD----DRFKTVKGVGYKI 237


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   +          +G  ++  +  +  +        D+  ++  L   G   +
Sbjct: 5   IVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWML--PGLSGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P++ ++        +     G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRR 122

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K     ++   G I +  +       G    L   E +++E+ M + G+  ++ Q+   
Sbjct: 123 SKPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY++D 
Sbjct: 183 VWGR-DIYVDERTVDVHVGRLRKAINRGRERDPIRTVRGAGYALDE 227


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      E      +    D+  ++  L       LE
Sbjct: 1   MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLML--PKMDGLE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   S
Sbjct: 59  VAREIRKTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASS 118

Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            +  D       GE   L  RE  +L YL  + G+ + +  +  
Sbjct: 119 VKEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 179 TVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYL 223


>gi|239944236|ref|ZP_04696173.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990692|ref|ZP_04711356.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447708|ref|ZP_06587098.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350655|gb|EFE77559.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 245

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +     A    +G ++E  +       L S     +  ++  L    GE V
Sbjct: 4   ILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGEDV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P+I ++   + +  +     G DD + KP    E++ARV A+ RR +
Sbjct: 64  CKQLRR--QGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRRYR 121

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N           G + + +  R   ++G++  L   E ++L  +  + G+   + ++ 
Sbjct: 122 SNNGVLAEVMEFADGDLVIDTLRRQATLRGQLVDLTATEFKLLAAMAKSPGRVFTRGELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               G      +   ++SHI  LR+KL  K      + +   +GY  
Sbjct: 182 EIAQGALPTGFD-RTIDSHIKNLRQKLEPKPDEPQLIRTVYGVGYKF 227


>gi|229917896|ref|YP_002886542.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469325|gb|ACQ71097.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   +++       ++G +L    + +    L S+   D+  ++          
Sbjct: 6   VICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLM--MPVMGG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E    IR    +P++ ++   S    +     G DD + KP +  E+  RV ++ RR +
Sbjct: 64  IEACIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRYR 123

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +             + +    R       +  L  +E  IL Y M +  + +   QI
Sbjct: 124 DYGSDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + A++G     V+ N V  HI+K+R+KL +       + +   +GY +
Sbjct: 184 YEAVWGEAAFEVD-NTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230


>gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       ++  S++     +  + L   A  D+  ++  L    +  L
Sbjct: 3   ILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILL--PKKDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
           E+ R +R    Q P++ ++   S+   +   D G DD + KP   +  +    A + R+ 
Sbjct: 61  EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R E G + +       E +G+   L  RE  +LEY M + G+ V +  I   I+ 
Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ ++ +LR+K+        + + R +GY +
Sbjct: 180 NYDFECSSNVIDVYVRRLRRKIDAPFTTKLLATIRGVGYCL 220


>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 237

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   +++        +G  +    +      +    + D+  ++       +   
Sbjct: 5   IVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLM--MPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
           EL   IR +S VP+I ++     +  +     G DD V KP   RE++ RV  I      
Sbjct: 63  ELCEEIRQYSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 116 --YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +  +  +   E   +++    R   V G    L  +E  +L  +  +  +  +++Q+
Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              I+  F+     N V   +S+LR+KL         + +   +GY  +
Sbjct: 183 LEQIW-NFEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFE 230


>gi|297562675|ref|YP_003681649.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847123|gb|ADH69143.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         + D+  ++  L   G   ++
Sbjct: 6   LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLML--PGADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD + KP   +E++ARV    RR +  
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTIDIVLGLESGADDYIVKPFKPKELVARVRVRLRRTEEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G I +   G      GE   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEVLQIGDITIDVAGHAVRRDGEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEVVVTVRGVGYK 221


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D       ++G ++   ++ E    +       +  ++      G   L
Sbjct: 5   ILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIM--MPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R +R    +P++ +S        +    +G DD V KP +H E+         R   
Sbjct: 63  EVCRRVREKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +++  +N      + +        +      L  RE  IL  L +NRG+  +  +IF
Sbjct: 123 LNTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR KL     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIEK 230


>gi|210617586|ref|ZP_03291642.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787]
 gi|210149251|gb|EEA80260.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G+   GF   +      +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDGNIRELVVYTLNTTGMEARGFEDGKSFMEALAFETPELILLDIML--PGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           L L + ++      ++P+I ++   +    +   D G DD V KP    E+    +    
Sbjct: 59  LSLLKKLKNSAKTKEIPVIMVTAKGAEYDKVVGLDGGADDYVTKPFGMMELVSRIKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +    +   G + +        V G+   L  +E  +L  L+ N    + + ++  
Sbjct: 119 RTKKEKEEGQYSVGNLSMDLKKHVVFVDGKQVTLTLKEFELLGRLVQNHNIVLTRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
            ++G +D   E   V+ H+  LR+KL +    D + + R +GY + + N
Sbjct: 179 EVWG-YDFDGETRTVDVHVRTLRQKLGSAG--DMIQTVRGVGYRLGEIN 224


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   +  D++ ++  L   G   L
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWML--PGLSGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R +RA    +P+I ++    +   +   D+G DD V KP    E+LAR+ A   R  
Sbjct: 63  EICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +  +   + +    R+         L  +E  +LEYL++   +   + QI   ++G
Sbjct: 123 ETDEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        V + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENNEKRLVHTVRGVGYAL 222


>gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
 gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
          Length = 239

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALEMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235


>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|300947806|ref|ZP_07161962.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300452626|gb|EFK16246.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|297160788|gb|ADI10500.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +       +      D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLATALARGLAAEGFAVDVAHDGVSGLHMAQEQDYDLIVLDIML--PGLNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ ++         +  D+G DD + KP  +  + AR+ A+ RR  
Sbjct: 61  RVCAQLRAVGDETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLQARIRALLRRRT 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +        V    R  E  G    L  +E  +LE L  + G+ V+K  + + ++ 
Sbjct: 121 RAGVQVLKIGDLTVDPGARRVERAGAEVTLTAKEFAVLEQLALHAGRVVSKADVLAHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE ++S LR+KL    G   + + R  GY ++
Sbjct: 181 -FAYDGDPNIVEVYVSALRRKLDLPFGRRSITTVRGAGYRLE 221


>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
 gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +      +    L + +   +  +   ++  G   +
Sbjct: 5   ILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLVNDS---LDLVILDIMMPGISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  +
Sbjct: 62  ETCQHIRKTSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            V  +  +   + +   L   E RIL+ LM+ R K  +   I+
Sbjct: 122 YQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228


>gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae]
          Length = 229

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI  LR  L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRPLRNALEDAGHDKLIQTVRGAGYRF 225


>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
 gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A  ++        +G  +      E    L      D+  ++          LE
Sbjct: 10  LLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWM--MPKVSGLE 67

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +        VP++ +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 68  VCRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRA 127

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + ++     E G IR+  +        +V  L   E R+L   M   G+  ++ Q+   I
Sbjct: 128 RPASVGVVLEHGDIRLDGETHRVYRADKVLKLGPIEFRLLATFMERPGRVFSREQLLDRI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  VE   V+ H+ +LR+ L    G DP+ + R  GY++
Sbjct: 188 WGR-DINVETRTVDVHVGRLRRALCVFGGDDPLRTVRGAGYAL 229


>gi|226305655|ref|YP_002765615.1| two-component response regulator MtrA [Rhodococcus erythropolis
           PR4]
 gi|229489658|ref|ZP_04383521.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184772|dbj|BAH32876.1| two-component response regulator MtrA [Rhodococcus erythropolis
           PR4]
 gi|229323755|gb|EEN89513.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTLALAAVRETRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR + 
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +           E   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGSEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221


>gi|226314437|ref|YP_002774333.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097387|dbj|BAH45829.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +G       +G  +      +         R D+  ++  L        E
Sbjct: 4   LVVEDDKTIAEGLHYSLSSEGYEVVLCEGKQTALEAIKQQRFDLYLLDLTL--PDGNGYE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           +   ++ +   P+I ++        +   D G DD + KP   RE    +      Y++ 
Sbjct: 62  ICEYVKENQDAPVIFLTACDDEINVVRGLDMGADDYITKPFRIRELISRMKSSLRHYQKE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++   G + V +         E   L   E R+L   + NRG+ +++ Q+   I+ 
Sbjct: 122 PNLSDKVRVGNVVVNTKLAKVYKGTEEVMLTALEYRLLLAFINNRGQVLSRNQLLEGIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           L    + +N +  +I +LR+KL +       +++ R LGY +
Sbjct: 182 LDGNFINDNTLSVYIKRLREKLEDDSQNPKVIETVRGLGYRM 223


>gi|62180703|ref|YP_217120.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583379|ref|YP_002637177.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128336|gb|AAX66039.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467906|gb|ACN45736.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322715177|gb|EFZ06748.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKLLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S   D+  ++  L     +  
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQML--PELEGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQ P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR   
Sbjct: 62  EVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTP 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +               +  D       G+   L  RE  +L +L  + G+ + +  +
Sbjct: 122 VVGQNVMDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + ++R+K+         + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYL 228


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 14  ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 72  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 132 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 191

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 192 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 243


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +           D+  ++  L        
Sbjct: 9   ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLML--PRVPGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R+IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV      ++ 
Sbjct: 67  RVCRVIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V  +   L   E ++L  L    G+  ++ ++   +
Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 187 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 230


>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G ++E  N  +    L  +   D+  ++      G    
Sbjct: 5   ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVM--MPGLDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++   IR +  +P++ ++    ++  +   D G DD + KP    E    +  +     +
Sbjct: 63  QVCGQIREYYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRRSGK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + + +  R+            RE  +L+  M N    + K  I   I+
Sbjct: 123 TEAQPAILSYADLSMDTGTREVFRNKRQLNPTAREYELLKLFMENPRLVLNKELIMERIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E NV+E +I  LR KL        + + R  GY +
Sbjct: 183 G-YDYQGESNVLEVYIVMLRNKLEACGEKRLIHTVRGAGYVL 223


>gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++ R  ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +    +     + +    R   + GE   L R E  IL  + A + +     +I
Sbjct: 134 FNQNAAQEIEKKINIRGLEIDEVSRTVMLYGETINLTRTEYDILYLMAAVKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S++          + ++ R D   ++          L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVM--MPKLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTT 122

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +        G + +    R+         L R E  +LE LMAN  + + +++I   
Sbjct: 123 IDESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEAEGELRLIHTVRGVGYVL 225


>gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 232

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G   E   +         +   D+  ++  L   G+   
Sbjct: 4   ILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVML--PGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ + IR   ++P++ ++        +     G DD + KP            H     R
Sbjct: 62  EICQEIRKVKEIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + ++ +    S N    G + +  D R   +      L  +E  +L +L +N     +K 
Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+G  +   + + V  HI+++R+K+  +      +++    GY  
Sbjct: 182 TLLDRIWGE-ESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGYRF 230


>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 228

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E  N         +  + D+  ++  L       +
Sbjct: 6   ILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVML--PSLNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R  S+ P+I ++    +   +   D G DD + KP    E    +  V    + 
Sbjct: 64  EVLRRLRQVSETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G +++  +        E   L ++E  +L YL+ N+   + + +I   ++
Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NVV+ +I  LR K+ ++     + + R +GY I
Sbjct: 184 G-YDYYGDTNVVDVYIRYLRSKIDDRFNTKLIHTVRGVGYII 224


>gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
 gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
          Length = 229

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G + E          + +    D+  ++          +
Sbjct: 48  ILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIM--MPFMDGM 105

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R    + P+I ++        L   + G DD V KP   RE++ARV A+  R  
Sbjct: 106 TCLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTM 165

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++  +     + +     +V G+  PL  +E  +L +L++N+G  +++ +I   
Sbjct: 166 PRTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQK 225

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++HI  LR  L      + + +   +GY  D
Sbjct: 226 VW-NYDYYGEDRTVDTHIKMLRGHLG--PCRNYIVTVWGIGYKFD 267


>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
           19977]
 gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
          Length = 225

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G      +            R D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++R+ S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DVCRVLRSDSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +         +GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D +   +    +   +G  +    +          A  D+  ++  L   G    E
Sbjct: 5   LVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLML--PGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I +S   +    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQTSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVAE 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      E G +R+  D     V G    LP +E  +LE+ + N G+ + + Q+   ++
Sbjct: 123 DDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  D
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEVDPANPVTLTTVRGLGYKFD 225


>gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++ D   ++D       ++G  +    +      L  S   ++  +++ L       +
Sbjct: 4   ILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLIRSISFELVILDSML--PQMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S  P+I +S        +     G DD + KP +  E+LARV A  +R  +
Sbjct: 62  NACIKIREISNTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQRQSL 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    I               ++     L   E  ILE L ++ G+  +  +I+ +
Sbjct: 122 IGKEEFNSLIFFKDLVIDKTKHSVTLKENNISLTPLEFSILELLASHPGQVFSFDKIYES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++        +N V  HI  LR+KL         + +   +GY ID
Sbjct: 182 VWEDP-IGYSDNTVMVHIRNLREKLEKSPRDPQYIKTVWGVGYKID 226


>gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 249

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+D        +G  +              +A  D+  ++  L   G   L+
Sbjct: 13  LVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIML--PGLDGLQ 70

Query: 63  LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           +   +R    S VP++ ++        +    SG DD V KP   +E++ R       ++
Sbjct: 71  ICERLRREDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRRSV 130

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G +++    R      +   L  RE  +L + + + G+  ++ ++ +
Sbjct: 131 IEPALPVAEVVREGDLQLNPVSRVAVRGRQPLSLTSREFDLLMFFLRHPGRVFSRDELLN 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++G      + + V  H+ +LR K+ +       + +    GY  D
Sbjct: 191 RVWGWD--FGDLSTVTVHVKRLRHKIEDIPADPRRIVTVYGRGYRWD 235


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +   ++        +    D+  ++  L        E
Sbjct: 9   LVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVML--PDIDGFE 66

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +       P++ ++   + +  +     G DD V KP    E++ARV AI RR + 
Sbjct: 67  VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N         +  D  +    G +  L   E R+L YL+AN  K + + Q+   ++  
Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWD- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   +  V+E++IS LRKK+ +  G   + + R +GY++
Sbjct: 186 YDFGGDSGVLETYISYLRKKI-DAEGPPLIHTVRGVGYTL 224


>gi|294635401|ref|ZP_06713893.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
 gi|291091224|gb|EFE23785.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I             +  +       +   D+  ++  L   G   L
Sbjct: 18  ILIVEDEPKLGQLLIDYLLAASYRPHWLSRGDEVLPHLQNHLYDLILLDLML--PGVDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR  +
Sbjct: 76  TLCREIRRSSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGL 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                   P+ +         + +   L + E R+L+ L    G  +++ Q+ + +Y  +
Sbjct: 136 QEGGEVRTPLLIDERHFQARYRQQTLDLTQAEFRLLKTLATQPGCVLSREQLLNHLYDDY 195

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL   + G   + S   +GY  +
Sbjct: 196 -RVVTDRTVDSHIKNLRRKLEAIEQGEPLIRSVYGVGYRWE 235


>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         D  ++   ++ E   ++ S+ + D+  ++          +
Sbjct: 5   ILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIM--MPVMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +   +R  S VP+I ++        L  +D G DD + KP   + ++A+V A     R 
Sbjct: 63  TMLEKLREVSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRSRE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++  E   + +     +  V G+   L  +E  +L YL+ N G  +++  I   ++G
Sbjct: 123 DIDSSSQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D   +   V++++ +LR+KL ++     + + R  GY  +
Sbjct: 183 L-DYYGDIRTVDTNVKRLREKLLDRSN--LIVTVRGSGYKFE 221


>gi|16765461|ref|NP_461076.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56412969|ref|YP_150044.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613184|ref|YP_001587149.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991049|ref|ZP_02572148.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229457|ref|ZP_02654515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168236293|ref|ZP_02661351.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242208|ref|ZP_02667140.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451571|ref|YP_002046183.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472565|ref|ZP_03078549.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737843|ref|YP_002115222.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250857|ref|YP_002147092.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264591|ref|ZP_03164665.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361899|ref|YP_002141535.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242249|ref|YP_002216218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389136|ref|ZP_03215748.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929186|ref|ZP_03220329.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353273|ref|YP_002227074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857567|ref|YP_002244218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912561|ref|ZP_04656398.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16420665|gb|AAL21035.1| response regulator in two-component regulatory system with BaeS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56127226|gb|AAV76732.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161362548|gb|ABX66316.1| hypothetical protein SPAB_00893 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409875|gb|ACF70094.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458929|gb|EDX47768.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194713345|gb|ACF92566.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093375|emb|CAR58825.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214560|gb|ACH51957.1| DNA-binding response regulator BaeR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242846|gb|EDY25466.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290555|gb|EDY29910.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936765|gb|ACH74098.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199606234|gb|EDZ04779.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321730|gb|EDZ06929.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273054|emb|CAR38003.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330587|gb|EDZ17351.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335782|gb|EDZ22546.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338415|gb|EDZ25179.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206709370|emb|CAR33710.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261247346|emb|CBG25171.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994189|gb|ACY89074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158692|emb|CBW18204.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913123|dbj|BAJ37097.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224781|gb|EFX49844.1| Response regulator BaeR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615161|gb|EFY12083.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617752|gb|EFY14648.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624654|gb|EFY21485.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626895|gb|EFY23691.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634081|gb|EFY30817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635728|gb|EFY32438.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640267|gb|EFY36930.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646315|gb|EFY42828.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649408|gb|EFY45844.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656528|gb|EFY52817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661504|gb|EFY57728.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665608|gb|EFY61792.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667132|gb|EFY63299.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671138|gb|EFY67266.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675221|gb|EFY71298.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680830|gb|EFY76865.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687005|gb|EFY82982.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323130456|gb|ADX17886.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192769|gb|EFZ77996.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198799|gb|EFZ83898.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204931|gb|EFZ89922.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208234|gb|EFZ93178.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210956|gb|EFZ95817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215741|gb|EGA00484.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223394|gb|EGA07726.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227221|gb|EGA11392.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231186|gb|EGA15301.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233621|gb|EGA17713.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237691|gb|EGA21751.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245674|gb|EGA29668.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247751|gb|EGA31693.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252967|gb|EGA36800.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256769|gb|EGA40494.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259475|gb|EGA43110.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323268258|gb|EGA51733.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271952|gb|EGA55368.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623967|gb|EGE30312.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628362|gb|EGE34705.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989065|gb|AEF08048.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +   +   +       L    +  +  ++  L       L
Sbjct: 5   ILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWML--PSIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ RI+RA   +P+I ++   +    L   + G DD + KP   RE++ARV  + RR   
Sbjct: 63  DVCRILRAECDIPIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRELVARVRVVLRRASQ 122

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    +R     V  D  +  +   V  L  +E ++LE L    G+  ++ ++ + 
Sbjct: 123 QKEDDRLPALRLGDLVVDFDAHEARLHNTVVRLTPKEFKLLETLAREPGRAFSRAELVTR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G+ D    +  ++ H+  LRKK+         + +   +GY +
Sbjct: 183 VFGI-DYEGFDRTIDVHLMNLRKKIEPFPDQPIYLHTVYGVGYKL 226


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         S    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV        
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   E G +R+ +  R   +  +   L  +E  +LE L+   G+ V+K +I   +
Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  F    + N+VE +IS LR+KL    G   + + R  GY ++
Sbjct: 181 WD-FAYDGDPNIVEVYISTLRRKL----GPTLIKTVRGAGYRLE 219


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      +    + +    D+  ++  L       +E
Sbjct: 5   LVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQML--PEVDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----------LARV 112
           + R IR+ S VP+I ++   S    +   + G DD V KP  +RE+             V
Sbjct: 63  VLRQIRSKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSV 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S      G + +          G    L  RE ++L YL  + G+ + +  
Sbjct: 123 SQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++        +     +  ++  L   G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVML--PGLSGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   Q  P+I ++   S+   +   D G +D V KP    E+LAR+ A  R+  
Sbjct: 64  EVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  T             R+     +   L  RE  +L Y++ +  + + + QI S+
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226


>gi|229122769|ref|ZP_04251978.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228660633|gb|EEL16264.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLQYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
 gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
          Length = 245

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
 gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G                     D+  ++  L   G    E
Sbjct: 5   LIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLML--PGMLGTE 62

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIY 116
           + + IR   +   +P+I ++        +  F+ G DD V KP         +  V    
Sbjct: 63  VCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLRRS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +    + GPI +  +     V G        E ++L  L    G+  ++  +   
Sbjct: 123 KTRPAAATAMQVGPIDIDVERHCVLVNGGEINFTGTEFKLLHTLAQRLGRVQSRDVLLRD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G ++   +   V++HI++LR KL      D + + R  GY ++ 
Sbjct: 183 VWG-YNFVDDSRTVDTHITRLRTKLGEAG--DLIKTVRGFGYKLEV 225


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    L      D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWML--PKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A + R  
Sbjct: 61  SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G              L      D+  ++  L   G+  L
Sbjct: 4   ILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGL--PGQDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R   +  P+I ++    ++  +  F+ G DD + KP    E+L RV A  R   
Sbjct: 62  QVLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNY 121

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               R E   ++  +       R  +V      L  RE  + E    + G+ +++ Q+  
Sbjct: 122 GVPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D     N+V+ ++  LRKKL N    + +++ R +GY +
Sbjct: 182 RVWG-YDYDPGSNIVDVYVGYLRKKLGN----ELIETVRGMGYRL 221


>gi|296268755|ref|YP_003651387.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091542|gb|ADG87494.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G         +         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDAALAEMLGIVLRGEGFEPSFVYDGDKALDAFREIRPDLVLLDLML--PGADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRRIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIIKPFKPKELIARIRARLRRTEEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G I +   G   +   +   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 TPEILQIGDITIDVAGHSVKRGDQTINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN              +   + +  +     + G+   L   E  IL YL  NRGK ++
Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             ++F  I+G        N V +HI +LR+KL         + +   +GY+I+ 
Sbjct: 183 SEELFENIWGEKFLD-NNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235


>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    L      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEKS--KHITTVVRTGYKFEGN 228


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L      D   ++  L       +E
Sbjct: 6   LLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIML--PQLDGIE 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + + +RA  S+ P++ +S        +   + G DD V KP   RE              
Sbjct: 64  VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +          +R++ +  +     E+ PL  +E  +L YLM +    + + +
Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 LLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 231


>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +           D++ ++  L   G   L
Sbjct: 5   ILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIML--PGASGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++   S    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  SICQKIRDKYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   E     +         +  +  +  +   L   E  IL  L  N+G  V+  QIF
Sbjct: 123 YSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             I+G        N +  HI  LR+K+         + +   +GY I+ 
Sbjct: 183 HEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKIEK 231


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +  +    +              D+  ++  L   G   +
Sbjct: 18  ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLML--PGLDGV 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120
           E+ R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E +      + R   
Sbjct: 76  EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G   +    +  L   E  +L  L  +  K   + ++ S ++G 
Sbjct: 136 GAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWG- 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 195 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYR 234


>gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++     +  ++G ++    +      +  +    +  ++          +
Sbjct: 5   ILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVM--MPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR------VAAI 115
           E  + IR     P+I +S   +L      F   +DD V+KP    E+  R          
Sbjct: 63  EFLKKIRPQFDTPVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKRYRK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   + +  + G + +  D       GE   L  RE ++L  LM N G  +++ Q+  
Sbjct: 123 VEKSSAAQDIVKIGELEINFDSYQLFAGGEEIDLTPREFKLLGILMRNAGMVLSREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +    +   + NV+   + +LR+K+  +      + +   +GY  
Sbjct: 183 -LADDREYFGDLNVINVFVRRLRQKIEKDPANPKYLQTVWGVGYKF 227


>gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        DG   +    S E      +    D+  ++  L   G   
Sbjct: 6   ILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLML--PGMDG 63

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R ++     S +P+I ++        +   + G DD + KP   + ++AR+ ++ R
Sbjct: 64  LAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVLR 123

Query: 118 RLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R+K S+        + GP+ +    R+  + G    L   E   L  L    G    + Q
Sbjct: 124 RVKPSDAEAAAGTIKRGPLCMNRGTREALLDGRPMTLTFSEFETLYLLARRPGWVYTRGQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I + + G  D  V E  ++  +  +R+KL      D +++ R +GY  
Sbjct: 184 IVNEVKG-DDYPVTERAIDVQMVSIRRKLGTHG--DLIETVRGVGYRF 228


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           L    R D   ++  L       LE
Sbjct: 162 LVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIML--PDMDGLE 219

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S   P++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 279

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G + +  + R+ +  G+   L   E  +L + M N  + ++K QI   
Sbjct: 280 TTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILDR 339

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 340 VW-NYDFGGQANVVELYVSYLRKKI-DAGRPPMIHTMRGAGYVL 381


>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
 gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
          Length = 237

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + +S   D+  ++  L     +  
Sbjct: 4   ILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQML--PEIEGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR++S  P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 121

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      S    +   + +  D       G    L  RE  +L YL    G+ + +
Sbjct: 122 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             + + ++G FD   +   V+  + +LR+K+ +     + + +KR +GY
Sbjct: 182 EALLTEVWG-FDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGY 229


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E                 ++  ++  L       LE
Sbjct: 7   LIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLML--PVMDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++   ++   ++  D+G DD + KP    E+LARV A  RR+  +
Sbjct: 65  VARRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 124

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  +GR+    G    L  +E  +LE L  + GK  ++ +I   ++   
Sbjct: 125 ITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW--P 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ +I  LRKKL        + + R +GY +
Sbjct: 183 GYQGGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +      +    L      D   ++  L       +
Sbjct: 4   ILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLML--PVMDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
            + + +R      P++ ++        +   + G DD + KP   RE+      + R + 
Sbjct: 62  TVLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R      +  E   I +  + +     G+   L  RE  +L Y     G+ + +  I 
Sbjct: 122 TERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +A++G ++   E  +V+ HIS LR+K+  N      + + R  GY
Sbjct: 182 TAVWG-YEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGY 225


>gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKNILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 232

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + +     ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIKKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++I+D   + +        +G                   + D+  ++  L    G  V 
Sbjct: 5   LIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFGTDVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           +  +     + +P++ ++        +  F+ G DD V KP   RE++ RV         
Sbjct: 65  KTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRKAP 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N    G IR+ ++  +  V G+       E ++L  L+   G+  ++  +   ++
Sbjct: 125 EPAATNIINVGGIRIDTERHEVTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRDVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V++HI++LR K+ N    D + + R  GY ++ 
Sbjct: 185 G-YNFVEDTRTVDTHITRLRTKMGNAG--DMIKTVRGFGYKLEV 225


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++      G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++           +    +  +  ++      G   L
Sbjct: 3   ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVM--MPGMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R      P++ ++   ++   +   D+G DD + KP             +    
Sbjct: 61  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +   +       G + +  + RD    G    L R E  +L+ L+ N+ K + + Q
Sbjct: 121 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 ILEEVWGC-DFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 227


>gi|87124761|ref|ZP_01080609.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86167640|gb|EAQ68899.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 249

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            +L++D   +++        +G  +                ++   D+  ++  L   G 
Sbjct: 22  LLLVEDDESIRETVREALKAEGFDVLACGDGAEALAALTDAAAEPVDLVVLDLML--PGL 79

Query: 59  KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILAR 111
             L+L R +R +    P++ IS   S    +   + G DD + KP            L R
Sbjct: 80  GGLDLCRQLRKNDNSTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLR 139

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +      +          + +F++        +   L  +E +ILE  + N  +  ++ 
Sbjct: 140 RSQQPSSSEAPPQVYRHENLCLFAEECRVSRDDKDLSLSPKEYKILELFIKNPRRVWSRD 199

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           Q+   I+G+ D   +   V+ HI  LR+K+ +       + + R  GY  
Sbjct: 200 QLLERIWGI-DFVGDTKTVDVHIRWLREKIEDEPSAPKHIRTVRGFGYRF 248


>gi|16130019|ref|NP_416583.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|26248453|ref|NP_754493.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           CFT073]
 gi|74312603|ref|YP_311022.1| DNA-binding transcriptional regulator BaeR [Shigella sonnei Ss046]
 gi|82543453|ref|YP_407400.1| DNA-binding transcriptional regulator BaeR [Shigella boydii Sb227]
 gi|82777414|ref|YP_403763.1| DNA-binding transcriptional regulator BaeR [Shigella dysenteriae
           Sd197]
 gi|89108899|ref|AP_002679.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. W3110]
 gi|91211367|ref|YP_541353.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UTI89]
 gi|110642289|ref|YP_670019.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 536]
 gi|117624275|ref|YP_853188.1| DNA-binding transcriptional regulator BaeR [Escherichia coli APEC
           O1]
 gi|157161570|ref|YP_001458888.1| DNA-binding transcriptional regulator BaeR [Escherichia coli HS]
 gi|170081709|ref|YP_001731029.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170680336|ref|YP_001743060.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           SMS-3-5]
 gi|188492527|ref|ZP_02999797.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|191169545|ref|ZP_03031273.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|191169921|ref|ZP_03031475.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|193062926|ref|ZP_03044019.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194428867|ref|ZP_03061401.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215487302|ref|YP_002329733.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218549496|ref|YP_002383287.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ATCC 35469]
 gi|218558959|ref|YP_002391872.1| DNA-binding transcriptional regulator BaeR [Escherichia coli S88]
 gi|218690137|ref|YP_002398349.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ED1a]
 gi|218705614|ref|YP_002413133.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           UMN026]
 gi|227887135|ref|ZP_04004940.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|237704536|ref|ZP_04535017.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|238901269|ref|YP_002927065.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|253772987|ref|YP_003035818.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162070|ref|YP_003045178.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B str.
           REL606]
 gi|256022229|ref|ZP_05436094.1| DNA-binding transcriptional regulator BaeR [Escherichia sp.
           4_1_40B]
 gi|260844689|ref|YP_003222467.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|291283320|ref|YP_003500138.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|293405554|ref|ZP_06649546.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|293410442|ref|ZP_06654018.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|293415367|ref|ZP_06658010.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|293446434|ref|ZP_06662856.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|297520052|ref|ZP_06938438.1| DNA-binding transcriptional regulator BaeR [Escherichia coli OP50]
 gi|298381238|ref|ZP_06990837.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|300897072|ref|ZP_07115538.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300930968|ref|ZP_07146328.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300955102|ref|ZP_07167506.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300978917|ref|ZP_07174430.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300981663|ref|ZP_07175649.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301021219|ref|ZP_07185252.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301026387|ref|ZP_07189832.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|306814798|ref|ZP_07448960.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307138737|ref|ZP_07498093.1| DNA-binding transcriptional regulator BaeR [Escherichia coli H736]
 gi|309787850|ref|ZP_07682460.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|312967314|ref|ZP_07781530.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312973671|ref|ZP_07787843.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|331642699|ref|ZP_08343834.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331647732|ref|ZP_08348824.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331658159|ref|ZP_08359121.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331663575|ref|ZP_08364485.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|59799175|sp|P69228|BAER_ECOLI RecName: Full=Transcriptional regulatory protein BaeR
 gi|59799176|sp|P69229|BAER_ECOL6 RecName: Full=Transcriptional regulatory protein BaeR
 gi|26108858|gb|AAN81061.1|AE016763_20 Transcriptional Regulatory protein baeR [Escherichia coli CFT073]
 gi|216533|dbj|BAA03141.1| BaeR [Escherichia coli]
 gi|1736788|dbj|BAA15935.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K12 substr. W3110]
 gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|73856080|gb|AAZ88787.1| transcriptional response regulatory protein [Shigella sonnei Ss046]
 gi|81241562|gb|ABB62272.1| transcriptional response regulatory protein [Shigella dysenteriae
           Sd197]
 gi|81244864|gb|ABB65572.1| transcriptional response regulatory protein [Shigella boydii Sb227]
 gi|91072941|gb|ABE07822.1| transcriptional response regulatory protein BaeR [Escherichia coli
           UTI89]
 gi|110343881|gb|ABG70118.1| transcriptional regulatory protein BaeR [Escherichia coli 536]
 gi|115513399|gb|ABJ01474.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli APEC O1]
 gi|157067250|gb|ABV06505.1| DNA-binding response regulator BaeR [Escherichia coli HS]
 gi|169889544|gb|ACB03251.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170518054|gb|ACB16232.1| DNA-binding response regulator BaeR [Escherichia coli SMS-3-5]
 gi|188487726|gb|EDU62829.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|190900420|gb|EDV60241.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|190909437|gb|EDV69022.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|192931569|gb|EDV84170.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194413035|gb|EDX29323.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215265374|emb|CAS09770.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218357037|emb|CAQ89669.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia fergusonii ATCC 35469]
 gi|218365728|emb|CAR03464.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli S88]
 gi|218427701|emb|CAR08608.2| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli ED1a]
 gi|218432711|emb|CAR13605.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli UMN026]
 gi|222033844|emb|CAP76585.1| Transcriptional regulatory protein baeR [Escherichia coli LF82]
 gi|226237431|dbj|BAH46953.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7]
 gi|226900902|gb|EEH87161.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|227835485|gb|EEJ45951.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|238860855|gb|ACR62853.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|242377732|emb|CAQ32493.1| BaeR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253324031|gb|ACT28633.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973971|gb|ACT39642.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli B str. REL606]
 gi|253978165|gb|ACT43835.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BL21(DE3)]
 gi|257759836|dbj|BAI31333.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|260448820|gb|ACX39242.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|281179177|dbj|BAI55507.1| two-component response regulator [Escherichia coli SE15]
 gi|284922073|emb|CBG35152.1| two-component response regulator [Escherichia coli 042]
 gi|290763193|gb|ADD57154.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|291323264|gb|EFE62692.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|291427762|gb|EFF00789.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|291433015|gb|EFF05994.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|291470910|gb|EFF13394.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|294494062|gb|ADE92818.1| DNA-binding response regulator BaeR [Escherichia coli IHE3034]
 gi|298278680|gb|EFI20194.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|299879705|gb|EFI87916.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300307464|gb|EFJ61984.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300317945|gb|EFJ67729.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300359122|gb|EFJ74992.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300398228|gb|EFJ81766.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300409550|gb|EFJ93088.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300461194|gb|EFK24687.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|305852192|gb|EFM52644.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307554152|gb|ADN46927.1| transcriptional regulatory protein BaeR [Escherichia coli ABU
           83972]
 gi|307626375|gb|ADN70679.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UM146]
 gi|308924249|gb|EFP69746.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|309702403|emb|CBJ01725.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310332266|gb|EFP99501.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|312288122|gb|EFR16026.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312946701|gb|ADR27528.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315136713|dbj|BAJ43872.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli DH1]
 gi|315285690|gb|EFU45130.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315294400|gb|EFU53748.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315299488|gb|EFU58739.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320172686|gb|EFW47921.1| Response regulator BaeR [Shigella dysenteriae CDC 74-1112]
 gi|320183719|gb|EFW58557.1| Response regulator BaeR [Shigella flexneri CDC 796-83]
 gi|320195942|gb|EFW70566.1| Response regulator BaeR [Escherichia coli WV_060327]
 gi|320657502|gb|EFX25300.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663318|gb|EFX30623.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323161803|gb|EFZ47682.1| transcriptional regulatory protein baeR [Escherichia coli E128010]
 gi|323168797|gb|EFZ54477.1| transcriptional regulatory protein baeR [Shigella sonnei 53G]
 gi|323936884|gb|EGB33168.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940850|gb|EGB37038.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323948460|gb|EGB44441.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323951833|gb|EGB47707.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323956115|gb|EGB51867.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323961720|gb|EGB57323.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|324006443|gb|EGB75662.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013872|gb|EGB83091.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|330911916|gb|EGH40426.1| response regulator BaeR [Escherichia coli AA86]
 gi|331039497|gb|EGI11717.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331043456|gb|EGI15594.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331056407|gb|EGI28416.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331059374|gb|EGI31351.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|332097147|gb|EGJ02130.1| transcriptional regulatory protein baeR [Shigella boydii 3594-74]
 gi|332343861|gb|AEE57195.1| transcriptional regulatory protein BaeR [Escherichia coli UMNK88]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
 gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
          Length = 234

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE        L R   
Sbjct: 63  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKTGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 226


>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++         DG  +    S E    + +  +  V  ++  L   G    E
Sbjct: 8   LVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLML--PGIDGFE 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117
           + + IR     + +I ++        +   + G DD + KP +       I A +  I  
Sbjct: 66  VCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKIDN 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N         +  D +    +G    L   E  +++  M    K  ++ +I + +
Sbjct: 126 AKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNIV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G  +   +   V+ H+ ++R+K+ +       +++   +GY +
Sbjct: 186 WGK-NYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRL 228


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +++   A    +G +++     E   ++      DV  I+  L    G ++
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R      + P++ ++   S Q  ++    G DD + KP H  E+LARV A + R  
Sbjct: 63  IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|253579765|ref|ZP_04857033.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848764|gb|EES76726.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I      G    GF +             ++  ++  L G  G  
Sbjct: 1   MIYCVEDERNIRELLIYTLETTGFKARGFGNGNELMKALKEEIPELILLDIMLPGDDGYT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +LE  + + +   VP+I ++   +    +   + G DD + KP    E +ARV A     
Sbjct: 61  ILEQLKSMPSVKDVPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +       + +     +   + E   L R+E  +L+YL+ N+G  + + QI   +
Sbjct: 121 ARQNEDKELHYDELYLNVGRHEVRYREEKVDLTRKEFELLQYLLENKGLVMTRNQILCHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL        +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 220


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G                +    D+  ++  L   G    +
Sbjct: 5   LIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCRRLRQVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +  +     V G+   +P +E  +LEYL+ N G+ + + Q+   +
Sbjct: 123 DGSVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226


>gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +             + +  ++  ++      G+   
Sbjct: 7   ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  SQVP+I ++        +   + G DD + KP   RE++AR+ A+ RR + 
Sbjct: 65  SLCQQIRRKSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRAEF 124

Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                E    R                    G    L   +  +L   + + G+ + +  
Sbjct: 125 RQPEKEVVSGRKLKFAGWTLDTRTQLLTHEDGSGIDLTGSDFILLHLFLQHPGQVLDRDT 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I  A  G  +    E  ++  IS+LR+KL +   G   + + R  GY +
Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKGPRIIKTIRGSGYML 232


>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 237

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD     +         G  +      E       S   ++  ++  +    G +V
Sbjct: 15  ILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLEV 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            ++ R     S +P+I ++   +    +   + G DD V KP   RE    + R+    +
Sbjct: 75  CKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLRSGQ 134

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++      + +        V+G+   L   E ++L  L   RG+  ++ Q+   +
Sbjct: 135 TTGEKSDEIILKELSLNIPKHLALVKGKPVELTATEFKLLTVLAQRRGRVQSREQLLQDV 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D  ++   V++H+ +LR+KL        +D+ R +GY  
Sbjct: 195 W-EYDNLIDTRTVDTHMRRLREKLGA--AARYLDTVRGVGYRF 234


>gi|28211551|ref|NP_782495.1| regulatory component of sensory transduction system [Clostridium
           tetani E88]
 gi|28203992|gb|AAO36432.1| regulatory component of sensory transduction system [Clostridium
           tetani E88]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIARNLMLLLRSEGFTVTHAPTRSEAFAALAGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    VP+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKETQDVPVIFLTASGDEASVVTGLNMGADDYITKPFRSRELIARIGTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + V +     +  G    L   E R+L   ++N    + + ++   ++   
Sbjct: 122 SRSDFEIRGLHVDTASGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPASPQIILTVRGTGYRL 221


>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      +    + +    D+  ++  L       +E
Sbjct: 5   LVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQML--PEVDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----------LARV 112
           + R IR+ S VP+I ++   S    +   + G DD V KP  +RE+             V
Sbjct: 63  VLRQIRSKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSV 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S      G + +          G    L  RE  +L YL  + G+ + +  
Sbjct: 123 SQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +        +G   E          L  + R D+  ++  + G     
Sbjct: 5   LILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRATRPDLILLDLMVPGP--DG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           LE+ R +R  S VP+I ++        L   + G DD V KP   RE++ARV       +
Sbjct: 63  LEITRTLRKTSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRRAK 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +  R   G + V  +  +    G+  PL   + R+L  L    G+ V + ++ + +
Sbjct: 123 GRVRAPERYTVGRLEVDLEAFEARCAGQPLPLSPAQLRLLAALAREAGRAVPRAELLAQL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               D   +   V++H+  LR++L        +++ R +GY +
Sbjct: 183 ---GDGDADARTVDAHVKNLRRRLGPCGAQ--IETVRGVGYRL 220


>gi|298695623|gb|ADI98845.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323443678|gb|EGB01291.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L     +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 9   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 67  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224


>gi|255971801|ref|ZP_05422387.1| two-component system response regulator [Enterococcus faecalis T1]
 gi|256958081|ref|ZP_05562252.1| two-component system response regulator [Enterococcus faecalis DS5]
 gi|256963908|ref|ZP_05568079.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257079968|ref|ZP_05574329.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257417030|ref|ZP_05594024.1| two-component system response regulator [Enterococcus faecalis
           AR01/DG]
 gi|294779527|ref|ZP_06744922.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861078|ref|ZP_07107165.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
 gi|307268332|ref|ZP_07549713.1| regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307272098|ref|ZP_07553361.1| regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307276158|ref|ZP_07557289.1| regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|307286853|ref|ZP_07566935.1| regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|312951112|ref|ZP_07770017.1| regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|255962819|gb|EET95295.1| two-component system response regulator [Enterococcus faecalis T1]
 gi|256948577|gb|EEU65209.1| two-component system response regulator [Enterococcus faecalis DS5]
 gi|256954404|gb|EEU71036.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256987998|gb|EEU75300.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257158858|gb|EEU88818.1| two-component system response regulator [Enterococcus faecalis
           ARO1/DG]
 gi|294453406|gb|EFG21813.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295113733|emb|CBL32370.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850117|gb|EFK77867.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
 gi|306502068|gb|EFM71354.1| regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306507152|gb|EFM76291.1| regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306511214|gb|EFM80221.1| regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306515358|gb|EFM83892.1| regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310630888|gb|EFQ14171.1| regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|315036301|gb|EFT48233.1| regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315154148|gb|EFT98164.1| regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315158989|gb|EFU03006.1| regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315166289|gb|EFU10306.1| regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315171873|gb|EFU15890.1| regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|323481725|gb|ADX81164.1| response regulator vanRG [Enterococcus faecalis 62]
 gi|327536016|gb|AEA94850.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        DG  +E F   +      ++ + D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFDLAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +  R     P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  QMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N++            +   + +       ++ GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +F  I+G        N V +HI +LR+KL+        + +   +GY ID
Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID 234


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   + E       + + D+  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIM--MPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----AAIY 116
           E  ++IR  +  P+I ++   + Q  +  F SG DD + KP    E+  R+      +  
Sbjct: 63  EAIKVIRKFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +      +   + +               L  +E  IL  L  N+G+    ++++  
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGEGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEK 228


>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
 gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E           D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +++    +    G         +           D+  ++  L   G   ++
Sbjct: 6   LLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWML--PGGSGVQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L + ++ H     +P+I ++     +  +   DSG DD V KP   +E+    +      
Sbjct: 64  LAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIRRV 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+   E   +++           E   +   E ++L + M++  +  ++ Q+   +
Sbjct: 124 TPTSSDELIEFNGLKLDPVSHRATANDEPLDMGPTEFKLLHFFMSHSERVYSREQLLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRFGHDSMIQTVRGSGYRF 225


>gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           ++  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALDDVIDVQGLKLDPVSHRVTSGDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGGHDKLVQTVRGAGYRF 225


>gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea
           ananatis AJ13355]
          Length = 245

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +           D+  ++  L  G G + 
Sbjct: 21  ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGSGIQF 80

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 81  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 140

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +         +     +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 141 PMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 200

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 201 GT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 241


>gi|302333994|gb|ADL24187.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N  +T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEKTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +         E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL + +RA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+  R  
Sbjct: 62  ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D    +   +   ++   + +    L  +   D+  ++  L        
Sbjct: 4   ILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLML--PDCSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + I     VP+I +S    +   +   + G +D + KP  +R               
Sbjct: 62  DLCKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +V + R     +    + R     G    L  +E +ILE L+    K   + 
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +G +D   +   V+  I +LRKKL +       V +    GY +
Sbjct: 182 ELLQIGWG-YDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++      G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|194436317|ref|ZP_03068419.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|194425045|gb|EDX41030.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|323972772|gb|EGB67971.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
           10712]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
 gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +      +    +      D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVML--PHMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     +P+I ++        +   + G DD ++KP   RE++AR+ AI RR+ 
Sbjct: 62  EITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMS 121

Query: 121 VSNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  +                        +V+GE   L  +E  +L Y M  + + + + 
Sbjct: 122 QNEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   I+  FD   +  +V+ HIS LR+K+ +       + + R  GY+ 
Sbjct: 182 TLLDRIW-HFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTF 230


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           + + ++D   + +     F ++G  +      +    + S    D+  ++  + G  G +
Sbjct: 6   LIL-VEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSGIE 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V    R  +  + VP+I ++   +    +   ++G DD + KP   RE+LARVAA+ RR+
Sbjct: 65  VCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    E G IR+       E +G    L   E R+L++ M + G+  ++ Q+   +
Sbjct: 125 RPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G     +E   V+ HI +LRK L  +   DP+ + R  GY+++
Sbjct: 185 WGTG-SDIELRTVDVHIRRLRKALELEGASDPIRTVRSAGYALE 227


>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A     G  + G  +        S    D+  ++  L    +    
Sbjct: 12  LVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVML--PDQDGFS 69

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
           + R +R     VP++ ++   +++  +    +G DD V KP    E              
Sbjct: 70  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   ++R     + +  +  +    G    L   E ++L YLM N  K V+++QI   
Sbjct: 130 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  ++   +  VVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 VW-NYEFGGDSRVVESYISYLRRKI-DSTAPPLIHTIRGVGYVL 231


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146]
 gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +       D+G  +      +    L      D   ++  L   G   L
Sbjct: 12  ILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLML--PGVDGL 69

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P+I  S   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 70  DICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQE 129

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + +    R   V      L  RE  +L +   + G+  ++ Q+
Sbjct: 130 AMGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 190 LDKVWG-YQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYRF 236


>gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++           
Sbjct: 4   ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 62  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLEV 222


>gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +         E +  + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL + +RA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+  R  
Sbjct: 62  ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D    +  V+ HI +LR     +     + + R +GY ++ 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223


>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
 gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIREESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCKNLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKSPTYIKTIRGMGYRFNV 225


>gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma
           proteobacterium IMCC3088]
 gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma
           proteobacterium IMCC3088]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +           G      +S +    L +S   D+  ++  L        
Sbjct: 4   IAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQHFDLFLLDVML--PDGDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S  P++ ++   + +  L   + G DD + KP   RE++ARV A  RRL +
Sbjct: 62  SVCKQLRLFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANLRRLAL 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + ++ T  +++  D    +       L   E  +L  L A   K   + ++   IY   
Sbjct: 122 DSGQSPTSTLQLDQDTLTAQFGHRTTDLTAIECALLAALTAAPNKLFNRDELIDRIYS-D 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V +  ++SHI KLR+KL      + +++    GY  
Sbjct: 181 GRVVSDRTIDSHIKKLRQKLSRIDQGEVIEAVYGAGYRF 219


>gi|323187842|gb|EFZ73139.1| transcriptional regulatory protein baeR [Escherichia coli RN587/1]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233


>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
 gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D   +  F + E       + + D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVML--PDIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  EILKRIREKYTFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+  +     +            +         L   E  IL  L  NRGK ++  ++F
Sbjct: 121 YNDGGKIEGDVIDFAGVLLNRTSHECIFNERSLTLTPIEFDILWLLCENRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 181 RKVWKEEYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 229


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    L      D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWML--PKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A + R  
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 245

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 93/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56
            ++++D   +++        +G  +E   + +  E        +  + D+  ++  L   
Sbjct: 15  LLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLML--P 72

Query: 57  GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREI 108
               +EL R +R ++   P++ +S   S    +   + G DD + KP          R I
Sbjct: 73  NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           L R    + + + S+       I ++          +   L  +E +I+E  + N  +  
Sbjct: 133 LRRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ Q+   I+G+ D   +   V+ HI  +R+K+ +     D + + R  GY  
Sbjct: 193 SRDQLLEQIWGI-DYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244


>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEDP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 TPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
 gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D + +++  +      G+   GF          +    D+  ++  L G  G +
Sbjct: 1   MIFCVEDDSNIRELVVYTLESTGLKARGFEEGSSFLEALALETPDLVLLDIMLPGEDGME 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
           +L+  +       +P+I ++   +    +   D+G DD V KP    E+++R+       
Sbjct: 61  LLKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLRRS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R      +    G I +     +    GEV  L  +E  +L+ LM N    + + Q+  
Sbjct: 121 AREGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL +    + +++ R +GY +
Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGSAG--ERIETVRGVGYRM 222


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G  +      E       S +  ++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTK-GINLLVLDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ + IR  S+VP+I ++     Q  L  F+ GVD+ ++KP   + ++ARV AI  R ++
Sbjct: 65  EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTVQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E G I +   G    + G+   L  +E  +L+Y M+N+G+ + +  I + ++  
Sbjct: 125 TEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR KL  K     + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS--YIHTIWGMGYKFEV 223


>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +    +             D+  ++  + G KG ++
Sbjct: 4   ILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKGTQL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+L +     S +P+I IS   S    ++  + G DD + KP   + ++A++   + ++ 
Sbjct: 64  LQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLRKKQ 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + N  E   I V  +     +  +   L  +E  +L + + +  K  +++Q+ S I+G
Sbjct: 124 EKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLLSNIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D  +    V+SH+S LRKKL +K     + S   +GY +D
Sbjct: 184 -YDADIFTRTVDSHVSSLRKKLEDKGN--LIKSLPKVGYLLD 222


>gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103]
 gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103]
          Length = 245

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +           D+  ++  L  G G + 
Sbjct: 21  ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGSGIQF 80

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 81  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 140

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +         +     +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 141 PMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 200

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 201 GT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 241


>gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 236

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V D        +G  +              S + D+  ++  L       +
Sbjct: 5   ILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCML--PRMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           ++ + IR  S VP+I I+        +   + G DD + KP          +  L R+  
Sbjct: 63  DVCKKIRQSSSVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRRMGF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +   + ++  E G   +     +    G V  L  RE  ++ +L  + G+   + Q+ 
Sbjct: 123 VDQEQAIISSTIEFGEFIIDLRSFELRRNGCVINLTLREFELISFLAQHPGEVFTREQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
             ++G ++   +   V+  + + R+K+       +  + ++R +GY  +
Sbjct: 183 ERVWG-YEYYGDVRTVDVTVRRTREKIEGDTQNNYKYILTRRGVGYYFE 230


>gi|262040109|ref|ZP_06013362.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042462|gb|EEW43480.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +                     + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQAMDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  +   ++LE  + L +S   D+  ++  L        
Sbjct: 4   LLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINL--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           +L + IRA S VP++ ++        +   + G DD + KP         +  +      
Sbjct: 62  DLCKHIRATSDVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    ++G I V       E  G+   L  +E ++L  LM      +++ +I   + 
Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
              +   +EN +  +I +LR+K+ +       + ++R LGY  + 
Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGYKWNK 226


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +++   A    +G +++     E   ++      DV  I+  L    G ++
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R      + P++ ++   S Q  ++    G DD + KP H  E+LARV A + R  
Sbjct: 63  IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 9   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 67  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 224


>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 102/220 (46%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++  +       L  +   D+  ++  +   G   +
Sbjct: 3   LLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMI--PGISGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   + VP+I ++   +++  +   D+G +D + KP    E+LAR+    RR  
Sbjct: 61  EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++  TG + V         +     L  +E  +LE+L+ N+G+   +++I   ++ +
Sbjct: 121 SESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +I+ LRKKL      D + + R +GY I
Sbjct: 181 H-FDSDTSVIDVYINFLRKKLDAAGCRDLIQTIRGVGYII 219


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +G+   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   + E       + + D+  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIM--MPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  + +P+I ++   + Q  +  F SG DD + KP    E+  R++AI +R+  
Sbjct: 63  EAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVST 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    I+V                +   L  +E  IL  L  N+G+    ++++  
Sbjct: 123 GVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEK 228


>gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +           D++ ++  L   G   L
Sbjct: 5   ILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIML--PGASGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + IR     P+I ++   +    +     G DD + K     E++ARV A  RR   
Sbjct: 63  AICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRRYKK 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + + N      + +  +  +  +  +   L   E  IL  L  N+G  V+  Q+F
Sbjct: 123 YSGVAEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231


>gi|531494|emb|CAA56927.1| phoB [Shigella flexneri]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           E   +   E ++L + M +     ++ Q+ + 
Sbjct: 123 ISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
 gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235


>gi|312141823|ref|YP_004009159.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325672915|ref|ZP_08152609.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311891162|emb|CBH50481.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325556168|gb|EGD25836.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 230

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++D         G  +    S E      +    D+  ++  L   G    E
Sbjct: 8   LLIEDDDNLRDALSLALHRYGHVVTAAASGEAGLAALADGAPDIVVLDVML--PGVDGFE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   ++G DD V KP+  R + AR+ A+ RR   +
Sbjct: 66  VCRRIRARSGVPVIMLTARGEDVDVVSGLETGADDYVVKPVQPRILDARIKAVLRRTPTA 125

Query: 123 NNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +  D            L R E ++L  L    G+ +++ Q+   ++G
Sbjct: 126 PTVDGREVHGDLVIDRDALTLTEGARRPELTRTEWQLLLALSERPGQVLSREQLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            FD      +V++ + +LR K+         V + R  GY  
Sbjct: 186 -FDHLGGSRLVDACVQRLRAKIEKEPSNPRYVQTVRGFGYRF 226


>gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|168818174|ref|ZP_02830174.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344977|gb|EDZ31741.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086566|emb|CBY96337.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
 gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
          Length = 238

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D       ++G ++  F +           R D++ ++  L        
Sbjct: 11  IMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVML--PDMDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR     P++ ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 69  TLCQKIRESHLFPILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQLRRYTR 128

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N  +  G                      +  E   L   E  IL YL + +G+ V+  
Sbjct: 129 YNPSSGCGEEVPQEYDIRGLQISKANHKCFLFEEELSLTPLEFSILWYLCSRQGQVVSSE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++F A +G        N V SHI++LR+K+  N      + +   +GY+I+
Sbjct: 189 ELFEAAWGEK-FMDSNNTVMSHIARLREKMHENSRKPKFIKTVWGVGYTIE 238


>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G              L      D+  ++  L        
Sbjct: 5   ILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGL--PDLDGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +S +P+I ++   +L   +   ++G DD + KP +  E++ARV    R  + 
Sbjct: 63  EVTRRLRKNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLRHQQH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +              R    +G    L  RE  +L +L    G+  ++ +I   ++   
Sbjct: 123 GDVIRVGDLEIH-PQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVWS-G 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGYGLIRTVRGIGYAL 219


>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F ++   +      +    L       +  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  SQVP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRIL 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     ++      I V    R   ++G    L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TSKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL +K     + +   +GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGDK--AKYITTVVRMGYKFEGN 228


>gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis FV-1]
 gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92]
 gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92]
 gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLML--PGSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 73  LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++        +         QG +  L   E R+L+ L +  G   ++ Q+ + +Y  +
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SHI  L++KL         + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLQRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       ++G  ++         +L +     +  ++  L   G    
Sbjct: 3   ILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + IR    VP++ ++    ++  +     G DD + KP    E+LARV A + R   
Sbjct: 61  TVLQAIRRTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGKA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R          L  +E  +L  L+  RG+ +++T +   ++ +
Sbjct: 121 QDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRSKIDDPFEVKLLHTVRGMGYVLE 220


>gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 3/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D    L G +G+  +  +  E      +     +  ++      G    E
Sbjct: 6   LVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIM--MPGLDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ +S        +  F    DD + KP    E++ARV A  RR    
Sbjct: 64  VCRRIRRTSAVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARLRRAARP 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +        +      L  +E  ILE L+ N G+ V    I+  ++    
Sbjct: 124 DGILCAQGIALEPLTHRATLHDLELSLTPKEFGILELLLRNAGRPVPNRMIYEEVWRDAY 183

Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                N V  HI  LR KL        P+ +   +GY 
Sbjct: 184 LPSANNTVMVHIRNLRHKLAGIDSSAHPIQTVWGVGYR 221


>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A  +D        DG  +   ++      +   A  DV  ++  L        +
Sbjct: 6   LIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLML--PEMSGED 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117
           + R IR HS VP+I ++   S    +   + G DD V KP  +RE               
Sbjct: 62  VCRKIRQHSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +        V  +   +P RE  +LEYLM N G+ V + QI   I
Sbjct: 122 PATEEPQPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G+     +   ++ H+ ++R K+  + +    + + R +GY I
Sbjct: 182 WGIG-YVGDSKTLDVHVKRIRSKIEKDPVNPSLLVTVRGVGYKI 224


>gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
 gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         + G  +E  ++ +    L  +   DV+ ++  L   G   L 
Sbjct: 4   LLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRML--PGLDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +RA     P++ ++    +   ++  ++G DD + KP    E+LARV A+ RR  +
Sbjct: 62  LVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAVL 121

Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A                    +G+   L  +E RILE  + + G+ + +T +   +
Sbjct: 122 KTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEHV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +     + +VVE+HIS+LR KL    G   + + R +GY ++
Sbjct: 182 WDIH-FDPQTSVVETHISRLRNKLEKPFGDTLIQTVRGVGYKLE 224


>gi|229080389|ref|ZP_04212913.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228702951|gb|EEL55413.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   A+   +G   +    + E    +    + D+  ++  ++      
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGEEGIRMCKQVQPDLIILD--IMLPDLDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117
             + + IR  + VP+  +S        +     G DD + KP   +     +       +
Sbjct: 71  YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    + G I +            +  L  +E  IL +L+ N  +  +KT+++ A+
Sbjct: 131 YQEKARIMYQFGDITIDDAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKTRLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G       +N++  HI  LR+K+ +       + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHIRHLREKIEDNPSKPHYLVTVRGLGYKLN 234


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +  +           D+  ++  L   G    
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIML--PGMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ + IRA + +P++ +S        +     G DD + KP    E+             
Sbjct: 62  EICKQIRAVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +NN      + + +  R   V GE      +E  +L + + +  + ++K Q++ 
Sbjct: 122 LASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +G ++ A + + V  HI KLR+K+  +      +++    GY ++ 
Sbjct: 182 RNWG-YESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 228


>gi|125974109|ref|YP_001038019.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714334|gb|ABN52826.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I     +G    GF+  E       +   D+  ++  L   GE  
Sbjct: 1   MIYCVEDDRSIRELIIYALKSNGYEAVGFDKAEPFYKELENKLPDLVLLDIML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           +E+ + ++A      +P+I ++   +    +   DSG DD + KP    E     +    
Sbjct: 59  IEILKKLKASPKLRNIPVIMLTAKSAEYDKVLGLDSGADDYITKPFGIMEFLSRVKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +++    G + ++ D       G+   L  +E  +L+YLM N G  + + ++  
Sbjct: 119 RSGNVSNSSEISVGQLTMYIDKHVVIADGKEVALTFKEFELLKYLMENAGIVLTRDKLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++   E   ++ HI  LR+KL        +++ R +GY I
Sbjct: 179 EVWG-YEYEGETRTLDVHIRTLRQKLGEAGA--IIETVRGVGYKI 220


>gi|15925351|ref|NP_372885.1| two component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927941|ref|NP_375474.1| hypothetical protein SA2151 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284011|ref|NP_647099.1| hypothetical protein MW2282 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487144|ref|YP_044365.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87161981|ref|YP_494943.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196283|ref|YP_501105.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268798|ref|YP_001247741.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394868|ref|YP_001317543.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980676|ref|YP_001442935.1| hypothetical protein SAHV_2345 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510555|ref|YP_001576214.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142609|ref|ZP_03567102.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253314701|ref|ZP_04837914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255007137|ref|ZP_05145738.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794703|ref|ZP_05643682.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|258407383|ref|ZP_05680526.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|258422289|ref|ZP_05685201.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258439681|ref|ZP_05690427.1| two component response regulator [Staphylococcus aureus A9299]
 gi|258442762|ref|ZP_05691322.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|258446538|ref|ZP_05694693.1| two component response regulator [Staphylococcus aureus A6300]
 gi|258450345|ref|ZP_05698437.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|258451333|ref|ZP_05699366.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|258455279|ref|ZP_05703239.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048779|ref|ZP_06021660.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262051514|ref|ZP_06023735.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|269203993|ref|YP_003283262.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893807|ref|ZP_06302039.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|282917713|ref|ZP_06325464.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920347|ref|ZP_06328070.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282926915|ref|ZP_06334542.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|283767450|ref|ZP_06340365.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|284025384|ref|ZP_06379782.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294848904|ref|ZP_06789649.1| two-component system [Staphylococcus aureus A9754]
 gi|295405048|ref|ZP_06814861.1| two-component system [Staphylococcus aureus A8819]
 gi|296275447|ref|ZP_06857954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244105|ref|ZP_06927995.1| two-component system [Staphylococcus aureus A8796]
 gi|81696274|sp|Q6G6V9|HSSR_STAAS RecName: Full=Heme response regulator hssR
 gi|81704182|sp|Q7A039|HSSR_STAAW RecName: Full=Heme response regulator hssR
 gi|81705166|sp|Q7A3X1|HSSR_STAAN RecName: Full=Heme response regulator hssR
 gi|81781023|sp|Q99RR6|HSSR_STAAM RecName: Full=Heme response regulator hssR
 gi|122538783|sp|Q2FVQ9|HSSR_STAA8 RecName: Full=Heme response regulator hssR
 gi|123484649|sp|Q2FED5|HSSR_STAA3 RecName: Full=Heme response regulator hssR
 gi|187609569|sp|A7X5Y5|HSSR_STAA1 RecName: Full=Heme response regulator hssR
 gi|187609570|sp|A6U488|HSSR_STAA2 RecName: Full=Heme response regulator hssR
 gi|187609571|sp|A5IVE2|HSSR_STAA9 RecName: Full=Heme response regulator hssR
 gi|187609573|sp|A8Z552|HSSR_STAAT RecName: Full=Heme response regulator hssR
 gi|13702312|dbj|BAB43453.1| SA2151 [Staphylococcus aureus subsp. aureus N315]
 gi|14248135|dbj|BAB58523.1| similar to two component response regulator [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205454|dbj|BAB96147.1| MW2282 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245587|emb|CAG44065.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87127955|gb|ABD22469.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203841|gb|ABD31651.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741867|gb|ABQ50165.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947320|gb|ABR53256.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722811|dbj|BAF79228.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369364|gb|ABX30335.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257788675|gb|EEV27015.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|257840895|gb|EEV65346.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|257841720|gb|EEV66157.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257847457|gb|EEV71459.1| two component response regulator [Staphylococcus aureus A9299]
 gi|257851883|gb|EEV75817.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|257854606|gb|EEV77554.1| two component response regulator [Staphylococcus aureus A6300]
 gi|257856437|gb|EEV79346.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|257861125|gb|EEV83940.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|257862490|gb|EEV85258.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160498|gb|EEW45521.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|259163037|gb|EEW47598.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262076283|gb|ACY12256.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941947|emb|CBI50358.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318468|gb|EFB48827.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282591366|gb|EFB96439.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|282594293|gb|EFB99279.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282763865|gb|EFC03993.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|283461329|gb|EFC08413.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|285818024|gb|ADC38511.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus 04-02981]
 gi|294824283|gb|EFG40707.1| two-component system [Staphylococcus aureus A9754]
 gi|294969993|gb|EFG46011.1| two-component system [Staphylococcus aureus A8819]
 gi|297178883|gb|EFH38128.1| two-component system [Staphylococcus aureus A8796]
 gi|302752233|gb|ADL66410.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830708|emb|CBX35550.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128716|gb|EFT84717.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197445|gb|EFU27782.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329315049|gb|AEB89462.1| Heme response regulator hssR [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723627|gb|EGG60156.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726694|gb|EGG63155.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730100|gb|EGG66490.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21193]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G                +    D+  ++  L   G    +
Sbjct: 5   LIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCRRLRQVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +  +     V G+   +P +E  +LEYL+ N G+ + + Q+   +
Sbjct: 123 DGAVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     +             D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGES 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   ++
Sbjct: 123 EELLPQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKVEPDPATPRHLVTVRGLGYKFE 225


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +  + + D+  I   ++       
Sbjct: 6   ILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNK-DIKLILLDVMMPKMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+   IR +S+VP++ ++     +  L+ +  GVD+ + KP   + ++ARV A+  R + 
Sbjct: 65  EVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRRTVG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G I V    R   +  +   L  +E  +L Y + N+G  +++ +I S+++  
Sbjct: 125 EPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSREKILSSVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   +++H+ KLR K+  +   D + +   +GY  +
Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGERG--DYIKTVWGMGYKFE 222


>gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++           
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 70

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + + RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +            E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLEV 231


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     +    +G  +    +      +  S   D+  ++          L
Sbjct: 3   ILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIM--MPFMDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + IR  S VP+I ++   +    +     G DD V KP   +E+        R +  
Sbjct: 61  EAAQEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSKG 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y+   +++       + V   G   +V G    L R+E  +L  LM N+G+  ++ Q+  
Sbjct: 121 YKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G F+       V++HI  LR KL+       V +   +GY  +
Sbjct: 181 QIWG-FESEGTARTVDTHIKTLRLKLKAAGS--YVQTVWGVGYKFN 223


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 13  VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 70

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 71  CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 130

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 131 AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 191 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 233


>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yrkP
 gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
 gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +      +    L + +   +  +   ++  G   +
Sbjct: 5   ILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDS---LDLVILDIMMPGISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  +
Sbjct: 62  ETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            V  +  +   + +   L   E RIL+ LM  R K  +   I+
Sbjct: 122 YQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228


>gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDPGADDYICKPFSPRE-MVARVKAILRRSS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A    I  +         +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N V +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|194015253|ref|ZP_03053869.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194012657|gb|EDW22223.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +      +   +G     + +   +E L     ED+  +   ++  G+   
Sbjct: 6   ILIADDEKAIVKMVERVLKKEGFK-HIYKAYHADEALDIVKNEDIHLLLLDVMMPGKSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +++ P+  ++   S    L  F  G DD + KP +  E++AR+ A   R  +
Sbjct: 65  DVLPEMRKYTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTYI 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S           +                  EV     +   +L+Y   +    ++K QI
Sbjct: 125 SLKEDHDEAQSQYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G+     + N V  HI KLR+K+  +    + + + R +GY  
Sbjct: 185 YEKVWGVPSY-GDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231


>gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
 gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
          Length = 234

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE        L R   
Sbjct: 63  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 226


>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
 gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
          Length = 235

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 89/230 (38%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +  G +     +G  +   +  E    L  +   D+  ++      G+   
Sbjct: 5   ILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIM--MPGKSGY 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           ++ R IR+    +P+I ++        +     G DD + KP                  
Sbjct: 63  DVCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRRAR 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R     ++ +   +  + G  ++ +         +   L  RE ++L++   +  + +++
Sbjct: 123 RNHEEAKKGENVPDLFKFGESQIDAKTFKMMKGRKSIDLSEREVKLLQFFFLHANEVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            Q+ +A++G+ D       ++ HI++LRKK+  +      + +   +GY 
Sbjct: 183 DQLLNAVWGI-DYYGTTRTLDQHIAQLRKKVERDPSNPRFIRTVHRVGYR 231


>gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQNIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A    I  +         +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N V +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E           D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
          Length = 236

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E      +  + ++  ++  L    +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVML--PKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR K 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
           ++   +           +  ++ E F +           +E  +L YL+  +G+ + +  
Sbjct: 124 ASEIEKADVDDEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL         + + R LGY ++
Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
 gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family
           [Planctomyces brasiliensis DSM 5305]
          Length = 228

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   + D  +     DG  +      +       ++  D+  ++  L    G +V
Sbjct: 6   ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVTDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
               R       + ++ ++        +  F  G DD V KP   + +++RV        
Sbjct: 66  CRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRRPS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +      I V        +  E   L   E ++L  L+   G+   + ++    
Sbjct: 126 AKSNSQDIVTCRGISVDRMNHRVTLNNEEVLLTPTEFKLLWTLVRQSGRPFRRNELMDTC 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G  D    E  ++ HI  LR+KL +    D +++ R +GY  
Sbjct: 186 RGE-DANALERTIDVHIRSLRQKLDDH--ADLIETVRGVGYRF 225


>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 237

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 16/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G +++   S E  +        D+  ++  L   G   L 
Sbjct: 5   LIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVML--PGMDGLS 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  R     +P+I ++        +   D G DD V KP   RE+++RV A+ RR   
Sbjct: 63  LCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRRAAA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
           S+ R       +         Q     +         RE  +L  + +  G+   + ++ 
Sbjct: 123 SSRRQGGASHEIRVGDVVIWPQEYRVEVAGKPVQLTAREFTLLTVMASKPGRVWTRDELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY----SIDW 222
             ++G +  A +  +V+  +S LR K+         + + R +GY    S++W
Sbjct: 183 DRVWG-YTYAGDTRIVDVIVSHLRDKIEENPRKPRYITTVRGVGYGFGGSLEW 234


>gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A    +G+ +      +  E    +AR D+  ++  L   G+  L
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLML--PGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  TLCRQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172
                +   +R                +            E R+L   +++  + + + Q
Sbjct: 125 LPVNLQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G  +    +  ++  +S+LR++L +       + + R +GY +
Sbjct: 185 LVDLTQGR-EADPLDRSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVL 232


>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 9   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 67  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                T     +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|228991893|ref|ZP_04151829.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228998007|ref|ZP_04157608.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229005564|ref|ZP_04163274.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228755664|gb|EEM04999.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228761740|gb|EEM10685.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228767622|gb|EEM16249.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 223

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDGHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLAVVDIM--MPFIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +     + +   +   LP +E  +L  L    G+  ++ ++   ++G+
Sbjct: 122 LSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ HI +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   + +      ++   D+  +   ++      L
Sbjct: 3   ILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTN-PDIGLMILDIMMPQMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
            + R +R  SQ+P++ +S        +     G DD V KP +  E++A      R +  
Sbjct: 62  AVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRSQH 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +    +       I          V G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 DVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227


>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 16/227 (7%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD A V+   +      G  +      E    L    + D+  ++  L         + R
Sbjct: 2   DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVML--PKLDGFAVCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   +  
Sbjct: 60  RLRAESCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSAS 119

Query: 126 AETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           AE                 V ++ R     GE   L   E  +LE L    G+ V + +I
Sbjct: 120 AEPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAEI 179

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
              ++G     A +  VV+ ++++LR KL       + + + R  GY
Sbjct: 180 LEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 226


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++   N           +  D+  ++  L   G   L
Sbjct: 6   ILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWML--PGISGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R   S+VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR K
Sbjct: 64  EICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNK 123

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N          +  + R+      +  L  +E  +LEYLM++  + +++ QI   ++G
Sbjct: 124 EENPDLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   + +      G +G+S+              ++  D   ++      G   LE
Sbjct: 6   LLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVM--MPGMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IRA S++P+I ++        +   + G DD + KP   RE+    R      +  
Sbjct: 64  VCKRIRAKSRIPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLRRSQPS 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +R E+G + +   GR+  V+     L   E  +L  L+   G+ V +  +     G 
Sbjct: 124 AVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVALVRRAGRVVPRDALLGEA-GR 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  V+ HIS LR+KL + +G   + + R +GY  
Sbjct: 183 SDTVVGERTVDVHISHLRQKLGD-VGTRLIKTVRGVGYVF 221


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIML--PKMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+         
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D   + N V  H+ KLR+KL +       + +K   GY +
Sbjct: 182 WGV-DFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYM 224


>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A ++          G  +      E        +  D+  ++            + 
Sbjct: 2   VDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVM--MPKLDGYGVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  +  
Sbjct: 60  QELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 125 RA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179

Query: 178 YG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G   +  V+  VV+ HIS+LR KL  +    + + + R  GY  
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224


>gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE+  L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGEIINLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 226

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 8/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   +    I     +G  +           +       +  ++  L       
Sbjct: 5   VIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPI--YDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           L + R IR  S VP+I I+            D G+DD + KP    E    +  V     
Sbjct: 63  LTVLRRIRQSSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVLRRLG 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + K      +  P  +        V G+   L  +E  ++  L+   G    +  + + I
Sbjct: 123 QKKAEKYDYKFRPFEINLLKHQFMVDGKRVHLTPKEFSLMVALIKEPGVVQTRDDLLNEI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + N V+ +I  LR KL      D + + R +GY +
Sbjct: 183 WG-YDFDGQTNTVDVYIRALRNKLGKY--RDLIKTVRGIGYVL 222


>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
 gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G + E                 D+  ++  L       LE
Sbjct: 17  LVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLML--PVLDGLE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+  +
Sbjct: 75  VARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 134

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++   
Sbjct: 135 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 193 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 231


>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   +     A     G      +       L  S R D+  ++  L    G  +
Sbjct: 5   ILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDIDGADL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R     + +P+I ++        +   + G DD + KP + RE++ARV A+ RR  
Sbjct: 65  TRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRTS 124

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     E G +R+  D  +  V G+   L   E  +L   ++  G    + ++   
Sbjct: 125 GGTPQPAVLLEAGRVRLDPDRHEVTVAGQPLNLTPTEFHLLRIFLSLPGHAFTRRELIEE 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G ++    E  ++SHI  LR+KL +      +++   +GY +
Sbjct: 185 GVG-YEYEGMERTIDSHIKNLRRKLESVDAGIRIETVYGVGYRL 227


>gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
 gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           ++  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALDDVIDVQGLKLDPVSHRVTSGDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESGGHDKMVQTVRGAGYRF 225


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G + E                 D+  ++  L       LE
Sbjct: 8   LVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLML--PVLDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+  +
Sbjct: 66  VARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++   
Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    +G     +++ E           D++ I+      G    E
Sbjct: 5   LIVDDDYQILHYVSSYLEKEGFKTVTYSNAEDALKYLDKQHVDIAIIDIM--MNGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + I+ +  +P+I ++   +L    + + +G DD V KP   +E++ R+ A+ RR +++
Sbjct: 63  LCQEIKDNYTLPVIMLTARDALSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVLRRYQIN 122

Query: 123 NNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                       +          +   LP +E  +L  L+++  +  ++ +    ++G F
Sbjct: 123 AENELEIGNLKLNQSYLEISTANKTMTLPNKEFHLLFLLVSHPKQIFSREECIERVWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   ++  V+ HI +LR +L        +++ R LGY  + 
Sbjct: 182 DYDGDDRTVDVHIRRLRNRLNKIGSNISIETVRGLGYKAEV 222


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +              +   D   ++  L   G   L
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLML--PGVDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R IR  ++  P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 63  EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ + L +   R     + +    R+ +++GE   L  RE  +L Y   + G+  ++  +
Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +    D + +    GY  
Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229


>gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +   +G S +    +      L  +   D+  ++  L       
Sbjct: 6   ILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVML--PDLSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + I  H Q+P++ IS        L  F  G DD + KP   +E+  RV A  +   
Sbjct: 64  HQLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKARLKTTT 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +                      E   L  +E ++L YL+ +  K V+K QI   ++G 
Sbjct: 124 KTIQFGNITITDG-----IVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWGE 178

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                + N +  HI +LRKK+  +      + +   LGY  
Sbjct: 179 DYFEFD-NTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKF 218


>gi|283471583|emb|CAQ50794.1| response regulator protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIH 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|229060825|ref|ZP_04198180.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718472|gb|EEL70104.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIM--MPFIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|297589562|ref|ZP_06948203.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297578073|gb|EFH96786.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437222|gb|ADQ76293.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 14  LVVDDDPRILNYIASHLQTEHIDAFTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 72  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 131

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 132 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 191 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 230


>gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++         +G  +      E    L +     ++ ++  +  K     
Sbjct: 4   ILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR++   P+I ++    L+     F +G DD V KP   +E++ R+ A+ RR +V
Sbjct: 62  EVCEEIRSYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEV 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N +        +     +    G +  LP +E  +L  L +  G+   + ++   I+G 
Sbjct: 122 VNEKMIVLNNTFIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   ++ H+ +LR++  +   F  + + R +GY ++ 
Sbjct: 182 -DFNGDNRTIDVHVKRLRERFEHTDDF-VITTVRGVGYKLEV 221


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L      D   ++  L       +E
Sbjct: 13  LLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIML--PQLDGIE 70

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + + +R+  S+ P++ +S        +   + G DD V KP   RE              
Sbjct: 71  VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +          +R++ +  +     E+ PL  +E  +L YLM +    + + +
Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 191 LLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++E  +         ++   D+  ++           
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVM--MPNLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ +++R HS +P+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 63  EVAKMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   N      + V  DG    V  E  PL  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 123 KSWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D + E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 183 -YDYSGETRMIDTHIKNLRKKLNLP----YIKTVKGIGYKIDE 220


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E  ++ +           D+  ++  +       L
Sbjct: 5   ILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMI--PQLSGL 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R + RA +Q P+I ++    +   +   D G +D + KP    E+LARV    R++ 
Sbjct: 63  EVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVV 122

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + N  +T  +   +V     +    GE   L  RE  +L  L+ N+   + + Q+  ++
Sbjct: 123 QAANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  LR+K+        + + R +GY+I
Sbjct: 183 WG-YDYFGDTNVVDVYIRYLRQKVDKNFEIPIIQTVRGVGYTI 224


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F   +       + R D++ ++           
Sbjct: 5   ILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVM--MPEISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           E+ RIIR     P+I ++        +     G DD + KP +        +   R    
Sbjct: 63  EICRIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + + N  +   + + +D     +  EV  L   E  IL YL  NRG+ +   ++F 
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           A++         N V  HI +LR+K+         + +   +GY I+ 
Sbjct: 183 AVWKKKYFD-SNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229


>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 231

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 83/226 (36%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + D        +G  +      E       +   ++  ++  L        E
Sbjct: 6   LIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIML--PSMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAAI 115
           + + +R  S VP+I ++        +   + G DD + KP   RE        + R    
Sbjct: 64  ICKRVREKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEMN 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +      +   + +     + +       L  RE  +L++L   + +  ++ Q+  
Sbjct: 124 INADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G ++   +   V+  + +LR+K+ +       + +KR +GY  
Sbjct: 184 RVWG-YEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYF 228


>gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++          E    +      D+  ++  L        
Sbjct: 5   ILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINL--PKMNGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++   S    L     G DD + KP   + +  ++  + +  + 
Sbjct: 63  EVCQNIRKESNIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKMLKIDEN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+ +             +  V  E   L RRE + LEYL+ N+G   ++  + + ++G F
Sbjct: 123 SSYKFNNLS--FDFRSGELIVNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++ VV++ + +LRKKL +    D + + R +GY  D N
Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS--DMIKTVRGMGYIFDEN 219


>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           ++  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I IS        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRRVRDEKNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L ++      K Q+F
Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRF 227


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F           + R D++ ++           
Sbjct: 5   ILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVM--MPEISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           E+ +IIR     P+I ++        +     G DD + KP +        +   R    
Sbjct: 63  EICKIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y   + + N  +   + + +D     +  EV  L   E  IL YL  N+G+ +   ++F 
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           A++         N V  HI +LR+K+         + +   +GY I+ 
Sbjct: 183 AVWKEKYFD-SNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229


>gi|294811198|ref|ZP_06769841.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439846|ref|ZP_08214580.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323797|gb|EFG05440.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVSAIEAFLIGKGEK 59
           +LI+D   V+DG   +    G  ++   + E    L    +    +++ ++  L   G  
Sbjct: 5   LLIEDDVSVRDGMELVLRRHGYGVDTAATGEEALALLAGPAGTAVELAVLDLML--PGID 62

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E+ R +RA  S VP+I ++        +    +G DD V KP+    + AR+ A  RR
Sbjct: 63  GFEVCRRLRATGSTVPVIMLTARGDDDDIVYGLGAGADDYVVKPVTAPVLEARIRAALRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +   G      G    LP  E R+L  L A+ G+  ++ Q+  +
Sbjct: 123 AEPVRSARGENHAGLVIDRAGLTVTKHGAAVALPPTELRLLLELSASPGRVFSREQLLQS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++   D   +  +V++ + +LR K+ ++      + + R  GY  
Sbjct: 183 VW-EHDFLGDSRLVDAAVGRLRAKVEDRPAQPRWIQTVRGFGYRF 226


>gi|229030926|ref|ZP_04186945.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228730420|gb|EEL81381.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LNADMITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTADFQITTVRGLGYKLE 223


>gi|225018069|ref|ZP_03707261.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
 gi|224949066|gb|EEG30275.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    +    G  + G  S        +    D+  ++  L   G    
Sbjct: 6   ILVVEDDPDINDLLCTILRRQGFQVTGAFSGSEGRMCIAQYNYDLILLDLML--PGITGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IRA   +P+I +S   +    +     G DD + KP    E+ ARV A  RR K 
Sbjct: 64  ELIGEIRATKTMPVIVVSAKTAQADKISLLRLGADDFIVKPFDVDEVAARVEAQLRRYKQ 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     N      + +  D  +  V G+   L  RE  ILE L+    K   +  +F  
Sbjct: 124 FSSGSSGNLLRYKNLVLDRDAVEVSVNGQSVSLTAREFAILELLLRYPKKVFTRANLFEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   ++N V  H+S LR KL +     + + +   +G+ +
Sbjct: 184 VW-EEEFLGDDNTVNVHMSNLRSKLAKADPETEYIKTVWGIGFKM 227


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 80/229 (34%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++          G ++   +S E      +    D   ++  L   G   L
Sbjct: 6   ILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIML--PGISGL 63

Query: 62  ELPRIIRAHSQV-----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILAR 111
           E+ + IR +        P+I ++     +  +D  + G DD + KP        R     
Sbjct: 64  EVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVV 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +       + +     +   QG+   L   E  IL  L    G    + 
Sbjct: 124 RRGQKAEAHSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A+ G +D  V    ++  I  LRKKL        +++ R +GY  
Sbjct: 184 QIIDAVRG-YDFLVTPRAIDVQIFGLRKKLGAAGQS--IETVRGIGYKF 229


>gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  +E                 D+  ++  L   G+   
Sbjct: 4   ILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLML--PGKDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I +S        +     G DD + KP    E++AR+ +   R + 
Sbjct: 62  EIVREVREKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRYER 121

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       I          D     V G+   L  +E  ++ +L +N      K Q+F 
Sbjct: 122 LSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQLFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+G  D   +   V  HI KLRKK+  +    + +++    GY  +
Sbjct: 182 RIWGE-DYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGYRFN 227


>gi|313123384|ref|YP_004033643.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279947|gb|ADQ60666.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 241

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V       F  +G         E    +  +   D   I   L    +  +
Sbjct: 3   ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------- 109
           ++ + IR  S+  P+I ++   S    +     G DD V KP     ++           
Sbjct: 63  QVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPMALIARIKALHRRVM 122

Query: 110 ---ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                            +          S       +  V  L  +E  +L  +     +
Sbjct: 123 LEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPKQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K G   + +   +GY  D
Sbjct: 183 VFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235


>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G   E   + E      +S    +  ++  L   G+    
Sbjct: 6   LIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLML--PGKDGFS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112
           + + IR+ S VP++ ++   S    +   + G DD V KP  +R            +   
Sbjct: 64  VCKEIRSQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNLS 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   +  +   + +     + + QG+   L  RE ++  YL+  +G+ +++ +
Sbjct: 124 GQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRER 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   ++G +D   E+  V+  I +LR+KL +  G    + +KR +GY +
Sbjct: 184 MIEEVWG-YDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYL 231


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D   A     G  +    +         +   D+  ++  L        
Sbjct: 6   ILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVML--PDMSGF 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
              + +R      P+I +S   S +  +     G DD V KP                 +
Sbjct: 64  AATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTK 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  +  +  ++G +  L   E ++L Y M N  + ++K+QI   ++
Sbjct: 124 IDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + ++VES+IS +R+KL        + +KR  GY +
Sbjct: 184 D-YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 224


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   V++     F    + L           +    + DV  ++           E
Sbjct: 36  LVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVM--MPQLDGFE 93

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR     P+I ++        +   + G DD V KP   REI+AR+ AI RRL+  
Sbjct: 94  ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D R+  V GE      +E  +L  L+ + G   ++ Q+ 
Sbjct: 154 PKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQLL 213

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD   +   ++ HI K+R++L +KL +D + +   +GY  
Sbjct: 214 EQVWG-FDYFGDVRTIDVHIKKIRQRL-DKLPYDCIQTVWGIGYKF 257


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    +      L      D++ ++  L        
Sbjct: 47  ILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIML--PDVDGF 104

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     P+I ++   S    ++    G DD + KP    E++AR  A  RR   
Sbjct: 105 ELLRTIRTERTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +R +               + +  D R   V  +       E  IL YL  +RG  V 
Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++F A++     A   N V  HI  LR+KL +       + +   +GY+I+ 
Sbjct: 225 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 278


>gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134]
 gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   + +         G  ++  N+ +    +  +    +  ++  +    G +  
Sbjct: 10  LVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVEAG 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R +   +   +I ++      + L  FD G DD + KPI  R +      L R    
Sbjct: 70  RQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRREQK 129

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +     ++ + G + +  +            LP++E  +L +L  N  K  ++ ++  
Sbjct: 130 KHQKNEKKDKIQVGNLTIDRESYIVYNDKTPITLPKKEFEMLFFLAQNPNKVFSRDELLQ 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  V    V+ HI K+R+K+    G   + + + +GY +
Sbjct: 190 NIWGT-DVYVLARTVDVHIRKVREKI----GGGYIKTVKGVGYKL 229


>gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   ++D       + G+++    +      +  + + D+  ++          
Sbjct: 5   IILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIM--MPKMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           ++    IR    VP+I +S        +     G DD V KP            ++    
Sbjct: 63  IKACMKIREMLNVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYK 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +    +   + +     +  ++ +   L   E +IL  L  NRG+  +   
Sbjct: 123 QLNNNFKNTTKEVIQIDELSINISNHEVFLRDKQIKLTPYEFKILVLLAQNRGRVFSIAS 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+ +++   D    +  V  HI ++RKK+     ++ + +   +GY I+
Sbjct: 183 IYESVW-EEDYVASDRTVTVHIRRIRKKIGK--EYNYIKTVWGVGYKIE 228


>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +      G  ++          L      DV  ++  L   G   +E
Sbjct: 15  LVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGL--PGMDGIE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  +   ++ ++        L     G DD + KP   RE++ARV  + RR + S
Sbjct: 73  VCRTLRTFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRRPRQS 132

Query: 123 NNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + +    R+  + G+   L R E  +L+ L        
Sbjct: 133 AADRPGAAARGSGEEAARVFGALVIDVLAREVSLGGQPVELTRTEFDLLDTLSERPRVAF 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +++ +   I+G    A +E++V+ HI +LR+KL +       + + R +GY +
Sbjct: 193 SRSLLLERIWGGGAWAGDEHLVDVHIGRLRRKLGDDAREAKYIRTIRGIGYRM 245


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G ++E   + E            +  ++  L   G   +
Sbjct: 5   ILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRL--PGMDGV 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ R +R     +P++ ++    ++  +    +G DD + KP    E+           +
Sbjct: 63  EVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + +    GP+ +  + R          L  RE  +L YLM +  + +++ QI+  ++
Sbjct: 123 RQPTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D     +++E +IS LR+KL+       + + R +GY  +
Sbjct: 183 G-HDFDHGTSLLEVYISYLRRKLQEAGCPGYIATVRGVGYRYE 224


>gi|226365094|ref|YP_002782877.1| two-component response regulator MprA [Rhodococcus opacus B4]
 gi|226243584|dbj|BAH53932.1| two-component response regulator MprA [Rhodococcus opacus B4]
          Length = 228

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E            ++AR D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDALVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     + +    R+         L R E  +LE LMAN  + + + +I   
Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGETRLLHTVRGVGYVL 223


>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
 gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G +    ++      L  +    +  ++          +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E    IR    +P+I +S        +    +G DD + KP +          ++   + 
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +      I +     +  +  ++  L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVRIGDQLVKLTPREFDILELLARNRGVVFSIEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  ++   +     N V  HI KLR+K+         + +   +GY ++ 
Sbjct: 184 YELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   + +       +   D++ +   ++      +
Sbjct: 3   ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAEH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    E   I +       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 NVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 6   ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G I++    R   +  +   L  RE  +LE L  N+G  +   QI+
Sbjct: 124 MSGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232


>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 PSSNDI---LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL      D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGEL--RDCIKTVRGYGYKFEV 215


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +  S++     E      ++A  D   ++          L
Sbjct: 3   ILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIM--MPKLDGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + R +   +   P++ ++   S++  +   D+G +D + KP    E+LARV   + +  
Sbjct: 61  SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + V  D       G+   L  +E  +L Y++ N G  +++ ++   ++ 
Sbjct: 121 AVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     NVV+ +I  LRKK+        + + R  GY +  N
Sbjct: 180 NYDYMGSSNVVDVYIRYLRKKIDEGFEPKLIHTVRGAGYVLRVN 223


>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
 gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
          Length = 253

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  S++ D+  ++  L   G   +
Sbjct: 34  ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLML--PGSDGI 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   +SG DD V KP    E++ARV A  R    
Sbjct: 92  EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +   G      GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 152 KAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250


>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +           L  +       ++  L       +
Sbjct: 6   ILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLML--PKLDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    Q P+I ++        +   + G DD + KP   RE+LAR+ A+ RR  
Sbjct: 64  EVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTT 123

Query: 121 VSNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                    P+             ++  +       G+   L  +E  +L Y +   G+ 
Sbjct: 124 PDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++  I + ++G +D A E  +V+ HIS LR+K+  +      + + R  GY  
Sbjct: 184 LSRDAILNHVWG-YDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236


>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N+ E           D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKKVREVKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   + GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLD---------FFDSGVDDVVNKPIHHREILARV 112
           ++ + IR     P+I ++        +                 ++V +         R 
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSVADDYITKPFNPLEMVARVKAQLRQYMRY 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                + +      +   + +        + G+   L   E  IL YL   +G  V+  +
Sbjct: 123 KQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +F A++G        N V +HI +LR+K++        + +   +GY+I+ 
Sbjct: 183 LFEAVWGERYFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      ++  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103]
 gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
          Length = 235

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I                       +    D+  ++  L   G+  
Sbjct: 9   LILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLML--PGKDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S++P+I ++        L   + G DD V KP   RE++ARV  I RR+K
Sbjct: 67  LTLCREIRRDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRVK 126

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S   A     ++V         + E   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RSPEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL N       + +   +GY  +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWE 228


>gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +   +E    LE           D+  ++  L        
Sbjct: 4   ILLVEDDETLAMGIKYALEQEAFLVEVATELESARKRIDEKDFDLILLDVML--PNGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR +S +P+I ++        +   + G DD + KP   +E++AR+ A  RR++ 
Sbjct: 62  QLCKEIRTYSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G IR+    +   V+     L   E R+L  LM N G+ + + Q+   ++
Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
               + V++N +  HI KLR+K+ +     + + + R LGY 
Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIEDDPSKPEHILTVRGLGYR 223


>gi|210610528|ref|ZP_03288454.1| hypothetical protein CLONEX_00644 [Clostridium nexile DSM 1787]
 gi|210152387|gb|EEA83393.1| hypothetical protein CLONEX_00644 [Clostridium nexile DSM 1787]
          Length = 244

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 18  ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 75

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 76  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 135

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 136 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+    G   + +   +GY 
Sbjct: 196 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 237


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 NRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +             I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +    L   +G  ++                 D+  ++  L   G    
Sbjct: 4   IMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGTDLILLDLML--PGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S VP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 62  EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  E G +R+  +    EV G    +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R K+         + + R LGY  +
Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225


>gi|168259535|ref|ZP_02681508.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205350765|gb|EDZ37396.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAKQSFIRAVYGVGYRWE 233


>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
 gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 241

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +   +  E    +      ++  ++           
Sbjct: 8   ILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVM--MPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP+I ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 66  GVCQEIRKESDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYK 125

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  +          G +++ ++ R    + E   L   E  +LE L++  G+  +++ I
Sbjct: 126 ININSSIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSI 185

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY  
Sbjct: 186 LQEVWGYKPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234


>gi|329726494|gb|EGG62957.1| heme response regulator HssR [Staphylococcus epidermidis VCU144]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++      G 
Sbjct: 1   MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +++ +        + +          +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDYIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSISIQTVRGQGYRVDQN 223


>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++          L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++    P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + E           +    R+         L R E  +L   + N  K + ++ + 
Sbjct: 123 PEPEQDEAPEQLSFADLTLDPGSREVTRGNRRISLTRTEFALLAVFLQNPEKVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEPRLIHTVRGVGYVLREAN 231


>gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +           D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +         +     +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 234

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V          +G  +   +  +           ++  ++  L        
Sbjct: 4   ILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIML--PDMDGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ + IR  +  P+I ++   +    +  F  G DD + KP                   
Sbjct: 62  EVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              I             G + +  D  + +V+G V  L  +E  +L+YL     + V   
Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           QI+ +++G  +   ++N V  HIS+LR K+  +      + + R LGY +
Sbjct: 182 QIYESVWGK-EFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230


>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
 gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
          Length = 235

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  +  F +         S + D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E+ ARV    RR   
Sbjct: 63  HICQKIRERYFYPIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRRYVC 122

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN              +   + +  +     + G+   L   E  +L YL  NRGK ++
Sbjct: 123 YNNAADIEKENVLVTEYDINGLVINKNTHKCTLYGKAVTLTPIEFSVLWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++F  ++G        N V +HI +LR+KL+        + +   +GY+I+ 
Sbjct: 183 SEELFENVWGEKFLD-NNNTVMAHIGRLREKLKEPARNPKFIKTVWGVGYTIEE 235


>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A ++          G  +      E        A  D+  ++            + 
Sbjct: 2   VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVM--MPKLDGYGVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAIYR 117
           + +R  S VP+I ++    +   +   + G DD V KP   +E+         RV     
Sbjct: 60  QELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTSA 119

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 120 SGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEV 179

Query: 178 YG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G   +  V+  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 224


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G       +             D+  ++  L       L
Sbjct: 6   ILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVML--PELSGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IRA+    P+I ++   +L   +   D G +D + KP    E+ AR+    R   
Sbjct: 64  EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPA 123

Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++   +                R+   + E   L  +E  +L Y++ N+ + ++  Q+ 
Sbjct: 124 STSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G FD   + N+V  +I  LRKK+        + + R +GY +
Sbjct: 184 TNVWG-FDYYGDTNIVYVYIRYLRKKIDASFSTPYIQTVRGVGYML 228


>gi|253730033|ref|ZP_04864198.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734222|ref|ZP_04868387.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297209820|ref|ZP_06926216.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910832|ref|ZP_07128282.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379557|ref|ZP_07362290.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253726246|gb|EES94975.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727917|gb|EES96646.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296885493|gb|EFH24430.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887812|gb|EFK83007.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304341733|gb|EFM07639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139067|gb|EFW30949.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142555|gb|EFW34364.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 14  LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 72  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 131

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 132 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 191 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 230


>gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G++       E      +  R ++  ++          +E
Sbjct: 9   LVVDDDPHIRDLLTFALQKAGLATREAADGEAALADIALYRPNLVVLDIN--MPRMDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IRA   +P++ +S        +   + G DD V KP   RE++ARVAAI RR+  +
Sbjct: 67  ACRRIRAQGDLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAILRRIARN 126

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 G          +DG     +    PL   E  I+  L     +   +  I   +
Sbjct: 127 PPPPTPGQFAFGGLGLDADGWRATWRDVEVPLTVTEFSIVRTLADAPRRVFTRDAIIDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G    A+ +  ++SH+  LR K     G D ++++  +GY +
Sbjct: 187 HG-PGFAMTDRTIDSHVRNLRAKFAAVGGADVIETRPGIGYQL 228


>gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 223

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + +    L +    D++ ++      G    
Sbjct: 3   ILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +     +P++ ++    L+     F +G DD V KP   +E+L R+AAI RR+  
Sbjct: 61  TLTETLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRMDK 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N          +     +  +  E   LP +E  +L  L +   +   ++ I   ++G 
Sbjct: 121 KNQITIQVGQLVIDRRSFEVIIGEETLILPLKEFELLALLASRPNQVFTRSYIMEQVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  + +H+ ++R++L        + + R +GY ++
Sbjct: 180 YDYDGDEQTLNTHVKRVRERLNRFDTAVEIITVRGVGYKLE 220


>gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   +           G   E  NS         +   D+  ++  L    G +V
Sbjct: 4   ILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISGHEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           L + +        P++ +S        +   + G DD V KP   RE++ RV        
Sbjct: 64  LRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRAD 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  + +   G I++ +      V+GE   L   E R+L  L+   G+   +  + S +
Sbjct: 124 ADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSDV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+    +    V++HI +LR+KL      D +++ R +GY ++
Sbjct: 184 WGI-QAEIHTRTVDTHIKRLREKLGPAG--DIIETVRGVGYKLN 224


>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V          +G  +   ++ E    L  + R DV  ++  L   G   L
Sbjct: 11  ILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIML--PGMNGL 68

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R +      P I  ++   ++   +   + G DD + KP    E    +  +    +
Sbjct: 69  EVCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRKQ 128

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V         + + +  R       +  L   E  +L   + N    + +  +   I
Sbjct: 129 PTEVHGELLCFADLELDTATRQAHRGQRMIDLSTTEYELLTLFLRNPRVVLTRGLLMERI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D     NV+E +I  LR KL  +     + + R  GY +
Sbjct: 189 WGN-DFEGSPNVLEVYIGHLRNKLEREGEQRLLQTIRGTGYVL 230


>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++      F  +G ++      +       S + D+  ++          +
Sbjct: 9   ILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIM--MPKVDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +  +IR  S VP+I ++     +  L  ++ G DD + KP   + ++A+V A       
Sbjct: 67  TVLEMIRKVSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLKRTSE 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E   + +     + +V  E+  L  +E  +L YL  N G  +++  I   ++G
Sbjct: 127 DTFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTILDNVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D   +   V+++I +LR+KL NK     + + R  GY  +
Sbjct: 187 L-DYYGDLRTVDTNIKRLREKLGNKAS--YIVTVRGSGYRFE 225


>gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 244

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 21  LVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 79  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 138

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 139 VVAASTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 199 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 240


>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 252

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---------REDVSAIEAF 52
            ++++D  +++D  +    D+G  +   +       L               D+  ++  
Sbjct: 21  ILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDLM 80

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       L++ R++R H   +P++ +S   S    +   + G DD + KP   RE++AR
Sbjct: 81  L--PQVNGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVAR 138

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKR 167
             A+ RR K +++ + +            E +     E   L  +E R+LE  M+   + 
Sbjct: 139 CRALIRRQKFTSSSSSSVKQFRDITLYTQECRVTLAEEEINLSPKEYRLLELFMSYPRRV 198

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G  D   +   V+ HI  LR+KL  +      + + R  GY  
Sbjct: 199 WSRDQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEQDPSQPQYLITVRGFGYRF 251


>gi|293401478|ref|ZP_06645621.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305116|gb|EFE46362.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 89/223 (39%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +  G +     +G  +    S +    L  +   D+  ++  L        
Sbjct: 3   ILFVEDDQAIALGLVYSLEKEGYEVIHCVSQKAALGLLEAQVFDLLLLDVSL--PDGDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +    VP+I ++        +   D G DD V KP   +E+L+R+ ++ RR + 
Sbjct: 61  TICKQAKHLHDVPVIFLTALDDEVNVVMGLDLGGDDYVTKPFRIKELLSRIKSVLRRYQK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                                +          E R+L   + ++G+ ++++Q+   I+ +
Sbjct: 121 DALDIVQIQHLEIHIREGKVYREGSEVFLTALEYRLLMVFVNHQGQVLSRSQLLEGIWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             + V +N +  +I +LR+KL  +    + + + R  GY ++ 
Sbjct: 181 AGDFVNDNTLSVYIKRLREKLEKDAAEPEIIKTIRGRGYRMEK 223


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +          +G  +      E         + D+  ++  L    G +V
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVSGIEV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++        +   D+G DD + KP    E++AR+ A+ RR++
Sbjct: 65  CRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRIR 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++R   G I +          G+   L   E R+L++ M + G+  ++ Q+  A++
Sbjct: 125 PGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  VE   V+ H+ +LRK L  +   +P+ + R  GYS+D
Sbjct: 185 G-SDVYVEARTVDVHVGRLRKALNVEESANPIRTVRSAGYSLD 226


>gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri VA-6]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L+G  G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           E   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++  
Sbjct: 80  VCRRVQAARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|170769721|ref|ZP_02904174.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
 gi|170121335|gb|EDS90266.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYIRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S VP+I ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDVPIIMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +  +    + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDVEQSFIRAVYGVGYRWE 233


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 7   VVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 65  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124

Query: 124 NRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +               ++ D    + +G+   L  RE  +  YL  + G+ + +  +  
Sbjct: 125 AQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +          A  D+  ++  L   G    E
Sbjct: 5   LVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLML--PGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R +R    VP+I +S   +    +   + G DD V KP   RE    +  V    + +
Sbjct: 63  VCRALRTRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQDV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +  E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   I+G
Sbjct: 123 ELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D   +   ++ H+ +LR KL  +      + + R LGY  +
Sbjct: 183 A-DYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGYKFE 224


>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
 gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D                 + +    L    + D+  ++      G   +
Sbjct: 6   ILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWM--MPGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++     + +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V++       + +        +  +   +   E R+LE+ + ++ +   ++Q+   
Sbjct: 124 ADPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      D V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALAIDGHEDLVQTVRGTGYRF 226


>gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         +G   +    +L            D+  ++  L       
Sbjct: 5   ILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIML--PDGNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+    IR HS VP++ +S        L     G DD V KP   +E++ RV +  RR  
Sbjct: 63  LDFCAKIRGHSTVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQLRRAG 122

Query: 121 VSNNRAETG----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               +              P  +  D  +  +  +   L  +E  +L   +  +G+ +++
Sbjct: 123 TYAKQDTARSGESRILKAGPFTMNEDETEMYLHDQPLDLTAKEAGLLACFIRRQGQIISQ 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             ++  ++         N +  HI +LR+K+         + + + LGY ++ 
Sbjct: 183 ETLYETVWNES-YFGAANTLMVHIRRLREKVEENPSSPVLIKTVKGLGYRLNV 234


>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 230

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +  +      ++   D++ +   ++      L
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTN-PDIALMILDVMMPNMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        + + S   + +             L   E  IL  L ++  +  +   IF 
Sbjct: 122 AVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
           with baes [Clostridium sticklandii DSM 519]
 gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Clostridium sticklandii]
          Length = 227

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++D        +G +   F S +           D+  ++  +   G   L
Sbjct: 4   IFIVDDEKRIRDLIEMYLKKEGYNTTTFESADGVLSAIREFMPDLLVLDIMMQ--GLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S+VP+I +S        +   + G DD + KP   RE++ R+  I +R   
Sbjct: 62  DLCKEIRKISEVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRTTK 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+   +              R  +  G+  PL  +E  +LE+LM N    +++ QI  +I
Sbjct: 122 SSEHNDEILKTKDLEIYVQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIESI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D    +  V+  I +LRKKL+       + +    GY ID N
Sbjct: 182 WG-YDYDGYDRNVDDTIKRLRKKLKTAKSRVVIKTVWGYGYRIDDN 226


>gi|300936615|ref|ZP_07151519.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300458196|gb|EFK21689.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|323968214|gb|EGB63623.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323977760|gb|EGB72846.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324114498|gb|EGC08467.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497900|gb|EGC95759.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ECD227]
 gi|327253212|gb|EGE64866.1| transcriptional regulatory protein baeR [Escherichia coli STEC_7v]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233


>gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 236

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++          G       + E      ++ + D+  ++  L     +  
Sbjct: 7   IVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGL--PDMRGA 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ R IR  S VP+I +S     +  +   D+G DD + KP    E+    RVA  +   
Sbjct: 65  DVLRAIREWSSVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G +R+    R+  V G+   L   E  +L+ L ++ G+ +   Q+  A++G
Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                 + + +  +I +LR+K+         + ++  +GY +
Sbjct: 185 SG-YEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRL 225


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 9   VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 66

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 67  CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 126

Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 127 AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 187 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 229


>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
           iners AB-1]
 gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
 gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
          Length = 234

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE        L R   
Sbjct: 63  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 226


>gi|239982264|ref|ZP_04704788.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 2   LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 60  VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 119

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V  E   L   E  +L  L       +++ Q+ 
Sbjct: 120 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 180 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 221


>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  ++ E           D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRKVREAKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SRIWDM-ESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 233

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      +          +    +  ++  L   G    
Sbjct: 7   ILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVG--GY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------A 114
           E+ + IR     P++ +S        +     G DD + KP    E+ ARV         
Sbjct: 65  EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLN 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I +  D  + +V      L  +E  IL+  + N  K   K Q+F
Sbjct: 125 FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +I+G  +   +EN V  HI +LR+K+  +      + +   +GY +
Sbjct: 185 KSIWGE-NYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230


>gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
 gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
          Length = 239

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + +   LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVCGLGYKLE 226


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           + + +RA   + P++ +S        +   + G DD + KP   R               
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++++    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
 gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
          Length = 231

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A    I  +         +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCYLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N V +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G  +   ++             D+  ++  L   G    
Sbjct: 5   LLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIML--PGMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114
            L + IR  S VP++ IS        +     G DD V KP    E+ AR+         
Sbjct: 63  SLCQSIRWVSDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +        G + +  + +   +  E   L   E  +L  L  N  +   K +++
Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             I+   D     N +  HI +LR KL  +      +++   +GY  
Sbjct: 183 EHIWHEEDIE-SSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGYRF 228


>gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       +S    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRRESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    +  E   +   L   E +IL  L  N  +  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILSRNPNRIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +   A     G  +      E    L    R D+  ++  L        +
Sbjct: 4   LLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELF--PRADLIILDLML--PKLDGFK 59

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   + R   ++P++ ++     +  +   + G DD V KP   +E+         R   
Sbjct: 60  VLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEV-VARVKALLRRAG 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+R+    R   ++G+  PL + E  +L  L  + G    + ++   ++G  
Sbjct: 119 LKEELCYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWG-P 177

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           D    + VV+ HI+ LRKKL  +      +++ R +GY  
Sbjct: 178 DFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRF 217


>gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 229

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +   N+ +        +  D+  ++  +    G + 
Sbjct: 8   ILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R +       ++ ++      + +  F+ G DD + KPI  R +++R+ AI RR  
Sbjct: 68  CRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRNS 127

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S   ++         +  +       G    L ++E  +L  L +  GK   +  I   
Sbjct: 128 PSEELSDNKLEIGDLVIDREAYLVFQGGNKVVLAKKEFELLYLLASKPGKVYTREIILKN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+      V    ++ HI KLR+KL        V + + +GY  +
Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKLGET----YVSTVKGVGYKFE 227


>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +     +    +G ++             ++   D   ++      G   +
Sbjct: 5   LLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVM--MPGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           E+ R IR  S +P++ ++        +   + G DD +             R        
Sbjct: 63  EVVRRIRQKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRATP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R   G I +   GR   V G+   L   E  IL  L    G+ VA+  +     G
Sbjct: 123 DAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEA-G 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             D  V    V+ HIS LR+KL +       + + R +GY +
Sbjct: 182 RGDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVL 223


>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
 gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
 gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Corby]
 gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 226

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G ++   +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+       ++
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       E   I V    R   + G+   L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G       +  ++ HIS LR KL +   G   V + R  GY  +
Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMFN 225


>gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942]
 gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G       +           +  +  ++  L   G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVML--PGLSGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P+I ++   S+   +   D G +D V KP    E+LAR+ A  R+  
Sbjct: 64  EVLRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +    +V    R+ +   +   L  RE  +L +L+ +  + + + QI ++++G
Sbjct: 124 SDPGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + NVV+ +I  +RKK+        + + R +GY+I
Sbjct: 184 -FDYLGDTNVVDVYIRYIRKKMDYPYEKQLIHTVRGVGYAI 223


>gi|253582051|ref|ZP_04859275.1| response regulator [Fusobacterium varium ATCC 27725]
 gi|251836400|gb|EES64937.1| response regulator [Fusobacterium varium ATCC 27725]
          Length = 221

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++          E    +      D+  ++  L        
Sbjct: 5   ILIVEDEKNLIKVIEDTLVEEDFITFKALDGETALEMFYEHNPDLILLDINL--PKMNGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++   S    L     G DD + KP   + +  ++  I +  + 
Sbjct: 63  EVCQNIRRESNIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKILKIDEN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+ +             +  V GE   L RRE + LEYL+ N+G   ++  + + ++G F
Sbjct: 123 SSYKFSNLS--FDFRSGELVVNGENIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++ VV++ + +LRKKL +    D + + R +GY  D N
Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS--DMIKTIRGMGYIFDEN 219


>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +       +  S       ++           
Sbjct: 13  ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVM--MPKMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ + +R  S +P++ ++        +   + G DD + K    R               
Sbjct: 71  EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 + +V +N    G + +    R   + G+   L   E  +L  L     + +++ 
Sbjct: 131 SMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRD 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           Q+  A+ G     V +  V+ HIS LR+KL  +      + + R +GY  +
Sbjct: 191 QLLDAVAGRS-YDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240


>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
 gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D    ++        DG  +      E    +      D+  ++  +    G +V 
Sbjct: 9   LVVEDEMAQREVLAYNLEADGFRVLRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIEVC 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +       +P+I +S        +   ++G DD V KP    E++ARV    RR++ 
Sbjct: 69  RRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          I + ++            L   E R+L   M   G+  ++ Q+   ++G
Sbjct: 129 STVGVRLEFDDIVLDAETHKVSRADNPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  +           L  S   D+  ++  L       LE
Sbjct: 5   LIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIML--PQLNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        +   DSG DD + KP    E+LAR+ A+ RR +V 
Sbjct: 63  VLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEVR 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   I +        V  +   L + E  +L+  + N+   +++ +I   ++G  
Sbjct: 123 GTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  ++EN V+ ++  LR K+  K G + + + R +GY +
Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKTGEEYISTVRGVGYVM 220


>gi|146312332|ref|YP_001177406.1| DNA-binding transcriptional regulator BaeR [Enterobacter sp. 638]
 gi|145319208|gb|ABP61355.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 240

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    +  +           ++  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAAGYAPSLISHGDQVLPYVRQTPPNLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNQLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWE 233


>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
 gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
          Length = 242

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +L++D   ++         +G  +  F          ++  ++DV  I   L+  G   
Sbjct: 14  ILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLNG 73

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112
           LEL R I       P++ +S   +    +   + G DD + KP          R ++ R 
Sbjct: 74  LELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRRS 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               + ++ S+   E   I++F +        +   L  +E ++LE  M N  +  ++  
Sbjct: 134 KRNKKNIEKSHTVIEFNHIKMFLEECRVTSFDKEITLSPKEFKLLELFMKNPKRVWSRDL 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I   I+   D   +   V+ H+  LR+KL  +      + + R  GY  
Sbjct: 194 ILEKIW-EIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241


>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
 gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
          Length = 232

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + DV  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIML--PGVDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ + + +    + +I ++        +   + G DD + KP +       I A +  + 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G  +E  ++ +   +L  S   D+  ++  L G G   L
Sbjct: 3   ILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L   IRA +   P++ +S    +   +    +G DD V KP    E    +  ++   R
Sbjct: 62  RLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRGR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R     G    L  RE R+LEYLM N G+ V +T +   +
Sbjct: 122 SDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDTPLIHTIRNAGYML 223


>gi|27468859|ref|NP_765496.1| two component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|81842588|sp|Q8CN92|HSSR_STAES RecName: Full=Heme response regulator hssR
 gi|27316407|gb|AAO05582.1|AE016750_187 two component response regulator [Staphylococcus epidermidis ATCC
           12228]
          Length = 224

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++      G 
Sbjct: 1   MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +++ +        + +          +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIGKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223


>gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 242

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            +LI+D   ++         +G  +  F         +     +D   I   L+  G   
Sbjct: 14  ILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLNG 73

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112
           LEL R I       P++ +S   +    +   + G DD + KP          R +L R 
Sbjct: 74  LELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRRS 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                + +      E   I++F++        +   L  +E ++LE  + N  +  ++  
Sbjct: 134 KRGKEKKQKIETIIEYKNIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRDL 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I   I+ + D   +   V+ H+  LR+KL         + + R  GY  
Sbjct: 194 ILEKIWAI-DFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRF 241


>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G ++           +      D++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQN-DIALIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R +R HS+VP+I ++     +  L  F+ GVD+ +                     +
Sbjct: 65  QVCREVRMHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTNV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I V     + ++ G    L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 FAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKG--EYIKTIWGMGYKFEV 224


>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    + +    + +  +  +  ++  L   GE  L
Sbjct: 6   ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIML--PGEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR   
Sbjct: 64  QICRKIRESYIIPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSFY 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAKT 171
            N +                   +                 E  IL  L  + GK  +  
Sbjct: 124 MNTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSVE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +IF +++         N V  HI ++R+KL  N      + +   +GY I+
Sbjct: 184 KIFESVWKQKFYE-SNNTVMVHIWRMREKLESNPKEPKIIKTIWGVGYKIE 233


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           + + +RA   + P++ +S        +   + G DD + KP   R               
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++++    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +        +G  ++             +   DV  ++  L   G    
Sbjct: 3   ILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIML--PGMHGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ +S         D FD G DD + KP     ++AR+ A+ RR  
Sbjct: 61  QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T          R      +V  L  RE  +LE+L+ N+G  V+K +I  +++ 
Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   ++NVVE +I  LR+K+    G   +++ R +GY +
Sbjct: 181 -SNYDGDDNVVEVYIGYLRRKIDAPFGMATIETVRGVGYRL 220


>gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
 gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
          Length = 238

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +      +      +    D+  ++  L   GE  L
Sbjct: 7   LLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA    P++ +S        +   + G DD + KP + RE++AR+ A+ RR++ 
Sbjct: 65  SLCRAIRADGGPPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRRVQT 124

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G +   +  R  + QG    L   E  +L  L     + +++  +
Sbjct: 125 PGATPVNGAGALAFCGYVLDQAQRRLTDPQGAEVTLTAGEYELLVALATRPRRVLSRDDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                G      +   ++  IS+LR+K+  +      + + R  GY  
Sbjct: 185 LEITRGRSAGPFD-RSIDVQISRLRRKIEPDPADPAIIKTVRSGGYIF 231


>gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 245

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T            +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 248

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++    +     G S+   ++ +   +     + D+  ++  L         
Sbjct: 16  LVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGL--PDIDGFA 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++    ++  +    SG DD V KP H +E+L R+ AI RR  +
Sbjct: 74  VTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDM 133

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +     +    G    L   E R+L  L+A   + V K +I S
Sbjct: 134 PPSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILS 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D A +  +V++++  LR+K+ ++     + + R +GY +
Sbjct: 194 EVW-HYDFAGDARIVDTYVRNLRRKI-DRFEPQLIQTVRGVGYCL 236


>gi|238895651|ref|YP_002920386.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330010883|ref|ZP_08306922.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|238547968|dbj|BAH64319.1| two-compoent regulatory system response regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328534358|gb|EGF60966.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 240

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233


>gi|323439955|gb|EGA97670.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 224

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L     +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYGGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPHMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A     +        +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 124 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + + +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 240


>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|331698935|ref|YP_004335174.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953624|gb|AEA27321.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 225

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                   R DV  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLTIVLRGEGFDTAVVGDGTKALPAVRELRPDVVLLDLML--PGMNGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+ S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR++  
Sbjct: 64  VCRAIRSESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARIRARVRRVENE 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +          G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 PAEQLSIGDVDIDVPAHQVTRGGVPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 221


>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G         +      ++   D++ +   ++      L
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTN-PDIALMILDVMMPNMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        + + S   + +             L   E  IL  L ++  +  +   IF 
Sbjct: 122 AVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 231

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      +    L    +  +  ++  L       +
Sbjct: 6   ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWML--PVYDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++         +  D G+DD + KP    E+ AR+  I RRL+ 
Sbjct: 64  TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      E   +++         +GE   L  +E  +L  LM +  K  ++ ++   
Sbjct: 124 EKRQVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   + N V+ +I  LR KL      + + + R  GY +
Sbjct: 184 VWG-YDFVGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224


>gi|331086452|ref|ZP_08335532.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406218|gb|EGG85741.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 227

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S E   S    + L +      + +   L+  G    
Sbjct: 4   ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR    + +I ++   SL   +    SG DD + KP   RE+LAR+    R  + 
Sbjct: 64  AVLEEIRKKGNLQVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHTEE 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      R     +              + R+E  ILE L+ N  +  +K  IF   
Sbjct: 124 KEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIFEYA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 184 WDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 225


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++      +    L      D   ++  L       +
Sbjct: 4   ILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLML--PVMDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
            + + IR      P+I ++        +   + G DD + KP   RE++A      R + 
Sbjct: 62  TVLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        +  +   + +  + +      ++  L  RE  +L Y     G+ + +  I 
Sbjct: 122 VDHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +A++G ++   E  +V+ HIS LR+K+  N    + + + R  GY
Sbjct: 182 TAVWG-YEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGY 225


>gi|229823749|ref|ZP_04449818.1| hypothetical protein GCWU000282_01051 [Catonella morbi ATCC 51271]
 gi|229786788|gb|EEP22902.1| hypothetical protein GCWU000282_01051 [Catonella morbi ATCC 51271]
          Length = 218

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++G        G  +      +    L      D+  ++       +   
Sbjct: 3   LMIVEDEAAIREGVSEFLRSQGYFVWEAADGQEALDLFGEVSVDLVLLDIM--MPKKNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP++ ++     +  +  FD  VD  + KP     +  R+ A+ +R   
Sbjct: 61  EVLAEIRKTSTVPVLMLTAVADEEAQIKTFDLLVDGYIQKPFSLALLAKRIEALLKRHYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E    +V     +   +GEV     +E  +L+ L+ ++G+ +++ QI   ++   
Sbjct: 121 EFDIWEYKDSKVNFSSYEATYKGEVADTKPKELAVLKLLLDHQGQVLSRAQILDHVWANQ 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D+   + VV+ +I +LRK L    G D + + + +GY ++
Sbjct: 181 DDPPFDRVVDVYIKQLRKNL----GLDCIVTVKNVGYKLE 216


>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
          Length = 225

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         + D+  ++  L   G   ++
Sbjct: 6   LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLML--PGADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G I +   G       +V  L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++           +    +  +  ++      G   L
Sbjct: 26  ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVM--MPGMDGL 83

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R      P++ ++   ++   +   D+G DD + KP             +    
Sbjct: 84  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +   +       G + +  + RD    G    L R E  +L+ L+ N+ K + + Q
Sbjct: 144 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 204 ILEEVWGC-DFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 250


>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +  ++   ++ E   ++ S+ + D+  ++          L
Sbjct: 5   ILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIM--MPVMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +   +R  S VP++ ++     +  L  +D G DD + KP   + ++A+V A     R 
Sbjct: 63  TMLEKLREVSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRTRE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++  +   + +     + ++ G+   L  +E  +L YL+ N G  +++  I   ++G
Sbjct: 123 DLDSSFQDFNGLTINKLSHEVKIDGKEIILSPKEYELLMYLVTNEGIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +   V++++ +LR+KL +K     + + R  GY  + 
Sbjct: 183 I-DYYGDIRTVDTNVKRLREKLLDKSN--YIITVRGSGYKFEV 222


>gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 227

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +++   A    +G +++     E   ++      DV  I+  L    G  +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGMDL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R      + P++ ++   S Q+ ++    G DD + KP H  E+LARV A + R  
Sbjct: 63  VKALR--DEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E G + +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDADGDLKPIETVRGRGYRF 220


>gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 243

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54
            +L++D    +D        DG  +      +    +  ++R        D+  ++  L 
Sbjct: 10  ILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML- 68

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILA 110
                  E+   IR  S VP+I ++   +    +   + G DD V KP  +R     + A
Sbjct: 69  -PRLDGTEVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +                GP+R+  +  +  V GEV  +P RE  +LE  + N G+ + +
Sbjct: 128 VLRRSRDTGPELEPVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +QI   ++G  +   +   ++ H+ +LR ++  +      + + R LGY +D
Sbjct: 188 SQIIERLWG-PEYGGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRLD 238


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++             +   D+  ++  +       +E
Sbjct: 5   LVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMI--PVYTGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + +++R  S VP+I ++        +   + G DD + KP +        + + R +   
Sbjct: 63  VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNRK 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++ + 
Sbjct: 123 QAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLNT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G      +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 183 IWGDS-YPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFF 226


>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 227

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +++   A    +G +++     E   ++      DV  I+  L    G ++
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGMEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R      + P++ ++   S Q  ++    G DD + KP H  E+LARV A + R  
Sbjct: 63  IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 247

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD A ++    A    DG  +    +        ++    R D++ ++  L      
Sbjct: 6   LVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGL--PDLD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +RA S + +I ++        L     G DD + KP   RE++ARV  + RR 
Sbjct: 64  GLEVLRRVRAQSDLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVKTVLRRR 123

Query: 120 K--------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                             N      + +  D R+     +   L   E  +L       G
Sbjct: 124 HEAGAPDVGPDVDPATVANILRFEGLTIDEDRREVTTASDPVTLSTLEFDLLVAFAEAPG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++ Q+   ++G +D   +E V++ HI  LRK L  +      + + R +GY  
Sbjct: 184 RVFSRAQLLEKVWG-YDFYGDERVIDVHIRSLRKALADDASSPRVIGTVRGVGYKF 238


>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        ++ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 21  ILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR    +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 79  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 139 FNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 199 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 245


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A   ++G+  +          L      D+  ++          +
Sbjct: 119 ILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 176

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 177 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+               V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 297 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342


>gi|218699328|ref|YP_002406957.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI39]
 gi|218369314|emb|CAR17072.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI39]
          Length = 240

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233


>gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
 gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  +  G G +V
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   VP++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 65  IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMSTEDIIEMNGLVLDPTSHRVTSNEIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKALELDGHDKMVQTVRGTGYRF 225


>gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium]
          Length = 232

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ + IR     P+I ++             S  DD + KP +                R
Sbjct: 63  QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 + +      +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+ 
Sbjct: 182 ELFEAVWGERYFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|15893741|ref|NP_347090.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023306|gb|AAK78430.1|AE007559_8 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507864|gb|ADZ19500.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 227

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 97/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +   +   +S+E  + + ++ +  +  ++  L        
Sbjct: 4   ILLVEDDEALSMGIKYTLLSEKFEVIATSSIEEAKEVFNNEKISLVLMDLML--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R +S +P+I ++        +  FD G DD + KP   +E+++R+ A+ RR   
Sbjct: 62  DLCRELRKNSDIPIIFLTACDEEVNVVMGFDLGADDYITKPFKIKELISRIKAVLRRCSS 121

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +E       +           +   L   E ++L   + N G+ + +  I   ++ 
Sbjct: 122 REEVSELKSRDVLIDKRTLKAYKNDKEIVLTHMELKLLILFIENSGQTLKRNLILQRLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +E V++N +  +I +LR+KL+       + + R +GY  +
Sbjct: 182 ISEEFVDDNTLSVYIKRLREKLKEDSKNPYIVTVRGIGYRWN 223


>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 228

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + D        +G   +  ++ E    +      D+  ++           E
Sbjct: 5   LVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVM--MPKLDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R +R  S +P+I ++        +   + G DD V KP   RE++ARV A  RR +V 
Sbjct: 63  TLRELRKFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRREVE 122

Query: 123 NNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               E           +       + +G+   L  RE  +L++L  N GK  ++ ++ S+
Sbjct: 123 VKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELLSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +    +  + + R +GY  
Sbjct: 183 VWG-YEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGYYF 226


>gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++    +   +G         +      S    D+  ++  L  G G ++
Sbjct: 5   ILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGSGIQL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P+I ++     +  +   D G DD + KP   +E++ARV A+ RR+ 
Sbjct: 65  IKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +         QG    +   E ++L + M +  +  ++ Q+   ++
Sbjct: 125 PMEAEEVINMDGLILDPSSHRVSSQGLDLNMGPTEFKLLHFFMTHPERVYSREQLLDYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGKHDKMVQTVRGTGYRF 225


>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
 gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP            ++     
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + DV  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIML--PGVDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ + + +    + +I ++        +   + G DD + KP +       I A +  + 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
 gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
          Length = 229

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           ++  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +           ++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALDDVIDVQGLKLDPVSHRVTSDDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESGGHDKMVQTVRGAGYRF 225


>gi|15866137|gb|AAL10207.1|AF410884_3 MtrA [Mycobacterium avium subsp. paratuberculosis]
          Length = 225

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|320333505|ref|YP_004170216.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754794|gb|ADV66551.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 226

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +   A    +G   E          L  +AR D+  ++  L   G   
Sbjct: 4   LILIVEDEPHLAEILEAYARQEGFRTERAADGNTAMTLFHAARPDLILLDLML--PGRSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
           L++ R +RA  +  +I ++        +   + G DD V KP   RE++ARV        
Sbjct: 62  LDVLRSVRAEGRTGVILVTARAEETDQVVGLELGADDYVVKPFRPREVMARVRAVLRRTQ 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L+  +     G + V +      V G    L   E R+L +L +  G+   + ++   
Sbjct: 122 EALEPLSAPTRVGALEVDTRAVSVRVHGAPLSLTPAEFRLLAHLASAPGRAFTREELLEG 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              L D    E VV++H++ +R+KL        + + R +GY +
Sbjct: 182 A--LPDSDAMERVVDAHLTSVRRKLEANGAPGLLHTVRGVGYRL 223


>gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +           D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +         +     +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 14/228 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   + D        +G  +      E    +  +   D+  ++          L +
Sbjct: 6   VVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIM--MPKMDGLSV 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            +++R    +P+I ++        +   + G DD + KP   RE++ARV A  RR     
Sbjct: 64  CKLVRKTKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTSHE 123

Query: 124 NRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 P+   +             +    G++  L  RE  +L++L   +GK   +  +
Sbjct: 124 EIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTREIL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G F+   +   V+  + +LR+K+ +       V +KR +GY  
Sbjct: 184 LEKVWG-FEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYF 230


>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 226

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D+   V+D    L  ++G +++          + S     + +++  L   G    
Sbjct: 6   ILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVML--PGLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I ++        L  F+ GVDD + KP   +E++AR+ A+ +R  +
Sbjct: 64  TVCKKIRERSNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRANI 123

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +T  IR+    R+  +  +   L  +E  +L + +  + +   + ++ + +
Sbjct: 124 IPLSEESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   +   V++HI ++R+KL        + +   +GY  
Sbjct: 184 WG-YDFYGDLRTVDTHIKQIREKLGEY--KKYISTVWGVGYKF 223


>gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +        +G S++   S +           D+  ++  L        
Sbjct: 4   ILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPI--VDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---------NKPIHHREILARV 112
           E+ + +R    +P++ +S        +     G DD +            +         
Sbjct: 62  EICKQVRKVKNIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARYDR 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +   +        IR+    R   + G       +E  +L +L+ +     +KT+
Sbjct: 122 LVSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSKTE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F  I+GL D   +   V  HISKLR+K+  +      +++   +GY  
Sbjct: 182 LFEKIWGL-DSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGYRF 229


>gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8]
 gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 4/217 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V     A   + G  ++   +           + D+  ++  L        
Sbjct: 4   ILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGL--PDLDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   ++   +     G DD + KP H  E+      +  R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAEL-LARIQVQLRHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R    +     L  +E  +L  LM+  G+   + +I   ++G  
Sbjct: 121 GSEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               + NV++ H++ LR KLR    +  + + R +GY
Sbjct: 181 -LGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   + +  +  F  +G S+      E    L      D+  ++  +    G +V
Sbjct: 6   LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R     + VP+I ++     +  +   ++G DD V KP   RE+           R
Sbjct: 66  CRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++        I + S        G+V  +   E R+L + M + G+  ++ Q+  +++
Sbjct: 126 PALAGEMLSYADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  +E   V+ HI +LRK +      D + + R  GY++D
Sbjct: 186 GQ-DSDIELRTVDVHIRRLRKAINLPGTSDIIRTVRSAGYALD 227


>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
 gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
          Length = 237

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + D  +      G         +    L  + R D+  ++  L   G +  
Sbjct: 6   ILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLML--PGLEGW 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R        P+I ++        +    +G DD + KP    E++ARV A  RR
Sbjct: 64  EVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRR 123

Query: 119 LKVSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++   AE           +     + G    L   E +ILE L +  G+ V++ +I +
Sbjct: 124 RSMARQDAEETKDERIVLDQETGVVRIDGWEAELSPTEFQILELLASRPGRPVSRDRITA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++GL     E   +++H+S+LRKKL        + + R  GY ++W
Sbjct: 184 VVWGLD--PAESRALDTHLSRLRKKLSGCPDGPEITTLRSRGYRLEW 228


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 21  ILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR    +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 79  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 139 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 199 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 245


>gi|296135605|ref|YP_003642847.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795727|gb|ADG30517.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 365

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G +++     +      +        ++  L   GE  L
Sbjct: 130 ILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLML--PGEDGL 187

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P++ +S        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 188 ALARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQP 247

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                  GP  + +        G+   L   E  +L+ ++A+  + ++
Sbjct: 248 TSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLS 307

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + Q+   + G ++    +  ++  +++LR+K+ +       V + R  GY  +
Sbjct: 308 RDQLIDWLKG-YERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLFN 359


>gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
 gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
          Length = 243

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++   ++ E    + ++    ++ ++          +
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A     +        +    R  ++ G+   + + E  IL  + A + +     +I
Sbjct: 135 FNQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +++         N V  HI++LR K+         + +   +GY I
Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241


>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +   +          S   ++  ++          L
Sbjct: 3   ILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVM--MPNMDGL 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R+      I  ++    +   +   D+G DD + KP             +    
Sbjct: 61  EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A        S  +     + + +D R+ +       L R E  +L+ LM +  K +++  
Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I   ++G +D     N +E +I  LRKK         + + R +GY +  N
Sbjct: 181 ILEEVWG-YDFPSSGNALEVYIGYLRKKTEGGGESRLIHTVRGVGYVLREN 230


>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E       S + ++  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
           E  + IR  + +P+I ++   S Q  +  F SG DD + KP    E+             
Sbjct: 63  EAIKRIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  +   + +         +     L  +E  IL  L  N+G+    ++I+  
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228


>gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +    + +           D+  ++  +    G + 
Sbjct: 8   ILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R +       ++ ++      + +  F+ G DD + KPI  R +++R+ AI RR  
Sbjct: 68  CRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILRRNL 127

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +  I      +  D       GE   L ++E  +L  L +  GK   +  I  
Sbjct: 128 QGEEETFSNKIEIADLVIDRDAFLVFKGGEKIVLAKKEFELLYLLASKPGKVYTREVILR 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I+      V    ++ HI KLR+KL++    + V + + +GY  + 
Sbjct: 188 NIW-EDSVVVTNRTIDVHIRKLREKLKD----NYVTTVKGVGYKFEV 229


>gi|229110657|ref|ZP_04240221.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228672725|gb|EEL28005.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLEKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
 gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++    +         S   D++ ++          L
Sbjct: 5   ILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR   + P+I ++        +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  ELCRNIREQYRYPVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +      + +     +  +  +   L   E  IL  L   +G+ V+  ++F
Sbjct: 123 YNTGAGPDEDVIVHSGLVINVRTHECTLNEKPLSLTPTEFSILHILCRKKGEVVSSEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+         N +  HI  LR+K+ +       + +    GY I+
Sbjct: 183 HEIWNDEYFTKSNNTITVHIRHLREKMGDSFEDPKYIKTVWGCGYKIE 230


>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  +      G       + +    L    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++     +  P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S +  E G + +        + G+   +   E R+L++ M ++ +   ++Q+   
Sbjct: 124 ATPVDSESPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI]
 gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + +     ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIFCVEDDDNIRELVIYTLETTGLEARGFADGTAFMEALAFDTPELVLLDIML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115
           LE+ + ++  S    +P+I ++   S    +   DSG DD V KP    E+++R+ A   
Sbjct: 59  LEILKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    +   G I + +   + +V GE   L  +E  +LE LM N+G  + + Q+ +
Sbjct: 119 RSGKQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRDQLLT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ HI  LR+KL  +     V + R +GY I
Sbjct: 179 EIWG-YDFDGETRTVDVHIRTLRQKLGEQGS--LVKTVRGVGYRI 220


>gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G ++    S      L +S   DV  ++  L        
Sbjct: 8   ILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGL--PDMDGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
           EL R +    +  +I +S     +  +   D G  D + KP         I   +     
Sbjct: 66  ELLRTLPVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRRGGS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +R   G + +  +     ++GE   L   E ++L YL  + GK V  +Q+   +
Sbjct: 126 DGESPPSRYTFGELSLDLEAHVASLKGEDLHLTPTEFKLLAYLARHAGKVVTHSQLLREV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      +E+ V  HI KLR+K+  +      + ++  +GY +
Sbjct: 186 WGK-QSQGQEHYVRIHIHKLRQKIESDPARPRYLHTETGIGYRL 228


>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D            +E  N  +           D+  ++  L   G    
Sbjct: 5   ILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLML--PGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQIRDQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N              ++ +  R   V GE      +E  +L +L ++      K ++F
Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +G  +      E           D+  ++  L    G +V
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLSGIEV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++        +   D+G DD + KP    E+ AR+ A+ RR++
Sbjct: 65  CRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRIR 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++R     I +          G    L   E R+L++ + + G+  ++ Q+  A++
Sbjct: 125 PGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G  D  VE   V+ H+ +LRK L  +   +P+ + R  GYS+D N
Sbjct: 185 G-SDVYVEARTVDVHVGRLRKALNVEGTVNPIRTVRSAGYSLDLN 228


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D  +   G  G +++        +   +  R D+  ++      GE  L
Sbjct: 6   ILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVM--MPGEDGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + R +RA  ++ P+I ++        +   + G DD + KP + RE             
Sbjct: 64  AVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHN 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +  E GP  +    R+   Q +V  L   E  +L  L ++  + + + 
Sbjct: 124 ATPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+     G  +    +  ++ HIS+LR+ L  ++ G   + +    GY  
Sbjct: 184 QLMEMALGKGNGESLDRSIDVHISRLRRALDTDEGGPRYIQTVWGYGYVF 233


>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
 gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           130b]
          Length = 226

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G ++   +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+       ++
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       E   I V    R   + G+   L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G       +  ++ HIS LR KL +   G   V + R  GY  +
Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMFN 225


>gi|310780606|ref|YP_003968937.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749929|gb|ADO84589.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 221

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         DDG +++  +  +    +    + D+  ++  L    +   
Sbjct: 5   ILIVEDEKELALIIGKSMEDDGFNVKIAHDGDKAMEIFYDDKPDLVLLDINL--PKKNGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S +P+I ++   S    +   + G DD + KP      L  V         
Sbjct: 63  EICKEIRAVSNIPVIMMTARDSELDEIQGLELGADDYITKP--FSLKLISVKVKKLLKLE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +          + GE   L RRE   LEY   ++G  +++  + + I+G F
Sbjct: 121 RDTFFRIKDLTFDFKSYILTIDGETIDLSRREAHALEYFFKHKGIILSREILLNEIWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   +E  V++ I +LRKKL      D + S R +GY  + N
Sbjct: 180 DFFGDERAVDTLIKRLRKKLGKYS--DYIKSIRGVGYVFNEN 219


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++             +      E    L    + D+S +   ++        
Sbjct: 7   LVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEK-DISLLILDVMMPKMDGWA 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + + IR HS+VP+I ++        L  F+ G D+ ++KP   + ++ARV A + R    
Sbjct: 66  VLKSIREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSGIQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I +        V G+   L  +E  +L Y + NRG  +++ +I + ++  +
Sbjct: 126 QEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVW-NY 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   +++H+ KLR KL++K   + + +   +GY  D
Sbjct: 185 DYFGDARTIDTHVKKLRAKLKSKG--EYIRTVWGMGYKFD 222


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L        
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+ R ++      ++ ++   S+   +   D G DD + KP              R   I
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     +    +++    R      E  PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+A+E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVI 226


>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|104773776|ref|YP_618756.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513782|ref|YP_812688.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|300812476|ref|ZP_07092902.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|103422857|emb|CAI97517.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093097|gb|ABJ58250.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300496537|gb|EFK31633.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325125438|gb|ADY84768.1| Response regulator [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 241

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V       F  +G         E    +  +   D   I   L    +  +
Sbjct: 3   ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNK--------------PIHHR 106
           ++ + IR  S+  P+I ++   S    +     G DD V K                   
Sbjct: 63  QVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRRVM 122

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                            +          S       +  V  L  +E  +L  +     +
Sbjct: 123 LEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPKQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K G   + +   +GY  D
Sbjct: 183 VFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235


>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
           DJ]
 gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
           DJ]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    R D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     + +PLI ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +N         R+        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TAPGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|326334181|ref|ZP_08200404.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325947972|gb|EGD40089.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 235

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G   +     +       S + DV  ++  L   G   +E
Sbjct: 16  LVVDDDASLSEMLAIVLRQEGFDSQLVARGDLALPAFHSYKPDVVLLDLML--PGMDGIE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR   S
Sbjct: 74  VCKQIRKESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELIARIRARVRRHGES 133

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G      GE   L   E  +LE L     +  ++  +   ++G +
Sbjct: 134 LPEILEIGDLTIDVAGHQVTRGGEQIQLTPLEFDLLECLARKPHQVFSREVLLEQVWG-Y 192

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 193 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 231


>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 246

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +  E      +S    +  ++  L        
Sbjct: 16  ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLML--PKVDGF 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R +R  S+VP+I +S   S    +     G DD + KP    E+        R    
Sbjct: 74  EVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHR 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  LK          + + ++ R  E  G+   L  +E  +L  L    G+  +K Q+++
Sbjct: 134 YNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYN 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   D   +   V  HI  +R+KL +       +D+   +GY  
Sbjct: 194 RVWKQDDAD-DIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238


>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 223

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    +      L      D+  ++           
Sbjct: 4   ILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---ARVAAIYRR 118
                IR     P++ +S        +  F+ GVDD V KP   +E++     +    R+
Sbjct: 62  STCHEIRKICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKRTRK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++      + +       E+ G+   L  RE  +L Y++ N+   +++ ++   ++
Sbjct: 122 AETESDAFIYERLSINFAAHTVEIDGQRIDLSPRESDLLFYMVRNKNIALSRDKLMQEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++H+  LRKKL+       + + R +GY  +
Sbjct: 182 G-YDFYGDDRTLDTHVKLLRKKLKEYS--RLIVTVRGVGYRFE 221


>gi|317500101|ref|ZP_07958336.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087672|ref|ZP_08336599.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898586|gb|EFV20622.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330410364|gb|EGG89797.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G       S      +    R  V  ++  L   G    E
Sbjct: 8   LIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLML--PGIPGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR     P+I ++   ++   ++F   G DD V KP   +E+ ARV    RR + +
Sbjct: 66  VLRDIRKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E           +               + ++E  ILE L+ +  K  +K ++F  
Sbjct: 126 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 186 AW-EEQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 228


>gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
 gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +   N+ E    L  S   D+  ++           
Sbjct: 4   ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIM--MPKMDGH 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            L   I+      P + +S     +  L     G DD ++KP   RE++ RV       +
Sbjct: 62  TLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRSK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R   V  E   L  +E  +L  L +   +  +K+++   ++
Sbjct: 122 RSSEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           G ++   + N +  HI  LR+KL+        + +   LGY  +
Sbjct: 182 G-YEYDGDANTINVHIHHLREKLQANDEKVIFIKTVWGLGYKFE 224


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   +          +G   E  +       L    + D   ++  L G  G  V
Sbjct: 5   ILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLTV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
             L +   A S  P++ ++        +   + G DD + KP H +E++ARV        
Sbjct: 65  NRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRRE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    R   GP+ +     +   +G   PL  +E  +L  LM   G+ + +  + + +
Sbjct: 125 TQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNTV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D    +  V+ HI +LRKK+        V++ + +GY  
Sbjct: 185 WG-DDYEGTDRTVDVHIRRLRKKMGESAA--WVETVKQIGYRF 224


>gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +    + +    +      D+  ++  +    G + 
Sbjct: 8   ILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
             L R I       ++ ++      + +  F+ G DD + KPI  R     I A +    
Sbjct: 68  CRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRNS 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               VS+N+ E G + +  +       G+   L ++E  +L  L +  GK   +  I   
Sbjct: 128 STDDVSDNKVEIGDLVIDREAYLVYQNGQKVVLAKKEFELLYLLASKPGKVYTRESILKN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+      V    ++ HI KLR+KL        V + + +GY  +
Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKLGET----YVATVKGVGYKFE 227


>gi|261340522|ref|ZP_05968380.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
 gi|288317617|gb|EFC56555.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
          Length = 240

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAAGYAPTLINHGDHVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV       R 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +         P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWE 233


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +              +   D+  ++  L   G    
Sbjct: 4   ILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P+I +S   +    +  F  G DD + KP    E++ARV A   R + 
Sbjct: 62  NVCRRLREELDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +    R+                 GE   L  RE  +L +LM NRG   ++  +F
Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   +   V  HI+++R+K+  +      +++ R  GY  
Sbjct: 182 ERIWGL-DAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGYRF 227


>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + +  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTKYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 228

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +       F  +G  +   +       L      D++ ++  L        
Sbjct: 5   IAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVML--PQLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           E+ R +R    +P+I ++        L   + G DD V KP   RE++ARV        +
Sbjct: 63  EICRKLRKEGNIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRRSGK 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +++    G + +       ++      L   E ++L  L +N  +  ++ QI   I
Sbjct: 123 GTEDTSDVITAGRLAIDRTRHVVKIDDIPLELTPTEFKLLALLASNPERVFSRLQIIEHI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +     E  V++H+  LR+KL +      + +   +GY  
Sbjct: 183 QG-YSFEGYERTVDAHVKNLRRKLGDA---QYIQTVYGIGYKF 221


>gi|50955386|ref|YP_062674.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951868|gb|AAT89569.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +    L   +G  +E                 D+  ++  L   G    
Sbjct: 4   ILLVEDEAALSEPLAYLLKREGYEVEVAEDGPTALADFDRLGADLVLLDLML--PGIPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 62  EVCREIRTRSSVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSSRELLARVRAVLRRRVD 121

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              R +      G +R+  D     V G    +P +E  +LE L+ N G+ + + Q+   
Sbjct: 122 EAEREDDGVLETGAVRMDVDRHTVAVNGAEISMPLKEFELLELLLRNAGRVLTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ HI ++R ++         + + R LGY  +
Sbjct: 182 VWG-SDYFGDTKTLDVHIKRIRSRIEESPSDPQMLVTVRGLGYRFN 226


>gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
 gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           ++  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGGHDKMVQTVRGAGYRF 225


>gi|254776645|ref|ZP_05218161.1| DNA-binding response regulator MtrA [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|45645201|sp|Q93CB8|MTRA_MYCPA RecName: Full=DNA-binding response regulator mtrA
 gi|61228246|sp|P0A5Z4|MTRA_MYCTU RecName: Full=DNA-binding response regulator mtrA
 gi|61228247|sp|P0A5Z5|MTRA_MYCBO RecName: Full=DNA-binding response regulator mtrA
 gi|509815|gb|AAB07804.1| MtrA [Mycobacterium tuberculosis H37Rv]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E  +       +      D+  ++  L       +
Sbjct: 5   ILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIML--PSMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R +R  S +P+I ++        +   D G DD V KP        R  +A    I 
Sbjct: 63  EILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++N  +   + +  +      + E   L ++E  +L YL+ N+ K +++ +I   
Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G FD   + NVV+ +I  LR K+ +K     + + R +GY 
Sbjct: 183 VWG-FDYFGDTNVVDVYIRYLRSKIDDKYKEKYIYTVRGVGYV 224


>gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEADPKEPKFIQNVWGVGYKIE 241


>gi|330897348|gb|EGH28767.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 SSETHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD + + +        +G  +E     +         +  +  ++  +    G +  
Sbjct: 10  LVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDGVETC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R     +   +I ++      + +  F++G DD + KPI  R +++R+ A +RR   
Sbjct: 70  RQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFRRDVK 129

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    I    +        V G+   LP++E  +L +L  N  K   +  +   I+
Sbjct: 130 KQKDNNKITIGGLTIDRTSYTVSVDGKQVSLPKKEFELLYFLAQNPNKVFNRDDLLQNIW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V    V+ H+ K+R+K+ +      + + + +GY  D
Sbjct: 190 G-SDVYVLARTVDVHVRKVREKVGD----GYISTVKGVGYKFD 227


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
           ATCC 13950]
          Length = 239

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++      G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +    +      + +     +  ++      G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIM--MPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +          H     +
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYTQ 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +         +NN      + +  D     V  E   L   E  IL  L +N GK  +  
Sbjct: 124 LNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +IF  ++         N V  HI +LR K++        + +   +GY I+ 
Sbjct: 184 EIFERVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38]
 gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +   ++ +    +       +  ++  +    G + 
Sbjct: 8   ILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMPEMDGMEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-----AI 115
            E+ R         +  ++      + +  FD+G DD + KPI  + ++++V        
Sbjct: 68  CEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQALLRRFK 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S+     G I +  +      +G    LPR+E  +   L    GK   + +I  
Sbjct: 128 DSEGSSSSTTLNVGNIEINREEYKIVKEGVEIILPRKEFELFYLLATKPGKVFTREEILD 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  +  V    ++ HI KLR+K+ +    D   + + +GY I++
Sbjct: 188 KVWGN-EVVVGGRTIDVHIRKLREKIGD----DFFKTIKGVGYKIEF 229


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +   +      E    +    + +++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEK-NIALIILDVMMPKMNGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR+  
Sbjct: 65  EVCREIRETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRIGK 124

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +    G I +        V G    L  +E  +L Y M N G  +++ +I + ++
Sbjct: 125 APEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   +   +++H+ KLR K+  K   D + +   +GY  +
Sbjct: 185 -NYDYFGDARTIDTHVKKLRAKIGEKG--DYIKTIWGMGYKFE 224


>gi|46199299|ref|YP_004966.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196924|gb|AAS81339.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 4/217 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V     A   + G  ++   +           + D+  ++  L        
Sbjct: 4   ILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGL--PDLDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   ++   +     G DD + KP H  E+      +  R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAEL-LARIQVQLRHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R    +     L  +E  +L  LM+  G+   + +I   ++G  
Sbjct: 121 GSEVLAVGQLELYPRKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               + NV++ H++ LR KLR    +  + + R +GY
Sbjct: 181 -LGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216


>gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G         +      S    D+  ++  L  G G ++
Sbjct: 5   ILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGSGLQI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++ARV A+ RR+ 
Sbjct: 65  IKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLRRIS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         + S       + +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMVMEDIIEMDGLVLDSTSHRVTSRDKALDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKVLEIGGHDKMVQTVRGTGYRF 225


>gi|312867423|ref|ZP_07727632.1| putative sensory transduction protein RegX3 [Streptococcus
           parasanguinis F0405]
 gi|311097124|gb|EFQ55359.1| putative sensory transduction protein RegX3 [Streptococcus
           parasanguinis F0405]
          Length = 217

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +      +    L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGYEIFEAGDGQEALDLFHKEAPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP + ++ +      L  F    D    +      +L        +   
Sbjct: 61  EVLKTIRKTSSVPGLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++++        +G  +                + D+  ++           
Sbjct: 4   LLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  +  P++ +S        +  F+ GVDD V KP   +E++ RV AI +R KV
Sbjct: 62  SACREIRKFTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKRGKV 121

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +      ++V  D R   + G+   +  +E  +  Y++ NRG  +++  + S 
Sbjct: 122 KEEAASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRENLISN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   ++  +++HI  LRK L        + + R +GY  + 
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRKSLGEY--ARLIVTLRGVGYRFEE 224


>gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 230

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    DG  +                R DV  ++  L   G   +E
Sbjct: 6   LVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLAL--PGLDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  +   ++ ++        L     G DD + KP   RE++AR+ A+ RR + +
Sbjct: 64  VCRQIRTFTDCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAMLRRPRAA 123

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A     R          GR+  V  +   L R E  +L  L A     + + Q+  A
Sbjct: 124 VAPAAEQSTRTVGGLRVDLAGREVYVDEQPVELTRTEFDLLAALSAQPDTALRRRQLIDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G  D   +E++V+ HI+ LR+KL +   G   + + R +GY +
Sbjct: 184 VWGA-DWVGDEHLVDVHIAHLRRKLGDDPAGPRFIRTVRGIGYRM 227


>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G      ++      L  +    +  ++          +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E    IR    +P+I +S        +    +G DD + KP +          ++   + 
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +      I +     + ++  +   L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  ++   +     N V  HI KLR+K+         + +   +GY ++ 
Sbjct: 184 YELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232


>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A     + 
Sbjct: 63  NVCERIRRESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N      + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQRENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
 gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
 gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
 gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
 gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
 gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
 gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
 gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
 gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
 gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
 gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
 gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
 gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
 gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
          Length = 219

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL      + + + R +GY ++ 
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  ++          L       +  ++      G    
Sbjct: 9   ILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIM--MPGMDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           E+ R+++    V +I ++    ++  +     G DD + KP    E+LAR+   I  +  
Sbjct: 67  EVCRMLKKSENVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQFP 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP R+    ++ + Q +V  L   E  +L++L+ N+G  ++KT I   ++G 
Sbjct: 127 TLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D A ++N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGDK-EHRLIRTLRGSGYRMD 225


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       ++  S+         +         ++ ++  L        
Sbjct: 4   ILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVML--PDITGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +IIR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 62  DLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N   +   I        + R   +Q E   L   E  IL+ LM  +G+ V+  ++F  +
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G        N +  H+  LR+K+ +       + +   +GY I
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225


>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
 gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRNVKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   NN  E   +++ +  R   V GE      +E  +L +L ++      K ++F
Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRF 227


>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G  +   N           +  D+  ++      G   +
Sbjct: 8   ILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWM--MPGLTGV 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P+I ++    ++  +   D+G DD V KP    E+LARV A  RR +
Sbjct: 66  EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  +       +    R+      +  L  +E  +L+YL+++  + + + +I   ++G
Sbjct: 126 PEDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL  +     + + R +GY +
Sbjct: 186 -YDFMGDSNIIEVYIRYLRLKLEAENESRLIQTVRGVGYVM 225


>gi|206974598|ref|ZP_03235514.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206747241|gb|EDZ58632.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADMITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|157693741|ref|YP_001488203.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682499|gb|ABV63643.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +      +   +G     + +   +E L     ED+  +   ++  G+   
Sbjct: 6   ILIADDEEAIVKMVERVLKKEGFK-HIYKAYHADEALDVVKNEDIHLLLLDVMMPGKSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  ++ P+  ++   S    L  F  G DD + KP +  E++AR+ A   R  +
Sbjct: 65  DVLPEMRKFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTYI 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S    +      +                  EV     +   +L+Y   +    ++K QI
Sbjct: 125 SLKEDQDEAQSPYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G+     + N V  HI KLR+K+  +    + + + R +GY  
Sbjct: 185 YEKVWGVPSY-GDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231


>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 233

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59
            ++++D   +++  +      G        +          R  +  ++  L G   G  
Sbjct: 6   ILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGNQSGID 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +    +     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR 
Sbjct: 66  LCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRS 125

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +           +    +     G    +   E R+L + M++  +   +TQ+   +
Sbjct: 126 SALSGDKPIEAEGLSLDPVSQRLSADGTPLEIGPTEYRLLAFFMSHPERAYTRTQLLDQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  ++ HI +LRK L      + + + R  GY  
Sbjct: 186 WG-GNVYVEDRTIDVHIRRLRKVLEPYNYAEFIQTVRGTGYRF 227


>gi|320008511|gb|ADW03361.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 219

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +       L      D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLATSLARGLTAEGFAVDVVHDGLEGLHLAGQGVYDLVVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RICAALRAAGHETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +   T    R+ +  R      +   L  +E  +LE L+   G+ V+K  I   ++ 
Sbjct: 121 GSASPVLTAGTLRMDTAARRVHRGEDEVTLTTKEFAVLEQLVRRAGEVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE +IS LR+KL        + + R  GY ++
Sbjct: 181 -FAYDGDPNIVEVYISTLRRKLGAAA----IRTVRGAGYRLE 217


>gi|152971070|ref|YP_001336179.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955919|gb|ABR77949.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 240

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQALDARSPLIVDESRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    L      D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWML--PKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A + R  
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
          Length = 241

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +   +++  ++ +    L      D+  ++  L       
Sbjct: 7   ILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIML--PDISG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR H+  P+I +S   +    L     G DD + KP +  E++AR+  I RR K
Sbjct: 65  FELCTEIRKHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124

Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +  +    +                   ++     +E  +L +   N  +    +Q+
Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  ++G  D   EE  V  HISKLRKKL +       + + R +GY  
Sbjct: 185 YEFVWGN-DVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 231


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++       G +G ++           +    +E ++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKE-IALVILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R IR  SQ P+I ++     +  L  F+ GVD+ +                     +
Sbjct: 65  QVCREIRQSSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSHV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G I++     + + +G+   L  +E  +L Y + N G  +++ +I + ++ 
Sbjct: 125 LGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K     + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKGN--YIKTIWGMGYKFEV 224


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +S E    + S+ R D++ I+  L     + +
Sbjct: 6   ILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGL--PDMEGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQ+P+I ++   + +  +   D+G DD V KP    E+    RVA  +   
Sbjct: 64  EVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAAR 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    R  E+ GE   L   E  +L+ L  N GK V + Q+   ++G
Sbjct: 124 VQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             D     + +  +I  LRKKL +       + ++  +GY +
Sbjct: 184 DVDPDNAAHYLRVYIGHLRKKLEDDPSRPWRIVTEPGVGYRL 225


>gi|310643897|ref|YP_003948655.1| two-component response regulator, potential cognate sensor kinase
           is yxdk [Paenibacillus polymyxa SC2]
 gi|309248847|gb|ADO58414.1| Two-component response regulator, potential cognate sensor kinase
           is YxdK [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G      ++ +    +    + D+  ++  L        
Sbjct: 4   ILIVEDDPQISSLLQSYLEKYGYQGVVVSNFDQVLGVFQKVKPDLVILDVNL--PRFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR  S  P++ +S        +    +G DD + KP H   +        R A  
Sbjct: 62  YWCRQIRTQSTCPILFVSARDDKMDQVIALQNGADDYITKPFHPEVLLAKVESNLRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   +       + ++ D  +     +   +  +E  +LE LM    + V +  +  
Sbjct: 122 LYAVAQKSRTITVSGLTLYPDTMELVFHDKQVEMSHKEAALLELLMTYPKQVVGRVHLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++  +   V EN +  +++++RKKL      D +++ R  GY +
Sbjct: 182 ALWDDYQY-VGENTLNVYVTRVRKKLSELGLEDIIETVRGAGYRL 225


>gi|296138804|ref|YP_003646047.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026938|gb|ADG77708.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +    +  ++G                   R D+  ++  L   G   +
Sbjct: 8   ILVIDDDPALAEMLTIVLRNEGFDSMVVGDGTQALGAAREFRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR   
Sbjct: 66  DVARVLRADSNVPIVMLTAKADTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRTAD 125

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +          GEV PL   E  +L  +     +   +  +   ++G 
Sbjct: 126 EPSELLSIGNVIIDVPAHKVTRDGEVVPLTPTEFDLLVTMARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  HI +LR K+  +    + V + R +GY 
Sbjct: 185 YRHPADTRLVNVHIQRLRAKIEKDPENPEIVLTLRGVGYK 224


>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
 gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
          Length = 242

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP            ++     
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 289

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +         +    D+  ++  L       +
Sbjct: 65  ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 122

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR K 
Sbjct: 123 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 182

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +                      V  L  +E  +L YL+ N  +  ++ Q+ 
Sbjct: 183 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 242

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 243 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 289


>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
 gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
          Length = 225

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       ++  S+         +         ++ ++  L        
Sbjct: 4   ILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVML--PDITGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +IIR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 62  DLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N   +   I        + R   +Q E   L   E  IL+ LM  +G+ V+  ++F  +
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G        N +  H+  LR+K+ +       + +   +GY I
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGIE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           + + +RA     P++ +S        +   + G DD + KP   R               
Sbjct: 64  VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++++    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +          +G  +           L  S   D+  ++  L       +
Sbjct: 5   ILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVML--PSLNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IRA    P+I I+   S+   +   D+G DD + KP    E+    R        
Sbjct: 63  EVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + V    R  +       L +RE  +L   M N    + +  +   ++G
Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ ++  LR+KL        + + R  GY +
Sbjct: 183 -FDTEVETNVVDVYVRYLRQKLDEHNKERYIQTVRGAGYVM 222


>gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
 gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
          Length = 228

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L +D  ++ +G        G +++   S    +   ++   D+  ++  L    G  V
Sbjct: 3   ILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLPKLPGIDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R     S +P++ ++    ++  +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 63  LKRLRA--RKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +      R  ++ G+V  L  RE  +LE      G+ V+K QI   + G 
Sbjct: 121 GQPRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKKL +      + + R LGY ++
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG--VRIVTVRGLGYCLE 218


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++       G+ G +     S      +  +   D+  ++      GE   
Sbjct: 4   ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIM--MPGEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
           E+   IR  S VP+I +S        +     G DD + KP         +  V      
Sbjct: 62  EVCSRIRGKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTGG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK   +  + G I +    R   V G    L  +E  +L + + ++ + +++ Q+   I+
Sbjct: 122 LKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D       V++HI  LR KL      D + +   +GY  + 
Sbjct: 182 GI-DYTGSLRTVDTHIKTLRMKLGV---GDYIQTVWGVGYKFEV 221


>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    L      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|237732127|ref|ZP_04562608.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
 gi|226907666|gb|EEH93584.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
          Length = 240

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDLVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +         P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDTEQSFIRAVYGVGYRWE 233


>gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
 gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +    L      D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSDTQPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 225


>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 252

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +E  N  E           D+  ++  +   G   LE
Sbjct: 20  LVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMP-PGIDGLE 78

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REI 108
           + R +R +     +P++ ++    ++  +    +G DD + KP              R  
Sbjct: 79  VCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRRQ 138

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
               +        + N  E   +R+ +  R+    G +  L   E  +L   M++  + +
Sbjct: 139 GRTKSPQGAAGAENGNMLEFEDLRMNTATREVTRAGRLIELTATEYNLLHLFMSHPRQVL 198

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  I   ++G ++   E N++E ++  LR+K+ +       + + R +GY +
Sbjct: 199 DRQTILQRVWG-YEFLGETNIIEVYVRYLREKIEDSPSTPRLIQTVRSVGYVL 250


>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
 gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++         +G  +      E    +  + +  ++  ++          
Sbjct: 6   ILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVM--MPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            ++ R IR HS VP+I ++     +  L  F+ GVD+ V+KP   + ++ARV AI  R  
Sbjct: 64  WQVCREIRRHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRRSG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS++  E G I++     +  + G    L  +E  +L Y M N+G  +++ +I + ++ 
Sbjct: 124 AVSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNNVW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   +++H+ KLR K+ +K   D + +   +GY  +
Sbjct: 183 NYDYFGDARTIDTHVKKLRAKMGDKG--DLIKTIWGIGYKFE 222


>gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803]
 gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803]
          Length = 242

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++ R  ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNRNDAQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+       + + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPEFIQNIWGVGYKIE 241


>gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
 gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
          Length = 244

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  +  G G +V
Sbjct: 20  ILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   VP++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 80  IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 139

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 140 PMATEDIIEMNGLTLDPTSHRVTSNDIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 200 GA-NVYVEDRTVDVHIRRLRKALETEGHDKMVQTVRGTGYRF 240


>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
          Length = 220

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL      + + + R +GY ++ 
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218


>gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 247

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  +
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDGFTI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRAD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     E   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGSLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRRPRYIKTVYGAGYCLE 230


>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
 gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D  S+  F + +         + D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIML--PDIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A+     +            +         L   E  IL  L  NRGK ++  ++F
Sbjct: 121 YNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 181 EKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVEE 229


>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  +      G       + +    L    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++     +  P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E G + +        + G+   +   E R+L++ M ++ +   ++Q+   
Sbjct: 124 ATPVDSEAPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G +     +G  ++             S   DV  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVML--PEYTGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++        +   + G DD + KP +  E+ AR+ A+ RR    
Sbjct: 64  VCQIVREFSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRRSIQE 123

Query: 123 NNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +            + +   +      L  +E  +LE    +RGK   + Q+  +I+
Sbjct: 124 KETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLLDSIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G      +   V+ H+ +LR+K+  N    + + +K  +GY  
Sbjct: 184 GKG-YPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYF 225


>gi|154506023|ref|ZP_02042761.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149]
 gi|153793522|gb|EDN75942.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +++G       +G  +    + E    L  ++  D+  ++  L        
Sbjct: 4   ILIIEDDADLREGLEYTLSGEGYQILTAENAERGRKLWKTSSCDLILLDCNL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S V ++ ++   +    +   + GVDD +        +L          K 
Sbjct: 62  SLCSEIRKSSDVFILMLTARDTELDEVKALEMGVDDYM-SKPFSIAVLKARIKKLLSRKS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +  IR+         + EV  L + E ++L Y + N G+ ++K QI   I+   
Sbjct: 121 EKQWISSNGIRLDKSSCQVICKEEVLELSKIEYKLLLYFLENPGQILSKEQILERIWDKD 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + V+EN V  +I +LR+K+  +      + +   LGY
Sbjct: 181 GKFVDENTVSVNIRRLRRKIEADPQNPQWIQTVHGLGY 218


>gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +           D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +         +     +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 232

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
 gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
          Length = 251

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + D         G  +         + L      D+  ++  L    G  V
Sbjct: 4   ILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S++P++ ++     Q  ++ F++G DD + KP   +E+L RV A+ RR  
Sbjct: 64  CQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRAD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+ G I  +       +  +    G+   L   E  +L  LM   G+ V+ ++I 
Sbjct: 124 RIPQTAKHGEILTYGPLTLVPERFEAVWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 QEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
 gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
          Length = 239

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 235


>gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
 gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
          Length = 244

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 15  ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE        L R   
Sbjct: 73  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 236


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +         +    D+  ++  L       +
Sbjct: 3   ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIML--PSMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR + 
Sbjct: 61  TICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRA 120

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +                              V  L  +E  +L YL+ N  +  ++ Q+ 
Sbjct: 121 TGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +    +E  V+ HI +LRKKL +      + +   +GY  D +
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLSSD-EKPFLYTVWGVGYKFDED 227


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIM--MPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241


>gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
 gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
          Length = 233

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F +         +   D++ ++  L        
Sbjct: 5   ILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIML--PDISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
            L + IR     P+I ++   +    +     G DD + KP    E+             
Sbjct: 63  TLCQKIRERYTYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRRYKK 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +      + +     +  +  +   L   E  IL+ L+ NRG  ++  ++
Sbjct: 123 YNVTLPEEKRHIILYSNLTLDIKKHECLLNDKPISLTPTEFSILQILLENRGIVISGEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           F  I+         N +  HI +LR+KL + L     + +   +GY I+ 
Sbjct: 183 FHRIWKDEYYTKSNNTITVHIRRLREKLGDTLENPKYIKTIWGVGYKIEE 232


>gi|42782326|ref|NP_979573.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217960663|ref|YP_002339227.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096718|ref|YP_002530775.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228986323|ref|ZP_04146460.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229139866|ref|ZP_04268431.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|229197364|ref|ZP_04324091.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|42738251|gb|AAS42181.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217065124|gb|ACJ79374.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240776|gb|ACM13486.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228585988|gb|EEK44079.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228643531|gb|EEK99797.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228773350|gb|EEM21779.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G ++      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122]
 gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122]
          Length = 238

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   + +    L   +G  ++          L      D++ ++          L
Sbjct: 13  ILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVM--MPKASGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+   +R  S  P++ ++        +    +G DD + KP             +     
Sbjct: 70  EVCERLRLSSNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRRYRQ 129

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   +    + GP+ + +  R          L   E  +L  L  NRG+ V+  ++
Sbjct: 130 YGSAQGAQTGETIQAGPVLIDTRARRVSKGETPVALTDLEYEVLLALARNRGRVVSAREL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++         N V +HI  LRKKL         V +    GY+ID
Sbjct: 190 YENVWRSMYLPQSNNTVMAHIKNLRKKLEADPRDPQIVRTVWGRGYTID 238


>gi|218898303|ref|YP_002446714.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901739|ref|ZP_04065911.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228966150|ref|ZP_04127212.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542653|gb|ACK95047.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228793519|gb|EEM41060.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228857871|gb|EEN02359.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKIAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
 gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
          Length = 260

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  +  G G +V
Sbjct: 36  ILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 95

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 96  IKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILRRIS 155

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 156 PMATEDIIEMNGLTLDPTSHRVSSNDTPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 215

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 216 GA-NVYVEDRTVDVHIRRLRKALEAEGHDKMVQTVRGTGYRF 256


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++             +   D+  ++  +       +E
Sbjct: 5   LVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMI--PVYTGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + +++R  S VP+I ++        +   + G DD + KP +        + + R +   
Sbjct: 63  VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGKK 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++   
Sbjct: 123 AEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLDT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G      +   V+ H+ +LR+K+ +       + +K  +GY  
Sbjct: 183 IWGST-YPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYF 226


>gi|66046101|ref|YP_235942.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63256808|gb|AAY37904.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 227

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1]
          Length = 255

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     DG S E           Q     D+  ++  L        
Sbjct: 33  ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGL--PDISGF 90

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 91  ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 150

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A      ++ +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 151 RAEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 209

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 210 ASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGY 248


>gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +E  N              D+  ++  L   G    
Sbjct: 13  ILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIML--PGTDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 71  EICKQVREVKDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLARYDR 130

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +NN  E   I++    R   V GE  P   +E  +L +L  N      K ++F
Sbjct: 131 LVSNSKNNNNIIEIRGIKIDKTARRVFVNGEEKPFTTKEFDLLTFLAENPNHVFTKEELF 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 191 KEIWDM-DSIGDIATVTVHIKKIREKIELDTSKPQYIETIWGVGYRF 236


>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 243

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S R D+  ++          L
Sbjct: 10  ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDI--QMPRMDGL 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 68  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 127

Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +            +       +R+    R+         L R E  +LE L+A+  + +
Sbjct: 128 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  +++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 188 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 238


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           + + +RA   + P++ +S        +   + G DD + KP   R               
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++++    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 244

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L +    D+  ++      G+   
Sbjct: 11  LLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIM--MPGDDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  SQVP+I ++        +   + G DD + KP   RE+ AR+ A+ RR + 
Sbjct: 69  TLCQQIRRDSQVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLRRAEF 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
                E  P R                             +  +L   +   G  + +  
Sbjct: 129 RQPEKEKEPSRRLRFAEWTLDTLSHQRTHEDGSLLDLSGSDALLLGMFLQQPGVVLDRDT 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I  A  G  +    E  ++  IS+LR+KL +       + + R  GY +
Sbjct: 189 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYML 236


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +           L      D+  ++  L   G   +E+
Sbjct: 12  VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 69

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR     
Sbjct: 70  CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 129

Query: 124 NRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +             I ++ D    + +GE   L  RE  +  YL  + G+ + +  +  
Sbjct: 130 AQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++G +D   +   V+  I +LR+K+ +     + + ++R +GY
Sbjct: 190 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 232


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       S         +   D+  +   ++  G   +
Sbjct: 3   ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTES-DIGLMILDIMMPGMNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I +S        +    SG DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTEE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + +     + +             L   E  IL  L ++  +  +  +IF 
Sbjct: 122 HVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 182 RVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVML--PDIDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++        +     G DD V KP    E++AR+ A+ RR +
Sbjct: 68  SVTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                     +       D  +    G    L   E ++L YLM N  + ++K QI   +
Sbjct: 128 PLEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+ N       + +KR +GY +
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLL 230


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +          +G  +      E    + S    D+  ++  L    G +V 
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVSGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR++ 
Sbjct: 66  RRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRIRP 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++R   G I +       + QG+   L   E R+L+YLM + G+  ++ Q+  A++G
Sbjct: 126 GLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK L   +  DP+ + R  GYS+D
Sbjct: 186 -SDVYVEARTVDVHIGRLRKALNGDVDGDPIRTVRSAGYSLD 226


>gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
 gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +  +    + G  ++   +      L S  R D+  ++  L   G    
Sbjct: 3   ILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVML--PGADGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + ++IR  S VP++ ++    +   +  F+ G DD + KP    E+LAR+     +   
Sbjct: 61  SVIKMIRQKSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSSG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +   GR     G    L  +E  +L  L    G+ +++T I S ++ +
Sbjct: 121 RESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASHVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR KL        + + R +GY +D
Sbjct: 181 -NFDTDTNVVDVAIRRLRAKLDEPFDTKLIHTVRGMGYVLD 220


>gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CMR15]
          Length = 233

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 15  MILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE+         R  
Sbjct: 73  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 132 QRSGAQSDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 191

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 192 H-RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 232


>gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
 gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
          Length = 231

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G ++           L +S   DV  ++  L        
Sbjct: 8   ILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGL--PDMDGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
           EL R +    +  +I +S     +  +   D G  D + KP         I   +     
Sbjct: 66  ELLRALPMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRRGGG 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    R   G + +  +     +  +   L   E ++L YL  + GK V   Q+  A+
Sbjct: 126 DGESPPTRYVFGELWIDMEAHTAGLAAQDLHLTPTEFKLLAYLARHAGKVVTHGQLLKAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G      +E+ V  HI KLR+K+         + ++  +GY  
Sbjct: 186 WGK-QSQGQEHYVRIHIHKLRQKIEQDPARPRYLRTETGIGYRF 228


>gi|188589410|ref|YP_001921180.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499691|gb|ACD52827.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 237

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G + +    +L+      +  + ++  ++  L       
Sbjct: 5   ILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIML--PDGDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
            E+ + IR+ S VP++ +S        +  F  G DD + KP   +E+  RV A      
Sbjct: 63  YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + GP  +     +    G+   L  +E +IL  L  N+ + ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKTIELTAKELKILSLLAHNQNQIISK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +++  ++G  D    +N +  HI KLR+K+         + + R LGY +
Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEEDSSNPKYILTVRGLGYKL 232


>gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 1   MILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE+         R  
Sbjct: 59  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 118 QRSGAQSDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 177

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 178 H-RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 218


>gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501]
 gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501]
          Length = 233

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D       +DG  ++ F   +           D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +   P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N + +              + +        + GE   L   E  IL YL+  +G+ V  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLVERKGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+F A++G        N V +HI +LR+KL+        + +   +GY ++
Sbjct: 183 EQLFEAVWGEKFLD-NNNTVMAHIGRLREKLKEPTRKPKFIKTIWGVGYKVE 233


>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  + S           + D++ ++  L        
Sbjct: 19  ILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVML--PETDGF 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P+I ++        +     G DD + KP    E++ARV A  RR K 
Sbjct: 77  QICRKIREKYNYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 136

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A+                  +  +  +   L   E  IL  L  NRG+ V+  ++F
Sbjct: 137 YNVGAQPQADVFEYGGLVLNVTTHECTLNEKPLVLTPTEFSILRILCQNRGRVVSSEELF 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             I+         N +  HI  LR+K+ +       + +    GY I+
Sbjct: 197 RQIWKEEYFTKNNNTITVHIRHLREKMGDSFENPKYIKTVWGCGYKIE 244


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D   A    + +        E    +       V  ++       E   
Sbjct: 4   ILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVM--MPKEDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 62  EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N   +  +       +  +     + G    L ++E   +  L +N  K   +  +  
Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           +++G FD   +   V+SHI +LR KL      +  + +   +GY  + +
Sbjct: 182 SLWG-FDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229


>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 229

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        ++ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
 gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++   +        +      E      S    D+  ++  L   G   LE
Sbjct: 5   LVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLML--PGIDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120
           + R +R   +VP+I ++   S    +   + G DD            +            
Sbjct: 63  VCRRLRQAGEVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTGHS 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I V +D R     G    L  RE  +L YL+A+ GK   +  +   ++G 
Sbjct: 123 GEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVWGW 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                + + V  H+ +LR+K+  +    + + +   +GY  +
Sbjct: 183 T--IGDRSTVTVHVRRLREKIESDPTRPERLVTVWGVGYRWE 222


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E                +  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F  +G  +           +  +   D+  ++  +        
Sbjct: 3   ILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMI--PYLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ + IR  S+VP+I ++     +  L  ++ G DD V KP   +    ++ A +     
Sbjct: 61  KVCKSIRDLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSVI 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N      +++     + ++ G+V  L  +E  +L + + N+   +++ ++   +
Sbjct: 121 DIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD       V++H+ +LR+KL++K     + + R  GY  + N
Sbjct: 181 WG-FDYDGGLRTVDTHVKRLREKLKDKSN--YIVTVRGKGYKFEVN 223


>gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 247

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 21  ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIM--MPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 79  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 139 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 199 YESVWKEKAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 246


>gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium]
 gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii]
          Length = 232

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ + IR     P+I ++             S  DD + KP +                R
Sbjct: 63  QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 + +      +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+ 
Sbjct: 182 ELFEAVWGERFFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 12/233 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   V +         G  +           L  S   D+  ++  + G  G  +
Sbjct: 4   ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L +   A  ++P+I +S        +   + G DD + KP   RE++ARV A  RR K
Sbjct: 64  CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQ 172
                       +   G+    +  +          L  +E  +L +L    GK  ++  
Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
           +    +  FD + +   V+ HI ++R+KL         +++ R +GY   + N
Sbjct: 184 LLKQFW-EFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIETN 235


>gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16]
          Length = 231

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G     F S             D+  ++  L   G+  L
Sbjct: 8   ILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKL--PGKNGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S VP+  ++        L   + G DD + KP   RE++AR+ A++RR++ 
Sbjct: 66  EVCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQ 125

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T    ++    +    + +   L   E R+L+ L++N G+  +++Q+    Y  
Sbjct: 126 IGVPEPTRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ 185

Query: 181 FDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
               ++  V++SHI  LRKK+      G + + +   +GY  + 
Sbjct: 186 EQLIID-RVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEV 228


>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA3]
 gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA2]
 gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL097PA1]
 gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL099PA1]
 gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
          Length = 232

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++          L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++    P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + E           +    R+         L R E  +L   + N  K + +  + 
Sbjct: 123 PEPEQNEAPEQLSFADLTLDPGTREITRGNRRISLTRTEFALLAVFLQNPEKVLERWWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEPRLIHTVRGVGYVLREAN 231


>gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
 gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
          Length = 229

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +    L      D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLTLDPSSHRVMSATQPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +         +    D+  ++  L       +
Sbjct: 3   ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIML--PSMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR + 
Sbjct: 61  TICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRA 120

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +                              V  L  +E  +L YL  N  +  ++ Q+ 
Sbjct: 121 TGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLSSE-EKPFLYTVWGVGYKFDED 227


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +    G+   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
 gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
          Length = 226

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G      +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+       ++
Sbjct: 63  EVLKSIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S    E   I V    R   + G    L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           G       +  ++ HIS LR KL +    +P+  + R  GY  +
Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMFN 225


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +        G +G + +                 D+  ++  L       LE
Sbjct: 8   LVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLML--PVLDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+  +
Sbjct: 66  VARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++   
Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++        +++ +    DV  ++  L       L
Sbjct: 3   ILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGL--PVMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + +  RA  Q +P++ ++   +    +   D+G DD + KP H  E+LARV A + R  
Sbjct: 61  TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +   GP+ + +      V G+   L   E ++L  LM   G+ ++++++   +Y 
Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N ++  I +LRKKL      D +++ R LGY +
Sbjct: 180 AQDHDRDSNTIDVFIGRLRKKL----PPDTIETVRGLGYRL 216


>gi|306790486|ref|ZP_07428808.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308333099|gb|EFP21950.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu004]
          Length = 228

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|251778767|ref|ZP_04821687.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083082|gb|EES48972.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 237

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G  S+    +L+      +  + ++  ++  L       
Sbjct: 5   ILIVDDEIEILKLLETVLKKEGFNSVYTAKTLKEGLAEFNRVKPELVILDIML--PDGDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
            E+ + IR+ S VP++ +S        +  F  G DD + KP   +E+  RV A      
Sbjct: 63  YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + GP  +     +    G++  L  +E +IL  L  N+ + ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +++  ++G  D    +N +  HI KLR+K+ +       + + R LGY +
Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEDDSSNPQYILTVRGLGYKL 232


>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
 gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
          Length = 242

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP            ++     
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 244

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + +S   D+  ++  L     +  
Sbjct: 11  ILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQML--PEIEGT 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR++S  P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 69  EVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 128

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      S    +   + +  D       G    L  RE  +L YL    G+ + +
Sbjct: 129 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             + + ++G FD   +   V+  + +LR+K+ +     + + +KR +GY
Sbjct: 189 EALLTEVWG-FDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGY 236


>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 246

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++           +  +    +  ++          +
Sbjct: 19  ILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIM--MPKIDGI 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++ARV +  RR   
Sbjct: 77  HMCMKVREQKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMK 136

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +               ++     +  V      L  RE  ILE L+ N G   +  QI+
Sbjct: 137 MSGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIY 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY ++ +
Sbjct: 197 EKVWNERSFQ-SDNTVMVHIRKIREKVEENARKPRYIKTVWGVGYKVEKD 245


>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 232

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + +     ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
 gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
          Length = 226

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G  +E  ++ +   ++  S + D+  ++  L G G   +
Sbjct: 3   ILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPG-GIDGV 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L   IRA +   P++ +S    +   +    +G DD V KP    E    +  +    R
Sbjct: 62  RLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRGR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  + E   + +    R     G+   L  RE R+LEYL  + G+ V +T +   +
Sbjct: 122 TEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+    G   + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFGTPLIHTIRNAGYML 223


>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+          G  +    + E         R DV  ++  L   G   L+
Sbjct: 5   LIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLLPFRPDVVVLDLML--PGMSGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + R IR   QVP+I ++        +   ++G DD V KP+           + R     
Sbjct: 63  VCRRIRDRDQVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLRRQDAS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + V   G     +GE   L   E R+L  L A+ G+  ++ Q+  A
Sbjct: 123 LPDGTRPRAETHGELVVDRAGLVVTHRGEPVALAPSELRLLLTLSASPGQVFSRQQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++       +  +V++ + +LR KL        V + R  GY  
Sbjct: 183 VW-EHSYHGDIRLVDACVKRLRNKLGEGRNPRYVQTVRGFGYRF 225


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   E          L S    D+  ++          +
Sbjct: 75  ILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVM--MPFMDGM 132

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA     P+I ++        L   + G DD V KP   RE++ARV A+  R  
Sbjct: 133 TCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 192

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +         G + + +      V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 193 PRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQK 252

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L    G   + +   +GY  D
Sbjct: 253 VW-NYDYFGEDRTVDTHVKMLRGHLGKCRG--YIATVWGIGYKFD 294


>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
 gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D    L    G ++           L +    D+  ++  + G     L
Sbjct: 4   ILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGP--DGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILAR 111
           E+ R +R  + V P++ +S        +    +G DD + KP            +     
Sbjct: 62  EVCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVN 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A    +  +      G ++V  D     V G+   L  RE R+L  L     +  +  
Sbjct: 122 RFAPAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++    +   D  V +  + +HIS LR KL    G   V++    GY +
Sbjct: 182 ELHQGAWDNHD-PVADKTIMAHISNLRHKLGAAGGAGLVETVWGFGYRL 229


>gi|225387530|ref|ZP_03757294.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme
           DSM 15981]
 gi|225046366|gb|EEG56612.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   +++       ++G  +  F   +      S    D+  ++      G   L
Sbjct: 5   IYVADDELHIRNLIQTFLANEGYEVRTFADGDSLFQAFSERCPDLIILDIM--MPGTDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S+VP++ +S   S    +     G DD + KP    E++ARV A++RR + 
Sbjct: 63  SLCARIRGESRVPIMIVSAKDSPLDRVTGITLGSDDYMVKPFLPLELVARVKALFRRAEY 122

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S   A               R   V GE F +   E   L YL+   G+ V+K ++   I
Sbjct: 123 SQTEAPAAFKCGNLLLEQGARTITVGGEAFSVTPTEFDFLSYLLERAGQAVSKQELMREI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + L D  ++  V +  + +LR+KL+       V +    G+ ++
Sbjct: 183 WKLPDYELDTRVADDLVKRLRRKLKEAGCSASVKTVWGFGFRLE 226


>gi|167772673|ref|ZP_02444726.1| hypothetical protein ANACOL_04054 [Anaerotruncus colihominis DSM
           17241]
 gi|167665151|gb|EDS09281.1| hypothetical protein ANACOL_04054 [Anaerotruncus colihominis DSM
           17241]
          Length = 228

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             LI+D   +++  +      G ++ GF    +F + L       +  ++  L   GE  
Sbjct: 7   IYLIEDDESIRELVLYALESAGYAVRGFADGGQFWQALAEGETPGLILLDIML--PGEDG 64

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           L + R ++A    S  P+I ++   +    +   D G DD V KP    E+    R    
Sbjct: 65  LTILRRLKASARLSDTPVIMLTAKAAEYDKVRGLDLGADDYVTKPFGVMELLSRVRAVLR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             R   +      G I + +  R     GE   L  +E  +L YLM N    +++ +I  
Sbjct: 125 RARPDAAAALCRCGGITLDAGRRVVTANGEAVTLTFKEFELLAYLMKNECIVLSREKIME 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ HI  LR+KL      + + + R +GY I
Sbjct: 185 RVWG-FDYEGESRTVDMHIKSLRQKLGPCG--ELIRTVRGVGYKI 226


>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
 gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
          Length = 247

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G +++            S    D   ++  L   G    E
Sbjct: 20  LVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVML--PGFPGFE 77

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           L R +R      P++ ++   ++   +   DSG DD + KP H    +    A   R   
Sbjct: 78  LCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGPL 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS      G +R+ S+G           L  +E  +LE+ M   G+ + +  +    + L
Sbjct: 138 VSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWDL 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  NVV+ H+  LR+K+  + G   +++ R +GY +
Sbjct: 198 A-FEANSNVVDVHVRALREKIDRRFGVRSIETVRGVGYRL 236


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +   A     G  +      E    L          +   L+      LE
Sbjct: 4   LLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELF----PQADLVILDLMLPKVGGLE 59

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R+I +   ++PL+ ++     +  +   + G DD V KP   RE+         R   
Sbjct: 60  VARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREV-VARVKALLRRAG 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+R+    R+  + G+  PL R E  +L  L  + G   ++ ++   ++G  
Sbjct: 119 LREELVYGPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWG-P 177

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                + VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 178 GFPGVDRVVDVHIAALRKKLGDDPENPRFIETVRGVGYRF 217


>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 226

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                 + R D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLML--PGVDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +RA S VP+I ++        +   +SG DD + KP + +E++AR+    R ++V
Sbjct: 63  EICTRVRAESGVPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLRPVQV 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         V     +         L   E  +L  L     +  ++  +   ++G 
Sbjct: 123 PVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YHYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGYR 221


>gi|229156833|ref|ZP_04284920.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228626753|gb|EEK83493.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G ++      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D A +++    +    G              L      ++  ++  +  G G + +
Sbjct: 6   LVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGSGIQFI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +       +P++ ++     +  +   + G DD + KP   +E+ AR+ A+ RR   
Sbjct: 66  KLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRRSAP 125

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               +   E R+L + M +  +  ++ Q+ + ++G
Sbjct: 126 TATEEVIDVQGLRLDPVSHRVTANDLPLDMGPTEFRLLHFFMTHPERVYSREQLLNNVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 186 T-NVYVEDRTVDVHIRRLRKAMAVTGHDVLIQTVRGSGYRF 225


>gi|183981321|ref|YP_001849612.1| two-component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium marinum M]
 gi|183174647|gb|ACC39757.1| two-component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium marinum M]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|47564389|ref|ZP_00235434.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558541|gb|EAL16864.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G ++      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 254

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54
            +L++D    +D        DG  +      +    +  ++R        D+  ++  L 
Sbjct: 21  ILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLML- 79

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                  E+   IR  S VP+I +S   +    +   + G DD V KP  +RE+LAR+ A
Sbjct: 80  -PRLDGTEVCTRIRRSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 138

Query: 115 IYRRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR +V  +  E       +R+  +  +  V GE   +P RE  +LE  + + G+ + +
Sbjct: 139 VLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVLTR 198

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            QI   ++G  D   +   ++ H+ +LR ++  +      + + R LGY +D
Sbjct: 199 GQIIERLWG-PDYEGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRLD 249


>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 229

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G    L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|295098193|emb|CBK87283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 240

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAQSPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWE 233


>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
 gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
          Length = 226

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G  +      E       S +  ++ +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIK-GINLLVLDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ + IR  S+VP+I ++     Q  L  F+ GVD+ ++KP   + ++ARV AI  R ++
Sbjct: 65  EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTVQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E G I +   G    + G+   L  +E  +L+Y M+N+G+ + +  I + ++  
Sbjct: 125 TEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR KL  K     + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS--YIHTIWGMGYKFEV 223


>gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 228

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +    + +         + D+  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            E  R I    Q  +  ++      + +  FD+G DD + KPI  R    ++ + +    
Sbjct: 68  CEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRRNV 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  + G + +  D      + E   LPR+E  +L  L +  GK   + +I   
Sbjct: 128 LPKGDEGNVVKIGDLIIDKDQYKIVFKKEEIILPRKEFELLSLLTSKPGKVFKREEILDV 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G  +  V    ++ HI KLR+KL +        + + +GY 
Sbjct: 188 VWGN-EVIVGGRTIDVHIRKLREKLGDDS----FKTVKGVGYK 225


>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
          Length = 247

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     E   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++                 D+  ++  +       +
Sbjct: 6   ILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMI--PNLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  S VP+I ++    +   +   D+G +D ++KP    E+    RV    + L
Sbjct: 64  EVCRRIRQFSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKAL 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   ++ +   I + +        G+   L + E  +L+ L+ N+   + + ++   ++G
Sbjct: 124 KNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D + + NVV+  I  LR K+ N+     + + R +GY I  N
Sbjct: 184 -YDYSGDTNVVDVFIRYLRSKIDNERQDKLITTIRGVGYVIKDN 226


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +    +  S   D+  ++  L   G+   E
Sbjct: 2   LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVML--PGKDGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   +SG DD ++KP   +E++AR+ A  RR    
Sbjct: 60  VCRQIRAESGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEP 119

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +     +   G      G    L   E  +L  L     +  ++  +   ++G +
Sbjct: 120 APERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWG-Y 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+ +     + V + R +GY 
Sbjct: 179 RHAADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGYK 217


>gi|165868373|ref|ZP_02213033.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|164715099|gb|EDR20616.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 223

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|29336923|sp|Q9CCJ2|MTRA_MYCLE RecName: Full=DNA-binding response regulator mtrA
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|325684430|gb|EGD26596.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 241

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V       F  +G         E    +  +   D   I   L    +  +
Sbjct: 3   ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNK--------------PIHHR 106
           ++ + IR  S+  P+I ++   S    +     G DD V K                   
Sbjct: 63  QVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRRVM 122

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                            +          S       +  V  L  +E  +L  +     +
Sbjct: 123 LEGQPRDLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPKQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K G   + +   +GY  D
Sbjct: 183 VFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235


>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 234

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  +     +G ++              +   D+  ++  L       L
Sbjct: 5   ILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVML--PELDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S+ P++ +S        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 63  EVCRRLRAGSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRRTEA 122

Query: 122 SNNRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              GPI V ++  +    G+   L   E  +L  L+   G  ++
Sbjct: 123 PPPAPAPASTGARAAVLRHGPIEVDTERHEARYLGQPVSLTATELGVLGALLERPGVVLS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+    Y  +D  + E  +++H+ ++R K R   G DP+ +   +GY +
Sbjct: 183 RGQLMQRAY-RYDNLITERTIDTHVRRIRAKFRVVGG-DPIATVHGVGYKL 231


>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 252

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    +   +    +      L      DV  ++  L   G   +E
Sbjct: 20  LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGL--PGMDGIE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 78  VCRQLRTFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKA 137

Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  P R             +   GR+  +  +   L R E  +L  L +  G   +
Sbjct: 138 PVYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFS 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + Q+  A++G       E++V+ H+  LR+KL +       V + R +GY +
Sbjct: 198 RRQLIEAVWGES-WVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 248


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       S +       +   D+  +   ++  G   +
Sbjct: 3   ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTES-DIGLMILDIMMPGMNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I +S        +    SG DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVVKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTEE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + +     + +             L   E  IL  L ++  +  +  +IF 
Sbjct: 122 HVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 182 RVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++         +G  +      E    L +     ++ ++  +  K     
Sbjct: 4   ILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR++   P+I ++    L+     F +G DD V KP   +E++ R+ A+ RR +V
Sbjct: 62  EVCEEIRSYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEV 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N +        +     +    G +  LP +E  +L  L +  G+   + ++   I+G 
Sbjct: 122 VNEKMIVLNNTSIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   ++ H+ +LR++  +   F  + + R +GY ++ 
Sbjct: 182 -DFNGDNRTIDVHVKRLRERFEHTDDF-VITTVRGVGYKLEV 221


>gi|229134079|ref|ZP_04262899.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649414|gb|EEL05429.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LNADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|187934770|ref|YP_001885970.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722923|gb|ACD24144.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 237

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G + +    +L+      +  + ++  ++  L       
Sbjct: 5   ILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIML--PDGDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
            E+ + IR+ S VP++ +S        +  F  G DD + KP   +E+  RV A      
Sbjct: 63  YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + GP  +     +    G++  L  +E +IL  L  N+ + ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +++  ++G  D    +N +  HI KLR+K+ +       + + R LGY +
Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEDDSSNPKYILTVRGLGYKL 232


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A ++          G ++   +S E    L +    D   ++  L G  G +V
Sbjct: 6   ILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGKDGNEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
               R   A   +P+I ++        +   + G DD V KP   R ++        R  
Sbjct: 66  CRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRRTP 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +     +  V G+   L   E  IL  L    G   ++ QI
Sbjct: 126 EPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVFSRQQI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + G +D ++    V+  I  LRKKL +      +++ R +GY I
Sbjct: 186 IDQVRG-YDYSITPRAVDVQIFGLRKKLGSAG--TCIETVRGIGYRI 229


>gi|300717533|ref|YP_003742336.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299063369|emb|CAX60489.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 235

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    +                +           D+  ++  L   G   
Sbjct: 9   LILVVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVLDWVKQTPPDMILLDLML--PGMDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I +R K
Sbjct: 67  LTVCREIRRFSDLPIMMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILKRCK 126

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   A+    + +  +            L   E R+L+ L    GK  ++  + + +Y 
Sbjct: 127 RTPEEAQKASLLVIDENRFQASWDQGPLDLTPAEFRLLKTLAQEPGKVFSREMLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLELLDSDQPFIRAVYGMGYRWE 228


>gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 276

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++             DV  ++  L   G   +E
Sbjct: 56  LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGL--PGLDGIE 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S+  ++ ++        L+    G DD + KP   RE++ARV A+ RR + +
Sbjct: 114 VCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 173

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  E   +     +     +  V G+V  L R E  +L  L     +  ++ Q+   ++
Sbjct: 174 VSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 233

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +E +V+ HI  LR+KL        +D+ R +GY +
Sbjct: 234 D-PAWVGDERLVDVHIKNLRRKLDADPA-RYIDTVRGVGYRM 273


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +     G + +  +    E  GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
              ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGY 227


>gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 297

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +     G  +   +       L      DV  ++  L   G   +E
Sbjct: 67  MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGL--PGIDGIE 124

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112
           + R +R  S   ++ ++        L     G DD + KP   R                
Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +  +      G + +  + R+  ++ E+ PL R E  +L  L        ++ Q
Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +   ++G  D   +E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 245 LIDRVWGE-DWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++         +G ++           +    +E ++ +   ++       +
Sbjct: 7   LVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKE-IALVILDVMMPKMDGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120
           + R IR  S+VP+I ++     +  L  F+ GVD+ +                       
Sbjct: 66  VCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLGN 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  E G I++       ++  ++  L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 126 TAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVW-N 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D   +   +++H+ KLR KL ++   + + +   +GY  + N
Sbjct: 185 YDYFGDARTIDTHVKKLRSKLGDRG--EYIKTIWGMGYKFEVN 225


>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 224

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G  +           L  S   DV  ++           
Sbjct: 4   LLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIM--MPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+ +  +P+I +S        L  F+ G+DD V KP   +E++ARV A+ +R + 
Sbjct: 62  SACKEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKRSEH 121

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +              +   GR+  V G+   +  +E  +L YL+ N    + + ++   +
Sbjct: 122 AAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNIALTRDKLLEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI  LR  L        + + R +GY  + 
Sbjct: 182 WG-YDFFGDDRTVDTHIKMLRNSLGEY--RKFIVTLRGMGYKFEV 223


>gi|317051237|ref|YP_004112353.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316946321|gb|ADU65797.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 235

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G+ +      E         R DV  ++  L   G   +
Sbjct: 9   ILIIEDDRRLAQLISEYLQSHGLVVRVETDGERGLREALRHRYDVILLDLGL--PGRDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R HS +P++  +        +   + G DD + KP   RE+LAR+ A  RR++ 
Sbjct: 67  SVCQQLRGHSDIPILITTARGEEADKVLGLEVGADDYIAKPYSPRELLARIRAFTRRMRG 126

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +  +     +      L   E  +L  L +N G+ +++ ++    
Sbjct: 127 QVGPRHAVLQVGSLCLEPEALQATLDSSRLDLTSYEFALLYALASNAGQVLSRERLMELA 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            G  D+A +   V+ HIS+LR+KL +       + + R  GY  
Sbjct: 187 RGSSDDAFD-RSVDVHISRLRQKLGDNSRPVKMIRTVRGAGYQF 229


>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 226

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G  +E  ++ +   +L  S   D+  ++  L G G   L
Sbjct: 3   ILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L   IRA +   P++ +S    +   +    +G DD V KP    E    +  ++   R
Sbjct: 62  RLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRGR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R     G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 122 SDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDTPLIHTIRNAGYML 223


>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
 gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
          Length = 228

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 SNPSILSHVLKVGDLVLDRQQHRVYRKEKEVRLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRALDPIRTVRGAGYSF 227


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +           L +    D+  ++  L        
Sbjct: 9   LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVML--PDMDGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
            + R +R     +P++ ++   S+   +     G DD V KP        R       + 
Sbjct: 67  TITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + +  D  +    G V  +   E  +L YLM N  + ++K QI  
Sbjct: 127 AEDQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E  +VES+IS LR+K+  +     + +KR +GY +
Sbjct: 187 HVWD-YDFRGEMGIVESYISYLRRKIDTEGLPPLIHTKRGVGYVL 230


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++             +   D+  ++  +       +E
Sbjct: 12  LVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMI--PVYTGIE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + +++R  S VP+I ++        +   + G DD + KP +        + + R +   
Sbjct: 70  VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSGKK 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++ S 
Sbjct: 130 QAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLST 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G      +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 190 IWGDS-YPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFF 233


>gi|163940906|ref|YP_001645790.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863103|gb|ABY44162.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + DG       +G+ ++  N  E    + S A  D   ++      G    
Sbjct: 3   ILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVM--MPGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ ++        ++  D+G DD + KP  +  ++AR+ A+ RR  
Sbjct: 61  RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +    R+    R      +  PL  RE  +L++L+ + G+ V K ++ + ++G
Sbjct: 121 RGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                 + N+VE +I  LR K+    G   + + R  GY +D N
Sbjct: 181 GS-FDGDTNIVEVYIGHLRAKVDRPFGRAAIGTVRGAGYRLDRN 223


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + ++  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E             +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 VAAPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 229


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A   ++G+  +          L      D+  ++          +
Sbjct: 119 ILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 176

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 177 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+               V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 297 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342


>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|118618059|ref|YP_906391.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium ulcerans Agy99]
 gi|118570169|gb|ABL04920.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium ulcerans Agy99]
          Length = 228

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVDIDVPAHKATRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G                     D+  ++  L   G    
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLML--PGMAGT 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           E+ +I++     + +P+I ++        +  F+ G DD + KP   RE++ RV      
Sbjct: 62  EICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLRR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +        GP+ + ++     V  +   L   E ++L  L    G+  ++  +  
Sbjct: 122 TLPEQPRKKVFSVGPVSIDTERHLVTVADKEILLTTIEYKLLLDLAERAGRVQSRDILLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G ++   +   V++H+++LR KL +    D + + R  GY I+ 
Sbjct: 182 NVWG-YNYVGDSRTVDTHVTRLRTKLGSAG--DMIKTVRGFGYKIEE 225


>gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++  + +   +G         +           D+  ++  L   G   ++
Sbjct: 6   LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWML--PGGSGIQ 63

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +  + +     +P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  IAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++          R+          G    +   E R+L + M +  +  ++ Q+   +
Sbjct: 124 APTSLEEAIEVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAIATLGHDRLVQTVRGAGYRF 225


>gi|307312356|ref|ZP_07591990.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|306907527|gb|EFN38030.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061354|gb|ADT75681.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli W]
 gi|320198770|gb|EFW73370.1| Response regulator BaeR [Escherichia coli EC4100B]
 gi|323183860|gb|EFZ69251.1| transcriptional regulatory protein baeR [Escherichia coli 1357]
 gi|323378066|gb|ADX50334.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 240

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 239

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++      G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++     S +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
 gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +    G         +           ++  ++  L  G G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++          ++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGGHDKMVQTVRGAGYRF 225


>gi|117928972|ref|YP_873523.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649435|gb|ABK53537.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + DV  ++  L   G   ++
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPHFVFDGDKALAAFREVKPDVVLLDLML--PGTDGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR    
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVVGLESGADDYVVKPFKPKELVARLRARLRRTDEP 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   G      G+  PL   E  +L  L        ++  +   ++G +
Sbjct: 124 APEILTIGDVTIDVAGHSVTRDGQPIPLTPLEFDLLVALARKPRHVFSREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPDHPEIVLTVRGVGYK 221


>gi|182435928|ref|YP_001823647.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776552|ref|ZP_08235817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464444|dbj|BAG18964.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656885|gb|EGE41731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 220

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         S    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGAYDLVILDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G +RV +  R      +   L  +E  +LE L    G+ V+K +I   ++
Sbjct: 121 AGTAAPVLTVGALRVDTAARRVIRGEDEITLTAKEFAVLEQLALRAGQVVSKAEILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL        + + R  GY ++
Sbjct: 181 D-FAYDGDPNIVEVYISTLRRKLGASA----IRTVRGAGYRLE 218


>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  I     +G              L      D+  ++           
Sbjct: 4   ILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIM--MPHLDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + I+      P I +S        +  FD GVDD V KP   +E++ R+ AI +R+ 
Sbjct: 62  SAVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVH 121

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+ + +   + +    R   ++G+   L  +E  +L YL+ N G  + + Q+   
Sbjct: 122 PVEAVSSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   ++  +++HI  LRK L +      + + R +GY  + 
Sbjct: 182 VWG-YDFFGDDRTLDTHIKLLRKNLGDY--AKYIITLRGVGYRFEK 224


>gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
 gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    + E      +    D+  ++  L   G   L
Sbjct: 6   ILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLML--PGMDGL 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R ++ +     + ++ ++        +   + G DD V KP   + ++AR+ ++ RR
Sbjct: 64  QVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLRR 123

Query: 119 LKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                + +        V+G    L   E R+L +L +  G    + Q
Sbjct: 124 RESADETGADQVVVHIDDLVIHPGRNQVTVKGVPVDLTFTEFRVLHFLASRPGWVFTRYQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +A+ G  D +V +  V+  I  LRKKL        +++ R +GY  
Sbjct: 184 IVNAVRG-DDYSVTDRAVDVQIVGLRKKLGAYG--KYIETVRGVGYRF 228


>gi|41409458|ref|NP_962294.1| hypothetical protein MAP3360c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464131|ref|YP_883351.1| DNA-binding response regulator MtrA [Mycobacterium avium 104]
 gi|254822993|ref|ZP_05227994.1| DNA-binding response regulator MtrA [Mycobacterium intracellulare
           ATCC 13950]
 gi|296168959|ref|ZP_06850628.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|41398289|gb|AAS05910.1| MtrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165418|gb|ABK66315.1| DNA-binding response regulator MtrA [Mycobacterium avium 104]
 gi|295896428|gb|EFG76081.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|331083633|ref|ZP_08332744.1| hypothetical protein HMPREF0992_01668 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403844|gb|EGG83396.1| hypothetical protein HMPREF0992_01668 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +     S    + L       +  ++  L   G    
Sbjct: 7   ILIVEDDTDINNLLFTALKKQGYTATQAFSGTEAKMLLKMENFALILLDLML--PGISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+      +I ++   +L   ++   +G DD + KP   +E+LARV    RR   
Sbjct: 65  EVLEFIKEQGNSAVIILTAKDTLDDKVNLLIAGADDYITKPFEIQEVLARVQVQLRRSVQ 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE---VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N       ++  D    +++ E   +  + ++E  ILE L+ +  +  +K  IF   +
Sbjct: 125 EGNSNVLSHKQMVLDREKFQIKVEGQLMGKITKQEFSILELLLKHPKQVFSKEDIFEYAW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 185 EEP-YMGETKTLDVHISNIRKKIKEVTKEEYIETVWGIGYRL 225


>gi|311069979|ref|YP_003974902.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870496|gb|ADP33971.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 237

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   ++ + D+  ++  L        
Sbjct: 4   ILLVEDDTRIASLLCGHLQKYGYHVQIAEKLNQIKEEFTAMKPDLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S VP+I IS        +   + G DD + KP H   +LA++ ++ RR   
Sbjct: 62  YWCRQIRTISNVPIIFISARTDELNQVMAIEHGGDDYITKPFHLEVVLAKIKSVLRRTYG 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + + +            ++ D  + E +       ++E ++L   +    K V + ++
Sbjct: 122 EYSPSISQESKVVEIGELYIYPDKYEAEWKNNRMSFSQKEFQLLSIFVKEHKKIVTRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LRKKL N    + + + R  GY  + N
Sbjct: 182 LEALWDEIDF-VDDNTLTVNVNRLRKKLENAGLQEAITTIRGKGYKFEIN 230


>gi|239979030|ref|ZP_04701554.1| two component system response regulator [Streptomyces albus J1074]
 gi|291450908|ref|ZP_06590298.1| two component system response regulator [Streptomyces albus J1074]
 gi|291353857|gb|EFE80759.1| two component system response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +       E       +   D+  ++  L   G    
Sbjct: 4   ILIVEDEERIASFIEKGLRANGFTTTVAADGESAHDYALTGGFDLVLLDIGL--PGRDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P+I ++   S++ T+   + G DD + KP    E+LARV    R   
Sbjct: 62  TVLRDLREARVTAPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R      E   L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTVLRCGEVTLDLRTRRARSGEETVDLTAREFVLLELFLRHPGQVLSREQILSQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LR+KL        +++ R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRRKLGAH----RIETVRGMGYRL 218


>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +      +   +   L   ++ E           D+  ++  L        E
Sbjct: 8   LLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL--IDGYE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R IR  S+VP++ +S    +      F+ G DD + KP    E           +   
Sbjct: 66  VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      +   G + +  +  +  V+G+   L  +E  +L ++  +  +   + Q+
Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F+ ++   +   + + +   I KLR+K+  +      + +   +GY  
Sbjct: 186 FAHMW-RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232


>gi|329766813|ref|ZP_08258343.1| hypothetical protein HMPREF0428_00040 [Gemella haemolysans M341]
 gi|328839324|gb|EGF88906.1| hypothetical protein HMPREF0428_00040 [Gemella haemolysans M341]
          Length = 216

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++ +G     G  G  +      E    +      D+  ++  L   G+   
Sbjct: 3   ILIVDDEKIILEGISEYLGTQGYHIFKAEDGEKALRVFRDNSVDLVILDIML--PGKTGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I +S     QT L  F    DD V KP     + +R+  +  R   
Sbjct: 61  EVLGEIRKTSNVPIILLSALNDEQTQLSGFALTADDYVIKPFSLPLLASRIKVLLNRHYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +         +         +G    +  +E  IL+ L+ N+ + +++ QI   ++   
Sbjct: 121 EHEIWTYKDAIIDFSSYTATFEGNSVDVKPKEIDILKLLLRNQNRVLSRGQIIEQLWNSL 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E   + V++ ++  LRKKL    G D + + + +GY +
Sbjct: 181 EEPPLDRVIDVYVKNLRKKL----GLDCIVTVKNVGYKL 215


>gi|317490524|ref|ZP_07949002.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316910375|gb|EFV32006.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   + D    L  + G +   F +       Q+    D+  ++      G    
Sbjct: 7   IAVCDDEQAIADLVGQLLVEAGFAPTVFYAAPDLLACQADDPFDLVILDIM--MPGMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +R  S VP+I ++        +  F+ G DD V KP   RE++ARV A  RR   
Sbjct: 65  ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATS 124

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           E   I +        + GE   L  +E  IL  LM ++G+ VA   +F
Sbjct: 125 NDVASEDGPGMLECCGITLDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +++G    A   N V  HI  LRKKL       + V++   +GY +
Sbjct: 185 ESVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231


>gi|301054747|ref|YP_003792958.1| putative response regulator [Bacillus anthracis CI]
 gi|300376916|gb|ADK05820.1| predicted response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|296103743|ref|YP_003613889.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058202|gb|ADF62940.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPSLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233


>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 244

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 15  ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE        L R   
Sbjct: 73  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 236


>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
 gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++   ++  +S     +L      D+  ++  L   G    
Sbjct: 3   ILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVML--PGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    VP++ ++    ++  +    +G DD + KP    E+LARV A+ RR  +
Sbjct: 61  AVLRELRRDKHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRRGAL 120

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++       + +    R     G+   L  +E  +L  L+   G+ +++T +   
Sbjct: 121 PTPGQDSTVLKLADLELDLVRRKASRSGQRLDLTAKEFTLLTLLLRRHGQVLSRTALAEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NVVE  + +LR KL +      + + R +GY ++
Sbjct: 181 VWDM-NFESNTNVVEVAVRRLRSKLDDPFAKKLLHTVRGMGYVLE 224


>gi|256017749|ref|ZP_05431614.1| DNA-binding transcriptional regulator BaeR [Shigella sp. D9]
 gi|332278767|ref|ZP_08391180.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
 gi|332101119|gb|EGJ04465.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
          Length = 240

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|228940323|ref|ZP_04102894.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973239|ref|ZP_04133828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786435|gb|EEM34425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819449|gb|EEM65503.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940961|gb|AEA16857.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFQVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
 gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADLIRTVRGAGYSF 227


>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 231

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +    L   +G  +                  D+  ++           
Sbjct: 5   ILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIM--MPRLSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +   + G DD + KP   +E+LAR+ AI RRL  
Sbjct: 63  EVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  G     P+ + ++       GE   L   E +IL  L+   G+   + QI  A
Sbjct: 123 REGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +       +    ++ HIS+LR K+  +    + + +   +GY 
Sbjct: 183 V-STGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225


>gi|256374761|ref|YP_003098421.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255919064|gb|ACU34575.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  ++     +       S R D   ++          L
Sbjct: 3   ILVVDDDRAVRESLRRSLQFNGYQVDLAGDGQQALESVLSQRPDAMVLDVM--MPRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDAVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRTA 120

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                RD         L R E  +LE  +A+  + + + +I   
Sbjct: 121 TDVEEPVNLLRFADLELDPGTRDVRRGERPISLTRTEFALLELFLAHPKQVLTRGRILED 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEAGGEPRLLHTVRGVGYVL 223


>gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++     +    G +++     E  ++L  +   D   ++  L       +
Sbjct: 3   ILVVEDDADLRRQLADVLSQSGYAVDLAADGEDGQFLGETEPYDAVVLDLGL--PKIDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R      P++ ++        +  FD+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SVLKSWRKEGKTFPVLILTARDQWSEKVSGFDAGADDYLTKPFITEELLARLRALLRRAA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E G + V +      V GE   L   E R+L YLM ++G+ V +T++   IY 
Sbjct: 121 GHSAATIECGKLMVDTRAARATVNGEPIKLTAHEYRVLSYLMHHQGRVVPRTELVEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LR+K+    G D + ++R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRRKI----GQDRIQTERGLGYRL 216


>gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      L   +   +    S      L      D+  ++  L   G    
Sbjct: 4   ILIVEDDPKINKMVQTLLKKNEYEVVAAFSGTEALLLLEKESFDLILLDLML--PGLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+   I    Q+P+I +S    L T L+    G DD + KP ++ E++ R          
Sbjct: 62  EILVKINEQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N      + + S+     +  E   L  +E  ILE L+++  K   K  IF +
Sbjct: 122 GMTIDKTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +  ++E VV  H+S LR KL  K G + + +   +GY +  N
Sbjct: 182 VWSE-EYIMDERVVTVHVSNLRNKL--KHGEEYIKTVWGIGYKMQDN 225


>gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +        +G                 S   D+  ++  L G  G ++
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSELPDLILLDLMLPGLMGTEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
            ++ +     + +P++ ++        +  F+ G DD + KP   RE  +  R       
Sbjct: 64  CKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVLRRAA 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   GP+ + ++     ++ E   L   E ++L  L+  RG+  ++  +   ++
Sbjct: 124 PAAPACKLVIGPVHMDTERHQVLIENEEITLTTTEFKLLLNLVERRGRVQSRETLLQDVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V++H+++LR KL      + + + R  GY ++ 
Sbjct: 184 G-YNYVGDTRTVDTHVTRLRTKLGQAG--EMIKTIRGFGYKMEE 224


>gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +      +    G +++  +  E   +L  +   D   ++  L       + 
Sbjct: 4   LLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGL--PRLDGIG 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  RA    VP++ ++        +  F++G DD V KP    E++ R+ A I R   
Sbjct: 62  VLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     GP+R+ +      V+G    L  +E +IL YL+  +G+ V+++ I   +Y  
Sbjct: 122 HPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYDR 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + NV++  + +LR+KL        + + R LGY ++
Sbjct: 182 -DSDRDSNVIDVLVGRLRRKLGAP----LIHTVRGLGYRLE 217


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         D    +    +             DV  ++           
Sbjct: 21  ILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVM--MPYVDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IRA S VP++ ++     +  +  F+ G DD + KP    E++ARV +I RR++ 
Sbjct: 79  EACERIRAQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEG 138

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + R     +R     +        V+G    L   E  +L +L AN G+   +  +F  
Sbjct: 139 YSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   E N+V+  + +LR+K+         + + R +GY +
Sbjct: 199 VWG-YEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKL 242


>gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++    +      +  +   D+  ++          +
Sbjct: 6   ILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR +  +P+I +S        +    SG DD V KP +  E+LARV +  RR   
Sbjct: 64  EACLNIRKNRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYKK 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      E   + +  +  + ++      L  RE  IL  L  NRG      +I+
Sbjct: 124 LNVGSENKEGVIEIDNLTIDVNTHEVKLDNREINLTAREFDILLLLARNRGIVFNTEKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             ++   +    +N +  HI  +R+K+         + +   +GY I+ 
Sbjct: 184 EKVW-KDEFFESDNTIMVHIRNIREKIEENPKKPVFIKTIWGVGYKIEK 231


>gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D  ++      L   +G ++    +      + +  + D++ I+  L        
Sbjct: 4   IFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+ + 
Sbjct: 62  TVCTEIKEMMNIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNALRKSES 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E   + V +     +  G    L   E R+L   ++N    + +T++   ++   
Sbjct: 122 FGTNFEIRGLYVDTVSGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRTKLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPADPQIILTVRGTGYRL 221


>gi|111023287|ref|YP_706259.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226365794|ref|YP_002783577.1| two-component response regulator MtrA [Rhodococcus opacus B4]
 gi|110822817|gb|ABG98101.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226244284|dbj|BAH54632.1| two-component response regulator MtrA [Rhodococcus opacus B4]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTQALTAVRETRPDLVLLDLML--PGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR + 
Sbjct: 63  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTED 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +           E+  L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGEELISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     E    L  S   D+  I+  L       +
Sbjct: 3   LLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWML--PKLSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A S VP+I ++   +L   +    +G DD V KP    E+LAR+ A  R+  
Sbjct: 61  EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +  +            L  +E  +LEYL+ N  +   +++I   ++ +
Sbjct: 121 PTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +++ LR+KL        + + R +GY I
Sbjct: 181 H-FDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219


>gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  +    +             D+  ++  L     +  
Sbjct: 6   ILVIEDDPEIARLLELELCEAGFEMIWAPNGMQGLVALRERSPDLVILDLGL--PDLEGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  +   ++P+I ++   +++  ++    G DD V KP H  E++AR+    R  + 
Sbjct: 64  EIARRAKQAGEIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARIQVQLRHKEG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     +           +     L  +E  +L  L +  GK  ++ +I   ++G  
Sbjct: 124 GEVRQVDALLVHLGKR-QVHFEEREVRLSPKEFDLLALLASRPGKVFSREEIERHLWGKP 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 183 LEH-SSNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 220


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +      E    +  S   D+  I   ++       
Sbjct: 5   ILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNN-DIDLIIMDVMMPKMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +L + +R  S+VP++ ++     Q  L  F+ GVD+ ++KP   + + ARV A + R   
Sbjct: 64  QLCKEVRKLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   I V        + G+   L  +E  +L Y M NRG  +++ +I + ++  
Sbjct: 124 DNEEILDIAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   +++H+ KLR K+  K     + +   +GY  +
Sbjct: 183 YDYYGDARTIDTHVKKLRSKMGEKG--KFISTIWGMGYKFE 221


>gi|228908986|ref|ZP_04072816.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228850708|gb|EEM95532.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|15610382|ref|NP_217763.1| two component sensory transduction transcriptional regulatory
           protein MTRA [Mycobacterium tuberculosis H37Rv]
 gi|31794426|ref|NP_856919.1| two component sensory transduction transcriptional regulatory
           protein MTRA [Mycobacterium bovis AF2122/97]
 gi|121639135|ref|YP_979359.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663109|ref|YP_001284632.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium tuberculosis H37Ra]
 gi|148824448|ref|YP_001289202.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis F11]
 gi|167966684|ref|ZP_02548961.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           H37Ra]
 gi|215405258|ref|ZP_03417439.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 02_1987]
 gi|215413124|ref|ZP_03421825.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215428728|ref|ZP_03426647.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis T92]
 gi|215432210|ref|ZP_03430129.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis EAS054]
 gi|215447549|ref|ZP_03434301.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis T85]
 gi|218755032|ref|ZP_03533828.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis GM 1503]
 gi|219559305|ref|ZP_03538381.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis T17]
 gi|224991628|ref|YP_002646317.1| two component sensory transduction transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800288|ref|YP_003033289.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233859|ref|ZP_04927184.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis C]
 gi|254365870|ref|ZP_04981915.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254552349|ref|ZP_05142796.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188294|ref|ZP_05765768.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202407|ref|ZP_05769898.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T46]
 gi|260206597|ref|ZP_05774088.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis K85]
 gi|289444827|ref|ZP_06434571.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T46]
 gi|289448934|ref|ZP_06438678.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555524|ref|ZP_06444734.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289571473|ref|ZP_06451700.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T17]
 gi|289575966|ref|ZP_06456193.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis K85]
 gi|289747064|ref|ZP_06506442.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           02_1987]
 gi|289751940|ref|ZP_06511318.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T92]
 gi|289755369|ref|ZP_06514747.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           EAS054]
 gi|289759386|ref|ZP_06518764.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           T85]
 gi|289763434|ref|ZP_06522812.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis GM 1503]
 gi|294993814|ref|ZP_06799505.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis 210]
 gi|297635899|ref|ZP_06953679.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732896|ref|ZP_06962014.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298526722|ref|ZP_07014131.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306777575|ref|ZP_07415912.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu001]
 gi|306782296|ref|ZP_07420633.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu002]
 gi|306795007|ref|ZP_07433309.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu005]
 gi|306799205|ref|ZP_07437507.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu006]
 gi|306805053|ref|ZP_07441721.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu008]
 gi|306809239|ref|ZP_07445907.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu007]
 gi|306969342|ref|ZP_07482003.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu009]
 gi|306973694|ref|ZP_07486355.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu010]
 gi|307081403|ref|ZP_07490573.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu011]
 gi|313660228|ref|ZP_07817108.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|2072713|emb|CAB08347.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY
           PROTEIN MTRA [Mycobacterium tuberculosis H37Rv]
 gi|31620022|emb|CAD95366.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY
           PROTEIN MTRA [Mycobacterium bovis AF2122/97]
 gi|121494783|emb|CAL73264.1| Two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599388|gb|EAY58492.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis C]
 gi|134151383|gb|EBA43428.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148507261|gb|ABQ75070.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium tuberculosis H37Ra]
 gi|148722975|gb|ABR07600.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis F11]
 gi|224774743|dbj|BAH27549.1| two component sensory transduction transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321791|gb|ACT26394.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417746|gb|EFD14986.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T46]
 gi|289421892|gb|EFD19093.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440156|gb|EFD22649.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289540397|gb|EFD44975.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis K85]
 gi|289545227|gb|EFD48875.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T17]
 gi|289687592|gb|EFD55080.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           02_1987]
 gi|289692527|gb|EFD59956.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T92]
 gi|289695956|gb|EFD63385.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           EAS054]
 gi|289710940|gb|EFD74956.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis GM 1503]
 gi|289714950|gb|EFD78962.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           T85]
 gi|298496516|gb|EFI31810.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308214117|gb|EFO73516.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325047|gb|EFP13898.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308336786|gb|EFP25637.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308340620|gb|EFP29471.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308344561|gb|EFP33412.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308348357|gb|EFP37208.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308353194|gb|EFP42045.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308356934|gb|EFP45785.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308360935|gb|EFP49786.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu011]
 gi|323718115|gb|EGB27297.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902526|gb|EGE49459.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis W-148]
 gi|328460023|gb|AEB05446.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|257440725|ref|ZP_05616480.1| phosphate regulon transcriptional regulatory protein Phob
           [Faecalibacterium prausnitzii A2-165]
 gi|257196820|gb|EEU95104.1| phosphate regulon transcriptional regulatory protein Phob
           [Faecalibacterium prausnitzii A2-165]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   HS   +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHSDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+    G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223


>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
 gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
          Length = 242

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|194366914|ref|YP_002029524.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349718|gb|ACF52841.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 245

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G +++     +           ++  ++  L   G   ++
Sbjct: 18  LLVEDDRRLAELVSDYLHEHGFAVQHVARGDLAGAACRQHAPELVVLDLML--PGLGGID 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+ S VP++ ++        +   +SG DD V+KP+  R +LAR+ A+ RR   S
Sbjct: 76  VCRQIRSFSDVPILMLTACEDDIEQVLGLESGADDYVHKPVEPRLLLARLRALLRRRHGS 135

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +      +           RD ++ G    L   E  IL  L +  G+ +++ QI  A+
Sbjct: 136 GSTGSPCRLMHGGLLIDRMQRDVQLHGHAVELGTTEFEILWLLASQPGQILSRDQILQAV 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G+      +  V+  I KLR+KL +       + +    GY  +
Sbjct: 196 RGIG-FDGLDRSVDVSIGKLRRKLGDDAREPRRIKTVWGRGYQFN 239


>gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 237

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G+  +           L      D+  ++  L       
Sbjct: 10  ILIIDDEEDILKLLSTVLKREGLDDIYTAGDANSGYALFEKEDPDIILLDIML--PDGDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            E+ + IRA S VP++ IS        +  F  G DD + KP   +E+  R         
Sbjct: 68  YEICKRIRAISNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTN 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R  K  +   E GP ++     +    G++  L  +E +I  Y+  N  + ++K QI S
Sbjct: 128 QRNEKYQDTIYELGPFKIDEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQISS 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  D    +N +  HI +LR+K+ +       + +K+ LGY  
Sbjct: 188 KVWGE-DYIGFDNTIMVHIRRLREKIEDDPSNPKHIINKKGLGYKF 232


>gi|30263183|ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47528548|ref|YP_019897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186033|ref|YP_029285.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65320511|ref|ZP_00393470.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167632499|ref|ZP_02390826.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637046|ref|ZP_02395326.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170684879|ref|ZP_02876104.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705287|ref|ZP_02895752.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650137|ref|ZP_02933138.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564781|ref|ZP_03017702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032201|ref|ZP_03099615.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904374|ref|YP_002452208.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225865180|ref|YP_002750558.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813952|ref|YP_002813961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915829|ref|ZP_04079405.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928291|ref|ZP_04091332.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934497|ref|ZP_04097332.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229046908|ref|ZP_04192540.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229602195|ref|YP_002867447.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685790|ref|ZP_05149649.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254723197|ref|ZP_05184985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738260|ref|ZP_05195963.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742572|ref|ZP_05200257.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752575|ref|ZP_05204611.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761091|ref|ZP_05213115.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118413|ref|ZP_07056159.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|30257817|gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503696|gb|AAT32372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179960|gb|AAT55336.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167514553|gb|EDR89919.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532797|gb|EDR95433.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130142|gb|EDS99004.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170671139|gb|EDT21877.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084089|gb|EDT69148.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564098|gb|EDV18062.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994952|gb|EDX58906.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537351|gb|ACK89749.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786724|gb|ACO26941.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006224|gb|ACP15967.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228724453|gb|EEL75778.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228825134|gb|EEM70931.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228831338|gb|EEM76934.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843810|gb|EEM88883.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266603|gb|ACQ48240.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724198|gb|EFI64894.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
 gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +      +         +  +  ++  L G  G   
Sbjct: 5   ILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRL-EEQPQLILLDWMLPGRSGIMF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
           +E  +     +++P+I ++   + +  +   ++G DD + KP      +    A   R  
Sbjct: 64  IEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRRSY 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       +++    +   V+ +   L   E ++L +LM +  K  ++ Q+ + I+G
Sbjct: 124 DPPSQIVSFENLQIDQQAQRVSVENQFVELSATEYKLLLFLMTHPEKVYSREQLLNHIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE+  V+S+I +LR+ L        V + R  GY  
Sbjct: 184 -DDIYVEDRTVDSYIRRLRRSLEPFQADRYVQTVRGFGYRF 223


>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 342

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S R D+  ++          L
Sbjct: 109 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDI--QMPRMDGL 166

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 226

Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +            +       +R+    R+         L R E  +LE L+A+  + +
Sbjct: 227 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 286

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  +++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 287 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 337


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   V          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           + + +RA   + P++ +S        +   + G DD + KP   R               
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++++    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +       +DG+        E           D+  ++           
Sbjct: 4   ILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLM--MPKIFGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR  S+VP+I ++        +   + G DD + KP   RE++AR+  I+RR+  
Sbjct: 62  EVCKEIRKISEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRVNS 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + +  D  +  + GE   +  +E  IL  +  N G+ +++ +I  
Sbjct: 122 KSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREEILD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G +D   +  VV++ I +LRKKL  +     + +   +GY  + 
Sbjct: 182 KVWG-YDYFGDTRVVDTQIKRLRKKLPEEDEKWVIKTVYGIGYKFEV 227


>gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 247

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 21  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPHMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 79  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 139 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +          +G ++   N           +  D+  ++  L   G   +
Sbjct: 6   ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWML--PGMSGV 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P+I ++    +   +   D+G DD + KP +  E+LARV A  RR +
Sbjct: 64  DICKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQ 123

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +          + S+ R       +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 124 QDDPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEKEKRIIQTVRGVGYVL 223


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V++        +G  +           +    + ++  ++          L
Sbjct: 3   IVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVM--MPRMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------ 114
           E+ R +R +    P++ ++    +   +   D+G DD + KP    E+LARV +      
Sbjct: 61  EVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S        +R+  D RD    G    L R E  +L+ LMAN  + +++  I 
Sbjct: 121 AESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K  ++     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+         
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E            S    D+  ++  L   G    +
Sbjct: 19  LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVML--PGMNGFQ 76

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111
           +   +R++    P+I ++   + +  +     G DD + KP                ++ 
Sbjct: 77  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A   +      N    G + ++ +  +  + G+   L  +E  +L YL    G  + + 
Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + + ++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 197 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESAHIDSIRGVGYKLVVN 247


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +      +    L  S   D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVML--PQMDGI 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RR  
Sbjct: 62  EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + G I          V+GE   L  +E  +L Y M  +G+ + + 
Sbjct: 122 PRGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + + I+  FD   +  +V+ HIS LR+KL  +    + + + R  GY  
Sbjct: 182 TLLNRIW-NFDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKF 230


>gi|239944331|ref|ZP_04696268.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990784|ref|ZP_04711448.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         S    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+R+ +  R      +   L  +E  +LE L    G+ V+K +I   ++
Sbjct: 121 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL        + + R  GY ++
Sbjct: 181 D-FAYDGDPNIVEVYISTLRRKLGAAT----IRTVRGAGYRLE 218


>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. 83/13]
 gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M28]
 gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M5-90]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYSF 227


>gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V    +    + G ++E  ++     ++ +S   D   ++  L G G   L
Sbjct: 3   ILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +RA     P++ +S    +   +    +G DD + KP    E+       A   +
Sbjct: 62  RLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRGK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +    R  +  G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 122 GEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRQKIDKPFDTPLLHTVRNAGYML 222


>gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01]
 gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01]
          Length = 217

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V          DG +++   S E    L  +   D+  ++  L   G    
Sbjct: 3   LLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVML--PGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
                +R   ++P++ ++   + +  +   + G DD + KP H         A + R   
Sbjct: 61  TFLEALRRQHKLPVLMLTARDATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAHG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N    G + +  +G+    +G+   L  RE  +LE+L  N G    +  +   ++  
Sbjct: 121 EAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFLALNAGGVFPREVLLEKVW-A 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E V+  VV+ +I +LR+KL        ++++R LGYS 
Sbjct: 180 GEEGVDPKVVDVYIYRLRQKLGQGA----IETERGLGYSF 215


>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +    + D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +     G + +  +    E  GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
              ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGY 227


>gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family
           protein [candidate division TM7 single-cell isolate
           TM7c]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 3/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++   +      + S+   D   I+  + G     L
Sbjct: 3   ILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           ++ + +R      P I ++        +   D+G DD + KP    E+LAR+ AI  R  
Sbjct: 63  DMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRRPK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K      + G + + +  R  E   +   L  +E  +L+YLM + G+ ++K QI   ++ 
Sbjct: 123 KAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD  +  N VE++I  LRKK+  K     + + R +GY ++ 
Sbjct: 182 NFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224


>gi|296876253|ref|ZP_06900306.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432758|gb|EFH18552.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 217

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +      +    L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGYEIFEAGDGQEALDLFHREAPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++ +      L  F    D    +      +L        +   
Sbjct: 61  EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + ++  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E             +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 VAVPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 229


>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 340

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S R D+  ++          L
Sbjct: 107 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDI--QMPRMDGL 164

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 224

Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +            +       +R+    R+         L R E  +LE L+A+  + +
Sbjct: 225 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 284

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  +++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 285 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 335


>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
 gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
          Length = 233

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 4/224 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D    ++  +      G  +      E            +  ++  L G  G +V
Sbjct: 9   ILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDENPALIVLDWMLPGLSGIEV 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R      Q+P+I ++        +   D+G DD + KP    E+    R       
Sbjct: 69  CRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRRAN 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G I++       E  G    L   E R+L   ++  G+   +  +   ++
Sbjct: 129 PAEVGEMLEHGDIKLDPSRMKVERSGTGIKLGPTEFRLLTVFLSRPGRVWTRESLLERVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              D  +++  V+ H+ +LR+ L+     DP+ + R  GYS+D+
Sbjct: 189 -EHDLDIDQRTVDVHVGRLRRALKVNGLADPIRTIRSAGYSLDF 231


>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 242

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIM--MPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVWKEKAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241


>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
 gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +                   S      L +  R  V  ++  L   G    
Sbjct: 4   ILIVEDDMNINGLLKEALEKADYLCTQAFSGTEARMLLAMNRYSVVLLDLML--PGISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++   ++   ++   SG DD V KP   +E+LARVA   RR++ 
Sbjct: 62  EVLQEIRKQGNTPVIILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRMEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S +        +  D  +  V+ +      + R+E  ILE L+ +  K  +K +IF   +
Sbjct: 122 SFSEGNLVYQGLELDRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYAW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +RKK+++    + +++   +GY +
Sbjct: 182 -EEAYMGETKTLDVHISNIRKKIKSVTSKEYIETIWGIGYRL 222


>gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +L+DD   + +        +G  +   ++ +           ++  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKELPELIIMDVMMAEMDGMEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R I   + V +  ++      + +  FD+G DD + KPI  + ++++V       +
Sbjct: 68  CEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVKALLRRLK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V  +    G I +  +            LPR+E  +   L +  GK   + +I   +
Sbjct: 128 EQEVVTDTINVGGIEINREEYKIIKGNVEIALPRKEFELFYLLASKPGKVFKRDEILDKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  +  V    ++ HI KLR+K+      D   + + +GY  + 
Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGE----DLFKTIKGVGYKFEV 227


>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    S         S   D++ ++  L        
Sbjct: 5   ILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           EL R IRA    P+I ++   +    ++    G DD V KP            ++    +
Sbjct: 63  ELLRTIRADRTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLRRYTS 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R     +       + +    R   V  +       E  IL YL  +RG+ V    +
Sbjct: 123 YGTRDSGEESPIISVNGLVINRAARSVTVDEKQVRCTPLEYSILLYLAEHRGRVVPVEDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F A++     +   N V  HI  LR+K+ +       + +   +GY+I+
Sbjct: 183 FRAVWDEKFLSSSNNTVMVHIRHLREKIGDDAQNPRFIKNIWGVGYTIE 231


>gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium
           sticklandii DSM 519]
 gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium
           sticklandii]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G S    N       L   +  D+   +          L
Sbjct: 5   ILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVM--MPTIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        L  F++G DD V KP   +E++ RV  + +R   
Sbjct: 63  EVLREIRLISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTYK 122

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +           + +          +  +E +I+     N  + +++ Q+    +
Sbjct: 123 TIENKQVLIEGELKLDLNKQKLYKNEVEIDITSKEFQIIYAFFKNPRQILSREQLIELAF 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              D    +  ++ HI K+R K+         + +K   GY  
Sbjct: 183 SN-DFEGFDRTIDVHIKKIRHKIEEDTKNPKYLKTKYGAGYIF 224


>gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08]
 gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07]
 gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08]
 gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 89/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G  +   ++        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+ +  +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TICTEIKENQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   + V +     +  G    L   E R+L   ++N    + + ++   ++   
Sbjct: 122 FGSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    +  E   +   L   E +IL  L  N  +  ++ ++ + I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNRIFSREELMNYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 225


>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +                  D+  ++  L   G   L
Sbjct: 5   ILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLML--PGRDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I I+        L   + G DD + KP   RE+         R   
Sbjct: 63  EICKDVRVFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREV-VARVKAVLRRSG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +        + G    L   E ++L++L A+ G+  ++ Q+   IY   
Sbjct: 122 PGQTTALAGLVMDGACYRAALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIY-PD 180

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  V +  ++SHI KLRKK+ +   G D + S   +GY  +
Sbjct: 181 ERVVADRTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFE 221


>gi|229012458|ref|ZP_04169633.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229167897|ref|ZP_04295628.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615537|gb|EEK72631.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228748817|gb|EEL98667.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D       ++   +    S E    +    + DV  ++  L   G +  
Sbjct: 3   ILIIEDEKRVADIVAKYLENEKYRVFTCYSGEEGLKVFLDEKIDVVLLDLML--PGMQGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117
           E+ + +R  S V +  IS   +L   +  F+ G D+ + KPI  REI+ARV        R
Sbjct: 61  EICKKMREISNVYIFMISAKGTLDNKVGGFNLGADEYLVKPISPREIVARVNALKTRKER 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G ++++ + R     G+   L   E  IL +L  + G+   + Q+  A+
Sbjct: 121 ENNEELCIFDKGNLKIYPETRMVISYGKDIVLTPNEFDILYHLAKSPGRVFXREQLIDAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            G+ D    +  ++ HI  +RKK+  +        +   +GY  D
Sbjct: 181 MGI-DXDGFDRTIDVHIKNIRKKIELDTKSPKFXKTVTGIGYKFD 224


>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 251

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++     F  +G  ++            SS   DV  ++  L G G    
Sbjct: 25  ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVAL-GSGPNGY 83

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
           E+ R +RA    VP+I ++   S    +   ++G DD V KP        R       A 
Sbjct: 84  EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R +  S++  E GPI +    R+  + GE   +   E  +LE LMA+ G+   + ++  
Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           AI+G      +   ++ H+  LR+KL         + + R  GY +
Sbjct: 204 AIWGDSAY-RDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248


>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 226

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +       SA+ D+  ++  L   G+   +
Sbjct: 6   LVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVML--PGKDGTQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   +SG DD V KP   +E++AR+ A  RR +  
Sbjct: 64  VAREIRAESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQEDP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G      G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 GPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             + +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGYK 221


>gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 246

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 22/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G  +    + E    L    R D+  ++          L
Sbjct: 5   IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLM--MPKVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+  +IR     P+I ++        L     G DD + KP   RE++ RV  I RR   
Sbjct: 63  EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122

Query: 122 SN------------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
            +                         + ++   R   V      L  +E  +L  L   
Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            GK  +++Q+ + ++ +     +   V  H+ +LR+K+  N      + +   +GY +D
Sbjct: 183 PGKVFSRSQLLNQVWDIA-FDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLD 240


>gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +   A    +G   E             +A+ D+  ++  L   G   
Sbjct: 4   LILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVML--PGRSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
           L++ + +RA    P+I ++        +   + G DD V KP   RE++ARV       +
Sbjct: 62  LDVLKTVRADGPTPVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAH 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L+ +      GP+ V        V G+   L   E R+L YL    G+   + ++ +A
Sbjct: 122 AALEGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRLLAYLAQVPGRACTREELLAA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              L D    E VV++H++ +R+KL      + + + R +GY ++
Sbjct: 182 A--LPDSDALERVVDAHLASVRRKLDAAQAGELLHTVRGVGYRLE 224


>gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 241

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++           G  +    +      +    R D+  ++  L   GE  +
Sbjct: 8   ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIML--PGESGI 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRR 118
            + + IR   +   +I I+   + +  +  F++G DD V KP   +E++AR+ A      
Sbjct: 66  RVCQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSD 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G + + +     +V GE   L  +E  +L  L ++ G+  ++ ++   ++
Sbjct: 126 AGHRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G          ++ HI ++R  L  K  +D + + R LGY  +
Sbjct: 186 G-HAGVGSSRTIDVHIRRIRAALEKKSAYDYIHTARGLGYRFE 227


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V++        +G  +           +    + ++  ++          L
Sbjct: 3   IVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVM--MPRMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S        +++  D RD    G    L R E  +L+ LMAN  + ++++ I 
Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K  ++     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225


>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 41  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 99  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 158

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 159 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 217

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 256


>gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
 gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F + +           D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVVELYLQNE-YHVLKFYTGQEALECIEKTNVDLAILDVML--PDIDGF 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++     +  +     G DD + KP +  E++ARV A  RR   
Sbjct: 60  TILRKIREKYTFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRRYTQ 119

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+  ++    +          +  +     +  PL   E  IL  L  NRGK ++  ++
Sbjct: 120 YNDGKKSDSENIIDFAGLLLNKESHECIYNEQSLPLTPTEFEILWILCENRGKVISSQRL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           F  ++         N V  HI  LR+KL    G  D + +   +GY I+ 
Sbjct: 180 FEEVWHEEYLKNSNNTVMVHIRHLREKLSKPTGKSDLIKTVWGVGYKIEE 229


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++           +    +  +  ++          L
Sbjct: 26  ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVM--MPRMDGL 83

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           E+ R +R      P++ ++   ++   +   D+G DD + KP             +    
Sbjct: 84  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +   +       G + +  + RD    G    L R E  +L+ L+ N+ K + + Q
Sbjct: 144 VESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 204 ILEEVWG-YDFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 250


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    R D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            V +D R   ++G    L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|161502712|ref|YP_001569824.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864059|gb|ABX20682.1| hypothetical protein SARI_00761 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 240

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLIIDYLRAASYTPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQLDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630]
 gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G  +   ++        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TICTEIKEKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   + V +     +  G    L   E R+L   ++N    + + ++   ++   
Sbjct: 122 FGSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 235

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G S     +         + + D   ++  L       +
Sbjct: 7   ILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTL--PDADGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           E+ R +R  +  P++ +S   S    +     G DD + KP          +   R  A 
Sbjct: 65  EVCRKLRTLTAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRLAD 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    +        + +    R          L  +E  +L +L ++  +   K+Q+  
Sbjct: 125 PKFKATTQQLLRFDSLSIDKTARKVMAGHLEISLSAKEFDLLYFLASHPNQVFTKSQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G +   VE+N +  +I +LR+KL  +++    + +   +GY  D
Sbjct: 185 QVWG-YSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGYKFD 230


>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 253

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    +   +    +      L      DV  ++  L   G   +E
Sbjct: 21  LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGL--PGMDGIE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 79  VCRELRTFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKA 138

Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  P               +   GR+  +  +   L R E  +L  L +  G   +
Sbjct: 139 PVYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + Q+  A++G       E++V+ H+  LR+KL +       V + R +GY +
Sbjct: 199 RRQLIEAVWGES-WVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 249


>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +  +      ++   D S +   ++      L
Sbjct: 3   ILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTN-PDTSLMILDVMMPNMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        + + S   + +             L   E  IL  L ++  +  +   IF 
Sbjct: 122 AVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
            ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 182 KVW-QQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229


>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++          G  +      E    +    + D+  I   ++        
Sbjct: 7   LVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDK-DIQLIILDVMMPKLDGWG 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120
           + R IR  S++P+I ++     +  L  F+ GVD+ +                       
Sbjct: 66  VCREIRKDSKIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTSAI 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++    G I +        + G+   L  +E  +L Y + N+G  +++ +I ++++  
Sbjct: 126 GSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVW-N 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   + + +   +GY  + 
Sbjct: 185 YDYFGDARTIDTHVKKLRSKIGAKG--EYIKTIWGMGYKFEV 224


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F S        +    D++ ++  L   G    
Sbjct: 5   ILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVML--PGVNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SLCQKIREKYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++      + + +   +  + G+   L   E  IL  L+ N+G  V   
Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +F AI+         N +  HI  LR+KL +       + +   +GY I
Sbjct: 183 NLFHAIWKDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGYKI 232


>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 239

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S            L ++ R D+  ++  L       L
Sbjct: 14  ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIML--PVMDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E  + I     VP++ ++        +    +G DD + KP   RE++AR          
Sbjct: 72  EATKRIVTMRPVPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVER 131

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +  +   +    E   + +    R   ++GE   L   E  +L  L     + + + +
Sbjct: 132 AKVIAKNSENEKVLEFHGLTIDPAQRLVVLRGEEIHLTPTEFDLLATLARKPKQVLTREK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 192 LLEEVWDWVDASG-TRTVDSHVKALRHKL----GSEMIRTVHGVGYAFE 235


>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
 gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     E   +L      D   ++  L       L
Sbjct: 3   ILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGL--PVMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + ++ R A   +P++ ++   +    +   D+G DD + KP H  E+LARV A + R  
Sbjct: 61  TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +   GP+ + +      + G+   L   E ++L  LM   G+ V++T++   +Y 
Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N ++  I++LRKKL        +++ R LGY +
Sbjct: 180 AQDFDRDSNTIDVFIARLRKKL----PPGTIETVRGLGYRL 216


>gi|255523653|ref|ZP_05390620.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512708|gb|EET88981.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      L   +   +    S      L      D+  ++  L   G    
Sbjct: 4   ILVVEDDPKINKMVQTLLRKNEYEVVAAFSGTEALLLLEKESFDLILLDLML--PGLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+   I    Q+P+I +S    L T L+    G DD + KP ++ E++ R          
Sbjct: 62  EILAKINEEFQIPIICVSAKDDLGTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +N      + + S+     +  E   L  +E  ILE L+++  K   K  IF +
Sbjct: 122 GRTIDKSNIFGFKDLILDSENHIVTINDEPIELTVKEYSILELLISSPRKVFTKQNIFES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +  ++E VV  H+S LR KL  K G + + +   +GY +  N
Sbjct: 182 VWSE-EYIMDERVVTVHVSNLRNKL--KHGEEYIKTVWGIGYKMQDN 225


>gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  ++                  +  ++          L 
Sbjct: 8   LVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIM--MPELDGLA 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
           + R +R   ++P++ +S        +   + G DD + KP   RE++ARV          
Sbjct: 66  VCREVRRKHELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRARPA 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      GP+R+ ++      Q     L   E ++L  L+   GK   + ++
Sbjct: 126 PAPEVEAPAARMQSRGPLRMDAERWRAWWQDTEVVLTVTEFQLLATLLRVPGKVFTRDEL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + +Y   D  V +  ++SH+ ++R+K  +  G D +++   LGY +
Sbjct: 186 MNRVYD--DVVVSDRTIDSHVRRVRQKFASAGG-DVIETVHGLGYRL 229


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  ++ +    L ++ + D   ++      G     
Sbjct: 10  LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVM--MPGMDGFT 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P + ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 68  LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +  +          D   +      +  L   E ++L YL+ N    ++K +I   +
Sbjct: 128 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +K     + + R +GY +
Sbjct: 188 W-NYDFGGDGNVVESYVSYLRRKI-DKEEPHLIQTVRGVGYVL 228


>gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
 gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
          Length = 242

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + +     ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium]
 gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++             S  DD + KP +  E++ARV A  R+   
Sbjct: 63  QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 SNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPCIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+ 
Sbjct: 182 ELFEAVWGERYFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|52142292|ref|YP_084536.1| response regulator [Bacillus cereus E33L]
 gi|51975761|gb|AAU17311.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
          Length = 240

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++      G     
Sbjct: 17  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 74

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           + R +RA     P + ++   SLQ  +     G DD V KP        R  +    A  
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 195 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 236


>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
          Length = 242

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 19  ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 76

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 77  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 137 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 197 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 238


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +          +G  +      E    + +    D+  ++  L    G +V 
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVSGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR++ 
Sbjct: 66  RRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIRP 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  A++G
Sbjct: 126 GLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK L      DP+ + R  GYS+D
Sbjct: 186 -SDVYVEARTVDVHIGRLRKALNGTTDADPIRTVRSAGYSLD 226


>gi|84498095|ref|ZP_00996892.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381595|gb|EAP97478.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +E                 D+  ++  L       LE
Sbjct: 5   LLAEDDPAISEPLARALRREGYEVEVRADGREALEAAREN-PDLVVLDLGL--PTMDGLE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++       T+   D+G DD V KP    E+LAR  A+ RR   
Sbjct: 62  VCRRLRGEGHTVPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARARALLRRGIP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    IRV ++ R   +  E   L  +E  +L  L  N+GK +++ Q+   ++   
Sbjct: 122 EAVPTGQVDIRVDAESRRVFLHDEEIQLTAKEYELLRVLARNQGKVISREQLMREVW-ET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                   ++ HIS LRKKL +       + + R +G+  D
Sbjct: 181 AWYGSTKTLDMHISVLRKKLGDDAMQPRYITTIRGVGFRFD 221


>gi|229162132|ref|ZP_04290103.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228621339|gb|EEK78194.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F +G DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFIAGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGIEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  +           L  S + D+  ++  L       +
Sbjct: 5   ILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVML--PSLNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IRA    P++ I+   S+   +   D+G DD + KP    E+    R        
Sbjct: 63  EVCRRIRAAKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        + V    R  +   E   L +RE  +L   M N    + +  +   ++G
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ ++  LR+KL        + + R  GY +
Sbjct: 183 -FDAEVETNVVDVYVRYLRQKLDEHDKERYIQTVRGTGYVM 222


>gi|15842835|ref|NP_337872.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13883164|gb|AAK47686.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 235

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 15  ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 73  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 132

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 133 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 191

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 192 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 231


>gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator
           [Isosphaera pallida ATCC 43644]
 gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family
           [Isosphaera pallida ATCC 43644]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD   + +        +G  +      +           D+  ++  L    G +V
Sbjct: 6   ILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQVKLPDLIVLDLMLPVKPGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       VP+I ++        L  F  G DD V+KP   + ++ R+     R +
Sbjct: 66  CRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQLNRRR 125

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +            + +           E   L   E R+LE LM   G+   + ++ 
Sbjct: 126 QTEDAKNGDLVVERHGVVIDRHRHRALCNNEELLLTPTEFRLLEALMRQAGRAFTRHELM 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A  G  D  V E  ++ HI  LRKKL      D +++ R +GY  
Sbjct: 186 DAAMGE-DAVVLERTIDVHIKSLRKKL--NHSADLIETVRGVGYRF 228


>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 232

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++          L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++    P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E           +    R+         L R E  +L   + N  + + ++ + 
Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEARLIHTVRGVGYVLREAN 231


>gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEYALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETTGHDKMVQTVRGTGYRF 225


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR    +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
 gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++          G  +      E    +  + + D+  I   ++       E
Sbjct: 7   LVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNK-DIGLIILDVMMPKMDGWE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
             + IR  SQVP+I ++     +  L  F+ G+D+ + KP   + +              
Sbjct: 66  TCKEIRKFSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRTSDV 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G I +        + GE   L  +E  +L Y M N+G  +++ +I + ++  
Sbjct: 126 PADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNVW-N 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D   +   +++H+ KLR KL++K   D + +   +GY  + +
Sbjct: 185 YDYFGDARTIDTHVKKLRSKLKDKG--DYIKTIWGMGYKFEVD 225


>gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D        +G ++E   +      L S+ +     ++  L        +
Sbjct: 4   LLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGL--PDLNGRQ 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ ++   ++Q  +    SG DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRSG 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                             +  +      +  L  +E  +LE  M   GK +++T+I   +
Sbjct: 122 EIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +      NVV+ +I +LR+K+ +      + + R  GY +D 
Sbjct: 182 WG-YSADPLTNVVDVYIRQLRRKIDDDYELKLLKTVRGFGYKLDV 225


>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +   +    + E    +    + D++ I   ++       
Sbjct: 10  ILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDK-DIALIILDVMMPKMDGW 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           E+   IR +S+VP+I ++     +  L  F+ GVD+ +                      
Sbjct: 69  EVCAEIRRNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRVYS 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +    E G I +       ++ G+   L  +E  +LEY + N+G  +++ +I + ++ 
Sbjct: 129 KDAGEIIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNVW- 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLRKK+  K   + + +   +GY  + 
Sbjct: 188 NYDYFGDARTIDTHVKKLRKKMGEKG--EYIKTIWGMGYKFEV 228


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +              S   D+  ++  L       LE
Sbjct: 5   LLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGL--PEMDGLE 62

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR  V
Sbjct: 63  VCRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGNV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +++  +     +  E   L  +E  +L  L+ + G+ V + +I   ++   
Sbjct: 123 DQLTTGAHGVKIDIESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIMRQVWDTT 182

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
                   ++ HIS LRKKL +       + + R +G+  + N
Sbjct: 183 -WWTSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR +  +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIRENRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D     V+G+   L  +E  ILE L+ N+G  ++  +I+
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         D   +              +   D+  ++           
Sbjct: 7   ILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLM--MPEMDGF 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +       P+I ++    L+     F+ GVDD V KP    E+  RV A+ RR+ 
Sbjct: 65  EVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRVS 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQI 173
                                 +            L  +E  +L  L  N G   ++ Q+
Sbjct: 125 GEELAPRLKEGTFDDGRLYINSKTREVRLNGEDVYLTAKEFDLLWVLANNPGVVYSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G  +   +   V   I ++R+K+  +      + +   +GY  +
Sbjct: 185 LDMVWGN-EYFGDAGTVTVLIRRIREKIEKDPANPTYLRTVWGIGYKFE 232


>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        +G      +            + D+  ++  L   G    E
Sbjct: 5   LVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLML--PGMMGTE 62

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++     + +P+I ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++  A        +  +     V GE   L   E ++L  L    G+  ++  +   +
Sbjct: 123 LPASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +    +   V++H+++LR KL      + + + R  GY ++ 
Sbjct: 183 WG-YSYLGDTRTVDTHMTRLRTKLGAAG--ELIKTVRGFGYKLEE 224


>gi|229173900|ref|ZP_04301438.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228609538|gb|EEK66822.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          DG ++                  D+  ++  L   G    
Sbjct: 4   ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLML--PGTHGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           ++ R +R     P++ ++     +  ++  D G DD V KP    E+LARV A + R   
Sbjct: 62  DVCRALRLRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G IR+  + R   +  E   L  RE  +L  L++  G+ +++ ++   ++  
Sbjct: 122 PPVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCD 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       ++ H+++LR+KL+       ++S R +GY +
Sbjct: 182 HEIDEASRTLDVHVNRLRQKLQK--SRVRIESIRGIGYRL 219


>gi|160945822|ref|ZP_02093048.1| hypothetical protein FAEPRAM212_03355 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443553|gb|EDP20558.1| hypothetical protein FAEPRAM212_03355 [Faecalibacterium prausnitzii
           M21/2]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|57650905|ref|YP_187163.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|151222475|ref|YP_001333297.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|81693861|sp|Q5HDJ4|HSSR_STAAC RecName: Full=Heme response regulator hssR
 gi|187609572|sp|A6QJK3|HSSR_STAAE RecName: Full=Heme response regulator hssR
 gi|57285091|gb|AAW37185.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|150375275|dbj|BAF68535.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++      G    +
Sbjct: 5   LVVDDDPRILNYIASHLQIEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|157155282|ref|YP_001463431.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           E24377A]
 gi|187730866|ref|YP_001879801.1| DNA-binding transcriptional regulator BaeR [Shigella boydii CDC
           3083-94]
 gi|193069293|ref|ZP_03050249.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194431476|ref|ZP_03063768.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209919543|ref|YP_002293627.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SE11]
 gi|218554646|ref|YP_002387559.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI1]
 gi|218695701|ref|YP_002403368.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 55989]
 gi|260856059|ref|YP_003229950.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|260868788|ref|YP_003235190.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300818923|ref|ZP_07099128.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821816|ref|ZP_07101961.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300902275|ref|ZP_07120272.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301304482|ref|ZP_07210593.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301643523|ref|ZP_07243567.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309792958|ref|ZP_07687386.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331653508|ref|ZP_08354509.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331668775|ref|ZP_08369623.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331677990|ref|ZP_08378665.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331683763|ref|ZP_08384359.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|157077312|gb|ABV17020.1| DNA-binding response regulator BaeR [Escherichia coli E24377A]
 gi|187427858|gb|ACD07132.1| DNA-binding response regulator BaeR [Shigella boydii CDC 3083-94]
 gi|192957426|gb|EDV87873.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194420301|gb|EDX36378.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209912802|dbj|BAG77876.1| two-component response regulator [Escherichia coli SE11]
 gi|218352433|emb|CAU98207.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 55989]
 gi|218361414|emb|CAQ99001.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI1]
 gi|257754708|dbj|BAI26210.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|257765144|dbj|BAI36639.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300405637|gb|EFJ89175.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300525658|gb|EFK46727.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528542|gb|EFK49604.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300840208|gb|EFK67968.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301078096|gb|EFK92902.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|308123244|gb|EFO60506.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315255409|gb|EFU35377.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|320179499|gb|EFW54454.1| Response regulator BaeR [Shigella boydii ATCC 9905]
 gi|323152300|gb|EFZ38589.1| transcriptional regulatory protein baeR [Escherichia coli EPECa14]
 gi|323172671|gb|EFZ58305.1| transcriptional regulatory protein baeR [Escherichia coli LT-68]
 gi|323177024|gb|EFZ62614.1| transcriptional regulatory protein baeR [Escherichia coli 1180]
 gi|324019615|gb|EGB88834.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119108|gb|EGC12997.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331048357|gb|EGI20433.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331063969|gb|EGI35880.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331074450|gb|EGI45770.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331078715|gb|EGI49917.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|332092359|gb|EGI97433.1| transcriptional regulatory protein baeR [Shigella dysenteriae
           155-74]
          Length = 240

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|325263093|ref|ZP_08129828.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324031486|gb|EGB92766.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G  +   ++      +    + D++ ++  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLRSEGFEVTHASTRAEAFNVLEGNKFDLALVDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKDTQDIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSVR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   ++V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SGAAIEICGLQVDTASGVVKKDGREVFLSALEYRLLLVFVNNPKSIITRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIERDPANPQIILTVRGTGYRL 221


>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +E  N  +           D+  ++  L        
Sbjct: 4   ILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLML--PEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRQEKNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 RQIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +   S         +   D+  ++  L       L
Sbjct: 4   ILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVML--PELSGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R I       P+I ++   S+   +   D G +D + KP    E    +       +
Sbjct: 62  EVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQ 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +      + +    RD +   E   L  +E  +L + + N+G+ +++ QI + +
Sbjct: 122 TRERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G FD   + NV++ ++  LRKKL      + + + R +GY +
Sbjct: 182 WG-FDYYGDTNVIDVYVRYLRKKL---SLTEALQTVRGVGYRL 220


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G + +   + +  + L      D+  ++  +       ++
Sbjct: 9   LIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMI--PQVDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + + IR   + P+I I+        +   + G DD + KP   +E    +  V   Y   
Sbjct: 67  VLKWIRKQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSVD 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   +   + + S        G+   +P +E  +L YL +N+ K   + Q+   ++G
Sbjct: 127 NDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ H+ +LR+KL +      +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHVKRLREKL-SGGEQWQIETVWGVGYKFEV 227


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G              L    + D+  ++           
Sbjct: 4   LLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVM--MPKVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 62  EVCREIRKTSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRRISQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +             +           L ++E  IL  L  N  +  ++  + +++
Sbjct: 122 NDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLLNSV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G +D   +   V+SHI +LR KL +       + +   +GY  
Sbjct: 182 WG-YDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIWGVGYKF 224


>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G S +          L  +   D   ++  L       +
Sbjct: 5   ILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIML--PRLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +RA +   P++ +S        +   + G DD + KP   R             +
Sbjct: 63  EVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTS 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +           ++    G + V+ D  +      +  L  +E  +L YLM +    + +
Sbjct: 123 KEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR K+ +       + + R  GY  
Sbjct: 183 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKF 232


>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           +  +IIR  S +P++ IS              G DD + KP    E+       + R   
Sbjct: 62  DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    AN  K   K QI+
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   +   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWNE-EYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +E     +       S   D+  ++  L        
Sbjct: 5   ILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIML--PKVNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +     VP+I ++    +   +   + G DD + KP  +RE+LAR+ A  RR   
Sbjct: 63  DVCKTLTPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    +T  +           +       +   L  +E  +L  L +N  +   +  +  
Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ H+ ++R+K+  +     + +   +GY +
Sbjct: 183 KIWG-YDYYGDTRTVDMHVQRIRRKIDTQPN-KFIQTVFGIGYKM 225


>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
 gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++        +G S+      +    L       +  ++  L        
Sbjct: 6   ILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPA--LDGF 63

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +      S +P++ ++        +     G DD V KP   RE++ R+ AI RR
Sbjct: 64  EVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILRR 123

Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  A  E   IR+  D            L   E R+LE L+ + G    + Q+ + 
Sbjct: 124 GGRVAESALLERHGIRLRPDAHTASAGERELVLTATEFRLLEDLLRHAGTVRTREQLLNN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR KL        +++ R +GY I
Sbjct: 184 VWG-YSFEGYARTVDTHVRRLRSKLGEAAAA--LETVRGVGYRI 224


>gi|295110688|emb|CBL24641.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 222

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I      G S +G  + +           D+  ++  L G  G  
Sbjct: 1   MIYCVEDEKNIRELLIYTLETTGFSAKGMANAKELRIALKEELPDLILLDIMLPGEDGYS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  ++ R    +P+I ++   +    +   ++G DD + KP    E +ARV A+ RR 
Sbjct: 61  ILESLKLSRDTRGIPVIMVTAKEAEYDKVKGLEAGADDYITKPFGMMEFVARVKAVLRRC 120

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +  E       +         +     L R+E  +L+YLM N+G  +++ QI   +
Sbjct: 121 SKQEDDKELRTGDLSLSVGRHKVRWKDTSVELTRKEFELLQYLMENKGLVMSRNQILCHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL        +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 220


>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 223

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         DG ++   +  E   +  S  + D+  ++          L
Sbjct: 5   ILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIM--MPKMNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+   +R  S VP+I ++     +  L+ +  G DD + KP   + ++A+V A     R 
Sbjct: 63  EMLEKLREVSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKRTRE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++      + V     + +V  ++  L  +E  +L YL+ N    +++  I   ++G
Sbjct: 123 DLDSSIQNFNGLSVNQLSHEVKVNDKIILLSPKEYELLIYLINNESIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +   V+++I +LR+KL +K     + + R  GY  + 
Sbjct: 183 I-DYYGDIRTVDTNIKRLREKLLDKSS--YIVTVRGSGYKFEV 222


>gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium]
          Length = 232

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++             S  DD + KP +  E++ARV A  R+   
Sbjct: 63  QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLELVARVKAQLRQYMR 121

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPGIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+ 
Sbjct: 182 ELFEAVWGERFFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++    L   +G  +   ++      +      D+  ++      G   
Sbjct: 9   IILIVDDDEEIREIINILLSREGFVVWEASNANTAMAML-EKPVDLIILDIM--MPGRNG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            EL   IR  + VP++ +S         + F  G DD + KP    E        +    
Sbjct: 66  FELCTEIRKITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALLRRFF 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++N  + G + V  +     + G+   L   E +IL +L+ NR K ++  +
Sbjct: 126 VYQGVNNVSTDNTIKLGDLNVDFETGKVCINGDKVSLTGIEYQILSFLLHNRKKVLSARE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           I+  ++      +  N +  HI  LR+KL   L     + +    GY ID
Sbjct: 186 IYEHVWQEPFLPLSNNTIMVHIKNLRRKLEKDLQKPQYIRTIWGKGYYID 235


>gi|82751956|ref|YP_417697.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|123549423|sp|Q2YZ24|HSSR_STAAB RecName: Full=Heme response regulator hssR
 gi|82657487|emb|CAI81929.1| two-component response regulator [Staphylococcus aureus RF122]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +   +    + +      S E    L    R D++ I+      G    +
Sbjct: 5   LVVDDDSRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVIDIM--MDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  ++
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   T      +    + +V  +   LP +E ++L  L     +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|240172611|ref|ZP_04751270.1| DNA-binding response regulator MtrA [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 247

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  +
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +    GE   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGSLTLVPERFEAIWFGETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
 gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
          Length = 227

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +    S E    L       V  ++  L   G    
Sbjct: 4   ILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVML--PGIDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ +I+R    ++ +I ++        ++  +SG DD ++KP +  E    +  +     
Sbjct: 62  EVCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLD 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ S++     P R+    +     G+   L   E  I+   M+N GK  ++ ++ +  
Sbjct: 122 SIQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMT 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +G  +   +  +V+ +I +LR K+ +       +++    GY  + N
Sbjct: 182 WGE-EFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYRWNSN 227


>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +            ++   S +           ++  ++  L        
Sbjct: 4   ILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLML--PEIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRKIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N +              +    R   V G+      +E  +L +L  N  +  +K ++
Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           F  I+G+ D   E   V  HI K+R+K+       + +++    GY  
Sbjct: 182 FDKIWGM-DSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRF 228


>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
 gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
 gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
 gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
 gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
 gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
 gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
 gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
 gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
 gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
 gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
 gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
 gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
 gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
 gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
 gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
 gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
 gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
 gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
 gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
 gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
 gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
 gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
 gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
 gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
 gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
 gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
 gi|383762|prf||1904198A vanR gene
          Length = 231

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +        +  D++ ++  L   G   L
Sbjct: 5   ILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIML--PGTSGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  TICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   E     +         +  +  +  +   L   E  IL  L  N+G  V+   +F
Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +       + +  +    E  GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
              ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGY 227


>gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium sp. M14]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E     E  + +   +  D+  ++  L   G   +E
Sbjct: 6   MIVEDEEALSVLLRYNLEAEGYLVETIGHGEEADIVLQESVPDLLILDWML--PGVSGIE 63

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           L R +RA       P+I ++        +    +G DD + KP    E++ARV A     
Sbjct: 64  LCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALLRRS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  + ++      I +  +      +     L   E R+L++LMA+ G+  ++ Q+   +
Sbjct: 124 KPALISSILRYADIELDRESHRVHRERREVRLGPTEFRLLDFLMASPGRVFSRAQLLDGV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      D + + R  GYS+D
Sbjct: 184 WG-HDLYVDERTVDVHVGRLRKALNFANKPDLIRTVRGAGYSMD 226


>gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +    L   +G  ++                 D+  ++  L   G    
Sbjct: 4   IMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGADLILLDLML--PGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S VP+I ++   S    +   + G DD V KP   R     I A +     
Sbjct: 62  EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  E G +R+  +    EV G    +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R K+         + + R LGY  +
Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225


>gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 227

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +   ++      L    +  +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E+ R  +   Q  +   +      + +  FD+G DD + KPI  + +L++V      ++
Sbjct: 68  CEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVKALLRRFK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +   + G + +  +        E   LPR+E  +L  L +  GK   +  I   +
Sbjct: 128 NEEAPSQITKVGKLIINREEYKVFKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +GL +  V    ++ HI KLR+K+ ++       + + +GY  
Sbjct: 188 WGL-EVVVGGRTIDVHIRKLREKIGDES----FKTVKGVGYKF 225


>gi|324327183|gb|ADY22443.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|310828961|ref|YP_003961318.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
 gi|308740695|gb|ADO38355.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             LI+D   +    + L   +G  +    + +         + D++ I+  L        
Sbjct: 4   IFLIEDDQAIAKNLMLLLQSEGFIVTHAATRKEATDTLVDNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   ++    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEVKEVQNIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   ++V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SAATFEVCGLQVDTASGVVKKDGSEVFLSALEYRLLLMFVNNPKSIITRDRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +  G    + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPGKPKIIRTVRGTGYRL 221


>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 220

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 8/221 (3%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D     D    L G +G  +E  ++             D+  ++  L   G    E+ R
Sbjct: 2   EDEESFSDPLSYLLGKEGFDVEVVDNGSDALVEFDRNGADLVLLDLQL--PGTPGTEVCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRRLKV 121
            +R  S VP+I ++   S    +   + G DD V KP   R     + A +       ++
Sbjct: 60  QLRQRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEPEEL 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  + GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   ++G  
Sbjct: 120 ITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWG-S 178

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 179 DYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFE 219


>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. 16M]
 gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
 gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
           melitensis bv. 1 str. 16M]
 gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 34  IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 91

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 92  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 152 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 212 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 254


>gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621]
 gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621]
          Length = 242

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S        +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +         +    D+  ++  L       +
Sbjct: 3   ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR + 
Sbjct: 61  TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQA 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +                      V  L  +E  +L YL+ N  +  ++ Q+ 
Sbjct: 121 TGKAVIDEDMIESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227


>gi|254520763|ref|ZP_05132819.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914512|gb|EEH99713.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 221

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G S+           L  + + D+  ++  L        
Sbjct: 5   ILIVEDEKEIREGVSEYLAEVGYSVISAEDGMQAIELFKNNKIDLVILDIML--PKANGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +   IR  S VP+I ++      T +  FD   DD + KP     +  R+ A       
Sbjct: 63  VVLNKIRQESNVPVIMLTAMSDDYTQIMSFDEEADDYITKPFSIIVLHKRIEALLRRGVK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N +   G I +  +G      GE   L  +E +++E L+   GK + + QI   ++ 
Sbjct: 123 VSENKKWCYGDIEIDFEGYSARKNGENIDLKPKEIKLIELLLKYEGKVLTRAQILDNLW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +EA  + V++ +I  +RKKL      D + + + +GY  + 
Sbjct: 182 RIEEAPNDRVIDVYIKNIRKKL----LLDCIVTVKGIGYKFEE 220


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 21/237 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +          +G  ++          +  +   D   ++  L    G  + 
Sbjct: 5   LIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGMDIC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R        P++ ++        +   + G DD + KP   RE+LAR+ AI RR+  
Sbjct: 65  KKLRQ--EKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122

Query: 122 SNNRA----------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +N                  + G IR+     +  V+ E   +  +E  +L Y++    
Sbjct: 123 KSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRIN 182

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++ Q+  AI+  FD A E  +V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 183 RILSREQLLDAIW-NFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFE 238


>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 245

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           GV++              + R DV  ++  L   G+  LE
Sbjct: 21  LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLML--PGKDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR    
Sbjct: 79  VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 138

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         V    R   + G    L   E  +L  L    G+ +A+ Q+     
Sbjct: 139 AGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAG 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  +EA +   V+ H+S+LR+KL +       + + R  GY +
Sbjct: 199 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240


>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGESPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +   ++      L       +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E+ R      Q  +   +      + +  FD+G DD + KPI  + ++++V      ++
Sbjct: 68  CEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRRFK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS+   + G + +  +        E   LPR+E  +L  L +  GK   +  I   +
Sbjct: 128 EEGVSSQITKVGKLVINREEYKVYKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +GL +  V    ++ HI KLR+K+ ++       + + +GY  
Sbjct: 188 WGL-EVVVGGRTIDVHIRKLREKIGDES----FKTVKGVGYKF 225


>gi|317122193|ref|YP_004102196.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592173|gb|ADU51469.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 232

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        DG S+    S+             +  ++  L       L
Sbjct: 6   ILVVDDEPGIREICRLYLERDGFSVREAASVAGARAALQRESPALVVLDLML--PDGNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +     VP+I ++        +   + G DD V KP   RE++ARV A+ RR + 
Sbjct: 64  DLCRELVDQG-VPVICLTARAEETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARG 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A      G   V    R   V     PL  +E  +L  L+ +  +   + Q+   +
Sbjct: 123 PRAAAPVVVRFGRCAVDLAARRLLVDDREVPLTPKEFDLLALLVTHPHRVFTRQQLLEQV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  F  A +   V+ H+ +LR+K+         + +   +GY  D
Sbjct: 183 WD-FAYAGDTRTVDVHVQRLRRKIEPDPQRPRYLKTVWSVGYRFD 226


>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 261

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                   + D+  ++  L   G   ++
Sbjct: 42  LVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLML--PGMNGID 99

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR+ S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR +  
Sbjct: 100 VCKAIRSESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEAE 159

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G +   +G    L   E  +L  L     +   +  +   ++G +
Sbjct: 160 PAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 218

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 257


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    R D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            V +D R   ++G    L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGYKI 228


>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E       S + ++  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
           E  + IR  + +P+I ++   S Q  +  F SG DD + KP    E+             
Sbjct: 63  EAIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  +   + +         +     L  +E  IL  L  N+G+    ++I+  
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    + D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            V +D R   V+G    L  +E  IL+ L  N+G  ++  +I+
Sbjct: 123 YNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|331092423|ref|ZP_08341248.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401266|gb|EGG80855.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D + +++  +      G+   GF          +    ++  ++  L G  G +
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKARGFEDGRKFTEALAFETPELVLLDIMLPGEDGIE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           +L+  R       +P+I ++   S    +   D+G DD + KP    E+    +      
Sbjct: 61  ILKKLRNNAKTKNIPVIMVTAKGSEYDKVVGLDTGADDYITKPFGMMELVSRIKAVLRRT 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    + + G + +  +    +V G+   L  +E  +LE LM NR   + + ++   I
Sbjct: 121 TREKEETKYQIGNLVIDVEKHKVKVDGKSVTLTLKEFELLEKLMKNRHIVLTRDRLLEEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E   V+ H+  LR+KL +    + +++ R +GY I
Sbjct: 181 WG-YDFSGETRTVDVHVRTLRQKLGDAG--ELIETVRGVGYRI 220


>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A     G ++    +           R D+  ++  L        
Sbjct: 7   LLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVML--PDFDGF 64

Query: 62  ELPRIIR------AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           E+ R +R      A    P++ ++   + +  +    +G DD V KP +  E++ R+ AI
Sbjct: 65  EVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124

Query: 116 YRRLKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR                +  D       G    L   E  +L  LM N G+ ++K+Q+
Sbjct: 125 LRRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +D   ++++V S+IS LR+K+ +      + + R  GY +
Sbjct: 185 LELVW-QYDFGGDDSIVASYISYLRRKV-DLDEPKLIHTVRGTGYVL 229


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G  G ++      E      +  R D+  ++  L        
Sbjct: 14  LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVML--PDFDGF 71

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
           E+ R IR+ S   P++ ++   +L+  +     G DD V KP         +  V    +
Sbjct: 72  EVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSK 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R +   + +  +  +    G    L   E ++L Y M N G+ ++K QI   +
Sbjct: 132 GDAPPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++ +VES++S LR+K+ +      + + R +GY +
Sbjct: 192 W-RYDFRGDDGIVESYVSYLRRKI-DNTEPRLIQTLRGIGYVL 232


>gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
 gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++ E    + +     ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   +  E   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEASRTVMLYRETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 241


>gi|154483086|ref|ZP_02025534.1| hypothetical protein EUBVEN_00784 [Eubacterium ventriosum ATCC
           27560]
 gi|149736171|gb|EDM52057.1| hypothetical protein EUBVEN_00784 [Eubacterium ventriosum ATCC
           27560]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + ++ V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDEKFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D        +G  ++   +      L  +    +  ++  L   G   L
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVML--PGMTGL 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L + +R    QVP++ ++   S++  +     G DD + KP    E    +  +    R
Sbjct: 64  DLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGR 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    R +   + +  +       G    L  +E   LE LM+  G+  ++ +I S +
Sbjct: 124 EQRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ +     NVV+ ++ +LR K+        + + R LGY +D
Sbjct: 184 WGMHE-DPLTNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226


>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 257

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L      D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILSYGPLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR K+         + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLE 230


>gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
 gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
          Length = 235

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G S+E     E    +      DV  ++           E
Sbjct: 4   LVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIM--MPRRSGYE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ ++         D FD G DD + KP     + AR+ A+ RR   
Sbjct: 62  VVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGAP 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       V    R+         +  RE  +LEYL+ NR + V+K QI  A++  
Sbjct: 122 ERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                ++N+VE ++  LR+K+    G   +++ R  GY +
Sbjct: 182 A-YDGDDNIVEVYVGYLRRKIDAPFGAHAIETVRGQGYRL 220


>gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603]
 gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603]
          Length = 244

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 18  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIM--MPQMDGI 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 76  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 135

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V         + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 136 FNQNAVQVIKKEINIRGLEIDEMSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 196 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 243


>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +E                 D+  ++  L   G+  L
Sbjct: 4   ILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVML--PGKDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ R +R    + P++ ++        +   + G DD V KP   +E+ AR+ A      
Sbjct: 62  EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V     +  ++G+   L   E ++L+  +  RG+ +++ Q+ +A +
Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G  D      +V++HI+ LR+K+ +       + + R LGY  D
Sbjct: 182 GR-DTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFD 224


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D+  + +       + G S++     +       +A  D+  ++  L       +
Sbjct: 3   ILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIML--PKIDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L +++R    Q P++ ++   S++  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +         + ++ R     G+V  L  +E  +LEYL  N+G+ + ++QI   ++ 
Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ +I  LR+K+ +      + + R +GY +
Sbjct: 180 NYDFEGTSNIVDVYIRYLRRKIDDGFPEKLIHTIRGVGYML 220


>gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDSKEPKFIQNVWGVGYKIE 231


>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R  R      +VP+I ++        +   ++GVDD V KP   RE+    R     
Sbjct: 63  DLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +     GPIR+           +  P+   E R+L + M +  +   + Q+   
Sbjct: 123 AREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGYRF 225


>gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum]
 gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum]
 gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 231

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   + D       ++G S++ F               D++ ++  L        
Sbjct: 5   IVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+   +  +  +         +     + G+   L   E +IL YL  ++G  V+   +
Sbjct: 123 YNHSTASPTVEEYEKDGLILKINSHQCILYGKEVFLTPIEFKILLYLFEHQGSVVSSETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N V +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLHEEPRKPKLIKTVWGVGYIIEK 231


>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++     S +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPSDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
 gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
          Length = 239

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 89/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   ++  ++ +    +      DV  ++      G+  +E
Sbjct: 8   LIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVM--MPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
           + + IR     P++ ++        +  F+ G DD + KP   RE++ RV          
Sbjct: 66  VCKEIRMAKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRASGG 125

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 L    +      + + ++     + GE   L  +E  +L ++     +  ++  
Sbjct: 126 EQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +   I+  +D   +   +++H+ +LR+KL +        + +   LGY +
Sbjct: 186 LLKEIW-RYDFVGDLRTIDTHVKRLREKLYDISEEAGKMIVTVWGLGYKL 234


>gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
 gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  +E     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQERVPDLLILDWML--PGVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R        P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K     +    G I +  +      +     L   E R+LE+LM + G+  +++Q+   
Sbjct: 123 AKPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|329667413|gb|AEB93361.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 231

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      +         +  +  ++  L       +
Sbjct: 6   ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWML--PVYDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++         +  D G+DD + KP    E+ AR+  I RRL+ 
Sbjct: 64  TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              R      E   +++         +GE   L  +E  +L  LM +  K  ++ ++   
Sbjct: 124 EKRRVVSSTLEFSVLKIDLASHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   + N V+ +I  LR KL      + + + R  GY +
Sbjct: 184 VWG-YDFIGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  ++ +    L ++ + D   ++      G     
Sbjct: 12  LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVM--MPGMDGFT 69

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P + ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 70  LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +  +          D   +      +  L   E ++L YL+ N    ++K +I   +
Sbjct: 130 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +K     + + R +GY +
Sbjct: 190 W-NYDFGGDGNVVESYVSYLRRKI-DKEEPHLIQTVRGVGYVL 230


>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 235

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        D   + G  +      +  +   D++ I+           
Sbjct: 4   ILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIM--MPKIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
            L + IR   ++P+I +S        +   + G DD + KP +                +
Sbjct: 62  HLVKKIREKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +    +  +    E G +++ +        G   PL   E +I+ YLM + G+   K 
Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           QIF  ++       ++NV+  HIS LR K+ N     + + + R LGY  ++N
Sbjct: 182 QIFEYVWDEP-FYGDDNVIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNYN 233


>gi|260587331|ref|ZP_05853244.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260542198|gb|EEX22767.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 235

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +     S    + L       +  ++  L   G    
Sbjct: 15  ILIVEDDTDINNLLFTALKKQGYTATQAFSGTEAKMLLKMENFALILLDLML--PGISGE 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+      +I ++   +L   ++   +G DD + KP   +E+LARV    RR   
Sbjct: 73  EVLEFIKEQGNSAVIILTAKDTLDDKVNLLIAGADDYITKPFEIQEVLARVQVQLRRSVQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N       ++  D    +++     +  + ++E  ILE L+ +  +  +K  IF   +
Sbjct: 133 EGNSNVLSHKQMVLDREKFQIKVEGQLMGKITKQEFSILELLLKHPKQVFSKEDIFEYAW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 193 EEP-YMGETKTLDVHISNIRKKIKEVTKEEYIETVWGIGYRL 233


>gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G ++    +           + D++ I+  L        
Sbjct: 4   IFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+ +  R+   
Sbjct: 62  TVCTEIKETQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALRKSGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   I V       +  G    L   E R+L   + N    + ++++   ++   
Sbjct: 122 SPSAFEILGIHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ N       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTIRGTGYKL 221


>gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
 gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
          Length = 264

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +++         G  +    S        +    D+  ++      GE  L
Sbjct: 25  ILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSALTEVSPDIVLLDIM--MPGEDGL 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +     +P+I ++        +   + G DD + KP   RE++AR+ ++ RR+  
Sbjct: 83  SLCRHLVETRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRRVGR 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
               A       +          +           P+   E R+L   + N  + + +  
Sbjct: 143 GAASAPEAEDWHYHFEGWVLDPLKRKLTDAEGVTVPISTAEFRLLRAFLDNPRQVMDRDL 202

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   + G      +   V++ +S+LR+K+  +      + + R  GY  
Sbjct: 203 LLDLVQGRTAHLFD-RAVDNQVSRLRRKIEVDTSDPQLILTVRGGGYRF 250


>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       +        ++   D++ +   ++      +
Sbjct: 3   ILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTN-PDIALMILDIMMPEMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P++ +S        +    +G DD V KP +  EI+ARV ++ RR + 
Sbjct: 62  EVIKEVRKDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRSEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    E   + +     + +         +   L   E  IL  L ++  +  +   IF 
Sbjct: 122 NVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKIE 227


>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGSLTLVPERFEAIWFNDTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +    +           R+ +  I   ++       
Sbjct: 6   ILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMPDISGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++   S++  +  F+ G DD + KP     +   + A+ +R   
Sbjct: 66  EVLKEIRKTSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAVLKRAGK 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E   I V  D +    + +     R+E  +L Y + N G  +A+  I  A++G +
Sbjct: 126 LANILEYQDISVNLDAKKVYWKDKYIETTRKEYELLVYFIENSGIVLARNNILDAVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           D   +   V++ + +LRKKL        + S   +GY   + N
Sbjct: 185 DYVGDIRTVDTLVKQLRKKLTE--ECTYIKSVYGVGYLFGEGN 225


>gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +      E    +       +  ++           
Sbjct: 5   ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVM--MPDMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+   +R    +P++ +S        +    +G DD V KP ++       R +  R   
Sbjct: 63  EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +++VS++      + +        +      L  RE  IL  L  NRG+  +  +IF
Sbjct: 123 LNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR KL     G   + +   +GY I+ 
Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIEK 230


>gi|49478095|ref|YP_037336.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196037738|ref|ZP_03105048.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|229092209|ref|ZP_04223390.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|49329651|gb|AAT60297.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196031008|gb|EDX69605.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|228691200|gb|EEL44964.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKGNIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|319950949|ref|ZP_08024821.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
 gi|319435371|gb|EFV90619.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E             + R D   ++          L
Sbjct: 3   ILVVDDDQAVRESLRRSLTFNGYDVELAGDGVEAIERVDADRPDAVILDVM--MPRRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ RI+R+     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRILRSRGDDLPVLMLTARDAVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRG 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       +R+    R+         L R E  +LE LM +  + + ++ I   
Sbjct: 121 PDAEEVDEVLEFEDLRMDLATREVSRGERRIQLTRTEFSLLELLMHHPRRVLTRSHILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEGEGESRLIHTVRGVGYVL 223


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++         +   +    + E    +     E +S I   ++       
Sbjct: 6   ILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSE-ISLIILDVMMPKVDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + + IR  S +P++ ++        L+ F+ G D+ +NKP   + ++ARV         
Sbjct: 65  AVLKEIRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRRSTD 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     E G I++  D       G    L  +E  +L Y + N G  +++ +I + ++
Sbjct: 125 DSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR KL +K     + +   +GY  + +
Sbjct: 185 D-YDYFGDARTIDTHVKKLRSKLDDKGN--YIKTIWGMGYKFEVD 226


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++ + D+  ++  L        
Sbjct: 26  LLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVML--PDMDGF 83

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K
Sbjct: 84  TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 143

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++      +       +  +    G++  L   E ++L YLM N G+ V+K+QI   +
Sbjct: 144 HGSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI-DWN 223
           +  +D   +  +VES+IS LR+KL             + ++R +GY + D N
Sbjct: 204 W-EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDPN 254


>gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 231

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +        +    +      +       +  ++  L        
Sbjct: 6   ILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLML--PDITGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           E+ + IR  S+VP+I ++        L+  + G DD + KP          + + R  + 
Sbjct: 64  EICKKIRKTSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLRRTSE 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    +   + +               L   E  IL  L+   GK   + ++  
Sbjct: 124 ELVPLFNKISFDNDNLIIDFGKDLVLKNQSPVNLTPTEFNILSALIKYPGKVFTREELIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              G  +    +  V+SHI  LR+K+ +       V +    GY  
Sbjct: 184 FALG-SEFEGFDRAVDSHIKNLRQKIEDNPRTPKYVLTIHGKGYKF 228


>gi|30021338|ref|NP_832969.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|118478527|ref|YP_895678.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042921|ref|ZP_03110160.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206968886|ref|ZP_03229841.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218233754|ref|YP_002367955.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921982|ref|ZP_04085293.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953540|ref|ZP_04115583.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229070715|ref|ZP_04203945.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229080448|ref|ZP_04212969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229097707|ref|ZP_04228662.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229103767|ref|ZP_04234447.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|229116716|ref|ZP_04246100.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|229128513|ref|ZP_04257491.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229145816|ref|ZP_04274196.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229151413|ref|ZP_04279616.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|229179503|ref|ZP_04306856.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229185458|ref|ZP_04312640.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|296503743|ref|YP_003665443.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29896892|gb|AAP10170.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|118417752|gb|ABK86171.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026405|gb|EDX65073.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206735927|gb|EDZ53085.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218161711|gb|ACK61703.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228598046|gb|EEK55684.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228604004|gb|EEK61472.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228631956|gb|EEK88582.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228637647|gb|EEK94097.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228654706|gb|EEL10566.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666548|gb|EEL22006.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228679643|gb|EEL33840.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228685652|gb|EEL39575.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228702750|gb|EEL55215.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228712385|gb|EEL64330.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228806124|gb|EEM52700.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837590|gb|EEM82920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296324795|gb|ADH07723.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 64  VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221


>gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E       S + ++  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
              + I+  + +P+I ++   S Q  +  F SG DD + KP    E+             
Sbjct: 63  GAIKGIKKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ + +  +   + +         +     L  +E  IL  L  N+G+    ++I+  
Sbjct: 123 SVVEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F  +G  +    +      +  S   ++  ++  +        
Sbjct: 3   ILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMI--PYLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ + IR  S+VP+I ++     +  L  ++ G DD V KP   +    ++ A +     
Sbjct: 61  KVCKNIRELSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSII 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    N      + +     + ++ G+V  L  +E  +L + + N+   +++ ++   +
Sbjct: 121 DINEEKNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD       V++HI +LR+KL+NK   D + + R  GY  + N
Sbjct: 181 WG-FDYDGGLRTVDTHIKRLREKLKNK--ADYIVTVRGKGYKFEVN 223


>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
 gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   +     +       +   D+  ++  L   G    
Sbjct: 4   ILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLML--PGCSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P++ ++        +     G DD + KP    +++ARV +  +R + 
Sbjct: 62  DICRKIRDEIDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKRYER 121

Query: 122 SNNRAETGPIRVF-------------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              R +    +                        GE   LP RE  +L +L  N     
Sbjct: 122 LTTRHKEREEKENAQEQIKVEDVVIEPQTWRVWKAGEEVKLPHREFELLVFLAKNPNIVF 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +K  +F  I+G FD   +   V  HI++LR+KL +       +++    GY ++
Sbjct: 182 SKEALFEKIWG-FDYVSDAATVSVHINRLREKLEDDPRDPKIIETVWGAGYRLN 234


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + +          +G  +  F++      +      D+  ++  L   G   +
Sbjct: 5   ILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIML--PGLNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S +P+I ++    L+  +   D G DD + KP    E+LAR+ A  RR + 
Sbjct: 63  EVCSQIREFSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122

Query: 122 SNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +                D    +  GE   L ++E  +L YL+ N G  V++ ++ + ++
Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E N+V+ +I  LR K+ +      + + R +GY +
Sbjct: 183 G-YDYTGETNIVDVYIRYLRSKIDDPFSQKIIHTVRGVGYVL 223


>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
          Length = 223

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G       + E    +  +   D++ ++      G    
Sbjct: 5   IMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIM--MPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R + + P+I ++     +  L  F  G+DD V KP    E++ARV  I +R  +
Sbjct: 63  ELVEQMRQYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSI 122

Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++       +    D  +   Q +V  LP ++  +   L  N  +   + Q+   I+G+
Sbjct: 123 NSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+ HI ++R+ L +  GF  V + R LGY I+ 
Sbjct: 183 -DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKIEV 222


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +         G  +   +S      L  + R D   ++      G     
Sbjct: 24  LVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVM--MPGMDGFG 81

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           + R +RA     P + ++    LQ  +     G DD V KP        R  +    +  
Sbjct: 82  VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +R     I +  D  +    GE   L   E  +L Y M N G  ++K +I   
Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 202 VW-RYDFGGDVNVVESYVSYLRRKI-DNGEKRLLHTLRGVGYVL 243


>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +AL    G +               +   D+  I+           
Sbjct: 6   IMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVM--MPNMDGF 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R + +  P+I ++    L + +  F  G DD + KP    E++ARV A+ RR K
Sbjct: 64  ELCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYK 123

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++        +  +     + G    +P +E  ++  L    GK  ++ Q+   I+G
Sbjct: 124 IEASQVIQTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D    E  ++ H+++LR +   +     + + R LGY ++ 
Sbjct: 184 V-DFEGNERTLDVHVNRLRDRFPEETAGFKITTVRGLGYRLEV 225


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +   +S           R  +  ++  L     +  E
Sbjct: 9   LVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVML--PDMEGFE 66

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +    ++VP++ ++   +    +     G DD V KP    E++AR+  I RR  +
Sbjct: 67  VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTGM 126

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +            D R+    G    L   E R+L YLM N  + + + Q+   ++
Sbjct: 127 AEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  V+E+++S +RKKL +  G   + + R +GY++
Sbjct: 187 S-YDFGGDARVLETYVSYVRKKL-DAHGPPLIQTVRGVGYAL 226


>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
 gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYSF 227


>gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLE 62
           + +D   +          +G  +    + E         + D+  ++  L    G  + +
Sbjct: 7   IAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLSGVDICK 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
             +  +  + +P+I ++     +  L  FD+G DD V KP   +E+ AR+ +     + +
Sbjct: 67  NLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRSKPQ 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  E   +++    +          L   E ++L++ + N  +  ++ Q+ + ++G 
Sbjct: 127 SSVDVVEFTDLKIDRITKRVYRNNTEISLGPTEFKLLDFFIKNPKRVYSREQLLNNVWGE 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  VE   V+ HI +LR+ +  +     + + R  GYS++
Sbjct: 187 -NIYVESRTVDVHIRRLRQAINIENTKPLIRTVRSAGYSLE 226


>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
           transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
 gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
           transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R  R      +VP+I ++        +   ++GVDD V KP   RE+    R     
Sbjct: 63  DLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +     GPIR+           +  P+   E R+L + M +  +   + Q+   
Sbjct: 123 AREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGYRF 225


>gi|167551081|ref|ZP_02344836.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324105|gb|EDZ11944.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 240

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE    +  +    + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +          G+   L   E R+L+ L     K  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPSKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++  ++      L S    D+  ++  L   G   L
Sbjct: 3   ILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGML--PGIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +     G DD + KP    E++AR+  + RR   
Sbjct: 61  AVLAALRQTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSGP 120

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S  +              +    R     G+   L  +E  +L  L+  +G+ +++T++ 
Sbjct: 121 SVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTELA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 SQVWDM-NFDSETNVVEVAVRRLRLKLDQPFEKPLLHTVRGMGYVLE 226


>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae FF5]
 gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae 642]
 gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae Cit 7]
 gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 94_M4241A]
 gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T92]
 gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T17]
 gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis 210]
 gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN R506]
 gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN V2475]
 gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium bovis AF2122/97]
 gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis W-148]
 gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
          Length = 247

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++      G     
Sbjct: 24  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 81

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           + R +RA     P + ++   SLQ  +     G DD V KP        R  +    A  
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 202 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 243


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR    +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis
           HI4320]
 gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320]
 gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 235

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I          +              +  D+  ++  L   G+  +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLML--PGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            L + +R  S +P+I ++        L   + G DD + KP   RE++ARV   + R  +
Sbjct: 68  TLCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRYYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +    +  + +       +   ++  L   E R+++ L    GK +++ Q+   +Y  
Sbjct: 128 PQDIVQNSALVIIDEQAYQIQYHNKILDLTTAEFRLIKALATQPGKVLSRDQLMDHLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL       + + S    GY  +
Sbjct: 188 Y-RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWE 228


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++   A    +   +                      +   L+  G     
Sbjct: 5   LVVDDDPAIREVLAAYLARERFEVLEAEDGLQALE----QAPGADLVILDLMLPGMDGWR 60

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     +P++ ++     +  +  F+ G DD V KP   RE++ARV A+ RR+ +
Sbjct: 61  VAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRVGL 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +      R+  ++G+   L R E  +L  L  + G    + ++   ++G  
Sbjct: 121 KDELVYGPLVIR-PRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGPG 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V+  VV+ H++ LRKKL +       +++ R +GY  
Sbjct: 180 FEGVD-RVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRF 218


>gi|296118804|ref|ZP_06837380.1| DNA-binding response regulator MtrA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968293|gb|EFG81542.1| DNA-binding response regulator MtrA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G+                    D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLESEGLQPIPITDGNDAVPAFEQHNPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 63  DICRAIRRDSNVPIVMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRTET 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +++                         + E   L   E  +L  +    G+   + ++ 
Sbjct: 123 TSSEIIEVGDLLVDVSEHTVIRRPADGGEDEELSLTPLEFDLLVEMARKPGQVHTREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             ++G +  A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 EKVWG-YRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 227


>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL      + + + R +GY ++ 
Sbjct: 182 DFESDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          D  S++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRRVRQEQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELF-ARIRAVLRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I++  D  +  + GE     + E  +L  L  NR + + + QI   ++G +
Sbjct: 121 QKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPYGKDKTIETVRGVGYVI 218


>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 223

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         DG ++   +  E   +  S  + D+  ++          L
Sbjct: 5   ILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIM--MPKMNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+   +R  S VP+I ++     +  L+ ++ G DD + KP   + ++A+V A     R 
Sbjct: 63  EMLEKLREVSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTRE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++      + V     + +V   +  L  +E  +L YL+ N    +++  I   ++G
Sbjct: 123 DLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +   V+++I +LR+KL +K     + + R  GY  + 
Sbjct: 183 I-DYYGDIRTVDTNIKRLREKLLDKSA--YIVTVRGSGYKFEV 222


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G      N+             D+  ++  L       L
Sbjct: 4   ILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVML--PELNGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAA 114
           E+ + IR H++  P++ ++   +++  +   D G +D + KP           +  R + 
Sbjct: 62  EVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFSH 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S++      + +    R+         L  RE  +L + M +     ++ Q+ 
Sbjct: 122 KSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +A++G +D   + NVV+ ++  LR+KL   L     + + R +GY +
Sbjct: 182 NAVWG-YDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVL 227


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G + E          L +    D+  ++          +
Sbjct: 4   ILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLM--MPFMDGM 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++        L   + G DD V KP   RE++ARV A+  R  
Sbjct: 62  SCLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 121

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + + +     +V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 122 PRTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L    G   + +   +GY  D
Sbjct: 182 VW-NYDYFGEDRTVDTHVKMLRGHLGKCRG--YIATVWGIGYKFD 223


>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
 gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +E  N  +       +   D+  ++  L        
Sbjct: 4   ILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLML--PEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRQEKNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 RQIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|42519058|ref|NP_964988.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583345|gb|AAS08954.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      +         +  +  ++  L       +
Sbjct: 6   ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWML--PVYDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++         +  D G+DD + KP    E+ AR+  I RRL+ 
Sbjct: 64  TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              R      E   +++         +GE   L  +E  +L  LM +  K  ++ ++   
Sbjct: 124 EKRRVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   + N V+ +I  LR KL      + + + R  GY +
Sbjct: 184 VWG-YDFVGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|283832502|ref|ZP_06352243.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
 gi|291072167|gb|EFE10276.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
          Length = 240

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDLVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +         P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|166032214|ref|ZP_02235043.1| hypothetical protein DORFOR_01917 [Dorea formicigenerans ATCC
           27755]
 gi|166027937|gb|EDR46694.1| hypothetical protein DORFOR_01917 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       S      L    +   S I   L+  G    
Sbjct: 10  ILIVEDDTDINNLLYTALQKAGYETVQAFSGTEARMLFQMDKAGFSLILLDLMLPGISGE 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I ++    L   +    SG DD + KP   +E+LAR+    R ++ 
Sbjct: 70  EVLAQIRKQGNTPVIVLTAKDGLDEKIGLLTSGADDYITKPFEIQEVLARIQVQLRHMQQ 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      +  D    EV+        + ++E  ILE L+ +  +  +K +IF   +
Sbjct: 130 EPEHKSVSYKNLELDRERFEVRIAGVLLPKITKQEFAILELLLEHPKQVFSKEEIFEYAW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +RKK++     + +D+   +GY +
Sbjct: 190 DEH-YMGETKTLDVHISNIRKKIKAVTQEEYIDTVWGIGYRL 230


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 15  ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+         
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        N  E G ++V    R   +  E   L  RE  +LE L+ N+G  +   QI+
Sbjct: 133 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241


>gi|328914028|gb|AEB65624.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           LL3]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G              +    + DV  ++  L        
Sbjct: 4   IMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINL--PSYDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR HS  P+I IS        +   ++G DD + KP  +  +        R A  
Sbjct: 62  YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      E   +++F +  +   Q E   L ++E ++LE L+    K   + ++  
Sbjct: 122 EYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTGRDRLME 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   D  V++N +  +I++LRKKLR       ++S R +GY +
Sbjct: 182 KTWDT-DIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGVGYQL 225


>gi|322387460|ref|ZP_08061070.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141989|gb|EFX37484.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 218

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G                S+ +  +  ++          L
Sbjct: 3   ILIVEDEDMIREGISDYLTDCGYETIQAADGLEALKQFSNHQVALVLLDI--QMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F +  D  + KP     +  RV AI++R   
Sbjct: 61  EVLSEIRKSSQVPVLMLTAFQDEEYKMSAFAALADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  D    +V G+   +  +E  IL+YL+ N G+ + ++QI  A++ + 
Sbjct: 121 TGRIFTYRDTQVDFDSYSAKVAGQEVAVNAKELEILDYLVKNEGRALTRSQIIDAVWKMT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216


>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I+V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +         +      +    L       +  ++  L        
Sbjct: 6   ILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVML--PDMDGF 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R  H  +P+I +S        +   + G DD + KP +  E+ AR+ ++ RR  
Sbjct: 64  EICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTS 123

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +         GP  +    +     G +  L  RE +++++ +  R + V + ++  
Sbjct: 124 RNTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++GL +   +   V+ HI +LR+K+ +       + +    GY  
Sbjct: 184 EVWGL-NYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCF 228


>gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
 gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S E      ++   D++ +   ++  G    
Sbjct: 4   ILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTN-PDIALMILDVMMPGMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  + +P++ +S        +    +G DD V KP +  E++ARV ++ RR   
Sbjct: 63  DVVKAVRKDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSSN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I   +   + +             L   E  IL  L ++  +  +  +IF 
Sbjct: 123 EVKDEIPEVIDAGALTINKDSHEVKTSDGEIVQLTALEFGILYLLASHPNRVFSADEIFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            ++   +  V    V  H+S LR K++    G + + +   +GY ++ N
Sbjct: 183 RVW-QTESVVSAKTVMVHVSHLRDKIKEATNGDEVIQTVWGVGYKVEIN 230


>gi|296129072|ref|YP_003636322.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020887|gb|ADG74123.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 256

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 19/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     +G ++E            +  + DV  ++  L   G   LE
Sbjct: 20  LVVEDEPAIAQAIVHRLTAEGWTVEAVGDGHAGVAAAARLQPDVVVLDVML--PGIDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110
           + R I+A   VP++ ++        L     G DD + KP   RE+             A
Sbjct: 78  VCRQIQAERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKVLLRRTERA 137

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             AA    ++  +     G + + S  R  +  G    L   E  +L  L ++    + +
Sbjct: 138 ARAAERATVQQPDPPLVVGDVTIDSAQRRVQRAGTEVHLTPTEFDLLLTLASSPRTVLTR 197

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + ++   D +     V+SH+  LR+KL    G D + +   +GY+ +
Sbjct: 198 ERLLADVWDWVDASG-TRTVDSHVKALRRKL----GPDLIRTVHGVGYAYE 243


>gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  + +        + G  ++  +  +   +        +  ++  L    G  V
Sbjct: 3   ILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLPKLDGMTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R   A   +P++ +S   S+   +     G DD + KP    E+LARV  + RR  
Sbjct: 63  LNTLRS--AQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++  +     +   +++    R     G    L  +E +IL YLM +  + V +T +F A
Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NV++ H+++LRKK+        +++ R +GY +
Sbjct: 181 VWD-YDFDPQTNVIDVHVARLRKKVETDDLPPILETIRGVGYRL 223


>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
 gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +       D G  +      +    L      D   ++  L   G   L
Sbjct: 6   ILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLML--PGVDGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P+I IS   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 64  DICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQE 123

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + +    R   V      L  RE  +L +   + G+  ++ Q+
Sbjct: 124 AMGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+ +       + +    GY  
Sbjct: 184 LDKVWG-YQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGYKF 230


>gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 239

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D  +    + G  +E     E      +S   DV  ++  L   G   L 
Sbjct: 20  LLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIML--PGRDGLS 77

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +R      P+I ++    L   L+  + G DD + KP +  E++AR+ A   R   
Sbjct: 78  ILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSG 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  + G + V    R+    GE+  L  RE  +LEYLM + G+ + +TQI   ++G 
Sbjct: 138 KSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG- 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+  + +LRKK+        +++ R  GY +
Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236


>gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +  G   L    G  +    SL      LQ+     +  ++  L       
Sbjct: 4   ILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLML--PDGDG 61

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R IR   Q  P++ +S    LQ  ++    G DD + KP    E++ARV AI R  
Sbjct: 62  FELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILRLA 121

Query: 120 KVSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       +      R   + +      ++  L  +E  +L  LM        +  +   
Sbjct: 122 QHQRETIGSFECGKLRFDCELQRAWWDEQLLELTPKESGVLLQLMRQPSHVWGRLALLQT 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  +   +  +V+  + +LR K+       DP+ + R  GY +
Sbjct: 182 VWGT-NFLGDSRIVDVCVQRLRAKINQLDANADPIQTVRGFGYRL 225


>gi|77411963|ref|ZP_00788293.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           CJB111]
 gi|77161989|gb|EAO72970.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           CJB111]
 gi|319745956|gb|EFV98239.1| phosphate regulon response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D A +++  +      G + +GF+S E           D+  ++  L G  G  
Sbjct: 1   MIYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +LE  R       +P+I  +   S    +   D G DD + KP    E+++R+ A     
Sbjct: 61  ILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R   S      G + +       +   E   L  +E  +L     N  +   + ++   +
Sbjct: 121 RQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G      E   V+ HI  LR KL        + + R +GY ++ 
Sbjct: 181 WGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEE 222


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 32  ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLML--PKKDGL 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 90  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 149

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G+   L  RE  +L YL  + G+ + +
Sbjct: 150 VKKAEAATQEEADKNIKIGNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTR 209

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 210 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILITRRGVGY 257


>gi|229824732|ref|ZP_04450801.1| hypothetical protein GCWU000182_00080 [Abiotrophia defectiva ATCC
           49176]
 gi|229791061|gb|EEP27175.1| hypothetical protein GCWU000182_00080 [Abiotrophia defectiva ATCC
           49176]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    ++     + ++   D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLAYNLTADGYEVTSALNVRTATEILNAHEFDLVLLDVNL--PDGNGY 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           +L R+I        +I ++        +  ++ G  D + KP      +  +  +  +  
Sbjct: 62  DLCRLIKPEQPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFTMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQAATLNGKPLALSPMEYKMLNLFRKNPKQVLTRQQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +   +  V+E+ + + IS++R K+    G   + +   +GY 
Sbjct: 182 WDAEERFVDEHTLTTSISRIRSKIETDGGAPYIKTIYGMGYQ 223


>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  +V +        +G  +   +  +    +      DV  ++  L   G+  L 
Sbjct: 8   LVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIML--PGKDGLT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           L R +R    +P+I ++        +   + G DD ++KP   R     I A +      
Sbjct: 66  LCRSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRTQAV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+N + +   + + +D R   V  E   L  RE  +L +L  N  +   + ++ +A++
Sbjct: 126 EGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLAAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   ++  V+ HI +LR KL   L  + + +   +GY  
Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKL-VSLQHEYLSTVWGVGYQF 225


>gi|153814388|ref|ZP_01967056.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
 gi|145848784|gb|EDK25702.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G       S      +    R  V  ++  L   G    E
Sbjct: 12  LIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLML--PGIPGEE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR     P+I ++   ++   ++F   G DD V KP   +E+ ARV    RR + +
Sbjct: 70  VLRDIRKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 129

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E           +               + ++E  ILE L+ +  K  +K ++F  
Sbjct: 130 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 190 AW-EEQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 232


>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D + +++         G  +      +         +  +  ++  L G  G + 
Sbjct: 4   ILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKL-VEKPQLILLDWMLPGRSGIQF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
           ++  +       +P+I ++     +  +   ++G DD + KP      +    A + R  
Sbjct: 63  IQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAMLRRVY 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S N  E   + +  +      Q  V  L   E ++L++LM +  K   + Q+   I+G
Sbjct: 123 EQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLDCIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE+  V+S+I +LRK L        + + R  GY  
Sbjct: 183 N-DIYVEDRTVDSYIRRLRKSLEQYGFDRYIQTVRGAGYRF 222


>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 239

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++      G +G  +    +        ++   D+  ++      GE  L
Sbjct: 7   LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR+  
Sbjct: 65  SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
              R        ++         E           PL   E  ++        + +++ Q
Sbjct: 125 GGQRVTAPDGATYAFANWLLKTQERTLVDSEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ IS+LRKK+  +      + +    GY++
Sbjct: 185 LLDITQGREANAFD-RAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 232


>gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E             + + D+  ++           
Sbjct: 4   LLVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLETFKADLVILDVM--MPNMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R +   +PL+ ++        +  FD G DD V KP    E++ARV A+ +R +
Sbjct: 62  RLCQELRDYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +        +      + G+    LP +E  +L  L +  G+ + + Q+  AI+G
Sbjct: 122 IAVSSSVQIGAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D    E  ++ HI++LR++         + + R LGY ++
Sbjct: 182 I-DFEGNERTLDVHINRLRERFPEAEAGFRIATVRGLGYRME 222


>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+    + E      ++ + D+  ++  L   G   +
Sbjct: 6   ILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLML--PGIDGV 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RV 112
           E+ + IR       +P+I ++        +   + G DD + KP   + ++A      R 
Sbjct: 64  EVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +               I + +   + +       L   E  ILE+L  N G   +++Q
Sbjct: 124 KQLKEFPPREEPVITIHDIVIDTIRHEVKCSDVSLDLSVTEFSILEFLARNPGWVFSRSQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A+ G  D  V E  V+  I  LRKKL++K   D +++ R +GY +
Sbjct: 184 IIGAVKGE-DYPVTERSVDVQILGLRKKLKDKG--DYIETVRGVGYRM 228


>gi|255535917|ref|YP_003096288.1| Phosphate regulon transcriptional regulatory protein phoB
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342113|gb|ACU08226.1| Phosphate regulon transcriptional regulatory protein phoB
           [Flavobacteriaceae bacterium 3519-10]
          Length = 227

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD   + +        +G  +    +             D+  ++  +    G + 
Sbjct: 8   ILLIDDEQDILEILSYNLQKEGYEVHTAQNGNEGIQKAKEIVPDLILLDVMMPEKDGIET 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +  R +    +  ++ +S      + L  F +G +D + K I  + ++++V     +  
Sbjct: 68  CQDLRKLPDLQKTLIVFLSARSEEFSQLAGFQAGANDYIVKIIKPKVLISKVNALLQLTS 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  S      G + +  D       G+ F LP++E  +L  L +N  K   + +I   +
Sbjct: 128 NVYDSKKTITAGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTNKVFKREEILEKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V E  ++ HI +LR+KL    G   + + + +GY +
Sbjct: 188 WGN-DVIVGERTIDVHIRRLREKL----GIGTIQTLKGIGYKL 225


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E    IR    +P+I +S        +    SG DD ++KP +        +  L R   
Sbjct: 63  EACLKIREEQTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKK 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N  E   + + SD R   V+ +   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++         N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +      +           D   ++  L   G   L
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLML--PGVDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R IR  ++  P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 63  EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ + L +   R     + +    R+ +++GEV  L  RE  +L Y   + G+  ++  +
Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +    D + +    GY  
Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229


>gi|73661850|ref|YP_300631.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643287|sp|Q49ZT8|HSSR_STAS1 RecName: Full=Heme response regulator hssR
 gi|72494365|dbj|BAE17686.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +       +S E       + + D++ ++  +        E
Sbjct: 5   LIVDDDPKILEYVSKYIEREHFETIVQSSAENALSYLETHQVDIAIVDVMMG--KMSGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I++    +P+I ++   +L      + +G DD V KP   +E++ R+ A+ +R  V+
Sbjct: 63  LCKILKEDFDIPVIMLTARDALSDKEQAYLTGTDDYVTKPFEVKELMFRIKAVLKRYNVN 122

Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N   +      +    + +   +   LP +E ++L  L +N  +   +  +   I+G F
Sbjct: 123 INNEVSIGNLTLNQSYLEIQSSSKSMNLPNKEFQLLFLLASNPRQVFNRDALIEKIWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LRK+L        + + R LGY +D
Sbjct: 182 DYEGDERTVDVHIKRLRKRLEKIDASVTIHTVRGLGYKVD 221


>gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++   +              +   D+  ++          +
Sbjct: 7   ILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIM--MPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
                IR   ++P+I +S        +   + G DD V KP +        +  + R  +
Sbjct: 65  RTCLKIREEKKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRTTS 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +++      + + +  R+  V  +   L  RE  IL+ L  N G+ ++  QI+
Sbjct: 125 FNEPREENDDEICIDGLVINTANREVFVDDKFVRLTPREFEILKVLATNIGRVLSTEQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++        +N V  HI  +R+K+  N      +     +GY ID 
Sbjct: 185 ENVWDEP-FFNSDNTVAVHIRNIREKIEINPKEPKYIKLVWGVGYKIDK 232


>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ DD     +         G ++           +    + D+  ++  +    G +V
Sbjct: 6   ILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
             L R       +P+I +S            D+G DD + KP   RE+++RV A     R
Sbjct: 66  CRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRRAR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++++  E   +++F    +    G+  PL  +E ++L  L    G+  ++  +   ++
Sbjct: 126 PALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKL-----RNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ H S+LRK +      N    + + + R  GY++
Sbjct: 186 G-HGVFVEERTVDVHFSRLRKAINGAASDNDKRPNLIRTVRGGGYAL 231


>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G         +       +   D+  +   ++      +
Sbjct: 3   ILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTT-PDIELLILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K+
Sbjct: 62  QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +         I          + G    L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QAPSNQPDILEVSSLIINRDSHEVKTITGNEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-KQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 227


>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMRNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+   +      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEEDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 299

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F   E           D++ ++          L
Sbjct: 73  ILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIM--MPKISGL 130

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 131 ELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 190

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E   + +     +  +   +  L   E  IL  L   +G  V+  ++F
Sbjct: 191 YNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELF 250

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             I+     +   N +  HI  LR+K+ +       + +    GY I+ 
Sbjct: 251 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 299


>gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +   N+ E    L  S   D+  ++           
Sbjct: 4   ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIM--MPKMDGH 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            L   I+      P + +S     +  L     G DD ++KP   RE++ RV       +
Sbjct: 62  TLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRTK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R   V  E   L  +E  +L  L +   +  +K+++   ++
Sbjct: 122 RSSEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           G ++   + N +  HI  LR+KL+        + +   LGY  +
Sbjct: 182 G-YEYDGDANTINVHIHHLREKLQXXDEKVIFIKTVWGLGYKFE 224


>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G+ +      +  + L      D+  ++      GE  L
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  V
Sbjct: 66  TLCRELRAKSCMPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTNV 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
               A     R     R                   L   E  +L   +    + +++ Q
Sbjct: 126 EPQPAPETLTRDLRFDRWLLDINRRELVDEEGVGLSLSTAEFDLLRVFLERPQRVLSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ +S+LR+KL  +    + + +    GY  
Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYLF 233


>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL      + + + R +GY ++ 
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218


>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G      ++ +    +    + D+  ++  L G G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPG-GTSGI 64

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++     S +P+I ++        +   + GVDD + KP   RE++AR+ A    
Sbjct: 65  ELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S +  E G + +        + G    +   E R+L++ M ++ +   + Q+   
Sbjct: 125 AGPADSESPIEIGGLLLDPISHRVTIDGTPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 185 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NMVQTVRGTGYRF 226


>gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            ++               + D+  ++  L        
Sbjct: 4   ILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVML--PKMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ RII     VP++ +S        +     G DD + KP    E++ARV +  +  + 
Sbjct: 62  DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N+                   D R   +  +   L ++E  +L ++     +   K +
Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F +I+GL D   +   V  HI ++R+K+  N      +++   +GY I
Sbjct: 182 LFESIWGL-DSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229


>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D  +     +G  +   +S +      + +  D+  ++  L         
Sbjct: 21  LVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVML--PDIDGFM 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R +   +P + ++   + +  +     G DD V KP    E++ARV AI RR   
Sbjct: 79  LCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAGA 138

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++              + R+    G    L   E R+L YL+AN  K + + Q+   ++
Sbjct: 139 ADSTPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLLDHVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   E  V+E+++S LR+K+ + +    + + R +GY +
Sbjct: 199 G-HDFGGEARVLETYVSYLRRKI-DPVPPSLIHTVRGVGYVL 238


>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241


>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  +      E    L      D++ ++  +        
Sbjct: 4   ILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMV--PKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R IR  S++P+I ++   +    L  FD G D+ + KP   + +LARV      +  
Sbjct: 62  TICRKIRKESKIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   N  + G + + S         E+  L  +E  +L  ++ N+   +++ +  + I+G
Sbjct: 122 KTEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD   +   V++H+ +LRKKL+ K     + + R +GY  + 
Sbjct: 182 -FDYYGDLRTVDTHVKQLRKKLKGK----HIKTVRGVGYRFEE 219


>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 237

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +   +    S +       + R  +  ++  L   G   L
Sbjct: 7   ILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIML--PGMDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ R +R     + +I ++        +   + G DD V KP +       I A +  + 
Sbjct: 65  EVCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQ 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++     G  R+    +      +   L  RE  +++  + N  + +++  + + 
Sbjct: 125 TDRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            +G  D   +   V+ HI +LR+K+ +       +++   +GY 
Sbjct: 185 AWGE-DFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYR 227


>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 7/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A + +         G S    +  E    L  S   D   ++  L        E
Sbjct: 8   LIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIML--PKLNGWE 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + + I      VP+I ++        +   + G DD + KP    E++ARV  + RR   
Sbjct: 66  VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R +   I +        +  E   +  +E  +  YL  N  + + + Q+   ++
Sbjct: 126 SESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G ++   +   V+ HI ++R KL        + + R +GY  + N
Sbjct: 186 G-YEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEEN 229


>gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++D        +  ++   +  +    +    + D+  ++          +
Sbjct: 3   ILIAEDEKDIRDLISLHMKKENHNVFEASDGKEALDIFECEKIDLILVDIM--MPKINGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I I+   S    +     G DD + KPI   E+ ARV++  RR   
Sbjct: 61  AVIQKVRESSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCYR 120

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E           SD  +     +   L  +E +IL+ L++N G+   K QI+  +
Sbjct: 121 YTENREDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G      + N +  H+S +R+K+ +       + + R +GY I+
Sbjct: 181 WGEI-YIGDSNNIMVHLSHIREKIEDDPKNPVYIKTIRGIGYKIE 224


>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +E   + E    +      D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVML--PKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 237

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +           +    + D   ++  L       +
Sbjct: 4   ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLML--PKLDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR    + P++ ++   +    +   + G DD V KP   REI+AR+ AI RR  
Sbjct: 62  AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +                       +       L  +E  +L Y M    K  ++ +
Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +A++G FD   E  +V+  +S LR+K+ +       + + R  GY ++
Sbjct: 182 LLNAVWG-FDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230


>gi|330963562|gb|EGH63822.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S     +         ++   +  ++  L   G   +
Sbjct: 7   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASAPQLILLDIML--PGRDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I I+        L   D G DD + KP   RE +        R   
Sbjct: 65  DICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +      ++V  +       G    L   E R+L     + G+  ++ Q+   +Y   
Sbjct: 124 ATDPLAAKGLQVDEEHYQASFNGVALDLTPVELRLLATFARSPGRVFSRDQLLDRLYSDH 183

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 223


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G +G S +          L  +   D   ++  L       +
Sbjct: 5   ILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIML--PQLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+ + +RA     P++ +S        +   + G DD + KP   R             +
Sbjct: 63  EVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTS 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +           ++    G + V+ D  +      +  L  +E  +L YLM +    + +
Sbjct: 123 KEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR K+ +       + + R  GY  
Sbjct: 183 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKF 232


>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    L      D+  ++      GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + R +R A+ + P+I ++        +   + G DD + KP + RE             
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 AQEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
 gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRNKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++             R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227


>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
 gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
          Length = 240

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A +++   A     G      ++ +    +    + D+  ++  +    G + 
Sbjct: 11  ILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQVSGVEF 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +     +++P+I ++        +   ++G DD + KP   RE++AR+ A      
Sbjct: 71  ARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLRRST 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E   +++  +       G+   +   E R+L++ M++  +   + Q+   ++
Sbjct: 131 PAGIDEPIEINGLKLDPNSHRITAHGDELSMGPTEFRLLQFFMSHAERAYTRGQLLDQVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  V+E  V+ HI +LRK L ++     + + R  GY  
Sbjct: 191 G-GNVYVDERTVDVHIRRLRKGLGDEF-KSLIQTVRGTGYRF 230


>gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 82/225 (36%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++   ++   +         +   D++ ++  L        
Sbjct: 5   ILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVML--PDMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
            + R IR +   P+I ++        ++    G DD + KP        R          
Sbjct: 63  SICRTIRQNYTWPIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRRYKR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++          + +  +     +  +   L   E R+L YL   +GK V+  ++++A
Sbjct: 123 YNVQQKAKELSYLGLVMNQEQHICRLNEKDLNLTPIEFRLLWYLCERQGKVVSARELYTA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+     +   N +  HI  +R+K++++      + +   +GY +
Sbjct: 183 IWQEEYLSSSNNTLMVHIRHIREKMKDRGEHPRYIQNVWGVGYKL 227


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +E     +  E   S +  D+  ++  L   G   L
Sbjct: 20  ILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLPDLVILDWML--PGVSGL 77

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E+ R +RA      +P+I ++        +     G DD V KP    E++ARV A    
Sbjct: 78  EICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRR 137

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R +    R   G I +  + R  +  G    L   E R+LEYLM   G+  ++ Q+  +
Sbjct: 138 ARPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLDS 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++GL  E ++E  V+ H+ +LRK +      DP+ + R  GYS D 
Sbjct: 198 VWGLSAE-IDERTVDVHVGRLRKAIIRGREKDPIRTVRGTGYSFDE 242


>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
 gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
          Length = 250

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F   E           D++ ++           
Sbjct: 26  ILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIM--MPKINGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ ++IR     P+I ++        +     G DD + KP +  E+        R    
Sbjct: 84  EICKMIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYTK 143

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y +   + N  +   + + +D     +  +   L   E  IL YL  NRGK V   ++F 
Sbjct: 144 YNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELFE 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           A++         N V  HI +LR+K+         + +   +GY I+ 
Sbjct: 204 AVWKEKYFD-SNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 250


>gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
 gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D   +  + +             D++ ++  L        
Sbjct: 5   ILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR +   P+I ++        +     G DD + KP +  E++ARV    RR + 
Sbjct: 63  RICQKIRENYYFPVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRRYQK 122

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN  +               +  D     + G+   L   E  IL YL  ++GK V+  
Sbjct: 123 YNNPTKKQFFPKSEYDIRGLIINKDTHKCFLFGKEISLTPIEFSILWYLCEHQGKVVSTE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++F  I+         N V +HI +LR+KL         + +   +GY I+
Sbjct: 183 ELFENIWKEKYLD-NNNTVMAHIGRLREKLNEPAKNPKFIKTVWGVGYEIE 232


>gi|15827334|ref|NP_301597.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229812|ref|YP_002503228.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|13092883|emb|CAC30282.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932919|emb|CAR70867.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G                   R D+  ++  L   G   +
Sbjct: 8   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 66  DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|313207136|ref|YP_004046313.1| two component transcriptional regulator, winged helix family
           [Riemerella anatipestifer DSM 15868]
 gi|312446452|gb|ADQ82807.1| two component transcriptional regulator, winged helix family
           [Riemerella anatipestifer DSM 15868]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD   + +        +G  +   N+              +  ++  +    G + 
Sbjct: 6   ILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDKDGIET 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYR 117
            +  R I       ++ +S      + L  + +G +D +    KP      +  +  + +
Sbjct: 66  CQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKVNALMNLTQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +++  N   + G + +  D        E F LP++E  +L  L +N  K   + +I   +
Sbjct: 126 QVEEKNKILKIGHLIIDRDNFKVTKGDESFILPKKEFDLLNLLASNTEKVFKREEILEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V E  ++ HI +LR+KL +K     + + + +GY +
Sbjct: 186 WGN-DVVVGERTIDVHIRRLREKLGSKS----IQTLKGIGYKL 223


>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius CECT 5713]
          Length = 233

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++  N+         + + D   ++  L   G   +E
Sbjct: 5   LVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLML--PGIDGIE 62

Query: 63  LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR       I  ++        +   + G DD + KP   REI+AR+ A+ RR++ 
Sbjct: 63  VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ +E      +  G            +    +  L  +E  +L Y +  +G+ + + +
Sbjct: 123 YSDNSEKDSKNKYYFGNYVVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + + ++G FD   +  +V+ H+S LR+K+         + + R  GY  +
Sbjct: 183 LLNNVWG-FDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFE 231


>gi|258654371|ref|YP_003203527.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557596|gb|ACV80538.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                     D+  ++  L   G   L+
Sbjct: 6   LVVDDDPALAEMLTIVLRGEGFDTAVVRDGSKAVDAFRDVHPDLVLLDLML--PGVSGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S +P+I ++        +   +SG DD V KP   +E+ AR+ A  RR  V 
Sbjct: 64  VCKEIRAESGIPIIMLTAKTDTVDVVLGLESGADDYVMKPFKPKELTARIRARLRRADVG 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        + +   G      GE   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 SAERLRVADVDIDVPGHQVTRDGEPISLTPLEFDLLVALARKPRQVFTREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEVVVTVRGVGYR 221


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIM--MPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                V +D R   ++G+   L  +E  ILE L +N+G  ++  +I+
Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E  +       L       +  ++  L       L
Sbjct: 5   IIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLML--PELDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR+ 
Sbjct: 63  EVCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMN 122

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 E     +         D  +     E   L  +E  +L YL  N+G+ + + Q+
Sbjct: 123 QQTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            SAI+  +D   +  +V+ HIS +R+K+         + + R LGY ++ 
Sbjct: 183 LSAIW-NYDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKMEE 231


>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 85/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIML--PGVDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ + + +    + +I ++        +   + G DD + KP +       I A +  + 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++             +   ++ E    +   +  D+  I   ++       
Sbjct: 12  ILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESN-DIDLIILDVMMPKMDGW 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S+VP+I ++        L  F+ GVD+ ++KP   R ++ARV AI RR   
Sbjct: 71  EACREIRKISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRRTNN 130

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +        V+GE   L  +E  +L Y + N+G  +++  I + ++ 
Sbjct: 131 IGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNNVW- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL        + +   +GY  + N
Sbjct: 190 NYDYFGDARTIDTHVKKLRNKLGECG--KYIVTIWGMGYKFEVN 231


>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 250

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + D         G  +         + L      D+  ++  L    G  V
Sbjct: 4   ILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S++P++ ++     Q  ++ F++G DD + KP   +E+L RV A+ RR  
Sbjct: 64  CQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRSD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+ G I  +       +  +    G+   L   E  +L  LM   G+ V+ ++I 
Sbjct: 124 RIPQAAKHGEILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 QEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  +           L  S + D+  ++  L       +
Sbjct: 5   ILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVML--PRLNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IRA    P+I I+   S+   +   D+G DD + KP    E+    R        
Sbjct: 63  EVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        + V    R  +   E   L +RE  +L   M N    + +  +   ++G
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ ++  LR+KL        + + R  GY +
Sbjct: 183 -FDAEVETNVVDVYVRYLRQKLDEHDKERYIQTVRGTGYVM 222


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +K+        +G  ++  ++ E    L      D+  ++          +
Sbjct: 5   ILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIM--MPKLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
                IR    +P+I +S        +     G DD ++KP    E+        R    
Sbjct: 63  LTCIKIREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  + +S N  E   + +  D  +  V+GE   L  +E  ILE L  N+G   +  +++ 
Sbjct: 123 FNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++      V +  V  HI+ +R+K+  +      + +   +GY I
Sbjct: 183 TVWKEK-FVVSDTSVVVHITNIRQKIEIDPKAPQYIKTVWGVGYKI 227


>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 90/218 (41%), Gaps = 4/218 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++        +G                   + D+  ++           ++  
Sbjct: 2   DDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGFDVCF 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ ++
Sbjct: 60  ELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQ 119

Query: 126 AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +      +      +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G +D  
Sbjct: 120 SIQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFE 178

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 179 GNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 216


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +   +S +      + +  D+  ++  L         
Sbjct: 21  LVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVML--PDIDGFA 78

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R   Q VP + ++   + +  +     G DD V KP    E++ARV AI RR   
Sbjct: 79  VCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAGA 138

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++               + R+    G    L   E R+L YL+AN  K + + Q+   ++
Sbjct: 139 ADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   +  V+E+++S LR+K+ +      + + R +GY +
Sbjct: 199 G-HDFGGDARVLETYVSYLRRKIDDVP-PPLIHTVRGVGYVL 238


>gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121]
 gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121]
          Length = 226

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V     +     G  ++     +      S    D   ++  L   G   L 
Sbjct: 4   LVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRML--PGLDGLN 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +RA  S VP++ +S    +   ++   +G DD + KP    E+ AR+  ++RR   
Sbjct: 62  LLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNTH 121

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +            ++ +    +  L  RE R+LEYL+ N+ + V +T +  +++
Sbjct: 122 ESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 182 D-YHFDPQTNVIDVHISRLRNKIDKPFSQVLIHTIRGRGYVI 222


>gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G         +    + +    D   ++       +    
Sbjct: 7   LIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVM--MPNQDGFS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           +   IR  S VP++ ++        +  F  G DD + KP    E++AR+        R 
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLRRTWRG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + + + G + +   GR   V  E   L  +E  +L +L  + G+  ++  +   ++G
Sbjct: 125 RERDGQLQFGNLAIDEKGRKVTVGSEPVRLTLKEFELLLFLAKHHGQVFSRDDLLVNVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKDAG--RYIQTVWGIGYKFE 223


>gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +   NS E    L  +    ++ ++      G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGFKVFKANSAEDGLKLIENEDIHLAILDIM--MPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRETHNFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQ 123

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        N      + +  D     ++G    L   E  IL  L +N G+  + 
Sbjct: 124 LNPNSSVIDKDDPNEIRLKGMSINKDNHKVIIEGNEVKLTPIEFDILYLLASNAGRVFST 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +IF  ++         N V  HI +LR K+  ++     + +   +GY I+
Sbjct: 184 DEIFEKVWNEKVYEAN-NTVMVHIRRLRGKMNEDERENKIITTVWGVGYKIE 234


>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 233

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  L   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVML--PGMDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRRFGHA 124

Query: 123 NNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                                     ++G +    G    L   E R+L    +  G  +
Sbjct: 125 GGPGAGEHGEETPDGGLLAFGDLEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGTVL 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 SRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 231


>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
           elongata DSM 2581]
 gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Halomonas elongata DSM 2581]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++            +   ++ +    +    + D+  ++      G   +E
Sbjct: 7   LIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWM--MPGTSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++     +++P+I ++        +   D+G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRRS 124

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +        V G    +   E R+L++ M ++ +   + Q+   +
Sbjct: 125 TPHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAYTRGQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKALGDPY-QQLIQTVRGTGYRF 225


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++  N  +       +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIML--PHINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRRIRQQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEEL-FARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +  +  V G    L + E  +L  L  NR   + + QI   ++G +
Sbjct: 121 QKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPFNKERTIETVRGVGYVI 218


>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    DG  +    + +            +  ++  L        
Sbjct: 8   ILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLML--PDISGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +S VP+I ++   S    +   D G DD V KP   R++LARVAA+ RR+  
Sbjct: 66  EICKRIRKNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRVVK 125

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + + +   +    G    +   E RIL  +     K   + ++ +
Sbjct: 126 EPVADTGKIIFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDELIN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              G  D    +  V++HI  LR+K+ +       + +   +GY  
Sbjct: 186 MALG-DDFEGFDRTVDTHIKNLRQKIEDDPKTPRYLVTVHGIGYRF 230


>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
 gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
          Length = 246

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  +    D   ++  L   G    E
Sbjct: 4   LVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLML--PGIDGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +RA H   P++ ++    +   +   D+G DD + KP    E+ AR+ A + R   
Sbjct: 62  VCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGAV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      GE   L  +E  +L  L+ +  + + +T I   ++  
Sbjct: 122 HRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  N+V+ ++  LR+K+        +++ R +GY +
Sbjct: 181 DAFDATSNIVDQYVRYLRRKIDLPPAPSLIETVRGVGYRL 220


>gi|77409125|ref|ZP_00785839.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           COH1]
 gi|77172253|gb|EAO75408.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           COH1]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D A +++  +      G + +GF+S E           D+  ++  L G  G  
Sbjct: 1   MIYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAVQEKVPDLILLDIMLPGDDGLT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +LE  R       +P+I  +   S    +   D G DD + KP    E+++R+ A     
Sbjct: 61  ILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R   S      G + +       +   E   L  +E  +L     N  +   + ++   +
Sbjct: 121 RQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G      E   V+ HI  LR KL        + + R +GY ++ 
Sbjct: 181 WGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEE 222


>gi|331699748|ref|YP_004335987.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954437|gb|AEA28134.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 259

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        D+G ++   +S E    L +    D   ++  L   G   L 
Sbjct: 30  LVVDDDGRIRQALSLALDDEGFAVSTASSGEEAMTLLARDPVDTVLLDLML--PGTDGLT 87

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP------IHHREILARVAAIY 116
           + R +RA   +P+I ++        +   ++G DD V+KP            L R     
Sbjct: 88  VCRRLRARGDLPIIIVTARSESAEVIAGLEAGADDYVSKPVVAGELAARIRALVRRRRPD 147

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                   +       L R E R+L  L    GK V +  +   
Sbjct: 148 TAAATLTIGDVEVRPDEGVVRCHRDGGTADVHLTRTEFRLLVELAVAGGKVVTREDLLRR 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++  +D   +  +++ HI +LR K+  +      V + R  GY 
Sbjct: 208 VWD-YDYLGDTRLLDVHIRRLRCKIERDPDHPALVLTVRGSGYR 250


>gi|306835487|ref|ZP_07468504.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304568653|gb|EFM44201.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G++                   D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLESEGLNPVPVMDGNDAVPAFREHEPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRTIRRESAVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          +         + +     L   E  +L  +  + G+   +  +  +++G
Sbjct: 123 AEPETLEVADLIIDVPEHTVRRTDGTELNLTPLEFDLLLEMARHPGQVHTRESLLESVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             + A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 YRN-ASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222


>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKRLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SKIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|134096719|ref|YP_001102380.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009616|ref|ZP_06567589.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909342|emb|CAL99454.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +          +G +       +       +   D+  ++  L   G+   
Sbjct: 4   ILIAEDEARIAAFIEKGLRANGFTTTVVGDGDTALDYVLTGDFDLVVLDLGL--PGKDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    VP+I ++   S+  T+   + G DD + KP    E+LARV    R   
Sbjct: 62  AVLRALRAQRVTVPVIILTARDSVHDTVAGLEGGADDYMTKPFRFEELLARVRLRLRPTD 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R  +V      L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTVLRDGELSLDLRTRRAQVPEGTVDLTAREFSMLELFLRHSGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     NVV+ ++  LR+K+    G   + + R +GY +
Sbjct: 182 G-YDFDPGSNVVDVYVRALRRKI----GSTRIHTVRGMGYRL 218


>gi|189425983|ref|YP_001953160.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422242|gb|ACD96640.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 233

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A        +   ++         +       ++  L    +   
Sbjct: 5   ILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGL--PDKSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + ++     P+I ++   S +  +  F  G DD V KP   RE++ RV A+ +R   
Sbjct: 63  ELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYDG 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +                 S       +GE   +   E ++L+ L A+ G+  ++ ++ S 
Sbjct: 123 AGAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDELVSK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             G +     E  V++HI  LR+K+  +    + + +   +GY  
Sbjct: 183 ALG-YQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLF 226


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +  +      ++   D++ +   ++      L
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTN-PDIALMVLDVMMPNMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVVKIVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
           S        + + S   + +             L   E  I   L ++  +  +   IF 
Sbjct: 122 SVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229


>gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 88/233 (37%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGE 58
            V+++D   +         ++G  +E            +       D+  ++  L     
Sbjct: 4   IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLML--PNV 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109
             LE+ R +R     P++ ++   +    +   + G DD + KP   RE           
Sbjct: 62  DGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRR 121

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +     R +    R + G + +    R+   +G+   L  +E  +L  L AN G+  +
Sbjct: 122 VEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +  +   ++G  D    +  V++HI +LRKKL       + + +   +GY  +
Sbjct: 182 RDYLLHRVWGE-DYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233


>gi|302386981|ref|YP_003822803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197609|gb|ADL05180.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 237

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 11/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       + G S+    +         S   D+  I   ++  G   +
Sbjct: 7   ILVVDDDADIREVLRIQLENKGYSVWEAVNGNDAVAAV-SENPDIDLIILDIMMPGLSGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           +    IR  +  P++ ++           +++G DD + KP    E             V
Sbjct: 66  DACTQIRKITSAPVLFLTAKSKESDKTAAYENGGDDYLVKPFSQAELLMKVRSLLRRYVV 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      I + +  R    + +   L   E ++L YL+ NRGK      
Sbjct: 126 YKGKTEPVFNLSEIRIQDILIDTTYRFVYRENQKIELTDTEFQVLMYLVRNRGKAKDAQA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++         N V  HI KLRKKL  +      + +    GY ID 
Sbjct: 186 IYEGVWNDRFLPSSTNTVMVHILKLRKKLELDFNNPAIIRTVWGKGYQIDE 236


>gi|257439717|ref|ZP_05615472.1| phosphate regulon transcriptional regulatory protein Phob
           [Faecalibacterium prausnitzii A2-165]
 gi|257197857|gb|EEU96141.1| phosphate regulon transcriptional regulatory protein Phob
           [Faecalibacterium prausnitzii A2-165]
          Length = 257

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 31  ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 88

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 89  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 148

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 149 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 208

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 209 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 250


>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
 gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIML--PDVSGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIREKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
 gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G  +   +S E    L    + DV+ ++  L   G    E
Sbjct: 6   LLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIML--PGIDGFE 63

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +I+      + +I ++        ++  + G DD + KP + RE++ R+ ++ RR   
Sbjct: 64  VCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSPQ 123

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N ++             R     G+   L   E  I++ LM N GK + + ++    +
Sbjct: 124 KQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKAW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G  D   +  +V+ ++ +LR K+         + +   +GY  +
Sbjct: 184 GE-DFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 226


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    +      D+  ++  L       L
Sbjct: 3   ILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWML--PKMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +++     P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDRDADKKLIHTVRGVGYIL 220


>gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 236

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G       + E    +      D+  ++          ++
Sbjct: 8   LIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVM--MPKLNGID 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILAR 111
               IR   ++P+I +S        +   + G DD + KP +            R     
Sbjct: 66  TCLKIREEREMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K   N  E   + +  +  +  +   +  L   E  IL  L  NRGK  +  
Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            I+ +++   +    +N V  HI K+R+K+ +       + +   +GY I+ 
Sbjct: 186 NIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236


>gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDLTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 225


>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       + +           D++ +   ++      +
Sbjct: 3   ILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKL-HTTPDIALMILDIMMPEMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P++ +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVVKEVRKDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQD 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + + +   + +             L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 182 RVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G ++E          L          ++  L   G    
Sbjct: 3   ILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVML--PGLSGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P++ ++         D  D G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +                     +G     L  +E  +LE L    G+ V+KT+I   ++ 
Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+VE +I  LR+K+    G   + + R  GY +
Sbjct: 181 TA-YEGGANLVEVYIRTLRRKIDVPYGRQAIRTIRGAGYLL 220


>gi|295108034|emb|CBL21987.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 257

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 31  ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 88

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   +    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 89  ELCKLIKPQYPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 148

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 149 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 208

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 209 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 250


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         ++  D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVML--PNISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R +R  ++ +P+I ++   S+   +   D G  D + KP         I A +   +
Sbjct: 63  EVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISH 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +      + +    R+ +    V  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 AIKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKIDCNVDVPLIHTVRGVGYVL 225


>gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G  +    + +      +    D+  ++  L        
Sbjct: 8   ILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLML--PDISGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ + IR  S VP+I ++   S    +   D G DD V KP   ++       +L R   
Sbjct: 66  EICKRIRKISLVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRRTVK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S    + G + + +   +    G +  L   E RIL  +     K   + ++ 
Sbjct: 126 ESSEDNKSKIIFDNGNLVIDTFVHEIRKAGSIINLTPNEYRILITMAGYPKKTFTREELI 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           S   G  D    +  V++HI  LR+K+ +       + +   +GY  
Sbjct: 186 SMALG-DDFEGFDRTVDTHIKNLRQKIEDDPKAPKYLVTVHGVGYRF 231


>gi|158319439|ref|YP_001511946.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139638|gb|ABW17950.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++        ++   +E  ++ E       +   D+  ++  L    E   
Sbjct: 6   ILIIDDEESIRKLVRRSLINENYLIEEASNGEEALERLRNNTFDLIILDVVLG--DEDGF 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-------VA 113
           EL + I+      P+I +S        +     G  + + KP     + A          
Sbjct: 64  ELIQEIKVLGIKTPIIFVSGRCEDHDQILGLGLGATNYITKPFSPAILCAHVKAQLRTSR 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+N    GP +            E   L  +E  ++++ M N G+   K Q+
Sbjct: 124 EYVAEKTRSSNYIMEGPFKFDLKTYKLYKNNEFIELSSKENLLIKFFMENPGQVFTKEQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +  I+   +  +++N +  +I +LRKKL +       + +   +GY  
Sbjct: 184 YENIWN--NSIIDDNAIMVYIHQLRKKLEDNVKSPKHIVTVWGIGYKF 229


>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|291447797|ref|ZP_06587187.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350744|gb|EFE77648.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 222

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         S    D+  ++  L   G    
Sbjct: 5   LLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIML--PGMNGY 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 63  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+R+ +  R      +   L  +E  +LE L    G+ V+K +I   ++
Sbjct: 123 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL        + + R  GY ++
Sbjct: 183 D-FAYDGDPNIVEVYISTLRRKLGAAT----IRTVRGAGYRLE 220


>gi|182436923|ref|YP_001824642.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465439|dbj|BAG19959.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59
           +LI+D A V+DG   +    G  +E   + E    L +     R +++ ++  L   G  
Sbjct: 5   LLIEDDASVRDGMELVLRRHGYGVETAATGEQALALLAGERGARVELAVLDLML--PGMD 62

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E+ R IRA   ++P+I ++     +  +   ++G DD V KP+    + AR+ A  RR
Sbjct: 63  GFEVCRRIRARAPKLPVIMLTARGDDRDIVAGLEAGADDYVVKPVTAPVLEARIRAALRR 122

Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            +    +            +   + +   G      G    LP  E R+L  L A+ G+ 
Sbjct: 123 AEPYPRQGPAGQAPDADRTDHAGLVIDRAGLTVTKHGAAIALPPTELRVLLELSASPGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + + Q+ ++++       +  +V++ + +LR K+ +       V + R  GY  
Sbjct: 183 LTREQLLASVWD-HSFLGDSRLVDAAVGRLRAKIEDLPARPRYVQTVRGFGYRF 235


>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
 gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +         G         +    L    R D+  ++  L   G   +
Sbjct: 6   ILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R ++       +P+I ++        +   +SG DD + KP   RE+    +     
Sbjct: 64  ELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  E G + +         Q     L   E R+L++ M+++ +  +++Q+   
Sbjct: 124 STPAGVDSALEVGGLTLDPLSHRVSSQFGQLELGPTEYRMLQFFMSHQDRVYSRSQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  V+ HI +LRK L        + + R  GY  
Sbjct: 184 VWGA-NVYLDERTVDVHIRRLRKALGTHHDH-LIQTVRGAGYRF 225


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L        
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+ R ++      ++ ++   S+   +   D G DD + KP              R   I
Sbjct: 63  EVTRRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     +    +++    R      E  PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
 gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   V+         +G  + G           ++   D   ++          L
Sbjct: 7   ILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVM--MPALDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +RA   + P++ ++   S+   +D  ++G DD + KP    E++ARV A      
Sbjct: 65  AVCRRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +    R     G      R E  +LE L+ + G+ +A+  I   ++
Sbjct: 125 PPAPDEDLAFADLTLDPVTRTGRRGGRPVEFSRTEAALLELLLRHPGQVLAREVILERVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G  D   + N +  ++  LR+KL        V +   LGY +D 
Sbjct: 185 GQ-DFGPDSNSLAVYVGYLRRKLEAGGEPRLVHTVHGLGYRLDV 227


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D     V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G +D V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHDIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +   +       +  + + D+  ++          +
Sbjct: 3   ILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIM--MPNVDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + + +RA S +P+I I+   +    +     G DD + KPI        + + +   Y+
Sbjct: 61  SVIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYK 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +    TG +++F++  +         L  +E +IL+ L++N GK   K QI+  +
Sbjct: 121 YAEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +       + N +  H+S +R+K+ +       + + R +GY I+
Sbjct: 181 W-EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224


>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYIITVVRTGYKFEGN 228


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGL--PDFDGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV    R  + 
Sbjct: 63  EVARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +           R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 123 GEVISIGALEIH-PQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
 gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    +      + +  +     ++          +
Sbjct: 6   ILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  QAIMHIRETSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               AETG +       +  + +   ++GE   +   E RILE  + N  +  +  +I+ 
Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++        EN V  HI ++R+K+  +      +     +GY I+ N
Sbjct: 184 RVWNETSFQ-SENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231


>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 227

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                      ++  G   +            +    + +L + + N  + + K Q+F  
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKDLLTFFVTNPNQVLNKEQLFER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 IWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 227


>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
 gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
           PhoB, OmpR-family [Ralstonia eutropha H16]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGANF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
            +  R      Q+P+I ++     Q  +   ++G DD V KP   +E+      + R  A
Sbjct: 65  AKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V                   +       L   E R+L +LM +  +  +++Q+ 
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDDSGAIKLELGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|228959449|ref|ZP_04121138.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800225|gb|EEM47153.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHRTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +   ++   S      L      D+  ++          L
Sbjct: 5   ILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIM--MPKMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I ++        +     G DD ++KP    E++ARV A  RR  +
Sbjct: 63  ETLIHIRKDFNMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRRYTI 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN               D     V G+   L   E +ILE    N+    +  QI+  I
Sbjct: 123 FNNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIYENI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     AV +  +  HI+KLR+K+  +    + + +   +GY I
Sbjct: 183 W-RDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGYKI 225


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E            ++   D+  ++  L   G    +
Sbjct: 2   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVML--PGMNGFQ 59

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111
           +   +R +    P+I ++   + +  +     G DD + KP                ++ 
Sbjct: 60  ILEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 119

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +      N    G + ++ +  +  + G+   L  +E  +L YL    G  + + 
Sbjct: 120 HVEEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + + ++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 180 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESVHIDSIRGVGYKLVVN 230


>gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           ATCC 27126]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++    +    G ++      +  +        D+  ++  L   G   ++
Sbjct: 6   LVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWML--PGGSGVQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L + ++ H     +P+I ++     +  +   D+G DD V KP   +E+    +      
Sbjct: 64  LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRV 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S    E   +++           E   +   E ++L + M +  +  ++  +   +
Sbjct: 124 TPTSSEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225


>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G S+    + +           D+  ++  +    G + 
Sbjct: 8   ILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R +       ++ ++      + +  F+ G DD + KPI  R +++R+ AI RR  
Sbjct: 68  CRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRRNS 127

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 E         +  +        E   L ++E  +L  L +  GK   +  I  +
Sbjct: 128 KGEETLENKVEIADLVIDRETFLVYKNDEKIVLAKKEFELLYLLASKPGKVYTRETILKS 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+      V    ++ HI KLR+K+ +    D V + + +GY  D
Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKIGD----DYVSTVKGVGYKFD 227


>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +    NS +       S   D+  ++  L        
Sbjct: 4   ILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGL--PDRDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           ++ + +R   +  P+I ++    L   +   ++G DD V KP         + AR+    
Sbjct: 62  QILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQP 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +    T  I +    R+ +V      L  +E  +LE  + +  + +++ Q+   
Sbjct: 122 SKNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GSDRIETVRGMGYRL 220


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++ + D+  ++  L        
Sbjct: 12  LLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVML--PDMDGF 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K
Sbjct: 70  TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++      +       +  +    G++  L   E ++L YLM N G+ V+K+QI   +
Sbjct: 130 HGSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI-DWN 223
           +  +D   +  +VES+IS LR+KL             + ++R +GY + D N
Sbjct: 190 W-EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDPN 240


>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    L      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEKS--KHITTVVRTGYKFEGN 228


>gi|229075211|ref|ZP_04208205.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|228707988|gb|EEL60167.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  +D   +++  +     +G  ++G            S   DV  ++      G   L
Sbjct: 3   ILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIM--MPGIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     +              + G    L  RE  +LE L+ ++G  +++TQ+ + ++ 
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N+V+ +I  LRKK+ +      + + R  GY++
Sbjct: 181 -FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220


>gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G  +      +    + S    D+      ++       
Sbjct: 6   ILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMVSD---DIDLYILDIMMPIINGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +    IR  S  P++ ++           F SG DD ++KP  +                
Sbjct: 63  QACVEIRKKSNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRRYYV 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 + + +++      I +  +     + GE   L   E +IL  L++NR +  +  
Sbjct: 123 YQGKMEKEENNDDNIVYNNITINPNSEAVYLNGEQIELTYLEYQILYLLLSNRKRIFSTQ 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            ++ +I+         N +  HI  LRKK+  +      + +    GY 
Sbjct: 183 TLYESIWNEPYYYSANNTIMVHIRNLRKKIESDPQNPKIIKTIWGKGYR 231


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  ++G  +                +     ++           E
Sbjct: 9   LIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVM--MPKLDGYE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              I+R  S +P++ ++        +D   +G DD + KP    E+LAR+ AI RR    
Sbjct: 67  TLDILRKQSGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAY 126

Query: 123 NNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVAK 170
            N  +             ++                  L ++E  +LE  + +  +  ++
Sbjct: 127 PNIGQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+  AI+G+   +     V++H+  LR KLR+      + +   +GY ++
Sbjct: 187 EQLLEAIWGMDYLSASSRTVDTHVKTLRLKLRDASAH--IQTVWGIGYKLE 235


>gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +  +           D   +   ++      L
Sbjct: 3   ILMIEDNQSVCTMTEMFFQREGFQAEFVHDGQDGLNRFKQED-DWDLLILDIMLPSMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++   +    +  FD G DD V KP     ++AR+ A+ RR   
Sbjct: 62  TICQKVRQISDVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARIKAVKRRFTQ 121

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  + E   +                    +  L  +E  +L + + +  +  ++ Q+  
Sbjct: 122 TTIQKEDERLATAHFLLDKKTREVFLDGEPIENLTPKEYDLLCFFIQHPRQVFSREQLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            I+G +    +E  V+ HI +LR+K+ +      + +   +GY  D +
Sbjct: 182 QIWG-YQFYGDERTVDVHIKRLRQKIGDGPKP-FLYTVWGVGYKFDED 227


>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
 gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
 gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
 gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
 gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
 gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
 gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 235

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +++G + +   +G       +      L    + D   ++           
Sbjct: 3   ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIM--MPELDGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR H    P+I +S        +   + G DD ++KP    E+ AR+  I RR  
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + VF +            L  RE  IL YL  ++G+ V +  +F
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            A++G +D   +   ++ HISKLRK +  + +    + +    GY 
Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G       +         +   D+  ++  L       L
Sbjct: 11  ILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLML--PELDGL 68

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           E+ + I   +  + +P++ ++       T+   + G DD V KP   +     + A +  
Sbjct: 69  EVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRR 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + R       +   GP+ V     +  + G+   L  +E  +LE+L+ N G+ + +  + 
Sbjct: 129 LERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDVLL 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           SA++G +D       V+ H+ +L++KL   L  D + S + LGY +
Sbjct: 189 SAVWG-YDYYGTTRTVDVHVRRLKQKL--PLLDDAIISIKSLGYKL 231


>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +   +       L      DV  ++  L   G   +E
Sbjct: 19  LVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGL--PGVDGIE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++ARV A+ RR + +
Sbjct: 77  VCRQLRVFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRRA 136

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G +R+  DGR+  V      L R E  +L  L +  G  +++ 
Sbjct: 137 PESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSRK 196

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           Q+   ++G       +N+V+ H+  LR+KL +       V + R +GY +
Sbjct: 197 QLLDTVWGDT-WVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGYRM 245


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +G  +E  N       +      ++  ++  L   G    E
Sbjct: 6   LVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIML--PGLDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +  R  +  P++ +S    +++ +   + G DD + KP    E+LARV A+ RR   +
Sbjct: 64  ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRITA 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N   +   +++  + R+    G +  L  RE  +L + M +  + + + QI   ++GL D
Sbjct: 124 NKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL-D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                NV+E +I+ LR+K+ +      + + R +GY +
Sbjct: 183 FTGGSNVLEVYINMLRQKIEDYGS-RIIHTVRGVGYVL 219


>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  +      E           D+  ++  L   G    
Sbjct: 4   ILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  AICKQIREKKNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  N+  E   IR+    R   V  E      +E  +L +L  N      K ++F
Sbjct: 122 LVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 QKIWNM-DSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRF 227


>gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       + G  ++          + + +  DV  ++  L   G   L
Sbjct: 3   ILLVEDDPQMADYLRKALIEAGAVVDRAADGREGLLMAAGSDYDVLILDRML--PGLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +RA     P++ +S    +   ++   +G DD + KP    E+ ARV A      
Sbjct: 61  AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +    R+    G+   L  RE R+LE LM + G+ V +T +   ++
Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRGKIDKDFDPPLLQTVRGAGYRL 221


>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 232

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           L    + D   ++  L       +
Sbjct: 4   ILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLML--PEVDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R +S ++P+I ++        +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 62  SVLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYH 121

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +                +    +  +  G+   L  RE  +L Y     G+ + +  I
Sbjct: 122 EQSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            ++++G +D   +  +V+ HIS LR+K+        +  + R  GY
Sbjct: 182 LTSVWG-YDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGY 226


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +      S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +       + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231


>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   +  G     G +G S+   +  E    L  + R D+  ++  L   G   L
Sbjct: 5   IVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG--GL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAA 114
           E+ R IR    ++P++ +S        +     G DD + KP          + L R   
Sbjct: 63  EVVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    + G I +  + R   V G    L  RE  +L + + +  +  ++ Q+ 
Sbjct: 123 SRGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G          V++ I++LR  + +       +++ R +GY  +
Sbjct: 183 ENVWGSR-YFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGYRFN 229


>gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
 gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus
           licheniformis ATCC 14580]
 gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +          S   D+  I+  L       +
Sbjct: 3   ILMIEDNLSVCTMTEMFFAKEGFETEFVHDGLEGYNRFKSGDWDLLIIDIML--PSMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR + 
Sbjct: 61  TICKKVREESTVPIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARIKAVSRRYQN 120

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +                           ++  L  +E  +L YL+ +  +  ++ Q+
Sbjct: 121 AGRQDSADSDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSPKQVFSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++G +    +E  V+ HI +LRKKL +      + +   +GY  D +
Sbjct: 181 LEQVWG-YQFYGDERTVDVHIKRLRKKLGSDSRP-FLYTVWGVGYKFDED 228


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G ++    +      +       +  ++          + 
Sbjct: 7   LVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIM--MPKMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR     P+I +S        +    +G DD ++KP +  E++ARV +  RR    
Sbjct: 65  TCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKL 124

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N+  E+         I + +D  + ++      L +RE  IL  L  N+G   +  +I+ 
Sbjct: 125 NSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +++         N V  HI K+R+K+       + + +   +GY I+ N
Sbjct: 185 SVWHEEFYDCH-NTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232


>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 243

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 11  IVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 69  SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE   L   E  +L+ L+ +  + +++ 
Sbjct: 129 PLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVF 237


>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
 gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAVDPIRTVRGAGYSF 227


>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  N+      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENENDTLAIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E            S    D+  ++  L   G    +
Sbjct: 6   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVML--PGMNGFQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111
           +   +R++    P+I ++   + +  +     G DD + KP                ++ 
Sbjct: 64  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A   +      N    G + ++ +  +  + G+   L  +E  +L YL    G  + + 
Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + + ++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 184 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESVHIDSIRGVGYKLVVN 234


>gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli CNPAF512]
          Length = 234

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     S             D+  ++          L
Sbjct: 5   ILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIG--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I +   GR          +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAAPGRRHAALVAGEISLDRHGRTVMFGDSALAMTALEFAILEALLSRPGMVFSREQLMQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + YG     V +  ++SHI  +R K     G   + +   +G+ +
Sbjct: 183 SAYGAGTY-VADRTIDSHIRNIRAKFTAVGGTGIIATVHGIGFKL 226


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++             +    + E    L    +  ++ I   ++       
Sbjct: 6   ILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEK-SIALIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
              + IR HS+VP+I ++        L  FD G D+ ++KP   + ++ARV A + R   
Sbjct: 65  TALKTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSGV 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G I +        V G+   L  +E  +L+Y + N+G  +++ +I + ++  
Sbjct: 125 QKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRAKLMDKG--EYIKTVWGMGYKFEV 223


>gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627]
 gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627]
          Length = 223

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   + P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKKTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  ++         L R+E ++L  L +  G+ + +T I S ++G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS+
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFNEKLIATIRGMGYSL 218


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yclJ
 gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis]
 gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +         +    D+  ++  L       +
Sbjct: 3   ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR K 
Sbjct: 61  TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +                      V  L  +E  +L YL+ N  +  ++ Q+ 
Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227


>gi|22538097|ref|NP_688948.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           2603V/R]
 gi|25011986|ref|NP_736381.1| hypothetical protein gbs1948 [Streptococcus agalactiae NEM316]
 gi|76788392|ref|YP_330516.1| phosphate regulon transcriptinal regulatory protein PhoB
           [Streptococcus agalactiae A909]
 gi|76797930|ref|ZP_00780191.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Streptococcus agalactiae 18RS21]
 gi|77405067|ref|ZP_00782167.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           H36B]
 gi|77412880|ref|ZP_00789084.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           515]
 gi|22535003|gb|AAN00821.1|AE014280_13 phosphate regulon response regulator PhoB [Streptococcus agalactiae
           2603V/R]
 gi|24413529|emb|CAD47607.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563449|gb|ABA46033.1| phosphate regulon transcriptinal regulatory protein PhoB, putative
           [Streptococcus agalactiae A909]
 gi|76586704|gb|EAO63201.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Streptococcus agalactiae 18RS21]
 gi|77161020|gb|EAO72127.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           515]
 gi|77176361|gb|EAO79130.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           H36B]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D A +++  +      G   +GF+S E           D+  ++  L G  G  
Sbjct: 1   MIYCVEDDADIREMMLYTLQMAGFKAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +LE  R       +P+I  +   S    +   D G DD + KP    E+++R+ A     
Sbjct: 61  ILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R   S      G + +       +   E   L  +E  +L     N  +   + ++   +
Sbjct: 121 RQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G      E   V+ HI  LR KL        + + R +GY ++ 
Sbjct: 181 WGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEE 222


>gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F   E           D++ ++          L
Sbjct: 5   ILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIM--MPKISGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  ELCKKIRERYNYPIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 122

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E   + +     +  +   +  L   E  IL  L   +G  V+  ++F
Sbjct: 123 YNTGTVKAEEILEHKGLVLNKKTHECFLNERLLSLTPTEFSILVILCEQKGNVVSAEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             I+     +   N +  HI  LR+K+ +       + +    GY I+ 
Sbjct: 183 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 231


>gi|289550049|ref|YP_003470953.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315659323|ref|ZP_07912187.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
 gi|289179581|gb|ADC86826.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315495748|gb|EFU84079.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D   +   ++G       S             D++ ++  +   G    E
Sbjct: 5   LIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLEQQTVDIAIVDIMMA--GMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + I+    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR +++
Sbjct: 63  LCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRRYQIN 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                       +D             LP++E ++L  L ++  +   +  +   ++G F
Sbjct: 123 AEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLLYMLTSHPKQVFLRDTLIEKVWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI +LR++L        + + R  GY ++
Sbjct: 182 DYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVE 221


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIM--MPNLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  ++     E       +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I I+        +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  EICRRVRQVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQPH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   IR+  D     V G+     + E  +L  L  NR   + + QI + ++G +
Sbjct: 122 KD-IIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218


>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 239

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++      G +G  +    +        ++   D+  ++      GE  L
Sbjct: 7   LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR+  
Sbjct: 65  SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
              R        ++         E           PL   E  ++        + +++ Q
Sbjct: 125 GGQRVTAPDGATYAFAGWLLKTQERTLVDGEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ IS+LRKK+  +      + +    GY++
Sbjct: 185 LLDITQGREANAFD-RAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 232


>gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 241

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    S    + +       +  ++      GE  L
Sbjct: 14  ILVVDDDFDLRELISGFLSQNGFEVHTAASGREMDKVLQRGDIGLVVLDYM--MPGEDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +      P+I +S        +   + G DD + KP H RE+LAR+ A+ RR   
Sbjct: 72  SICKRLNQKGGPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRRGDG 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
                ++     F    D   +    P      L   E  +L   +   G+ + + QI  
Sbjct: 132 RGQGEKSPLTTFFGWTLDNIKRTLQRPDGVQVALSNAEFELLRVFLERPGRALTRDQILD 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            ++G  +    +  ++  IS+LR+KL      G + + + R +GY  
Sbjct: 192 HLHG-PNSDNFDRAIDVQISRLRRKLNDEANDGEEIIRTIRGIGYMF 237


>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E           ++  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIML--PKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+  +      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLML--PEMSGSE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V 
Sbjct: 63  VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRKSVE 122

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 TVESGAATLAAGPVRMDIERHVVTVDGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKVEPEPSTPRHIVTVRGLGYKFE 226


>gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum]
          Length = 232

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           ++ + IR     P+I ++             S  DD + KP +                R
Sbjct: 63  QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSIADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               + + +   +  +   + +  +     + G+   L   E  IL YL  N+GK V+  
Sbjct: 122 YRQPHFKQEDERSEYDIRGMTISKNSHKCILFGKELQLTPTEFSILWYLCENQGKVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+ 
Sbjct: 182 ELFEAVWGEKYMD-NNNTVMAHIGRLREKMKERAKNPKFIKTVWGVGYTIEK 232


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +      +           D+  +   ++      +
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR ++
Sbjct: 62  EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQM 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + E         +          ++G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +G  +   +  +    +      D+  ++           
Sbjct: 6   ILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIM--MPNIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR K 
Sbjct: 64  EVARQIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKK 123

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N         +         + R   + GE   L  +E  IL  L ++  K  +   IF
Sbjct: 124 LNQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEILYLLASHPKKVYSVENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++G        N V  H+  LRKKL++       + +   +GY+ +
Sbjct: 184 HQVWGEAYFEGG-NTVMVHVRTLRKKLKDDQRKSKWIKTVWGVGYAFN 230


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIML--PQLDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + + IRA     P++ +S        +   + G DD + KP   RE        +     
Sbjct: 64  VCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRRTEK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +S+ +     +RVF D  +     ++  L  +E  +L YL+ +    + + ++
Sbjct: 124 DQTDDNDLSDEQWVVNGLRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTRERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 LERIWG-YDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKF 230


>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 274

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++             + F   E    +      D+  ++  L G  G ++
Sbjct: 50  IYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGESGIEI 109

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           L+  R     + +P+I ++   S    +     G DD V KP         +  V     
Sbjct: 110 LKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVLRRSH 169

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R++  +     GP+ +          GE   L  +E  +L YLM N G  + + QI  ++
Sbjct: 170 RVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQREQIMESV 229

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F  A E   ++ HI  LR+KL    G   + + R +GY +D 
Sbjct: 230 WG-FTYAGESRTIDMHIKSLRQKLGE--GGQIIKTIRGVGYRLDE 271


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +    +      L +     +  ++          L
Sbjct: 6   ILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVM--MPEMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +RA   +P++ +S        +    +G DD + KP +  E++ARV         
Sbjct: 64  EVVRAVRAEYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSIY 123

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +     +  +   +++        V+     L   E  IL  L ++ G+  +   
Sbjct: 124 LNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAEA 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           IF A++         N V  HISKLR KL     G   + +   +GY I+
Sbjct: 184 IFEAVW-KDRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIE 232


>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 233

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++   +  + S           + D++ ++  L        E
Sbjct: 7   LVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVML--PDIDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    ++    G DD + KP    E++ARV A  RR    
Sbjct: 65  ILKEIRKDHNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFIRY 124

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N+ +                 +        E   L   E  IL  L  N+GK ++   +F
Sbjct: 125 NDGSGQSSEDTLEIAGLVLNRNTHQCLYGEEEVTLTPLEFSILWILTKNKGKVISSENLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+KL       + + +   +GY ++ 
Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D+   +           L      D   ++  L   G   L
Sbjct: 27  ILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLML--PGVDGL 84

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 85  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 144

Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+    G+   L  RE  +L Y   + GK  ++  +
Sbjct: 145 ALAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDL 204

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +    + + +    GY +
Sbjct: 205 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 251


>gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK--------PIHHREILARVA 113
           EL R IR    +P+I +S   S    +  F +G DD + K             ++     
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 71  EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + N      I V  D     V     PL  +E  IL+ L+ N+ K + +  I   ++G
Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++   E  ++++HI  +RKKL        + + + +GY ID 
Sbjct: 191 -YEYHGETRMIDTHIKNIRKKLD----ISYIKTVKGIGYKIDE 228


>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + S             D++ ++  L   G    
Sbjct: 5   ILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIML--PGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SICQKIRERYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRRYKK 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  +E    +                +  + GE+  L   E  IL+ L+   G  V+  
Sbjct: 123 YSPVSEVETQKTTRLSYKKLELDMKTYECLLDGELVALTPTEFSILQLLLKQAGNVVSLE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++F +++         + +  HI  LR+KLR+       + +   +GY I
Sbjct: 183 ELFRSVWKDEYYNKNSSTITVHIRHLREKLRDTGANPTYIKTIWGVGYKI 232


>gi|254525273|ref|ZP_05137328.1| Two component Transcriptional regulator, Winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219722864|gb|EED41389.1| Two component Transcriptional regulator, Winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 245

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G +++     +           ++  ++  L   G   ++
Sbjct: 18  LLVEDDRRLAELVSDYLREHGFAVQHLARGDLAGAACRQHAPELVVLDLML--PGLGGID 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+ S VP++ ++        +   +SG DD V+KP+  R +LAR+ A+ RR   S
Sbjct: 76  VCRQIRSFSDVPILMLTACEDDIEQVLGLESGADDFVHKPVEPRLLLARLRALLRRRHGS 135

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +       +           R+  + G    L   E  IL  L +  G+ +++ QI  A+
Sbjct: 136 STSGTPCRLMHGELLIDRMQREVHLHGLPVELGTTEFEILWLLASQPGQILSRDQILQAV 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G+      +  V+  I KLR+KL +       + +    GY  +
Sbjct: 196 RGIG-FDGLDRSVDVSIGKLRRKLGDDAREPRRIKTVWGRGYQFN 239


>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
           with phor [Cupriavidus taiwanensis LMG 19424]
 gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGANF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
            +  R      Q+P+I ++     Q  +   ++G DD V KP   +E+      + R  A
Sbjct: 65  AKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V                   E       L   E R+L +LM +  +  +++Q+ 
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDESGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 227

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S       E    +      DV  ++  L   G    E
Sbjct: 4   LIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIML--PGLDGRE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +R     +P++ ++    ++T +   D+G DD + KP    E+LAR+ A + R  +
Sbjct: 62  VLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRADQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G +++    R     G    L  RE  +LEYLM +  + +++ QI SA++  
Sbjct: 122 PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      NVV+ ++  LR+KL        + + R  GY  D
Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 5   ILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLML--PKVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +++                    +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYL 230


>gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
 gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +     +G  ++  ++                 ++  L        
Sbjct: 5   ILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPM--LNGK 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARV 112
            +   +R     P+I +S     Q+ ++ F+ G DD V KP   RE++          + 
Sbjct: 63  SILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  Y     + +      + +  +     V+     L  +E  +L +L  +  K   + +
Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDSEVLLTPKEFDLLLFLAKSPDKAFKRNE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
           I  A++  +D   +   V++HI ++RKK           + +   +GY  D
Sbjct: 183 ILRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPKVAQMIVTVWGIGYKFD 232


>gi|319652280|ref|ZP_08006398.1| response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396103|gb|EFV76823.1| response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 223

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +   N+ +    L      D++ ++      G    
Sbjct: 3   ILVVDDDVNIQKLVTIHLNREGYQVLRANNAQEALALLEEQTADLAVVDVM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120
           EL R++     +P+I ++    L      F SG +D + KP   RE +      + R  +
Sbjct: 61  ELTRLLTNDFGIPVILLTAKGQLGDKEQGFLSGSEDYIVKPFEVRELLFRVAVVLRRAER 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +     + E+  E    P +E  +L  L A + K   +  +    +G 
Sbjct: 121 AMETVIKAGNLLMDRKSFEVEINQETILFPLKEFELLSLLSARKSKITQRAALIEQAWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    E  + +HI+++R +L+       + + R +GY ++ 
Sbjct: 180 SDYEGSEQTLNTHINRIRDRLKKYGATVEIQTVRGIGYKLEE 221


>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++   S +       +   D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIML--PKVSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ + IRA   +P+I +S        +     G DD + KP        R          
Sbjct: 62  EVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K          + + +  R   V  +      +E  +L++++++  + ++K  +F  
Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+G FD + + + V  HI KLR+KL         +++    GY  +
Sbjct: 182 IWG-FDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRFN 226


>gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G ++           +      D++ ++          +
Sbjct: 8   ILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVM--MPRMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E++ARV +  RR   
Sbjct: 66  TMTAKLREKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYHR 125

Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +R  +                  +  +  V  +   +   E +IL  L+ N G+    
Sbjct: 126 FLDRLNSKQTENPKVHRLGGLEVNEETVEVTVDDKTVKVTPIEFKILLLLIQNPGRVFPA 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +I+  ++   + AV  + V  HI  LR+K+  N      V     +GY I+ 
Sbjct: 186 EEIYERVWN--ERAVNTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEK 236


>gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +      L   +G ++   ++           + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNKFDLALIDISL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    VP+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKEKQDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGS 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + V +     + +G    L   E R+L   + N    + ++++   ++   
Sbjct: 122 SPSSFEICGLHVDTASGIVKKEGREIFLSALEYRLLLVFINNNKSIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ N     + + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPEIILTVRGTGYRL 221


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G + +                 D+  ++           
Sbjct: 4   LLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIM--MPETDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR  SQVP+I ++        +     G DD ++KP   +E+LAR+ A+  R  +
Sbjct: 62  EVCRQIRKMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSNQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   E   ++          Q +   +  +E  +L   + +  +  ++ Q+ ++I+G 
Sbjct: 122 NQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTSIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
           ++   E+  ++SHI  +R KLRN        + +   +GY   W
Sbjct: 181 YEVETEDRTIDSHIRNVRDKLRNAGFPVDSHLQTVWGVGYKWVW 224


>gi|261366404|ref|ZP_05979287.1| phosphate regulon transcriptional regulatory protein Phob
           [Subdoligranulum variabile DSM 15176]
 gi|282571664|gb|EFB77199.1| phosphate regulon transcriptional regulatory protein Phob
           [Subdoligranulum variabile DSM 15176]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLTYNLTADGYGVTSALNARTAADAIRQREFDLVLLDVNL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+I   H    +I ++        +  ++ G  D + KP   R +  ++ A++  L+
Sbjct: 62  ELCRLIKPQHPDTIIIFLTANDQESDQIRGYEVGAVDYITKPFVLRALQRKIKAMFAMLE 121

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQAASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + ++ V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDEKYVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 234

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           GV++   +            R DV  ++  L   G+  LE
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLML--PGKDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR    
Sbjct: 68  VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 127

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         V    R   + G    L   E  +L  L    G+ +A+ Q+     
Sbjct: 128 AGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAG 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  +EA +   V+ H+S+LR+KL +       + + R  GY +
Sbjct: 188 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G+        +       + R D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLML--PGTDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R IRA S VP++ ++        +   ++G DD V KP   +E++ARV A      + 
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGER 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   G      G   PL   E  +L  L     +   +  +   ++G +
Sbjct: 124 PPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGYR 221


>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
 gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 243

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 11  IVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 69  SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE   L   E  +L+ L+ +  + +++ 
Sbjct: 129 PLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVF 237


>gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 279

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 55  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 112

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 113 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 275


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   + +       +   D++ +   ++      +
Sbjct: 3   ILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKL-NMNPDIALMILDVMMPQMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAEH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    E   I +       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 NVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|302188560|ref|ZP_07265233.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 227

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRNGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE +        R   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       + V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 127 SSEPHTPKGLLVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|283785895|ref|YP_003365760.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282949349|emb|CBG88960.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 240

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLIDHGDRVLPWVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +         P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQMDAESPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233


>gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3]
 gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3]
          Length = 247

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 21  ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIM--MPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 79  ELCRRIREKHSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 139 FNQNAVQVIEKKINIRGLEIDEVSRTVVLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D+G  +      E       + R D   ++  L   G   L
Sbjct: 5   ILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLML--PGIDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  RA     P+I  S   S    +   + G DD + KP    E++AR+ A+ RR  
Sbjct: 63  EICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTD 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A     R       +    RD  V G+   L  RE  +L +   + GK  ++  +
Sbjct: 123 ALERNARLDAGRLEVSGLSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 183 LNQVWG-YQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKF 229


>gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G   E  ++ +   +L  S + D+  ++  L G G   L
Sbjct: 3   ILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L   IRA +   P++ +S    +   +    +G DD V KP    E    +  +    R
Sbjct: 62  RLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRGR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    +     + +    R     G+   L  RE R+LEYL  + G+ V +T +   +
Sbjct: 122 TEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+    G   + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFGMPLIHTIRNAGYML 223


>gi|295091309|emb|CBK77416.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 247

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V+   + +    G   +  +          S    +  ++  + G      
Sbjct: 20  ILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGND-DGF 78

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
              + +R      P++ +S       TL   D G DD V+KP +      +I A V    
Sbjct: 79  HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +      GP    +   +    G    L  RE  ++   +++ G+  +K Q++  
Sbjct: 139 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   + AV++NV+  +IS LR K+ +       + +   +GY+ 
Sbjct: 199 VWN--NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 241


>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDMLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFE 226


>gi|229172679|ref|ZP_04300237.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610811|gb|EEK68075.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 218

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 89/218 (40%), Gaps = 4/218 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++        +G                   + D+  ++           ++  
Sbjct: 2   DDDPHIRELVSVFLEREGFQTYEAIDGLDALKKIDEVKVDMVILDIM--MPNMDGFDVCF 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ ++
Sbjct: 60  ELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQ 119

Query: 126 AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +      +      +     +   LP +E  +L  L +  G+  ++ Q+   ++G +D  
Sbjct: 120 SIQVGNVLLNRKTFEVTAGEQTATLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFE 178

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 179 GNERTLDVHINRLREKFQVEKSKFSIKTIRGLGYRLEV 216


>gi|294339741|emb|CAZ88103.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 245

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G +++     +      +        ++  L   GE  L
Sbjct: 10  ILVVDDDPELRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLML--PGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P++ +S        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 68  ALARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQP 127

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                  GP  + +        G+   L   E  +L+ ++A+  + ++
Sbjct: 128 TSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLS 187

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + Q+   + G ++    +  ++  +++LR+K+ +       V + R  GY  +
Sbjct: 188 RDQLIDWLKG-YERDAFDRSIDVRVARLRRKIEDDPAHPVYVRTIRGQGYLFN 239


>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 3 str. Tulya]
 gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +         D+G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 227


>gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E       S + ++  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
           E  + IR  + +P+I ++   S Q  +  F SG DD + KP    E+             
Sbjct: 63  EAIKRIRRLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  +   + +         +     L  +E  IL  L  N+G+    ++I+  
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228


>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 222

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G   E   +         +   D   ++           
Sbjct: 4   ILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVM--MPVLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + I++  QVP+I +S        L  F+ GVDD V KP   +E++AR+       ++
Sbjct: 62  STCKQIKSIDQVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLERGKK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +++      +++   GR   V GE  PL  +E  +L YL  +    +++  +   ++
Sbjct: 122 TQANSDVMIFKGLQIDVLGRVVTVDGEKAPLTPKEIDLLLYLATHPNVALSRETLLVEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   ++  V++HI  LR  L      D + + R +GY  +
Sbjct: 182 -NYDYFGDDRTVDTHIKMLRHNLGPY--RDFITTVRGMGYKFE 221


>gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 245

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    +      +      D+  +   ++  G   L
Sbjct: 16  ILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQ--DIQLLIIDIMMPGMDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD V+KP    E++ARV +  RR   
Sbjct: 74  SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ++A     +            DG+   V GE   +   E +IL  LM + G+  +  +
Sbjct: 134 LGSKAAGPEDKNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++     A  EN V  HI ++R+K+  +      +     +GY ++ 
Sbjct: 194 IYERVWEEAAYA-TENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243


>gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIML--PGTDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R ++A      +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S   +    I                V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+  +I+G +    E   V+ HI  LRKKL        + + R +GY 
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYIKTVRGVGYK 223


>gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G   E          L   A+ D+  ++  L       L
Sbjct: 5   ILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVAQPDLILLDLML--PVLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R IRA S VP+I ++        L     G DD V KP   RE++ARV       R 
Sbjct: 63  EVARRIRAESDVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVLRRVRG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++      G + V     +    GE   L   E ++L  L    G+   ++++ +A  
Sbjct: 123 AVLTQEVYRAGSLEVDLGAFEARCGGEPINLTPSELKLLALLAKEPGRVRQRSELLTA-S 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +   +E  V++HI  +R+KL      + +++ R +GY +
Sbjct: 182 GDAESYADERTVDAHIKNIRRKLGECG--ERIETVRGVGYKL 221


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +           + D+  ++  L       L
Sbjct: 31  IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIML--PDMDGL 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++    ++  ++  D G DD + KP   +E+LARV A  R  K 
Sbjct: 89  EVCRRVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHKA 148

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        +       ++    +  V+G++  L ++E  +LEY++ N+   + + QI  
Sbjct: 149 NEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQILQ 208

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   + NVV+ +I  LR K+  +     + + R +GY+I
Sbjct: 209 EVWG-YDYVGDTNVVDVYIRYLRAKIDERFDDKYIYTVRGVGYAI 252


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +     +    +G ++      +       + + D+  ++  +        
Sbjct: 6   ILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMI--PKISGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S +  ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 64  DLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
            N                       F       L + E +I++ L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +G FD    +  +++HI  +R+K+ +     D + +   +GY 
Sbjct: 184 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPDYIKTIYGMGYK 227


>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
           [Pseudomonas fluorescens SBW25]
 gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
 gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens SBW25]
 gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
 gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    +      +      D+  +   ++  G   L
Sbjct: 16  ILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQ--DIQLLIIDIMMPGMDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD V+KP    E++ARV +  RR   
Sbjct: 74  SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ++A                  DG+   V GE   +   E +IL  LM + G+  +  +
Sbjct: 134 LGSKAAGPEDNNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++     A  EN V  HI ++R+K+  +      +     +GY ++ 
Sbjct: 194 IYERVWEEAAYA-TENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243


>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
 gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
          Length = 234

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +++            +    + +    +    R D+  ++  L    G ++
Sbjct: 6   ILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +     ++VP+I ++        +   D G DD + KP   RE+++R+ A      
Sbjct: 66  ARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRAS 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   + +               +   E R+LE+ M+++ +  ++TQ+   ++
Sbjct: 126 SVAAEKAIEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  ++ HI +LRK L        + + R  GY  
Sbjct: 186 GA-NVYVEDRTIDVHIRRLRKALAPFGYDRFIQTVRGTGYRF 226


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +    +      L  +AR D+  ++  L        E
Sbjct: 8   LVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVML--PDIDGFE 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +RA     P++ +S   + +  +     G DD V KP    E        +     
Sbjct: 66  ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +  D       GE   L   E  +L Y + N  + +++TQI
Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++  +D   E  +V+ ++S LR+KL  + G   + ++R  GY +
Sbjct: 186 LDAVWS-YDYGGESTIVDQYVSYLRRKLG-RHGPSLIHTQRGFGYVL 230


>gi|318040455|ref|ZP_07972411.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 239

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L DD A ++        ++G ++                  D+  ++  L       +E
Sbjct: 7   LLADDDARLRQFLELELREEGYAVHSCGDGIGALTQIRQEPPDLLVLDWML--PDLSGVE 64

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R+   QVP++ ++   +++  ++  D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 65  VCQRLRSTGVQVPVLMLTGRDAVKDRVEALDAGADDYLVKPFSIEELLARLRALARRGAS 124

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  E   +++     +    G    L   E ++L  LMA  G+   +  + 
Sbjct: 125 ASGPASEQTDLLELEDLQLNLASHEVSRAGTSVHLSATEFQLLRCLMAEPGRVQPRQNLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  +   + NV++ ++  LR+KL        + + R +G+ +
Sbjct: 185 DQVWGT-NFVGDANVLDVYVRYLRRKLEPPGRPTLIQTVRGVGFLL 229


>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +     +G +L   +  E           D+  ++          +
Sbjct: 5   ILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLM--MPKVDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ +S   S          G DD V KP    E+ AR+ +  RR   
Sbjct: 63  EVIRQIRTRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                +               R+  D       G    L  +E  IL+   +N  +   K
Sbjct: 123 YARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            Q++  I+   D   +ENV+  HI +LR+K+  +      + +   +GY  +
Sbjct: 183 AQLYGFIW-KDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGYKWE 233


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +      +           D+  +   ++      +
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR ++
Sbjct: 62  EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQM 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + E         +          ++ +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIERKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D  ++++     F  +   +      +    +      D+  ++  L       
Sbjct: 4   IILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVA 113
             + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    
Sbjct: 62  WSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRK 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + L+  ++      I V    R   V      L   E  IL Y + N+G  + + Q+
Sbjct: 122 VTKQLLENEDDILSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFIKNQGIVLTREQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 182 ISRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   + +      G +G+S+               +  D   ++      G   LE
Sbjct: 6   LLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVM--MPGMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120
           + + IRA +QVP++ ++        +   + G DD               R      +  
Sbjct: 64  VCKRIRAKTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRAQPT 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +R E   + +   GR+ +V G    L   E  +L  L+   G+ + +  +     G 
Sbjct: 124 AVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDALLGEA-GR 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  V+ HIS LR+KL ++ G   + + R +GY  
Sbjct: 183 SDTVVGERTVDVHISHLRQKLGDEGG-RLIKTVRGVGYVF 221


>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +          +G  +    + E   W  +    DV  ++  L   G    E
Sbjct: 4   LVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIML--PGMNGYE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGAP 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T     +    R      E   L  RE  +LE+L+ +    + K  I   ++  
Sbjct: 122 ARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +EN+VE +I  LR+K+    G   +D+ R +GY +
Sbjct: 182 H-YDGDENIVEVYIGYLRRKIDAPFGAHTIDTVRGVGYRL 220


>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++  +    ++G  +      E    L  S   D+  ++  L        
Sbjct: 4   ILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVL--PKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R IR +S +P+I ++       +L  ++ G DD + KP   R ++ +V     +   
Sbjct: 62  SVCRRIRKNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLEKYSG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         I +    R   V G    L   E  +L YLM NRG  + + Q+ + I+G
Sbjct: 122 NMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +E  V SHI  LR KL +K     + +    GY  + 
Sbjct: 182 -YDFYGDEKTVNSHIRNLRAKLGSKGS--CIVTVIRSGYKFEE 221


>gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   ++     +       +   D+  ++  L   G+   
Sbjct: 4   ILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIML--PGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKEIRLTKNTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIARFER 121

Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  +     +           R   V  +   L  +E  +L  L  N  +   K ++F
Sbjct: 122 LTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G +D   + + V  HI ++R+K+  +      +++   +GY  
Sbjct: 182 ETIWG-WDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKF 227


>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++        ++G ++      +    + +     +  ++           
Sbjct: 5   ILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVM--MPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R ++ +P+I IS   +    +   D G DD + KP +  E +ARV +  RR   
Sbjct: 63  HVLKEMRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHA 122

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +    ++         ++      QGE   L   E +++E  M N GK   K +I
Sbjct: 123 LKGDLQPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  ++G     V +N +   ISKLR KL +      + + R LGY ++ 
Sbjct: 183 YEYVWGDT-YVVADNNIMVAISKLRSKLCDDPSA-YIRTVRGLGYRMEK 229


>gi|242240125|ref|YP_002988306.1| DNA-binding transcriptional regulator BaeR [Dickeya dadantii
           Ech703]
 gi|242132182|gb|ACS86484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 243

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G +          E    +    +  ++  L   G   L 
Sbjct: 17  LIVEDEPKLGQLLVDYLQASGYATHWLTQGNDVEPWVRAHPCRLVLLDLML--PGRDGLS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR    
Sbjct: 75  LCQAIRGFSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCHWQ 134

Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +            +          G    L   E R+L  L A   +  ++ Q+   +Y 
Sbjct: 135 SEPTAVTDRPALLIDQYRYQASYLGRNLDLTPAEFRLLRILSAEPNRVFSREQLLDNLYD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEQFDQETSFIRTVYGIGYRWE 236


>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + +        DG  +    +      + ++   D++ I+            
Sbjct: 5   LIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIM--MPQIDGYH 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR +  +P+I +S        +   D G DD + KP +  E+LARV A  RR   S
Sbjct: 63  LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122

Query: 123 NNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  E    +                  +     L   E +IL YL+ N+GK   K QIF
Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++       ++N +  HIS LR K+ +       + + R LGY +D N
Sbjct: 183 EYVWEEP-FYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231


>gi|225573118|ref|ZP_03781873.1| hypothetical protein RUMHYD_01309 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039522|gb|EEG49768.1| hypothetical protein RUMHYD_01309 [Blautia hydrogenotrophica DSM
           10507]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 222

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F     S+           +      D+  ++  +        
Sbjct: 3   ILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMI--PYLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + + IR +S+VP+I ++     +  L  ++ G DD V KP   + ++A+V         
Sbjct: 61  TVCKSIRQNSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSVV 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   N      + +     + ++ G++  L  +E  +L +   N    +++  I   ++
Sbjct: 121 EQKETNIKNYNGLEINKLSNEVKIDGDIVNLSPKEYDLLIFFANNIDIVLSRDIILDKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G FD       V++H+ +LR+KL+ K     + + R  GY  + +
Sbjct: 181 G-FDYEGGLRTVDTHVKRLREKLKEK--AKFIVTVRGKGYKFEVD 222


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD  L+  G    F  +G  +      E    +  S   D   ++  L       + 
Sbjct: 20  LIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLML--PKIDGIT 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           L   IR  S V +I ++        +   + G DD + KP + RE    +  +     + 
Sbjct: 78  LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V  +  +   + V    R      EV  L  +E  IL  L+ N+G+   + +IF  ++G
Sbjct: 138 EVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWG 197

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                 +   ++ H+  LR+KL++ K     +++K  +GY  
Sbjct: 198 EPCY--DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    +         +A  D+  ++           
Sbjct: 5   ILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVM--MPQVDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R +R   S VP++ ++    ++  +   D G DD + KP         + A +    
Sbjct: 63  EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   + NR     +++ ++ R+    G+   L  +E  +L   M N  + +++  I   
Sbjct: 123 EQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYIL 225


>gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 243

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++G   L   +   +    +      L      D+  ++          L
Sbjct: 11  ILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDET-IDLVILDIM--MPKLNGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++   IR  S VP++ ++        L     G DD + KP  +                
Sbjct: 68  KVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQV 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +    E G I++ +   +    G    +   E +IL  +M + GK  +  
Sbjct: 128 YQGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQ 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+ +++         N V  HI KLR K+  +      + +    GY  +
Sbjct: 188 NIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238


>gi|227550019|ref|ZP_03980068.1| two component system response regulator [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227077928|gb|EEI15891.1| two component system response regulator [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 227

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +G   +          + +    D+  ++  L   G   +
Sbjct: 5   ILVVEDDPAINEMLTIVLESEGFETQSVTDGAEAVPVFNDYDPDIVLLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR + 
Sbjct: 63  DICREIRKVSAVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTEE 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T     +          G    L   E  +L  +     +  A+ ++  +++G 
Sbjct: 123 EPAEVLTIGDLTIDVPQHMVTRDGAEIALTPLELDLLLEMARKPNQVHAREELLESVWGY 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RN-ASDTRLVNVHVQRLRSKIEHDPENPEIVLTVRGVGYK 221


>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  +  +           D+  ++  L        
Sbjct: 4   ILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLML--PEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVREIKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 REIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 233

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +      E    +       +  ++          +
Sbjct: 6   ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+         
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        N  E G ++V    R   +  E   L  RE  +LE L+ N+G  +   QI+
Sbjct: 124 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232


>gi|154503273|ref|ZP_02040333.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
 gi|153796267|gb|EDN78687.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+  +GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAKGFAEGTAFMEALAFDTPELILLDIML--PGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           LEL + ++       +P+I ++   +    +   DSG DD V KP    E+    +    
Sbjct: 59  LELLKKLKNSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + V     + +V GE+  L  +E  +LE LM N+   + + Q+  
Sbjct: 119 RSGRVQEQDMLSVNGVSVDVKKHEVKVAGEIVTLTLKEFELLERLMRNQNIVLTRDQLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL  K   D + + R +GY I
Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGEKG--DIIKTVRGVGYRI 220


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
 gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
          Length = 233

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G +      +E           D+  ++  L   G   +
Sbjct: 5   ILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWML--PGGTGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++ +     +P+I ++        +  F++GVDD V KP   +E++AR+ A+ RR
Sbjct: 63  SLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +      +   +++        + G    L   E R+L + M +  +  ++ Q+   
Sbjct: 123 VSPTSLEEEVDFHGLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +  +   D V + R  GY  
Sbjct: 183 VWGT-NIYVEDRTVDVHIRRLRKAISGEGHEDFVQTVRGAGYRF 225


>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
 gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 6 str. 870]
 gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 5 str. 513]
 gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 3 str. 686]
 gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M163/99/10]
 gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis B2/94]
 gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M644/93/1]
 gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M13/05/1]
 gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 4 str. 292]
 gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M292/94/1]
 gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           neotomae 5K33]
 gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 3 str. Ether]
 gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 9 str. C68]
 gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
 gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 227


>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 231

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +++                 + +    L  +   D+  ++  L    G  +
Sbjct: 3   ILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGLDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
             + R   +   +P+I ++        +   + G DD V KP        R         
Sbjct: 63  CRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRRKG 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S+   +   + +          G+   L   E  ILE+L  ++G+  ++ QI +
Sbjct: 123 EAFRSNSDEDIKIRSLVISPLKHKVTQNGKEVELSATEFSILEFLARHKGQVFSRQQIIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           A+ G     V +  ++  I  +RKK+ +        +++ R +GY I
Sbjct: 183 AVKGSS-YPVTDRSIDVQILGIRKKIGDSPESSNPFIETLRGVGYRI 228


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      L      D+  ++  L        
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+ R ++      ++ ++   S+   +   D G DD + KP              R   I
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     +    +++    R      EV PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 231

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +  ++    S +           D   ++   +      L
Sbjct: 5   ILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALEENHIDFIVLDI--VMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    VP++ +S        +   + G DD + KP   +E+++R+ A +R++  
Sbjct: 63  DVCRSIRNSYNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFRKVDR 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +                    +  +      L  +E +IL  LM +    + + Q
Sbjct: 123 LFKEWDELSPSNEKADAPLILNDKTFEAFLNSRKLDLSTKEFQILSILMRHPNHVLTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYENVWG--DEYGEINTVTVHIKNIRKKLG--SEYDFIKTIWGIGYK 225


>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 234

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           GV++                R DV  ++  L   G+  LE
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLML--PGKDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR    
Sbjct: 68  VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 127

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         V    R   + G    L   E  +L  L    G+ +A+ Q+     
Sbjct: 128 AGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAG 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  +EA +   V+ H+S+LR+KL +       + + R  GY +
Sbjct: 188 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G     G +G ++   +  E    L  + + D+  ++  L       L
Sbjct: 5   ILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVML--PRMGGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
           E+ R IR    ++P++ +S        +     G DD + KP          + L R   
Sbjct: 63  EVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G I +  D R   V G    L  RE  +L + + +  +  ++ Q+ 
Sbjct: 123 SRGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            A++G          V++ +++LR  + +       +++ R +GY  + 
Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230


>gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator
           [Polaromonas naphthalenivorans CJ2]
 gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator,
           winged helix family [Polaromonas naphthalenivorans CJ2]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G ++E  ++         +    +  ++  L   G    
Sbjct: 3   ILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +   +R   Q+P++ ++   +    +  FD G DD + KP    E+LARV A     + 
Sbjct: 61  AVLSALRTSRQIPVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V +       + +          G+   L  +E  +L  L    G+ +++TQI S ++ 
Sbjct: 121 VVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 IH-FDSDTNVVEVAIRRLRAKIDDPFDDKLIHTVRGVGYVLE 221


>gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    DG  +      +    + S+    +  ++  L        
Sbjct: 7   ILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLML--PKMTGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+   IRA S VP+I ++        ++    G DD + KP   RE++ RV         
Sbjct: 65  EVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + V       + QG V  L   E +IL   ++N  +  ++ ++  
Sbjct: 125 DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +G  +    +  V+S+I  +R+K+  N      + +   +GY  
Sbjct: 185 KAFGA-NYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L        
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+ R ++      ++ ++    +   +   D G DD + KP              R   I
Sbjct: 63  EVTRRLQQEKNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +  +    +++    R      E  PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            L +S   D+  ++  L       L
Sbjct: 4   ILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGL--PDRDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+   +R H    P++ ++    +Q  +   + G DD + KP         +  R+    
Sbjct: 62  EVLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTNI 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +    R  +V  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 HQSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D     N+V+ ++  LRKKL +    D + + R +GY ++
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGD----DLIQTVRGVGYRLN 221


>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G S+    S      +      D+  ++           
Sbjct: 9   ILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVM--MPEMDGW 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ R +R  SQ+P++ ++     +  +   +SG DD + KP +  E+ AR+ A       
Sbjct: 67  EVCRRLREFSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 A  G I +    R+  V+GE   L   E  +L  L  + G  +    +   ++G
Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   + + ++ +I  LR+K+  +      + ++  +GY +
Sbjct: 187 -HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|326777535|ref|ZP_08236800.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657868|gb|EGE42714.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 244

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59
           +LI+D A V+DG   +    G  +E   + E    L +     R +++ ++  L   G  
Sbjct: 11  LLIEDDASVRDGMELVLRRHGYGVETAATGEQALALLAGERGARVELAVLDLML--PGMD 68

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E+ R IRA   ++P+I ++     +  +   ++G DD V KP+    + AR+ A  RR
Sbjct: 69  GFEVCRRIRARAPKLPVIMLTARGDDRDIVAGLEAGADDYVVKPVTAPVLEARIRAALRR 128

Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            +    +            +   + +   G      G    LP  E R+L  L A+ G+ 
Sbjct: 129 AEPYPRQGPAGQAPDADRTDHAGLVIDRAGLTVTKHGAAIALPPTELRVLLELSASPGRV 188

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + + Q+ ++++       +  +V++ + +LR K+ +       V + R  GY  
Sbjct: 189 LTREQLLASVWD-HSFLGDSRLVDAAVGRLRAKIEDLPSRPRYVQTVRGFGYRF 241


>gi|269138423|ref|YP_003295123.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267984083|gb|ACY83912.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304558449|gb|ADM41113.1| Response regulator BaeR [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      G      +  +           D+  ++  L+  G   L 
Sbjct: 19  LIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCDLILLD--LMLPGVDGLT 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 77  LCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGLQ 136

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +  +E  P+ +         + +   L + E R+L+ L    G  +++ Q+ + +Y  + 
Sbjct: 137 DTLSEPAPLLIDESRFQASYRQQPLDLTQAEFRLLKTLATQPGSVLSREQLLNHLYDDY- 195

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  V+SHI  LR+KL   +     + S   +GY  +
Sbjct: 196 RVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235


>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++  +      G      +  E           D+  ++  L    G  +
Sbjct: 5   ILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTSGVVL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R       VP+I ++     +  +   +SG DD + KP   RE++AR+ A+ RR  
Sbjct: 65  AKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRRHI 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +  +       +         +G    L   E R+L + M +  +  ++TQ+   ++
Sbjct: 125 PTLSEDKVASGGLELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G     VEE  V+ HI +LR  L        + + R  GY    N
Sbjct: 185 GT-QVFVEERTVDVHIRRLRASLEASGLDGLIQTVRGSGYRFSTN 228


>gi|89093375|ref|ZP_01166324.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
 gi|89082354|gb|EAR61577.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +   ++              V  ++  L   G+  +
Sbjct: 7   ILIVEDEVGLAEILRDYLEASGYLVTMIHNGLEVTGWVKQHNPAVILLDLML--PGKDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I  +        L   + G DD V KP   RE++ARV A  RR+  
Sbjct: 65  EICKEIRTFSNTPIIMTTARVEEIDRLLGLELGADDYVCKPYSPREVVARVKATLRRIAA 124

Query: 122 SNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         +    +     + GE   L   E R+++  + N+G+  +++Q+    Y 
Sbjct: 125 FSGNTPKTADPISLDEERFLAFIGGEQLELTPVEFRMMQTFLDNQGRVFSRSQLMDKAY- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
                V +  V++HI  LRKK++      + + S   +GY  ++
Sbjct: 184 TDQRVVSDRTVDTHIKNLRKKIQPHLPEGEVIHSVYGVGYKFEF 227


>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 226

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +               E          L      D+  ++  L   G   L
Sbjct: 6   ILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLML--PGRDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP+I ++        L   ++G DD + KP   RE++ARV      L+ 
Sbjct: 64  DICRELRGFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARV---KAVLRR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S        +            G    L   E R+L+ L+A  G+ + + Q+ + +Y   
Sbjct: 121 SGKPPPLPGLLTDPASYRAYCNGIPLDLTPVEFRLLDALLARPGQALTREQLMNHLY-ED 179

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
              V +  V+SH+  LR+KL +   G DP+ S   +GY ++W
Sbjct: 180 HRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCLEW 221


>gi|325831421|ref|ZP_08164675.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|325486675|gb|EGC89123.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 232

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   + D    L  + G +   F +       Q+    D+  ++      G    
Sbjct: 7   IAVCDDEQAIADLVGQLLVEAGFAPTVFYAAPDLLACQADDPFDLVILDIM--MPGMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
              R +R  S VP+I ++        +  F+ G DD V KP   RE++ARV A  RR   
Sbjct: 65  ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRAIS 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      E   I +        + GE   L  +E  IL  LM ++G+ VA   +F
Sbjct: 125 NDVAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +++G    A   N V  HI  LRKKL       + V++   +GY +
Sbjct: 185 ESVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231


>gi|300917087|ref|ZP_07133778.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300415654|gb|EFJ98964.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGHLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++ + D+  ++  L        
Sbjct: 12  LLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVML--PDMDGF 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K
Sbjct: 70  TVTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S        +       +  +    G +  L   E ++L YLM N G+ V+KTQI   +
Sbjct: 130 RSAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI-DWN 223
           +  +D   +  +VES+IS LR+KL             + ++R +GY + D N
Sbjct: 190 W-EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLLRDPN 240


>gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++    +    G ++      +  +        D+  ++  L   G   ++
Sbjct: 6   LVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWML--PGGSGVQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L + ++ H     +P+I ++     +  +   D+G DD V KP   +E+    +      
Sbjct: 64  LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRV 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   +++           E   +   E ++L + M +  +  ++  +   +
Sbjct: 124 TPTSNEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225


>gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1467]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +      +           D+  +   ++      +
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I ++   +    +    +G DD V +P +  E++ARV +I RR ++
Sbjct: 62  EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRSQM 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + E         +          ++G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G S+      +    + S  + D+  ++          L
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIM--MPKRNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ + +R  + VP++ +S        +    +G DD + KP +  E++        R + 
Sbjct: 64  EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +       +V GE   L   E  IL  L +N G+  +  +IF
Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++   D       V  HIS LR+KL     G   + +   +GY I+ 
Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231


>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 230

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +     F + G  +    +      + SSA  D+  ++  L   G+  LE
Sbjct: 7   LLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLML--PGKDGLE 64

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIY 116
           + R +R+      +P+I ++        +   + G DD V KP   RE       V    
Sbjct: 65  VCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRG 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E+G +RV        V GE   L   E R+L +L+ +RGK   + Q+ + 
Sbjct: 125 KPQPEEETLWESGGLRVDFGTYKVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++       V++H+ +LR K+        V++ R +GY +
Sbjct: 185 VWG-YEFEGYARTVDTHVRRLRHKIEPYAA--IVETVRGVGYRL 225


>gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 235

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +              S    +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  EAMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++                  DV  ++           
Sbjct: 4   ILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIM--MPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R K 
Sbjct: 62  SAYKEIKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKK 121

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N+         ++  DGR   V GE   L  +E  +L YL  N+   +++ Q+ + ++G
Sbjct: 122 LNDNRVMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   ++  V++HI  LR  +++      + + R +GY  + +
Sbjct: 182 -YDFYGDDRTVDTHIKMLRNSIKHY--RKFIVTVRGVGYKFEED 222


>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225


>gi|239982355|ref|ZP_04704879.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291454200|ref|ZP_06593590.1| response regulator [Streptomyces albus J1074]
 gi|291357149|gb|EFE84051.1| response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         S +  D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGLEGLHRASESPYDLLVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCAALRAAGNDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRA 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G +RV +  R  +  G+   L  +E  +LE L+   G+ V+K  I   ++
Sbjct: 121 GAGASPVHTVGGLRVDTAARRVQRDGDEVALTAKEFAVLEQLVLRAGQVVSKADILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL    G   + + R +GY ++
Sbjct: 181 D-FAYDGDPNIVEVYISALRRKL----GAQAIRTVRGMGYRLE 218


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 6/225 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   + +        +G S++     +           +   ++  L    G +V 
Sbjct: 7   LIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
              R    +S+VP+I ++        +     G DD V KP   RE    +  +    + 
Sbjct: 67  HKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQD 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +   E G + V +      V+     LP +E  +L  L+ N  +   + +I   I+
Sbjct: 127 FKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           G F  A     V+ H+ ++RKKL  + GFD  + +   +GY  + 
Sbjct: 187 G-FSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230


>gi|325262406|ref|ZP_08129143.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032238|gb|EGB93516.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 272

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD A + D        + + +           +  S +  +  ++      G    
Sbjct: 45  ILAADDEAELLDVLELYLERENIGIRKAKDGIEAMEIFRSEKVHLVLLDIM--MPGLDGY 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S++P I ++        +   + G DD + KP +  E++AR+ A  RR   
Sbjct: 103 AVLRKIRETSRIPAIMLTAKSEDYDKILGLELGADDYITKPYNPLEVVARIKAQLRRNYD 162

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQIF 174
                      +   G    V+            L   E +IL   M   G+   K QIF
Sbjct: 163 YREETGQNREVLRLRGLQLCVEEGNVELDGRAVELTSTEFKILRLFMGQPGRIFTKQQIF 222

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             ++       ++N V  HIS LR KL    G  P + + + LGY I+
Sbjct: 223 ENVW-EDSYEGDDNTVMVHISNLRGKLEQSGGQPPQIKTVKGLGYKIE 269


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++      +  S   DV  ++           
Sbjct: 5   ILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVM--MPQVDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E  R +R   S  P++ ++    ++  +   D+G DD + KP    E    +  +     
Sbjct: 63  EALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKT 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+R     + + +D R+    G+   L  +E  +L   M N  + +++  I   I
Sbjct: 123 GDDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGYIL 224


>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRKT 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TNKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D             E     +            +  ++  L       L
Sbjct: 6   ILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGL--PEMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R  S+VP++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 64  DVCRHLRRTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKRYGG 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + +    R   V      L   E  IL  L+A       + QI
Sbjct: 124 LTAAQTDEDLPALRFGAVELDRSQRHVSVAETPVTLTAIEFDILATLLARPKIVFTREQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + Y   +  V +  ++SHI  +R KL +    D +++   +G+ +
Sbjct: 184 LQSAY-RDNIHVSDRTIDSHIRNIRAKLGSAGCGDAIETVHGVGFRL 229


>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
           [Psychrobacter sp. 1501(2011)]
          Length = 232

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59
            ++++D   +++  +      G        +          R  +  ++  L G   G  
Sbjct: 6   ILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGNQSGID 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +    +     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR 
Sbjct: 66  LCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRS 125

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V +           +    +     G    +   E R+L + M++  +   +TQ+   +
Sbjct: 126 SVLSGEKPIEAEGLSLDPVSQRLSADGTPVEIGPTEYRLLAFFMSHPERAYTRTQLLDQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  ++ HI +LRK L        + + R  GY  
Sbjct: 186 WG-GNVYVEDRTIDVHIRRLRKVLEPYNYAGFIQTVRGTGYRF 227


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D        +               +  +   D+  ++  L         
Sbjct: 5   LVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVML--PDMSGWN 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + IR  S++P++ I+        L  F+ G DD V KP   RE+    +      +  
Sbjct: 63  VLKTIRESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKWA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N      I + +D R  +V G+   L  +E  +L  L  N GK +++ +  + ++G 
Sbjct: 123 ESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +   V++HI +LR+KL +K   D + +    GY +
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK--RDIIKTVWGYGYKL 219


>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 223

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +  +    + G S+           L      DV  ++           
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVM--MPKMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+ R +R  +  P++ ++    +   +   + G DD + KP    E++AR+     R   
Sbjct: 61  EVLRRLRKETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGPI 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   +++    R     G    L  +E  +L+   A+ G+ ++++ I S ++ +
Sbjct: 121 HEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+ +      + S R +GY  D
Sbjct: 181 -NFDSDTNVVDVAVRRLRAKIDDPFPLKLIHSVRGIGYRFD 220


>gi|228994834|ref|ZP_04154632.1| Response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764942|gb|EEM13698.1| Response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +   +G   +  + +      +    + D+  ++  L       
Sbjct: 13  ILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIMLDIML--PDLDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR +
Sbjct: 71  YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKIKAFFRRNQ 130

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G I +            +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YQEKARIMYQFGDITIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +       + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKLN 234


>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   +      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G         E    L S    D   ++       +    
Sbjct: 7   LIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVM--MPKQDGFA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           +   IR  S VP++ ++        +     G DD + KP    E++AR+       +R+
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++ R + G + +   GR   V G+   L  +E  +L +L  +RG+  ++  +   ++G
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGKPVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKD--AARHIQTVWGIGYKFE 223


>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 230

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           +  +IIR  S +P++ IS              G DD + KP    E+       + R   
Sbjct: 62  DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    AN  K   K QI+
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   +   ++N++  H+ +LR K+ +       + +   +GY +
Sbjct: 182 RSVWNE-EYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKL 227


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++  N          +   D+  ++  L       L
Sbjct: 4   ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+L        R + 
Sbjct: 62  EICRQIRQQQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELL-ARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      I +  +  +  V G    L + E  +   L  N+   + + QI + ++G +
Sbjct: 121 KKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NTEVETNVVDVYIRYLRNKLKPFGKDKVIETVRGVGYVI 218


>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F ++   +      +    L       +  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  SQVP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRIL 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     ++      I V    R   ++G    L   E  IL Y M N+   + + Q+ 
Sbjct: 123 TSKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQWIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL +K     + +   +GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGDK--AKYITTVVRMGYKFEGN 228


>gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWML--PGVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            R +R   +    P+I ++        +    +G DD V KP    E+    +      R
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E             +   ++  ++   +      L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDV--LMPRMDGL 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA    VP++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 71  TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG----------EVFPLPRRERRILEYLMANRGKRVAK 170
            +                                    L R E  +LE  +A+  + + +
Sbjct: 131 YAAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 EQILKAVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V         ++G  +    + +    + S+ + D+  ++  L       L
Sbjct: 8   ILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIML--PEMNGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           E+ + +R  +   P++ ++   S +      +SG DD + KP    E++AR       + 
Sbjct: 66  EICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSR 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + +N      I+V    +     G+   L   E ++L   +   G+ +++T++  
Sbjct: 126 NFNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G+ +  +  NVV+ +++ LRKKL  +     + +   +GY +
Sbjct: 186 NVWGV-NYDIGTNVVDVYVNYLRKKLEKENNDRLIHTVIGMGYVL 229


>gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIML--PGTDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R ++A      +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S   +    I                V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+  +I+G +    E   V+ HI  LRKKL        + + R +GY 
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYIKTVRGVGYK 223


>gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 216

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLTAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ GVDD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTKET 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 ETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIML--PGVDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ + + +    + +I ++        +   + G DD + KP +       I A +  + 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 71  EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + N      I V  D     +     PL  +E  IL+ L+ N+ K + +  I   ++G
Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++   E  ++++HI  +RKKL        + + + +GY ID 
Sbjct: 191 -YEYHGETRMIDTHIKNIRKKLD----ISYIKTVKGIGYKIDE 228


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    R D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            V +D R   ++G    L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
 gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWML--PGVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ++  + G I +  +      +     L   E R+LE+LM + G+  +++Q+   
Sbjct: 123 ARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSHMQDVIRTVRGAGYSME 226


>gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 250

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 18/234 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   +      G  +    S           + D+  ++  L   G   +E
Sbjct: 17  LVVEDDEDIRALIVYTLETQGFEVFAVGSGLEGVAAVRDRQPDLITLDLGL--PGIDGIE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR  S   ++ I+        L   ++G DD + KP   RE+ ARV A++RR +  
Sbjct: 75  ACRRIREISDAYVVMITARDDEIDRLLGLETGADDFIAKPFSARELKARVNAMFRRPRTG 134

Query: 123 NNRAETGPIRVFSDG-------------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                                       R     G+   L R E  +L  LM    +  +
Sbjct: 135 GGAQRPDAPAEDPHELLVHGPLRVDVEGRRAFRDGQELVLTRTEFDLLTELMRAPSRVWS 194

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           +  +  +++G  D A + ++VE H+  LR+KL          + + R +GY ++
Sbjct: 195 REALLRSVWGT-DWASDTHLVEVHVGNLRRKLAAGTDGSTRFIRTVRGVGYRME 247


>gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +             +    D+  ++      GE   
Sbjct: 7   LLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIM--MPGEDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  SQVP+I ++        +   + G DD + KP   RE+ AR+ A+ RR + 
Sbjct: 65  TLCQQIRRDSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRRAEF 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
                E  P R                         L   +  +L   +   G  + +  
Sbjct: 125 RQPEKEKEPSRRLRFAEWTLDTLSHQLTHDDGSLLDLSGSDAMLLGMFLQQPGVVLDRDT 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I  A  G  +    E  ++  IS+LR+KL +       + + R  GY +
Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYML 232


>gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 221

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D             + G S++          L      DV  ++  L         +
Sbjct: 1   IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGWGV 58

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVS 122
            + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+     R     
Sbjct: 59  LKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRE 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ + +
Sbjct: 119 TERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM-N 177

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 178 FDSDTNVVEVAIRRLRAKVDDAFPVKLIHTVRGVGYVLE 216


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D        +               +  +   D+  ++  L         
Sbjct: 5   LVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVML--PDMSGWN 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120
           + + IR  S++P++ I+        L  F+ G DD V KP   RE++AR+ AI    +  
Sbjct: 63  VLKTIRESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKWA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N      I + +D R  +V G+   L  +E  +L  L  N GK +++ +  + ++G 
Sbjct: 123 ESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +   V++HI +LR+KL +K   D + +    GY +
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK--RDIIKTVWGYGYKL 219


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 60  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 117

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 118 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 177

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 178 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 236

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 237 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 275


>gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +   ++           +  +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R +       +  ++      + +  FD+G DD + KPI  + +L++V A+ RRLK
Sbjct: 68  CEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRRLK 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                A    +   +  ++            LP++E  +L  L +  GK   +  I   I
Sbjct: 128 AEEGNATIVKVGNLTINKEEYKIILDGKEILLPKKEFELLSLLASKPGKVFKRENILERI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V    ++ HI K+R K+ +K     + + + +GY  
Sbjct: 188 WGN-EVVVGGRTIDVHIRKIRDKIGDKS----IKTIKGVGYKF 225


>gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G     G +G ++      E    L  + + D+  ++  L       L
Sbjct: 5   ILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVML--PRMGGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    ++P++ +S        +     G DD + KP   +E+LAR+ A+ RR +
Sbjct: 63  EVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122

Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +   IR         D R   V G    L  RE  +L + + +  +  ++ Q+ 
Sbjct: 123 ARGEGVQPKAIRRVGGIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            A++G          V++ +++LR  + +       +++ R +GY  + 
Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230


>gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia
           enterocolitica W22703]
          Length = 279

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 55  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 112

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 113 QFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 275


>gi|301048805|ref|ZP_07195803.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300299390|gb|EFJ55775.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWE 233


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E      +    D+  ++  L       L
Sbjct: 5   ILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLML--PKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S+  +  G               +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYL 230


>gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 231

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    + E      +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGEEGLAQAALGKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ R++  
Sbjct: 65  QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S   A  GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHVE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|271969946|ref|YP_003344142.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513121|gb|ACZ91399.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        +G S+   +              D+  ++          L+
Sbjct: 6   LVAEDDVKQAELVRRYLEREGHSVLVVHDGRSAIDEARRREPDLVVLDVM--MPKADGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IRA S VP++ ++   +    L   D G DD V KP   RE++ARV  + RR++ S
Sbjct: 64  VCRVIRAESDVPVLMLTARATEDDLLVGLDLGADDYVTKPYSPRELMARVRTLLRRVRRS 123

Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  ET  +      S      V G        E RILE L A   +   + Q+   ++G
Sbjct: 124 RDPEETLKVGDLLVDSARHRVSVAGSPVDCTPAEFRILETLAAQPERVFTRKQLLEEVHG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            FD  +    V+ H+  LRKK+         + +   +GY +
Sbjct: 184 -FDRFITRRTVDVHMLNLRKKIEPDPRRPTRILTVYGVGYKL 224


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +      +           D+  +   ++      +
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR ++
Sbjct: 62  EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSRM 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + E         +          ++G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
 gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   +      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +  + +   +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|282861156|ref|ZP_06270221.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563814|gb|EFB69351.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 220

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +       L      D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLAKGLTAEGFAVDVVHDGLEGLHLAGQGGYDLVVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA     P++ ++         +  D+G DD + KP  +  ++AR+ A+ RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIRALLRRRG 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G +R+ +  R      +   L  +E  +LE L    G+ V+K  I   ++
Sbjct: 121 GGSASPVLTAGTLRLDTAARRVHRGEDEVTLTAKEFAVLEQLAVRAGEVVSKADILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL        + + R  GY ++
Sbjct: 181 D-FAYDGDPNIVEVYISTLRRKLGAAA----IRTVRGAGYRLE 218


>gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +L++D   ++         +G  +  F          ++  ++DV  I   L+  G   
Sbjct: 14  ILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLNG 73

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112
           LEL R I       P++ +S   +    +   + G DD + KP          R ++ R 
Sbjct: 74  LELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRRS 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               + ++ S    E   I++F +            L  +E ++LE  M N  +  ++  
Sbjct: 134 KRNKKYIENSKTVLEFNHIKMFLEECRVTSFDREITLSPKEFKLLELFMKNPKRVWSRDL 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I   I+   D   +   V+ H+  LR+KL  +      + + R  GY  
Sbjct: 194 ILEKIW-EIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241


>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
 gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
          Length = 232

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +++    +      +++    ++           D+  ++  L G  G +  
Sbjct: 7   LVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGVEWA 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              +    +  +PLI ++     +  +   D G DD V KP   RE++AR+        R
Sbjct: 67  RRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRSNR 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R E G I + +D     +  E   L   E R++E+ + +  K  ++ Q+   ++
Sbjct: 127 QSKLDGRIEIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLDQVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ HI +LRK L      D + + R  GY  
Sbjct: 187 GRSAY-IEERTVDVHIRRLRKILSEHDREDMIQTVRGFGYRF 227


>gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 225

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +   ++D   +++             E F           + + D+  ++  L G  G  
Sbjct: 3   LIYCVEDDENIRELVRYALCSQKFQAEAFPDGPSFWKALEAKQPDLVLLDIMLPGESGLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           +L+  R  +A S +P+I ++   S    +   D+G DD ++KP         + A +   
Sbjct: 63  ILKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAGADDYISKPFGIMELLSRVKAVLRRG 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R+     N    G I +         QG+   L  +E  +L YLMAN G  +++ QI  
Sbjct: 123 GRQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELTVKEFDLLHYLMANAGIVLSRDQIME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++  F  A E   ++ HI  LR+KL        + + R +GY I
Sbjct: 183 AVWS-FSYAGESRTIDMHIRSLRQKLGEAG--RIIQTVRGVGYRI 224


>gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 247

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   +              DV  ++  L   G+  +E
Sbjct: 22  LVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGL--PGQDGIE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           + R +R  S   ++ ++       TL     G DD + KP   RE+      + R     
Sbjct: 80  VCRQLRTFSDAYVVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPRPI 139

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +   GRD  +  +   L R E  +L  L    G   ++ Q+   
Sbjct: 140 DGANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLIDQ 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++G      ++++V+ HI  LR+KL +       + + R +GY +
Sbjct: 200 VWGGT-WVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGYRM 243


>gi|323528722|ref|YP_004230874.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323385724|gb|ADX57814.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 225

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G S++  N       L      DV  ++  L        
Sbjct: 3   ILVIEDEPKTGAYLKKGLEESGYSVDLANDGADGLLLAQEQDYDVIVLDVML--PTMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + +++RA    P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  AVLKVLRATHTTPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +  + R  +       L  RE  +L+ L+  +G+ +++TQI S ++ +
Sbjct: 121 RESELLAIGDLEMDINRRRVKRGATRIDLTPREFSLLQLLLRRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIQTVRGVGYVIE 220


>gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++        +G  +   +S        ++   D+  ++      GE  L
Sbjct: 8   LLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR+  
Sbjct: 66  SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAS 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
              R        ++         E           PL   E  ++        + +++ Q
Sbjct: 126 GGQRVTAPDGATYAFAGWLLKSQERTLIDSEGVSLPLSTAEYNLMLAFATRPNQVLSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ IS+LRKK+  +      + +    GY++
Sbjct: 186 LLDITQGREANAFD-RAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 233


>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
 gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 241

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         + G+ +    +             DV  ++  L   G   LE
Sbjct: 16  LLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLML--PGRDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++        +   ++G DD + KP   R     I A+V      
Sbjct: 74  VCRELRTRSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRARGN 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S      G +++        + G+   L   E  +L  L    G+ +++ Q+   I 
Sbjct: 134 AGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDLIK 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  DE V +  ++ HI +LR+KL         + + R  GY +
Sbjct: 194 GSADE-VFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235


>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 232

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S +  D   ++          L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++    P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E           +    R+         L R E  +L   + N  + + ++ + 
Sbjct: 123 PEPGPDEAPEQLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEARLIHTVRGVGYVLREAN 231


>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
 gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  +   +           D++ ++           
Sbjct: 5   ILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVM--MPDLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR H   P+I ++   +    ++    G DD + KP +  E+ ARV    RR   
Sbjct: 63  SLLKKIRKHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYLR 122

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N    T                    +  +   L   E  IL YL + RG  V   ++F
Sbjct: 123 YNQNPSTNQHIYDFNGLVINNHTHKCTLYDQPLNLTPIEFSILWYLCSKRGNVVTSEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            A++         N V +H+++LR+K+  N      + +   +GY+I+
Sbjct: 183 EAVWQEKYLD-NNNTVMAHVARLREKMHENARKPKFIKTVWGVGYTIE 229


>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 620

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       + G ++      +    +       +  ++          +E
Sbjct: 6   LVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIM--MPKMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115
           + R +R    +P++ +S        +    +G DD + KP +        + ++ R    
Sbjct: 64  VCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  + G + +  +     V G    L  RE  IL  L  N+G+  +  +IF 
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++         N V  H+S++R K+     G   + +   +GY I+
Sbjct: 184 KVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229


>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
           12D]
 gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
 gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 10/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R      Q+P+I ++     Q  +   DSG DD V KP   +E+LAR+ A+ RR  
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                 +             L   E R+L +LM +  +  +++Q
Sbjct: 125 PQLTDDVVAINGLKLDPATHRVTATNVEAENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWML--PGVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            R +R   +    P+I ++        +    +G DD V KP    E+    +      R
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKTREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CNPAF512]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWML--PGVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            R +R   +    P+I ++        +    +G DD V KP    E+    +      R
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V ++  + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +  ++               A  D+  +   ++       +
Sbjct: 10  LVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLL--DVMMPRLDGWQ 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IR  S VP+I ++    +   +     G DD + KP   RE+ ARV A+ RR    
Sbjct: 67  TLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126

Query: 123 NNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       +           G   PL  +E  +L  L A+ G+  ++ ++   I+G
Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   +   V++HI  LR KL    G   + +   +GY  
Sbjct: 187 -PDFQGDARTVDAHIKNLRDKLGE--GAGLILTVWGVGYRF 224


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E   + E           D+  ++  L   G   +E
Sbjct: 7   LIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIML--PGLSGME 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S++P+I ++        +   D G  D + KP    E+LAR+  + RR K  
Sbjct: 65  ICRRVRKESEIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRNKRD 124

Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   ++      + R+  V  EV  L ++E  +L YL+ N+G  +++ QI   ++G
Sbjct: 125 AGMDSILRVKNLVLNQETREVRVNDEVVELTKKEYNLLLYLLKNKGIVLSREQIIEDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N+V+ +I  LR K+ ++     +++ R +GY I
Sbjct: 185 -YDYPGDTNIVDVYIRYLRSKIDDECKETYIETVRGVGYVI 224


>gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 223

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +    +      + +  R  +  ++  +    G + 
Sbjct: 5   ILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMDGAQT 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R         ++ +S        L  FD G DD + KPI  + +++RV AI +R+ 
Sbjct: 65  CRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAILKRID 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +       V  +       G+   LPR+E  +L+ L ++ GK + + +I++ I+
Sbjct: 125 ADRPPEKAPAPGLTVDRERYTVIRDGQEITLPRKEFALLDLLHSSPGKLIPREEIYAKIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  +  V +  ++ HI KLR+K+ +    + + + + +GY  +
Sbjct: 185 GT-EVVVGDRTIDVHIRKLRQKIGD----ERIVTVKGVGYKYE 222


>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G      ++      L  +    +  ++          +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    +G DD + KP +  E+LARV +  RR   
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN    G                   + ++  +   L  RE  ILE L  NRG   +  
Sbjct: 124 LNNSNGNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +I+  ++   +     N V  HI KLR+K+         + +   +GY ++ 
Sbjct: 184 KIYELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 234


>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVMVDKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWML--PGVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            R +R   +    P+I ++        +    +G DD V KP    E+    +      R
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +                  D+  ++  L        
Sbjct: 8   ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVML--PELNGF 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115
           E+ + +R   +  P++ +S        +   + G DD V KP   +E             
Sbjct: 66  EVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRY 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S      G + V    R          L  +E ++L + +A+ G+   + ++ S
Sbjct: 126 PSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             +G +        V++ + +LR K            + R LGY  +
Sbjct: 186 GAWG-YHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231


>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G    +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  S    DV  ++  L   G    E
Sbjct: 4   LVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLML--PGLDGFE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ +S    +   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRGTH 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   +R+   GR     G    L  +E  +LEYLM + G+ +++T I   ++  
Sbjct: 122 ERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F      NVV+ +I+ LR+K+    G   +++ R  GY +
Sbjct: 181 FAYDGTSNVVDQYIAYLRRKIDRPFGISQLETVRGAGYRL 220


>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius UCC118]
 gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius UCC118]
 gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 233

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++  N+         + + D   ++  L   G   +E
Sbjct: 5   LVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLML--PGIDGIE 62

Query: 63  LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILARV 112
           + + IR       I  ++        +   + G DD + KP   R         +     
Sbjct: 63  ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +        N       +         +    +  L  +E  +L Y +  +G+ + + +
Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + + ++G FD   +  +V+ H+S LR+K+         + + R  GY  +
Sbjct: 183 LLNNVWG-FDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFE 231


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +S E         R D+  ++  L   G   L
Sbjct: 8   ILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGL--PGISGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S +P+I +S   + +  +   D G DD V+KP         +   +    +
Sbjct: 66  EVCRKVREQSNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + GP+RV    R  +V+G+   L   E  +L+ L+ N GK + +  + S +
Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E + +  +I +LR+K+  +      + +   +GY  +
Sbjct: 186 WGTG-YGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGYRFN 229


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++G + +     E       +   D+  ++  L       +
Sbjct: 17  ILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLML--PRLDGM 74

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           E+ R +     + P++ ++   ++   +   D+G DD + KP      +    A + R  
Sbjct: 75  EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G + + +  R          L  +E  +LEYLM N  + + +TQI   ++ 
Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D +   N+V+ +I  LR+K+ +      + + R  GY +
Sbjct: 195 -YDFSGMSNIVDVYIRYLRRKIDDNFEPKLLYTIRGSGYCL 234


>gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2]
          Length = 229

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++    +    G ++      +  +        D+  ++  L   G   ++
Sbjct: 6   LVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWML--PGGSGVQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + ++ H     +P+I ++     +  +   D+G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVMRRV 123

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++N         ++           +   +   E ++L + M +  +  ++  +   +
Sbjct: 124 TPTSNEEPIEFNGLKLEPVSHRVMANEDPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++         G  +           L      D+  ++  L        
Sbjct: 8   LVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVML--PDMDGF 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R +R     +P++ ++     Q  +     G DD V KP         +  V     
Sbjct: 66  TVTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V +       + +  D  +    G V  L   E ++L YLM N G+ ++K QI   +
Sbjct: 126 PTPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           +  +D   + N+VES+IS LR+K+ N    D       + +KR +GY +
Sbjct: 186 W-QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLL 233


>gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 241

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +++         G      ++ E  E L      D++ I+  L G  G  + 
Sbjct: 12  LVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLPGKSGLALT 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +P+I ++        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 72  GRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRCAP 131

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +      PI + +   +  V G+   L   E R+L +L+AN G+  ++ Q+   ++G
Sbjct: 132 EFVKGTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNVWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +E+  V+ HI +LR  L        V++ R +GY +
Sbjct: 192 DHVY-IEDRTVDIHIRRLRVALG-PAAEQMVETVRGVGYKL 230


>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 225

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 232

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++++         G  +                  D   ++  L   G   +
Sbjct: 10  ILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVML--PGLDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP++ +S        +   ++G DD V KP   + ++AR+ A+ RR   
Sbjct: 68  SVCRRIRETSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRRAVS 127

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              R            G + +  +  +    G    L   E ++L     N G  ++++ 
Sbjct: 128 DPERPAPTSGAGVESFGDLELDREALEVRRGGSTVQLTPTELKLLIEFANNPGVVLSRST 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++  ++   +  +V+ H+ +LR K+    G D +++ R  GY +
Sbjct: 188 LLQRVWD-YEWGGDGRLVDVHLQRLRTKI----GADRIETVRGFGYKL 230


>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
 gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G   E   +             D+  ++  L   G   +
Sbjct: 7   IFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVML--PGMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    ++  +   D G DD + KP    E++AR+    R+   
Sbjct: 65  TICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N       R +   + ++    + EV GE   L ++E  +LEY+M N+   + + QI  
Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G +D + + NVV+ +I  LR KL ++     + + R +GY
Sbjct: 185 KVWG-YDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226


>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  F       +  +      V  L   E  +L  L+   G+ V+ + I 
Sbjct: 124 RIPQAAKHSEILSFGPLTLVPERFEAVWFESVVKLTHLEFELLHCLLQRHGQTVSPSDIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 229

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|312172890|emb|CBX81146.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 235

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    +                +           D+  ++  L       
Sbjct: 9   LILIVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVVDWVKQHAPDMVLLDLMLPA--MDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S++P++ ++        L   + G DD + KP   RE++ARV  I +R +
Sbjct: 67  LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRCR 126

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T     +           +   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RVTEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWE 228


>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 233

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G  +    S E    L    + DV+ ++  L   G    E
Sbjct: 10  LLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIML--PGIDGFE 67

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +I+      + +I ++        ++  + G DD + KP + RE++ R+ ++ RR   
Sbjct: 68  VCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSPQ 127

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N ++             R     G+   L   E  I++ LM N GK + + ++    +
Sbjct: 128 KQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKAW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G  D   +  +V+ ++ +LR K+         + +   +GY  +
Sbjct: 188 GE-DFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 230


>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 236

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++    A   D G  +              ++  D+  ++  L   GE  L
Sbjct: 4   ILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTVDLIILDLML--PGEDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA    P++ ++        +   + G DD + KP H RE+LAR+ +I+RR + 
Sbjct: 62  ALCRTIRARQTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRRSEQ 121

Query: 122 SNNRAETGPIRVFSDG------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N       +                    V PL   E R+L+ L  +    +++ Q+  
Sbjct: 122 QNQAQPPRHLHFSGWTLDLAARHLMSADQVVIPLSTGEFRLLKTLAEHPNTVLSRDQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           A+ G  +    +  ++  +S+LR++L +       + + R  GY +
Sbjct: 182 ALAGR-EADPLDRTIDVMMSRLRRRLGDDAREPTLIKTIRNEGYML 226


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGL--PDFDGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV    R  + 
Sbjct: 63  EIARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +           R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 123 GEVISIGALEIH-PQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 235

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +     +G SL      E           D+  ++          +
Sbjct: 5   ILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLM--MPKVDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR HS VP++ +S   S          G DD V KP    E+ AR+ +  RR   
Sbjct: 63  EVIRRIRTHSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              + +               R+  D            L  +E  IL+  +AN  +   K
Sbjct: 123 YARQQQQEEQPQAQILTYGSLRIDFDHFIVIRNENEIQLTAKESDILKLFVANPNRVFTK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q++  I+   D   +ENV+  HI +LR+K+  +      + +   +GY  +
Sbjct: 183 AQLYGFIW-KDDYMGDENVINVHIRRLREKIEKDPSHPVHIKTLWGIGYKWE 233


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +  + +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 227

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +          +G  +   +       L    R  +  ++  L    G  V 
Sbjct: 4   LVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGLDVC 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
              R     +++P++ ++        +   + G DD + KP   +E++ARV         
Sbjct: 64  RRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRRSEE 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +  D     ++     L  +E  +L+ L+  +G+ + +  +   ++G
Sbjct: 124 VQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDRVWG 183

Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 +E   V+ H+ +LR+KL        + + + +GY  +
Sbjct: 184 YERASEIESRTVDVHVRRLREKLG--PEAARIVTVKSVGYRFN 224


>gi|238919096|ref|YP_002932610.1| DNA-binding transcriptional regulator BaeR [Edwardsiella ictaluri
           93-146]
 gi|238868664|gb|ACR68375.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      G      +  +           ++  ++  L   G   L 
Sbjct: 19  LIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCNLILLDLML--PGVDGLT 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 77  LCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCMLQ 136

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +  +E  P+ +         + ++  L + E R+L+ L    G   ++ Q+ + +Y  + 
Sbjct: 137 DTLSEPTPLLIDESRFQASYRQQLLDLTQAEFRLLKTLATQPGCVFSREQLLNHLYDDY- 195

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  V+SHI  LR+KL   +     + S   +GY  +
Sbjct: 196 RVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235


>gi|319945731|ref|ZP_08019982.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748091|gb|EFW00334.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 217

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +      +    L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGNEVFEAGDGQEALDLFHREAPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++ +      L  F    D    +      +L        +   
Sbjct: 61  EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 231

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++                   D+  ++          L
Sbjct: 5   ILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIG--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRQTSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I +   GR          +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAAPDRRHAALVAGEIILDRHGRTVMFGDSALAMTGLEFAILEALLSRPGMVFSREQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A YG     V +  ++SHI  +R K     G   + +   +G+ +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFTAVGGSGIIATVHGIGFKL 226


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N +  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 240

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +             +    D+  ++      G+   
Sbjct: 7   LLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHSPDLIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  SQVP+I ++        +   + G DD + KP   RE+ AR+ A+ RR + 
Sbjct: 65  TLCQQIRRDSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRRAEF 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
                E  P R                         L   +  +L   +   G  + +  
Sbjct: 125 RQPEKEKEPSRRLRFAEWTLDTLSHQLTHDDGSLLDLSGSDALLLGMFLQQPGVVLDRDT 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I  A  G  +    E  ++  IS+LR+KL +       + + R  GY +
Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYML 232


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++   S +       +   D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIML--PKVSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ + IRA   +P+I +S        +     G DD + KP        R          
Sbjct: 62  EVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K          + + +  R   V  +      +E  +L++++++  + ++K  +F  
Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+G FD + + + V  HI KLR+KL         +++    GY  +
Sbjct: 182 IWG-FDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRFN 226


>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 227

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++   ++      + +    D+  ++          +
Sbjct: 5   ILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVM--MPILDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
                IR +  +P+I +S        +     G DD V+KP    E+        R    
Sbjct: 63  SACIKIRENYTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +++      + +  D  +  V+G+   L  +E  ILE L  NRG   +  +++ 
Sbjct: 123 FNVEPQNSSIVTIEDLTINFDTHEVTVRGDKVKLTPKEFDILECLARNRGMVFSVQKLYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+   +  V +  +  HI+ LR+K+  +      V +   +GY I
Sbjct: 183 IIW-KEEFVVSDTSIVVHITNLRQKIEIDPKRPKYVKTVWGVGYKI 227


>gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 231

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIML--PDASGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N         +            +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGYKIEK 231


>gi|223985998|ref|ZP_03636030.1| hypothetical protein HOLDEFILI_03336 [Holdemania filiformis DSM
           12042]
 gi|223962054|gb|EEF66534.1| hypothetical protein HOLDEFILI_03336 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  +  +  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFTMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRRVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            + +DD   +       F  +    +    + E    +  S   D   ++  L   G   
Sbjct: 15  ILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIML--PGLDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR    VP++ +S        +   + G DD + KP   RE+LARV A +RR++
Sbjct: 73  METCRRIRQQHTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRRVE 132

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                           +     +  + GE   L  +E +IL +L  +  + +++ Q++  
Sbjct: 133 RMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLYQK 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I+G   E  + N V  HI  +RKKL    G D + +   +GY   W
Sbjct: 193 IWGQ--EFGDLNTVTVHIKNIRKKL----GRDCIKTIWGVGYKFAW 232


>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
 gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +     A    +G  +              S    +  ++      G    
Sbjct: 4   ILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIM--MPGMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +   IR  S  P+I ++    +   L   ++G DD ++KP    E++ARV         
Sbjct: 62  SVLEKIREKSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +  + G + +  D     + G+   L  R+  +L +L     +   + Q+   ++
Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G+ D    +  V+  + ++R+ L +    +  + + R +GY  
Sbjct: 182 GM-DYDGSDRAVDLAVKRIRQALTDWPETEGEIRTLRGMGYQF 223


>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 250

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E             +   D+  ++  L   G   LE
Sbjct: 30  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGL--PGMDGLE 87

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R+     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 88  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 208 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 249


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +      +           D   ++  L   G   L
Sbjct: 5   ILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLML--PGVDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R IR  ++  P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 63  EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ + L +   R     + +    R+ +++GEV  L  RE  +L Y   + G+  ++  +
Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +    D + +    GY  
Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 15  ILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 73  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 132

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +  + +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 133 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 192

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 193 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 239


>gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 239

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++             DV  ++  L   G   +E
Sbjct: 19  LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGL--PGLDGIE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S+  ++ ++        L+    G DD + KP   RE++ARV A+ RR + +
Sbjct: 77  VCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 136

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  E   +     +     +  V G+V  L R E  +L  L     +  ++ Q+   ++
Sbjct: 137 VSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +E +V+ HI  LR+KL        +D+ R +GY +
Sbjct: 197 D-PAWVGDERLVDVHIKNLRRKLDANPA-RYIDTVRGVGYRM 236


>gi|134102881|ref|YP_001108542.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915504|emb|CAM05617.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 228

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 86/219 (39%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +            + D+  ++  L   G   ++
Sbjct: 9   LVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLML--PGMNGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR    
Sbjct: 67  VCKAIRTESVVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDAE 126

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +     +   G +    G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 PAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 224


>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 219

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +     +      L      D+  ++  L        
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGL--PDIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + +R     VP+I ++   S+   +   + G DD + KP    E+    RV      
Sbjct: 62  EVLQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDT 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ S+++
Sbjct: 122 TGPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G   V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218


>gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 231

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  +         E    + + D+  ++  L   G    
Sbjct: 4   ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIML--PGRDGF 61

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+ +A    P++ ++   S    +     G DD + KP     +LARV A+ RR  
Sbjct: 62  SVCSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRAT 121

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +            R + G   +  D R+  +  +   L  +E R+LEYL+    K +++ 
Sbjct: 122 MASSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++  +        V+ H++KLR+KL        + + R  GY  
Sbjct: 182 QIMDEVWS-YSSEATSRTVDVHVAKLRQKLGETAIPRHILTIRGRGYKF 229


>gi|311739823|ref|ZP_07713657.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304896|gb|EFQ80965.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 230

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G+                    D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLESEGLKPIPVMDGNDAVPAFEQHEPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRAIRRESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        V         + +     L   E  +L  +    G+   +  +  +++G
Sbjct: 123 AESEILEVADLVIDVPEHTVRRTDGTELNLTPLEFDLLLEMARRPGQVHTRESLLESVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             + A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 YRN-ASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222


>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++      F  +   +    S E         + D++ ++  L   G    
Sbjct: 3   ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVML--PGMNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           E+ + +R    ++ +I ++        +     G DD V KP +  EI  RV A+ R   
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +++  E    ++    +    +     +  +E  +++  M N GK   + ++ +
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224


>gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  ++               + D+  ++  L        
Sbjct: 4   ILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLK--DGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    R ++ +P+I +S        +   + G DD + KP   RE+L+R+    RR   
Sbjct: 62  AVCSAARENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   IRV +        G    L   E R+L   + N+G  ++++++   I+ + 
Sbjct: 122 AGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLLLVFLNNKGAVLSRSRLLEEIWNIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            E V +N +  +I +LR+K+ +       + + R LGY 
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYK 220


>gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
 gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
          Length = 225

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G  ++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +       + G DD + KP    E+LARV     R   
Sbjct: 61  SVLKRLRDTHATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY+++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDAFPLKLIHTVRGVGYALE 220


>gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
 gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
          Length = 227

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +   ++ +            +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R +  H +  +  ++      + +  +D+G DD + KPI  + ++++V       +
Sbjct: 68  CEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVKALLRRLK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++  + G + +  +        +   LPR+E  +L  L +  GK   +  I   +
Sbjct: 128 EEEEGDSSVKIGDLVINREEYKIIKDKKEMVLPRKEFELLSLLASKPGKVFKREDILDKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V    ++ HI KLR+K+ +K       + + +GY  
Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGDKK----FKTIKGVGYKF 225


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    +          A  D+  ++  L   G    
Sbjct: 4   ILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLML--PGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 62  EVCRQLRTRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +T       R+  D     V+GE  PLP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGYKFE 225


>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G      +       L      D+  ++  L        
Sbjct: 3   ILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVML--PELNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S+VP++ ++   S+   +   + G DD + KP  + E+LARV  + RR   
Sbjct: 61  QVIQTLRQFSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSSA 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      ++            +  L  +E  +L +L  ++G+ + +TQI S ++ +
Sbjct: 121 KVVEQLQVENLKIDLLEHKVYRDRNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +   + NVV+  + +LR K+ +      + + R +GY +D N
Sbjct: 181 -NFDTDTNVVDVAVRRLRAKIDDAYQPKLIHTIRGMGYKLDTN 222


>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
 gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S++ A        +        + G    +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPSDSEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +   +   N+      L      D+  ++      G    E
Sbjct: 6   LIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVM--MPGMDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           +   +   S +P+I ++   S Q  L  F  GVDD + KP    E+ AR+          
Sbjct: 64  VCSRLHELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQRS 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N       I           + ++ PL   E R+LEYL  N+G+ V++ ++   
Sbjct: 124 LPAQRKNQITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G++  + + + V  +I  LR+K+  +      + + R  GY +
Sbjct: 184 VWGVYLSS-DRSAVRRYIWLLRQKIESDPTHPRWIRTVRGYGYRL 227


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++     A     G  +   N       L    + D+  ++  L        
Sbjct: 4   ILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVML--PERNGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I ++        L   + G DD + KP    E++ARV A+ RR  +
Sbjct: 62  EILQYIREKSSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRSVI 121

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ET      ++        + G       R+  +L +L  N  +   + Q+   ++
Sbjct: 122 LVKDQETRLFGSLKINFQSHHVTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G+ D    +  V+  I ++RK L N  +    + ++R +GY  
Sbjct: 182 GM-DYGGSDRAVDLAIKRVRKTLENWPVQEGEIKTQRGVGYQF 223


>gi|254522529|ref|ZP_05134584.1| two-component system response regulator [Stenotrophomonas sp.
           SKA14]
 gi|219720120|gb|EED38645.1| two-component system response regulator [Stenotrophomonas sp.
           SKA14]
          Length = 234

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G+  E  +         +  + D+  ++  L  +    +
Sbjct: 16  ILIVEDEPRLAAVLRDYLAAAGMVSEWVDDGGQVIEAFARYQPDLVLLDLMLPQR--DGV 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 74  DLCRELRASSNVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVVAVLRRYRP 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +          G+   L   E R+L  L+A  G+  A+ ++   +Y   
Sbjct: 134 DPAARTNSGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 193

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V+   V+SH+  LR+KL +     +P+ S   +GYS +
Sbjct: 194 RVVVD-RTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 233


>gi|295093072|emb|CBK82163.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+    G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223


>gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A           + G +++          L   +  DV  ++  L        
Sbjct: 3   ILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVML--PSIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA    P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  TVLKTLRATQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   T     V    R  +  G+   L  +E  +L+ L+  +G+ + +TQI S ++ +
Sbjct: 121 RENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +   + NVVE  I +LR K+ +      + + R +GY 
Sbjct: 181 -NFDSDTNVVEVAIRRLRGKVDDDFPVKLIHTVRGVGYV 218


>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
 gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
          Length = 255

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 34  IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 91

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 92  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 152 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 212 VWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 254


>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +         G  ++  N+ +       +    +  ++  L        
Sbjct: 4   ILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLML--PNVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKRVREEKNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 182 QEIWDM-ESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRF 227


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGL--PDFDGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV    R  + 
Sbjct: 63  EVARRLRKTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                           R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 123 GEVITIGALEIH-PQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGVIRTVRGIGYAL 219


>gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNICITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + +    +    + D+  ++      G   +
Sbjct: 4   ILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVM--MPGMDGI 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYR 117
           E+   IR       V +  ++      + +   D+G DD ++KPI  R +++RV A + R
Sbjct: 62  EVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  V      T  + +  +       GE   LP++E  +L  L +       +  I   +
Sbjct: 122 KESVQAKPTGTPDLVINREKYLVIKNGETLHLPKKEFELLSLLASRPEVVFERDLILERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V +  ++ H+ KLR+K+ +    D + + + +GY  
Sbjct: 182 WGT-DIIVGDRTIDVHVRKLREKIGD----DYIQTVKGIGYKF 219


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +F +   ++E     E        A  D+  ++          L
Sbjct: 12  ILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIM--MPKIDGL 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + IR      P++ ++    ++  +   D G DD + KP    E++ARV A   R  
Sbjct: 70  AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   +++ +  RD    G+   L  RE  ILE+L+ N+ + V++  +   ++G
Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD     N ++ HI  LR K+ N      + + R +GY I
Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIENFDNNRIIQTIRGVGYII 231


>gi|210610542|ref|ZP_03288468.1| hypothetical protein CLONEX_00658 [Clostridium nexile DSM 1787]
 gi|210152401|gb|EEA83407.1| hypothetical protein CLONEX_00658 [Clostridium nexile DSM 1787]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V E+ + + IS++R K+    G   + +   +GY 
Sbjct: 182 WDIDERFVNEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +   +         +      +       +A + +  +   ++       
Sbjct: 10  ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++ + +RA S VP+I  +   S    +   + G +D + KP   +E           A  
Sbjct: 70  QVCQRLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAAR 129

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +    V  +  E G   + S  R   ++G    L   E R++E L +  G   ++  
Sbjct: 130 RQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGD 189

Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I  A++G   + A +   V+ HIS+LR KL         + + R  GY  
Sbjct: 190 ILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239


>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
 gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIML--PGMDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ +I+ +  + + +I ++        +   + G DD + KP +       I A +  + 
Sbjct: 62  EVCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGYR 224


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G  +              +A  DV  ++  L   G   L
Sbjct: 6   ILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNL--PGMNGL 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           ++ R +RA      +P+I I+        +  +  G DD V KP +++ +L +V      
Sbjct: 64  DVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +  +   +++         + E   L   E R+LE L+   G+  ++ Q+  
Sbjct: 124 AQGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQPGRAFSRKQLME 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A  G  +  V E  ++ HI  LR+KL    G  D +++ R +GY  
Sbjct: 184 AAIG-DNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGYRF 228


>gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
 gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +++      G +G  +           +  +   D+  ++  L    G  + 
Sbjct: 6   LVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMDGNDIC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
              +  ++ + +P+I +S        +     G DD + KP   +          + AA 
Sbjct: 66  YRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATIKRAAQ 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + L    +      + +         + +   L   E  +L +L    G+   + +I  
Sbjct: 126 NKDLSHDEDILRHEKLVMNKADFSITYEEQPVKLTAVEYNLLYFLCKKPGRVYTRERILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I G  D  +    V+ HI  LR+K+        +++ R +GY I
Sbjct: 186 EIRG-DDVIITGRTVDVHILSLRRKI--PGFESYIETVRGVGYRI 227


>gi|256396695|ref|YP_003118259.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362921|gb|ACU76418.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G         +    +    + D+  ++  L   G   ++
Sbjct: 9   LIVDDDIALSEMLGIALRGEGFETTSVADGDRALQVFRDFKPDLVLLDLML--PGRDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+IR  S VP+I ++        +   +SG DD V KP   +E++ARV A  RR    
Sbjct: 67  VCRLIRGESGVPIIMLTAKSDTVDVVVGLESGADDYVIKPFKVKELVARVRARLRRADEP 126

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G   + +G   PL   E  +L  L     +   +  +   ++G +
Sbjct: 127 KPETLAIGDLSIDVAGHSVKREGRQIPLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKIEVDPENPEIVVTVRGVGYK 224


>gi|296122126|ref|YP_003629904.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014466|gb|ADG67705.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++    A   ++G  +    + E    + S+   D+  ++  L        
Sbjct: 8   ILIIEDEQPIRRFLKASLSNEGYRVSEAVAGEEGLRMASAQPPDLVILDLGL--PDLDGQ 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ + +R     P+I +S        +   DSG DD + KP    E    +        R
Sbjct: 66  DVLKRLREWYTSPVIVLSARDQETQKIKALDSGADDYLTKPFGIGELLARMRTAMRHAHR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +      A  G +RV    R      +   L   E ++L  ++ + GK +    +   ++
Sbjct: 126 VGPEATTATIGALRVDLAARLVYRSDKEVHLTPLEYKLLVTMIKHAGKVLTHRFLLREVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   E + +   I+ +R+KL +       + +++ +GY +
Sbjct: 186 GPQDSQ-ENHYLRVFIASMRRKLEDDPARPRYILTEQGVGYRL 227


>gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWML--PGGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVDEVIEMRGLSLDPSSHRVTTDEYALDMGPTEFKLLHFFMTHSERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L      D+  ++  L    G  V
Sbjct: 5   ILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVDGFTV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 65  CQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +V  L R E  +L  L+   G+ VA ++I 
Sbjct: 125 RIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231


>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QICQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +           + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R KL +     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227


>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|320093788|ref|ZP_08025635.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979289|gb|EFW10785.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 238

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD  ++           G+S +          L  +   DV  ++  L   G   +E+ R
Sbjct: 16  DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGL--PGMDGVEVCR 73

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----- 120
            +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +     
Sbjct: 74  QLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTG 133

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +    R  E+      L R E  +L+ L  + G  + + Q+  A++G
Sbjct: 134 ATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   ++++V+ HI+ LRKKL +       V + R +GY +
Sbjct: 194 E-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           ++        DG  +           L  S   D+  ++  L   G   L++ R +R  S
Sbjct: 16  REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLML--PGMDGLQVCREVRRTS 73

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            VP+I ++        +   + G DD V KP   RE+  RV+ + +R +     A  G  
Sbjct: 74  TVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSRGPAAPAAPGSA 133

Query: 132 RV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            V          +  R     G+   L  RE  +L +L+A+ G+  ++T++   ++G   
Sbjct: 134 EVTSADGELSANALSRTARRGGDELALTSREFDLLHFLLAHPGQVFSRTELMEQVWGW-- 191

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              +++ V  H+ +LR+K+  +      + +   +GY +D
Sbjct: 192 SFGDQSTVTVHVRRLREKVEPDPTKPTRIVTVWGVGYRLD 231


>gi|187926390|ref|YP_001892735.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665877|ref|YP_002984236.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728144|gb|ACD29308.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867904|gb|ACS65564.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 219

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   +               E                 ++  ++  L   G+  
Sbjct: 1   MILIIEDEPKLAALMTDYLRAAHYETEWLADGTHAAQRIRETAPELVLLDLML--PGKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S+VP++ ++        L   + G DD V KP   RE+         R  
Sbjct: 59  LEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPREL-VARIKTILRRV 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + +      ++G+   L   E R+L  L    G+ ++++ +   IY  
Sbjct: 118 QRGGGVPESALHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDD 177

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  V++HI  LR+K+     G + + S   +GY +D
Sbjct: 178 H-RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218


>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 235

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D  + +   +G                 + + D+  ++  L   G    
Sbjct: 15  ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRL--PGMSGT 72

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ + +RA     P+I +S        +   + G DD V KP   RE+ AR+ A+  R  
Sbjct: 73  EICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRAS 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V  + R  + +GE   L   E  +L Y + N  + + +  I ++++G
Sbjct: 133 TDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVWG 192

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++       V++H+ KLR+KL           +   +GY  
Sbjct: 193 -YEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233


>gi|332088374|gb|EGI93492.1| transcriptional regulatory protein baeR [Shigella boydii 5216-82]
          Length = 240

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVCQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G ++E  +         ++   D+  ++  L       +
Sbjct: 5   ILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLML--PELSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++    +   +   DSG DD + K     E+LAR+  I +R   
Sbjct: 63  EVCRRVRKESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122

Query: 122 SNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +            D      +G+   L ++E  +L+YLM N+G  +++ +I   ++
Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NV + +I  LR K+  K     + + R +GY  
Sbjct: 183 G-YDYYGDTNVTDVYIKYLRNKIDQKFDVRFIHTVRGVGYIF 223


>gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 255

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 88/252 (34%), Gaps = 35/252 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +      +    L  + + D   ++  L       ++
Sbjct: 5   LIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLML--PKMDGMD 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------------- 105
           + + +R +    P++ ++        +   + G DD + KP                   
Sbjct: 63  VCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRRATY 122

Query: 106 --------------REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
                          +I     ++           + G I +  +     V+GE   +  
Sbjct: 123 SVSSVDAENGVEEKHKITLTKDSVGNFKDEDVEIIKAGDIEIHVNDYVVYVRGESIEMTP 182

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPV 210
           +E  +L Y+     + +++ Q+   ++  FD A E  +V+ H+S LR+K+  +    + +
Sbjct: 183 KEFELLTYMARRVNRTLSREQLLQKLW-RFDYAGETRIVDVHVSHLREKIELDTKNPEYI 241

Query: 211 DSKRFLGYSIDW 222
            + R  GY  + 
Sbjct: 242 ITVRGFGYKFEV 253


>gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268]
 gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +         G  +E     E           D+  ++  L   G    
Sbjct: 7   ILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLML--PGRDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R+   +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 65  SITQEVRSKKDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYTR 124

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE  P   RE  +L +L A+  +   K ++F
Sbjct: 125 LRDSGKEENEIIEIRGLKIDTTARRVFVNGEEVPFTSREFDLLAFLAAHPNRVYTKEELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
             I+   +   +   V  HI KLR+K+   N +    +++   +GY  
Sbjct: 185 QEIW-KMESIGDIATVTVHIKKLREKIEMENAVKPQYIETIWGVGYRF 231


>gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
 gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  ++          L  S    +  ++  L        
Sbjct: 4   ILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           EL   I+A  ++P+I ++     +  +  F+ G D+ + KP   RE    +  V      
Sbjct: 62  ELFEEIKARKELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTGI 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +    +   +++  +        E   L   E +IL     N+G+ + + QI S I+
Sbjct: 122 LEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
                 V  N +  +I +LR+K+         + + R +GY 
Sbjct: 182 DESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGYK 223


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046]
 gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
           519]
 gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G        G  ++             S   D+  ++  L        
Sbjct: 4   ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPI--IDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + +R  S VP+I +S      + +   + G DD + KP +  E+ ARV        +
Sbjct: 62  EVCKKVRETSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +   G I +    R      E   L  +E  +L  LM N  K  ++  +   ++
Sbjct: 122 SKKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +   V+ HI KLR+K+ +       + +K   GY  
Sbjct: 182 -KYEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYF 223


>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++ G       +G  +           +      D   ++           
Sbjct: 4   ILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVM--MPKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
              + IR    +P++ +S        L  F+ GVDD V KP   +E++            
Sbjct: 62  SACKEIRKTKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIISRNRQ 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +            + V   GR   V G+   L  +E  +L YL+ NR   +++ Q+  
Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G +D   ++  V++HI  LR  L      D + + R +GY  + 
Sbjct: 182 DVWG-YDFYGDDRTVDTHIKMLRSSLGKY--KDAIVTLRGVGYKFEV 225


>gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 235

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 84/222 (37%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD A + +        +G  +           +  +   ++  ++  +    G +  
Sbjct: 14  LVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGIEAG 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
              R I    Q  ++ ++      + +  FD G DD + KPI        +  +     +
Sbjct: 74  RQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRREAQ 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +           +   LP++E  +L +L  +  K  ++ ++   I+
Sbjct: 134 KADPGEQIQIADLLINRKNYSVSQNDKQVILPKKEFELLFFLAQHPNKVCSREELLQKIW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V E  V+ HI KLR+K+ +      + + + +GY  
Sbjct: 194 GA-DIYVLERTVDVHIRKLREKIGDT----HIRTLKGVGYMF 230


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGY 230


>gi|320532177|ref|ZP_08033046.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135603|gb|EFW27682.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 238

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD  ++           G+S +          L  +   DV  ++  L   G   +E+ R
Sbjct: 16  DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGL--PGMDGVEVCR 73

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----- 120
            +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +     
Sbjct: 74  QLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTG 133

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +    R  E+      L R E  +L+ L  + G  + + Q+  A++G
Sbjct: 134 ATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   ++++V+ HI+ LRKKL +       V + R +GY +
Sbjct: 194 E-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 227

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            ++   +          ++ D+  ++           
Sbjct: 6   ILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDI--KMPNLDGH 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119
              ++IR  S +P+I ++        +  F+ G DD + KP                   
Sbjct: 64  TTCKMIRNTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N       I +  +    +V+  V  L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 124 ENKNTSLNFEDISLDLNTYTLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +  +V++HI  +RKK+        + + + +GY+++ 
Sbjct: 184 -YDYYGDSRIVDAHIKNIRKKIGLP----YIKTVKGIGYTLEK 221


>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 234

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 9   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIML--PDVSGLT 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 67  ICQKIREKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 126

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 127 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 187 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 234


>gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 238

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 81/228 (35%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++G + +   +G  +           +   +  D++ ++      G    
Sbjct: 6   ILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIM--MPGCNGY 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
           ++ R +R     + +I ++        +   + G DD + KP    E        +    
Sbjct: 64  DVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSR 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +    GP  +        +    F L  RE ++LE    +  + + +  
Sbjct: 124 RTAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRNT 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +  +G+ D       ++ HI++LRKK+  +      + +   +GY 
Sbjct: 184 LLNLAWGI-DYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYR 230


>gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++  ++      L S    D+  ++  L   G   L
Sbjct: 3   ILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGML--PGIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +     G DD + KP    E++AR+  + RR   
Sbjct: 61  AVLAALRQTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSGP 120

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S  +A             +    R     G+   L  +E  +L  L+  +G+ + +T++ 
Sbjct: 121 SVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTELA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + +   E NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 SQVWDM-NFDSETNVVEVAIRRLRLKLDQPFEQHLLHTVRGMGYVLE 226


>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 232

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G      ++      L  +    +  ++          +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E    IR    +P+I +S        +    +G DD + KP +          ++   + 
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +      I +     + ++  +   L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  ++   +     N V  HI KLR+K+         + +   +GY ++ 
Sbjct: 184 YELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232


>gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 216

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 ETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 244

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         + G+ +    +             DV  ++  L   G   LE
Sbjct: 19  LLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLML--PGRDGLE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++        +   ++G DD + KP   R     I A+V      
Sbjct: 77  VCRELRTRSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRARGN 136

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S      G +++        + G+   L   E  +L  L    G+ +++ Q+   I 
Sbjct: 137 AGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDLIK 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  DE V +  ++ HI +LR+KL         + + R  GY +
Sbjct: 197 GSADE-VFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238


>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +    NS +           D+  ++  L        
Sbjct: 4   ILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGL--PDRDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           ++ + +R   +  P+I ++    L   +   ++G DD V KP         + AR+    
Sbjct: 62  QILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQT 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    N    T  + +    R+ +V      L  +E  +LE  + +  + +++ Q+   
Sbjct: 122 GKPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GSDRIETVRGMGYRL 220


>gi|229018483|ref|ZP_04175345.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024739|ref|ZP_04181178.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736582|gb|EEL87138.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228742835|gb|EEL92973.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++           
Sbjct: 6   ILLADDDKHIRELLHYHVQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIM--MPFIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +          +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIIKLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|225378583|ref|ZP_03755804.1| hypothetical protein ROSEINA2194_04251 [Roseburia inulinivorans DSM
           16841]
 gi|225209420|gb|EEG91774.1| hypothetical protein ROSEINA2194_04251 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             ++  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAAEAIRQREFNLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
 gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G         +      ++   D+  +   ++      L
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTN-PDIGLMILDVMMPNMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S+VP++ +S        +    +G DD V KP +  E++ARV ++ RR   
Sbjct: 62  EVVKIVRKDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRADN 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +              +            G++  L   E  IL  L ++  +  +   IF 
Sbjct: 122 AVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 225

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G  +              +   D+  ++  L   G    
Sbjct: 5   ILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGL--PGMDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ R +R A S +P+I ++   S+  T+     G DD + KP    E+    ++     R
Sbjct: 63  DVLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERAR 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +    R   + G    L  RE  + E  + + G+ +++ Q+   ++
Sbjct: 123 PAPDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVW 182

Query: 179 GLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G    A     NVV+ ++  LR+KL    G D + + R  GY ++
Sbjct: 183 GSEYSAAATSSNVVDVYVRYLRRKL----GPDWIATVRGAGYRLE 223


>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++    + +            +  ++          +
Sbjct: 5   ILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIM--MPIIDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I I+        +   +SG DD + KP    E++AR+ AI RR+  
Sbjct: 63  EVCKSIRFKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRITP 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N   T           +    ++ G    L ++E  +L  L ++  K V++  +  +I
Sbjct: 123 PENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLDSI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL     ++  + +   +GY  + 
Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLALNGQYNWDIKTIWGMGYKFEV 227


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++         G  +    S           R D+  ++  L        
Sbjct: 19  LLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVML--PDFDGF 76

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+     P++ ++   ++   +     G DD V KP    E++AR+ AI RR +
Sbjct: 77  AVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR 136

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     I +  D  +    G+   L   E ++L Y MAN G+ ++K QI   
Sbjct: 137 GGAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDH 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   +  +VES++S LR+K+ +      + + R +GY +
Sbjct: 197 VW-NYDFRGDAGIVESYVSALRRKV-DNTEPRLIHTLRGVGYVL 238


>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 21/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +       F  +G ++E  +              DV  ++  L   G   LE
Sbjct: 13  LVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVML--PGIDGLE 70

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R I+A      P++ ++        L     G DD + KP   RE+LARV A+ RR +
Sbjct: 71  VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130

Query: 121 VSNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             +  A                       R     G    L   E  +L  L ++    +
Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++   D +     V+SH+  LR+KL    G D + +   +GYS++
Sbjct: 191 TREQLLEEVWDWVDASG-TRTVDSHVKALRRKL----GADLIRTVHGVGYSLE 238


>gi|229819268|ref|YP_002880794.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565181|gb|ACQ79032.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++        DG  +E   +          +  D+  ++  L   G    
Sbjct: 4   ILLVEDEESYREPLGYQLERDGFDVEAVATGPEALDAFDRSGADLVLLDLML--PGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++   S    +   + G DD V KP  +RE+LARV A+ RR   
Sbjct: 62  EVCRELRRRGDVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSYRELLARVRAVLRRRGA 121

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +              G +R+ +D  +  V GE+ P+P RE  +LE  + N  + + + 
Sbjct: 122 GADGGGHLEDDDAVLVAGRVRMDTDRHEVRVDGELVPVPLREFELLEMFLRNPDRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   I+G  +   +   ++ H+ +LR K+         + + R LGY +
Sbjct: 182 QLIDRIWG-SNYVGDTKTLDVHVKRLRAKIEADPSIPQMLVTVRGLGYKL 230


>gi|251799424|ref|YP_003014155.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547050|gb|ACT04069.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++     +   +G  +           +   A  +++ I+           
Sbjct: 4   LLLADDDPNIRALVRFVMTREGYQVYEAQDGAEAVEVMQRAPINLAIIDVM--MPRIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I ++    L      +  G DD V KP    E+L RV A++RR   
Sbjct: 62  ELCEYIRERYDIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYNQ 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       I +     +      V  LP +E  +L  L    G+  ++ ++   ++  
Sbjct: 122 VSHDLIRMNRITIDRKNVEVTDGQSVLLLPMKEFELLAQLAQYPGRLFSREELIRLVW-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   ++  V+ HI +LR++  +      + + R +GY ++ 
Sbjct: 181 ADFEGDDRTVDVHIKRLRQRFADYAEDFTIQTVRGIGYKVEV 222


>gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +G   +    G ++    S      L  +   ++  ++  L       L
Sbjct: 4   ILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNNNFELILLDINL--PDRSGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL   IR  S VP+I I+   + Q  ++ F +G DD + KP     +  R+ A+  R   
Sbjct: 62  ELCNEIRKKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTGT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   +G I +  +            L   E ++L  L  N G+ + +  I   ++G 
Sbjct: 122 EDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +  V+EN V  ++ +LR+K+ +       + +   +GY
Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220


>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
 gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGATF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
            +  R      Q+P+I ++     Q  +   ++G DD V KP   +E+      + R  A
Sbjct: 65  AKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V                 +         L   E R+L +LM +  +  +++Q+ 
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGEDNAGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|315022466|gb|EFT35493.1| Phosphate regulon transcriptional regulatory protein phoB
           [Riemerella anatipestifer RA-YM]
 gi|325335426|gb|ADZ11700.1| Signal transduction response regulator, receiver region [Riemerella
           anatipestifer RA-GD]
          Length = 225

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD   + +        +G  +   N+              +  ++  +    G + 
Sbjct: 6   ILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDKDGIET 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYR 117
            +  R I       ++ +S      + L  + +G +D +    KP      +  +  + +
Sbjct: 66  CQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKVNALMNLTQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +++  N   + G + +  D        E F LP++E  +L  L +N  K   + +I   +
Sbjct: 126 QVEEKNKILKIGHLIIDRDNFKVTKGDESFILPKKEFDLLNLLASNTEKVFKREEILEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V E  ++ HI +LR+KL    GF  + + + +GY +
Sbjct: 186 WGN-DVVVGERTIDVHIRRLREKL----GFKSIQTLKGIGYKL 223


>gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++             DV  ++  L   G   +E
Sbjct: 2   LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGL--PGMDGIE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S+  ++ ++     +  L+    G DD + KP   RE++ARV A+ RR + +
Sbjct: 60  VCRRVRAFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 119

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  E   +     +        V G+V  L R E  +L  L     +  ++ Q+   ++
Sbjct: 120 VSAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +E +V+ HI  LR+KL        +D+ R +GY +
Sbjct: 180 D-PAWVGDERLVDVHIKNLRRKLDADPA-RYIDTVRGVGYRM 219


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++      +  S   DV  ++           
Sbjct: 5   ILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVM--MPQVDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E  R +R   S +P++ ++    ++  +   D+G DD + KP    E    +  +     
Sbjct: 63  EALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKT 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+R     + + +D R+    G+   L  +E  +L   M N  + +++  I   I
Sbjct: 123 GDDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGYIL 224


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+D  +     +G  +             ++ R     ++  L+      L 
Sbjct: 4   LVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLD--LLMPFMDGLT 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA     P++ ++   ++   +D  D+G DD + KP      +    A + R   
Sbjct: 62  MCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSYP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + V +             L R E  +LE L+ N G+ + +  +   ++G 
Sbjct: 122 GDDTVLRCADLAVDTGAHRVRRGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVWGQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D     N +E ++  LR+KL        V + R +GY +D 
Sbjct: 182 -DFGPSSNSLEVYVRYLRRKLEAGGEPRLVHTVRGVGYRLDE 222


>gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 240

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G+ +      +  + L      D+  ++      GE  L
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR +V
Sbjct: 66  TLCRELRAKSSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQV 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
               A     R     R                   L   E  +L   +    + +++ Q
Sbjct: 126 EPQPAAETLTRDLRFDRWLLDINRRELVDEEGVGLSLSTAEFDLLRVFLERPQRVLSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ +S+LR+KL  +    + + +    GY  
Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYLF 233


>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
 gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 93/220 (42%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +      +         +  +  ++  L G  G + 
Sbjct: 5   ILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLD-EKPKLILLDWMLPGRSGIQF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +     +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ A+ RR  
Sbjct: 64  IQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRRTY 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N+      + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G 
Sbjct: 124 QNNDVINIDDLILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  VE+  V+S+I +LRK L        V + R  GY  
Sbjct: 184 -DIYVEDRTVDSYIRRLRKSLEPCGFERYVQTVRGSGYRF 222


>gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 247

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G   +               + D+  ++  L   G    
Sbjct: 23  ILVVEDEPKMAALLIDYLHAAGYRADRLADGREVAAFVRGRQPDLVLLDIML--PGRDGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE------ILARVAAI 115
           E+ R +R  S VP+I ++        L   D G DD + K                  + 
Sbjct: 81  EVCRELRGFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILRRSR 140

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + + +       +G    L   E R+L  L A  G+ +++  + +
Sbjct: 141 RADASTAPEGKGAAALHIDAAAYRATFRGVALDLTPVEFRLLRSLAAVPGQVLSREVLLN 200

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++     AV +  V++HI  LR+KL     G +P+ +   +G+ ++
Sbjct: 201 KLHDDH-RAVTDRAVDAHIKNLRRKLEQVAPGCEPIRAVYGVGFRLE 246


>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 224

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +  +    + G  ++   +      L +  R D+  ++           
Sbjct: 3   ILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVM--MPEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + + + A    P++ +S   +L+  L   D G DD + KP    E+    R+     + 
Sbjct: 61  SVMKKLGARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R E G + +    R  E  G    L  +E  +L + + ++G+ +++  I S ++ 
Sbjct: 121 QKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIASRVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  + +LR+K+        + +   +GY  +
Sbjct: 181 M-NFDSDSNVVDVAVRRLRQKIDEPFEVRLIHTVHGVGYRCE 221


>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWML--PGTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R  R      +VP+I ++        +   ++GVDD V KP   RE+    R     
Sbjct: 63  ELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +     G +R+               +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SREDDEDGSVAAGNLRIDGAAHRVFAGDAPVAIGPTEYRLLHFFMTHPDRVYSRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LR+ L        V + R  GY  
Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRRTLEPFGADGMVQTVRGAGYRF 225


>gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++    +   +G         +      S    D+  ++  +  G G ++
Sbjct: 5   ILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGSGLQI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++ARV A+ RR+ 
Sbjct: 65  IKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLRRIS 124

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +         Q +V  +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMMIENLIEMDGLILDITSHRVTSQDQVLDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKVLEVGGHDKMVQTVRGTGYRF 225


>gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 227

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++      F  +   +    S E         + D++ ++  L   G    
Sbjct: 3   ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVML--PGMNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           E+ + +R    ++ +I ++        +     G DD V KP +  EI  RV A+ R   
Sbjct: 61  EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +++  E    ++    +    +     +  +E  +++  M N GK   + ++ +
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224


>gi|239943288|ref|ZP_04695225.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989746|ref|ZP_04710410.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446760|ref|ZP_06586150.1| response regulator protein [Streptomyces roseosporus NRRL 15998]
 gi|291349707|gb|EFE76611.1| response regulator protein [Streptomyces roseosporus NRRL 15998]
          Length = 233

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59
           +LI+D   V+DG   +    G  +E   + E    L +     R +++ ++  L   G  
Sbjct: 5   LLIEDDTSVRDGMELVLRRHGYGVETAATGEEALALLAGERGARVELAVLDLML--PGMD 62

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E+ R IRA +   P+I ++     +  +   ++G DD V KP+    + AR+ A  RR
Sbjct: 63  GFEVCRRIRARTAALPVIMLTARGDDRDIVAGLEAGADDYVVKPVTAPVLEARIRAALRR 122

Query: 119 LKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + S  +     +           G      G   PLP  E R+L  L A+ G+   + Q
Sbjct: 123 AEPSLRQRADADVTDLAGLVIDRAGLTVTRNGTPVPLPPTELRLLLELSASPGRVFTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + ++++       +  +V++ + +LR K+         V + R  GY  
Sbjct: 183 LLASVWD-HTFLGDSRLVDAAVGRLRAKIEEVPGRPRYVQTVRGFGYRF 230


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      +S   D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        ++G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|225408012|ref|ZP_03761201.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
           DSM 15981]
 gi|225042445|gb|EEG52691.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D    +   DG   +                  D   ++  L       
Sbjct: 5   ILLVDDEKDILDLLEEVLRRDGFREIRRAKDGAGAIRACREFLPDAVVLDIML--PDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S   ++ +S        +     G DD + KP   RE++ RV A  RR +
Sbjct: 63  LEVCKQIREFSYCSILFLSSKNDDIDKILGLSCGGDDYITKPFSPREVVFRVKAQLRRQQ 122

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          GPI V  +       G    L  RE  +L  L+ +  K ++K ++
Sbjct: 123 YQGAGPAAAGTLLTAGPISVDRESGRAYKDGRELSLTGREFLLLACLVEHADKIISKERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  ++G +  A+ +N +  HI  LR+K+ +       + + + LGY +
Sbjct: 183 YEQVWGAY-SAICDNTIMVHIRHLREKIEDSPSSPRQLVTVKGLGYKL 229


>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 249

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHTEILNYGPLTLIPERFETIWFNQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V         ++  +++     E   +L  +   D+  ++  L    +  LE
Sbjct: 4   LVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLML--PKKDGLE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++   +++  +   DSG DD + KP    E+LARV A+ RR   
Sbjct: 62  VIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSAK 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      R+           +   L  +E  +LEY M N  + + +  I   ++  
Sbjct: 122 DRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKVDRDFDKKLIHTVRGVGYVL 220


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G ++           +      ++  ++          LE
Sbjct: 4   LVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVM--MPRMDGLE 61

Query: 63  LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
           + R +R+      I  ++   ++   +   D+G DD + KP                + V
Sbjct: 62  VCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSAV 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +              G + +  + RD         L R E  +LE LM N  K + +  
Sbjct: 122 ESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRNT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 182 ILEEVWG-YDFPTSGNALEVYIGYLRRKTEQEGESRVIYTVRGVGYVL 228


>gi|255281191|ref|ZP_05345746.1| phosphate regulon transcriptional regulatory protein Phob
           [Bryantella formatexigens DSM 14469]
 gi|255268148|gb|EET61353.1| phosphate regulon transcriptional regulatory protein Phob
           [Bryantella formatexigens DSM 14469]
          Length = 230

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+    G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223


>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +                 D+  ++  L   G    
Sbjct: 5   ILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIML--PGMNGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+   +R   S+ P+I ++   + +  +     G DD + KP                  
Sbjct: 63  EVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRTG 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +     G + ++ +  +  +  +  PL  +E  +L YL+   G  V +
Sbjct: 123 NKEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 183 DDLMNVVWG-FDYIGGQRTVDVHVSSLRKKLEMNQQSVQIESIRGVGYKL 231


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D A +           G  ++            + A  D+  ++  L    G +V 
Sbjct: 10  LVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPTMSGIEVC 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
              R   +   +P+I ++     Q T+   ++G DD + KP     ++AR+ A       
Sbjct: 70  RQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRSGT 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +          G V  L   E R+LE+ M +  +  ++  + +A++G
Sbjct: 130 APARAPLVFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLNAVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK +  +   D V + R  GY++D
Sbjct: 190 R-DIHVEPRTVDVHIRRLRKSINAETDIDLVRTVRAAGYALD 230


>gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
 gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++       + G  +E     +    L +S + DV  ++  L G G + L 
Sbjct: 4   LLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPG-GVEGLH 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           + + +   ++  P++ +S    +   +    +G DD V KP    E+ AR+       R 
Sbjct: 63  ILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRNRN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R+    G+   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 123 EAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        V + R  GY +
Sbjct: 183 D-YHFDPQTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223


>gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +         +    DV  ++  L   G     
Sbjct: 4   LVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIML--PGLNGYR 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R A S   ++ ++         +  D+G DD ++KP     ++AR+ A+ RR+  
Sbjct: 62  VCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIGS 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R        V S  R     G    L  RE  +L++L    G+ V+K +I   ++  
Sbjct: 122 RAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                + N VE HIS LR+K+    G   + + R  GY ++
Sbjct: 182 A-ADSDPNTVEVHISALRRKIDTPFGRSALQTVRGAGYRLE 221


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    +         +A  DV  ++           
Sbjct: 5   ILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVM--MPQVDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R +R   S VP++ ++    ++  +   D G DD + KP         + A +    
Sbjct: 63  EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   + NR     +++ ++ R+    G+   L  +E  +L   M N  + +++  I   
Sbjct: 123 EQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYIL 225


>gi|291521396|emb|CBK79689.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 230

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL ++I   H    +I ++        +  ++ G  D + KP   R +  ++ A++  L+
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIRALQRKIKAMFAMLE 121

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + ++ V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDEKYVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
 gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGISGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 227


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A +          +G ++   N+        S    D   ++  L        
Sbjct: 7   ILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGL--PDLNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-------------IHHREI 108
           E+ + +R  SQ PL+ ++        +   + G DD   KP                 E+
Sbjct: 65  EVCKQLRQKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEV 124

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             +  +    +  +   A +            +  G+   L R E R+L  L+ +  +  
Sbjct: 125 QIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ Q+   I+   + ++E   V++HI  LR+KL+      DP+ + R  GYS+
Sbjct: 185 SRQQLMDHIWEHPEHSLE-RTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S+VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESEVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V  N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++        + +    +      ++  ++          +
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIM--MPQIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I IS        +    +G DD + KP +  E++ARV +  RR + 
Sbjct: 63  EACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +    +        + +D R   V  +   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIRKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +    +N V  HI+ LR+K+  +      + +   +GY I
Sbjct: 183 EEVW-KEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++        + +    +      ++  ++          +
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIM--MPQIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I IS        +    +G DD + KP +  E++ARV +  RR + 
Sbjct: 63  EACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +    +        + +D R   V      L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIRKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +    +N V  HI+ LR+K+  +      + +   +GY I
Sbjct: 183 EEVW-KEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228


>gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39]
 gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI39]
          Length = 223

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHYT 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++  +         S    D+  ++  L   G   L
Sbjct: 5   LLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLML--PGMNGL 62

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           ++  R+       P+I ++        +    SG DD + KP                 +
Sbjct: 63  DILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTS 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +++ + G + ++ +  +  + G+   L  +E  +L YL    G  + +
Sbjct: 123 GGDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +A++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPDSVHIDSIRGVGYKLVVN 234


>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    +      L      D+  ++           
Sbjct: 4   ILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVM--MPRLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I     +P+I +S        L  F+ GVDD V KP   +E++ARV  + +R   
Sbjct: 62  SACKEIHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSAR 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + A+              GR+  V GE   +  +E  +L YL+ N+   + + ++   
Sbjct: 122 QESDAQLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  V++HI  LR  L        + + R +GY  +
Sbjct: 182 VWG-YDFFGDDRTVDTHIKMLRNSLGEY--RKFIVTLRGMGYKFE 223


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 226

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V+   +    + G  ++  ++ +   +L  S   DV  ++  L G G   L
Sbjct: 3   ILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPG-GIDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            +   +R   +  P++ +S    +   +    +G DD + KP    E    +  +    R
Sbjct: 62  RILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRGR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R   G + +    R  +  GE   L  RE R+LE+L+ + G+ V +T +   +
Sbjct: 122 PESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDKPMIHTIRNAGYIL 223


>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G         E    L S    D   ++       +    
Sbjct: 7   LIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVM--MPKQDGFA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           +   IR  S VP++ ++        +     G DD + KP    E++AR+       +R+
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++ R + G + +   GR   V GE   L  +E  +L +L  +RG+  ++  +   ++G
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKD--AARHIQTVWGIGYKFE 223


>gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
 gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
          Length = 231

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R   
Sbjct: 61  QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +              ++    R      +   L  +E  +LE LM  +G+ +++T I 
Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + +   + NV++  + +LR K+      + + + R +GY ++
Sbjct: 181 SLVWDM-NFDSDTNVIDVAVKRLRSKIDRPFEKELIHTIRGMGYKLE 226


>gi|313885774|ref|ZP_07819521.1| putative sensory transduction protein RegX3 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619001|gb|EFR30443.1| putative sensory transduction protein RegX3 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 216

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      +   S+             ++   D+  I   +       +
Sbjct: 3   ILIVEDDQMIREGVSEYLKEYNYSVIEAKDGAEALSKFNA---DIDLIILDIQLPIINGI 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P+I ++ +      +D F +  D  + KP     +  R+  + ++   
Sbjct: 60  DVLKEIRKKSDLPVIMLTAFGDEDYKIDAFTNFADGYIQKPFSLPVLKVRIETLLKKYYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + ++     + V       +++GE+     +E  +L+YL +N G+ V ++QI   ++   
Sbjct: 120 TTDQFVYKDVEVNFLNYTAKLKGEIVDSKVKELEVLKYLSSNEGRVVTRSQILDNVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 DEIPFDRVIDVYIKELRKKLQL----DCIVTVRNVGYKLE 215


>gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 235

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +E                  +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G     G +G ++      E    L  + + D+  ++  L       L
Sbjct: 5   ILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVML--PRMGGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    ++P++ +S        +     G DD + KP   +E+LAR+ A+ RR +
Sbjct: 63  EVVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122

Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +   IR         D R   V G    L  RE  +L + + +  +  ++ Q+ 
Sbjct: 123 ARGEGVQPKAIRRAGGIELDLDARRALVDGRALDLTSREFDLLAFFVTHPDRVYSREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            A++G          V++ +++LR  + +       +++ R +GY  + 
Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230


>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D A +           G ++  F +             ++  ++  +   G   LE+
Sbjct: 7   VVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMV--PGADGLEI 64

Query: 64  PRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R IR        P+I ++   S    +   D G DD + KP   RE++AR+ A+ RR +
Sbjct: 65  CRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRFE 124

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                A      I + +      V+G +      E R+LEYL  + G+   + Q+  A++
Sbjct: 125 RPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
                 V    V+ ++ ++R+K+         + + R  GY  + 
Sbjct: 185 RETHY-VTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +      S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +       + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231


>gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           2457T]
 gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           301]
 gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073]
 gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82]
 gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
 gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218]
 gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272]
 gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 223

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649]
 gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649]
          Length = 231

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  ++  +     +WL +    DV  ++  L   G    +
Sbjct: 4   LLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIML--PGRNGYD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++         D F+ G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGAP 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + +  + R     G    L  +E  +L++LM +    ++K +I   ++  
Sbjct: 122 ARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +N+VE ++  LR+K+    G   +++ R +GY +
Sbjct: 182 A-FDGSDNIVEVYVGYLRRKIDQAFGVTSLETVRGMGYRL 220


>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 229

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++ DD   +     +     G  +      E    L  + R D+  ++  L    G  +
Sbjct: 4   ILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDGYSI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++  R       +P+I ++        +   + G DD + KP + RE++ARV        
Sbjct: 64  VQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLRRGA 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R   G I +  D     + G    L   E  +L   M N G    + ++    
Sbjct: 124 GPPQPPQRLSYGAISLDLDAHRATIAGAPLELTPSEFDLLALFMRNPGHAFTRLELIEQG 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G +  A  E  V+SHI  LRKK+  +      +++   +GY +
Sbjct: 184 LG-YAYAGMERTVDSHIKNLRKKIERDPQAAPLIETVYGVGYRL 226


>gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 242

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G+     +S      + +    D+  I+      G    
Sbjct: 13  ILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIM--MPGMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R  +  P++ ++        +     G DD + KP   RE++AR+ A  R    
Sbjct: 71  ELCANLRQVTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLRTPSA 130

Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +           +  + G    L  +E  +L +L    G+ V+   ++   
Sbjct: 131 GAFEPSDVVVTRDFDINRRTHEAMLHGCRLDLTPKEFAVLLHLAERAGEPVSARDLYERA 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G   +A   N V  HI  LRKK  +       +D+   +GY +
Sbjct: 191 WGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYRL 234


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHPSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            V +D R   V+G+   L  +E  ILE L+ N+G  ++  +I+
Sbjct: 123 YNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228


>gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 226

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        GD G +++     E  ++L  +   D   ++  L       +
Sbjct: 3   ILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGL--PKVDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    R  +   P++ ++   S    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G +R+        V GE   L   E R+L Y+M ++G+ + +T++   +Y 
Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKL----GAERIETVRGLGYRL 216


>gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 229

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + V         +   +++     E   +  +    D+  ++  L  K     
Sbjct: 3   ILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLK--NGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++   S+   +   DSG DD + KP   +E+LAR+ A+ RR  
Sbjct: 61  AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                A       V +     E  G +  L  +E  +LE+LM N+ + V +  I   ++ 
Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NV++ +I +LR KL        + ++R  GY +
Sbjct: 180 EETFDAFTNVIDVYIKRLRAKLDGPGSPRLIHTRRGEGYIL 220


>gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 245

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHTEILNYGPLTLVPERFEAIWFDKTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPKYIKTVYGAGYCLE 230


>gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 23/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +  ++G S+    S E    L S   R ++  ++          
Sbjct: 5   ILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIM--MPNMSG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR    +P++ +S        +  F+ G DD + KP    E+LAR+ A  RR +
Sbjct: 63  YELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYE 122

Query: 121 VSNNRAETGPIR----------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                 E  P +                +  +     V  +   L  +E ++L +L  N 
Sbjct: 123 RIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAENA 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G    + QI+  ++G        N V  HI  LR+KL        + ++   GY  
Sbjct: 183 GIVFTREQIYDRVWGYG--YGSLNTVTVHIKNLREKLE--TERQFIKTQWGTGYVF 234


>gi|153003748|ref|YP_001378073.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027321|gb|ABS25089.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 234

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D         G+++              S R +   ++  L   G+  LE
Sbjct: 10  LLVEDDRRLADLTREYLEGHGLAVVHVADGRRGLEEALSGRYEAVLLDLML--PGKDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I ++        +   + G DD + KP   RE+LAR+ AI RR +  
Sbjct: 68  VCRELRARSDVPVIVLTARGEEADRVLGLELGADDYLAKPFSPRELLARIRAIVRRARGR 127

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +        V    R   + G    L   E  +L+ L    G+ +++ Q+     
Sbjct: 128 AGPAASTLRVGGLVVDPGARRVTLDGREIALTGYEFALLDALARRAGRVLSREQLMELAG 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  +EA +   ++ H+S+LR+KL +       + + R  GY +
Sbjct: 188 GSAEEAFD-RSIDVHVSRLRQKLGDDPKRPRLIKTVRGAGYLL 229


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D A + +  +  F  +   +      E    L      D+  ++  + G  G +V 
Sbjct: 7   LLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGISGIEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R     + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++ 
Sbjct: 67  RRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          I + + G      GEV  L   E R+L++ + + G   ++ ++  A++G
Sbjct: 127 ALAGEALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDAVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  +E   V+ HI +LRK +      D + + R  GYS+D
Sbjct: 187 -HDSDIESRTVDVHIRRLRKAINIGDRPDIIRTVRSAGYSLD 227


>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F   G  +   ++       QSS   D+  ++      G    
Sbjct: 5   ILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALD-QSSHNPDLILLDVN--MPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR H   P++ ++     Q  +     G DD + KP    E+ ARV A  RR + 
Sbjct: 62  EVCRMIRDHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRREER 121

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +    R     G    L + E  I+E L  + G+   + Q++  + 
Sbjct: 122 RSQSQAVKIQGSLAIHYTERSVYYDGRALNLTKTEFNIVELLSMHSGQVFTREQVYDRVR 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   + ++V  HI ++R K+        +++   +GY 
Sbjct: 182 G-YDGDGDSSIVTEHIRRIRAKMSAVSEKQYIETVWGVGYK 221


>gi|291458739|ref|ZP_06598129.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418656|gb|EFE92375.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 247

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + ++ +   S              +  ++      G    
Sbjct: 21  ILVIDDDRELCTLIRRTVSQEDIAADCCYSGRAGLEKLKENEYQLVILDVM--MPGFDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E    IR  S VP++  +      + +    +G DD + KP    E+      L R    
Sbjct: 79  ETLAQIRKESGVPVLMFTAKNDSSSKVRGLRNGADDYLTKPFVMEELLARIVSLIRRYTR 138

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +              + +  D R    +   F L  +E  +L +   N+G+ + K QI+ 
Sbjct: 139 FNPNGSDAKTLSYDGLMIDLDARSVTTENGTFELLPKEFDVLLHCAKNQGRILTKRQIYE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N++   IS+LRKKL  +      + + + +GY  + 
Sbjct: 199 EVWGEAYVYGDSNIMAV-ISRLRKKLEADPKNPKYIQTVKGVGYRFNK 245


>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +     A    +G  +   +       L      D+  ++  L        E
Sbjct: 11  LIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLML--PNMSGEE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR   + P++ ++   S    +     G DD V KP   REI+AR+  I RR+   
Sbjct: 69  IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R +        I + +  +   ++G    L + E  IL  L     K  ++  +   I
Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           YG +    +   +++HI  LR+K+         + +    GY  
Sbjct: 189 YG-YLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231


>gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 227

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++D    +    G      ++ +           D+  ++     G G K+
Sbjct: 5   ILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGSGIKL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   +       +P++ ++     Q  +   ++G DD V KP   +E++AR+  + RR+ 
Sbjct: 65  LSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRRVN 124

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++   E     +++        +  E   +   E  +L + M +  +  ++ Q+ + ++
Sbjct: 125 PTSLDDELSFNKLKLDPVSHRVSLADEALNMGPTEFNLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALADHDH--LIQTVRGAGYRF 223


>gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 236

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +                  D++ ++          +
Sbjct: 6   ILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 64  TMTAKLREKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYHR 123

Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G + V  +  +  V  +   +   E +IL  L+ N G+    
Sbjct: 124 FLDRLSSKQAEDPRIHRLGGLEVNEETVEVMVDDKPVKVTPIEFKILLLLIQNPGRVFPA 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +I+  ++   + A+  + V  HI  LR+K+  N      V     +GY I+ 
Sbjct: 184 EEIYERVWN--ERAINTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEK 234


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L        
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+ R ++      ++ ++   S+   +   D G D+ + KP              R   I
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     +    +++    R      EV PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G+ +      +  + L      D+  ++      GE  L
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR + 
Sbjct: 66  TLCRELRVKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
               A     R     R                   L   E  +L+  +    + +++ Q
Sbjct: 126 ETQPAAETLTRDLRFDRWLLDVNRRELVDEDGVGLSLSTAEFDLLKVFLERPQRVLSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ +S+LR+KL  +    + + +    GY  
Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYMF 233


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     + +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLML--PGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRSLRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEG 122

Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              AE G       P+R+  D     V G   PLP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 GAEAEGGGGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  D
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEVDPSVPRHLITVRGLGYKFD 228


>gi|292488737|ref|YP_003531624.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|292899893|ref|YP_003539262.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199741|emb|CBJ46861.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291554171|emb|CBA21385.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
          Length = 235

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I                +           D+  ++  L       
Sbjct: 9   LILIVEDEPKLGQLMIDYLQAANYRTHHLLRGDEVVDWVKQHAPDMVLLDLMLPA--MDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S++P++ ++        L   + G DD + KP   RE++ARV  I +R +
Sbjct: 67  LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRCR 126

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T     +           +   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RVTEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWE 228


>gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +  ++   NS         +   D+  ++  L       L
Sbjct: 3   ILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIML--PDASGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + ++    ++P+I ++   S    +   + G DD + KP + R ++AR+ A+ RR +
Sbjct: 61  DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            I +  +       G+   LPR+E  +L+ ++ N GK   + +I   +
Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D   +   V+ HISKLR+K+    G + + + R +GY +
Sbjct: 181 WGM-DFFGDFRTVDVHISKLREKI----GSEFIKTVRGVGYKL 218


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEMRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|308069099|ref|YP_003870704.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858378|gb|ADM70166.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G      ++ +    +    + D+  ++  L        
Sbjct: 4   ILIVEDDPQISSLLQSYLEKYGYQGINVSNFDQVLAIFQEVKPDLVLLDVNL--PRFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR  S  P++ +S        +    +G DD + KP +   +        R A  
Sbjct: 62  YWCRQIRTQSTCPILFVSARDDKMDQVIALQNGADDYITKPFYPEVLLAKVESNLRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   +   +   + ++ D  +     +   + ++E  +LE LM    + V +  +  
Sbjct: 122 SYAVAPKSRSLKVADLTLYPDIMELVFYDKQVEISQKEAALLELLMTYPKQVVGRVHLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++      V EN +  +++++RKKL      D +++ R  GY +
Sbjct: 182 ALWDDHQY-VGENTLNVYVTRVRKKLSELGLGDIIETVRGAGYRL 225


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +          +  ++      E           D+  ++       +   +
Sbjct: 5   LIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVM--MPKKDGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR+   
Sbjct: 63  VCRQVRTFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITPK 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+          + +  +    ++  E+  L ++E  IL  L  N+ K   +  +   I+
Sbjct: 123 NDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G FD   E   V++HI +LR KL N       + +   +GY  D
Sbjct: 183 G-FDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGYKFD 225


>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    +D      G +G  +    +        +    D+  ++  L   G    
Sbjct: 4   ILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLML--PGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRRLRLDSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRRDT 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S   A+             R+  D     V GE+ P P +E  +LE L+ N  + + + Q
Sbjct: 122 SARPADDPEDDGVLEVGAVRMDVDRHTVHVHGELVPFPLKEFELLELLLRNPDRVLTRGQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+  +      + + R LGY +
Sbjct: 182 LIDRVWG-SDYVGDTKTLDVHVKRIRAKIERDPSAPTLLTTVRGLGYKL 229


>gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
 gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
          Length = 231

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIML--PDASGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKHTYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N         +            +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVMAQNKNVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGIGYKIEK 231


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   ++           R D   ++      G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           L R +RA     P + ++   SLQ  +     G DD V KP        R  +    +  
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                 SA  D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLML--PGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++        +   +SG DD V KP + +E++ARV    R    
Sbjct: 63  EICARIREESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPASD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T     +   G +         L   E  +L  L     +   +  +   ++G 
Sbjct: 123 AATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YHYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGYR 221


>gi|330958496|gb|EGH58756.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S     +         ++   +  ++  L   G   +
Sbjct: 9   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRTSAPQLILLDIML--PGRDGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I I+        L   D G DD + KP   RE +        R   
Sbjct: 67  DICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +      ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 126 AADPQAAKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 185

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 186 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 225


>gi|324998685|ref|ZP_08119797.1| putative OmpR family two-component response regulator
           [Pseudonocardia sp. P1]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +E  +          S R DV  ++  L   G    
Sbjct: 3   LLLVEDEKPLAELVRRGLAAEGHEIELAHDGNTGLQYALSGRHDVIVLDIML--PGLSGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++         D FD G DD + KP     +LAR+ A+ RR  
Sbjct: 61  RILQHLRDRGVWTPVLMLTAKDGEYDEADAFDLGADDYLTKPFSFVVLLARLRALLRRAG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S           +               L  RE  +LE+LMA+ G+ V KT I  +++ 
Sbjct: 121 ESAPTVLRVGDLSLDPATHRVHRGDVEISLTPREFGVLEHLMAHPGQVVTKTDILRSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 E NVVE ++  LR+K+    G   +++ R +GY +
Sbjct: 181 AH-YDGEVNVVEVYVGYLRRKIDAPFGTHSIETLRGVGYRM 220


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +  + +   +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 244

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 8/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        DG  +E               R     ++  L   G   +E
Sbjct: 28  LVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGL--SGMDGIE 85

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R +RA     P++ ++        L   + G DD + KP   RE+ ARV  +  R   
Sbjct: 86  ICRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRASG 145

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +R+   GR          L   E  +L YL+ + G+ +++ Q+ SA++G 
Sbjct: 146 SPATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVWG- 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  A     V+ H+++LR KL +     P+ + R +GY
Sbjct: 205 YAAAAGTRTVDVHVAQLRAKLGDDS---PIRTVRGIGY 239


>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
 gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
          Length = 239

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F  +G  +    + +    + +     +  ++          +
Sbjct: 11  ILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVM--MPVMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  S +P+I ++        +     G DD V KP +  E++AR  +  RR   
Sbjct: 69  QTVRKLREDSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRRYVR 128

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +A     +V          + ++ +V GE   L  +E  IL+ LM  +G+  +   I
Sbjct: 129 FGGQAGKPADKVLTLDGLVLDDNAKEVQVDGEKVDLTPKEFEILKMLMLEKGRVFSPETI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++G  +    E+ V  HI  LR+K+  N      +      GY +D 
Sbjct: 189 YRKVWGE-EPYGSESTVAVHIRHLREKIEINPSEPRFIKVVWGQGYKVDK 237


>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  F       +  +      V  L   E  +L  L+   G+ V+ + I 
Sbjct: 124 RIPQAAKHSEILSFGPLTLVPERFEAVWFEGVVKLTHLEFELLHCLLQRHGQTVSPSDIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKRLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G ++   +  E           D+  ++  L   G    
Sbjct: 4   ILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVML--PGVSGF 61

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
           E+   +R     P +  ++        +   + G DD + KP   RE+ ARV        
Sbjct: 62  EIVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRRGV 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +    R   V G    L  RE  +L  L  + G+   + ++   
Sbjct: 122 GPEPKPAGPLVFGALEIDPAARRVRVDGRTVNLTAREFDLLYELARHPGRVYTRAELLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G    +  E+ V SHI++LR K+  +      V++   +GY  
Sbjct: 182 VWGAG-FSGYEHTVNSHINRLRAKIEPDAKRPVYVETVWGVGYRF 225


>gi|325679575|ref|ZP_08159151.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108732|gb|EGC02972.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 240

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 82/231 (35%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G S+             +     +  I+          L
Sbjct: 8   ILVVDDDRDIVAAIAKLLELEGYSVVKAYDGIDALEKLAENDIQLILIDVM--MPRMDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD + KP +  E+ ARV +  RR   
Sbjct: 66  SAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVRSSLRRYMQ 125

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +        V            +   V GE   L   E +ILE LM N G+  +   I
Sbjct: 126 LGDIGSINKTDVIKIGGLELDKSAKQLTVDGEPVRLTATELKILELLMENAGRVFSAEDI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++     AVE N V  HI  +R+K+  +      +     +GY I+ N
Sbjct: 186 YRRVWNEDAYAVE-NTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235


>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
 gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++    +    +G  +      +           DV  +   ++   +   
Sbjct: 5   ILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNE-DVVLVMLDVMMPKKDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S VP++ ++   S Q  +  F +G D+ + KP     ++ RV  + RR   
Sbjct: 64  DACREIRGKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRRTSS 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++    + G ++V    R   V G+      +E  +L YL+ N    + + QI   ++ +
Sbjct: 124 NDMSDVSAGGVKVLYRERTVTVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQIICTVWDM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D A ++  V++HI  LR KL        + + R +GY  +W
Sbjct: 184 -DYAGDDRTVDTHIKCLRAKLGPY--AKCIVTVRKVGYKFEW 222


>gi|313114104|ref|ZP_07799656.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623513|gb|EFQ06916.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++         G  +  F S E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDAAIRELEQYALQSSGYEVTSFESSESFWQAMHAAEPELVILDVML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115
             + + +R      ++P+I ++   S   T+   D G DD ++KP    E L+RV A   
Sbjct: 59  FSILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYISKPFGIMEFLSRVRAALR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N      I + +   +  V G    L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEARPNVLSFHEILLDNARHNVTVSGTPVELTYKEYSLLRLLLENTNLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--KYICTVRKVGYKL 220


>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9313]
          Length = 245

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGE 58
            ++++D   +++        +G              + +S    + D+  ++  L   G 
Sbjct: 19  LLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVML--PGI 76

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLD------FFDSGVDDVVNKPIHHREILARV 112
             L++ R +R       I +      +            D  V     + +  R      
Sbjct: 77  GGLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLR 136

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               R    +    E G + ++ +       G+   L  +E +IL+ L+ +  + +++ Q
Sbjct: 137 RYQERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQ 196

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I   I+G  D   +   V+ HI  +R+K+  +      + + R  GY  
Sbjct: 197 ILERIWG-DDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFGYRF 244


>gi|21220620|ref|NP_626399.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788240|ref|ZP_05526671.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289772132|ref|ZP_06531510.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|4539212|emb|CAB39870.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702331|gb|EFD69760.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +       +       +   D+  ++  L   G    
Sbjct: 4   ILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGL--PGRDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P+I ++   S++ T+   + G DD + KP    E+LARV    R   
Sbjct: 62  TVLRELREARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +    R    +G    L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LRKKL    G   V++ R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GARQVETVRGMGYRL 218


>gi|327440492|dbj|BAK16857.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         + G  +           + +    D++ ++           
Sbjct: 4   ILIVDDDINILQLVNIHLSEAGFKVFQAKDGTEALGILNREVCDLAVVDVM--MPFMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+IR    +P+I ++    ++     + SG DD + KP   +E+  R+ A+ RR   
Sbjct: 62  ALTRVIRKKYDIPVILLTAKNQIEDKEIGYKSGTDDYLVKPFEPKELNFRIEALLRRYDK 121

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ +        +     + ++      LP +E  +L +L  N  +  ++  +   I+G
Sbjct: 122 QSDESIIRLGSTTINKKSYEVQIGDRTILLPLKEFELLYFLALNPMQVFSRDHLIEHIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   +E  V+ H+ +LR++         + + R +GYS++
Sbjct: 182 V-DYEGDERTVDVHVKRLRERFSKLTDDFHIKTVRGVGYSLE 222


>gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +++DD   + +         G                   R D+  ++  +  K G   
Sbjct: 10  ILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKAKVFRPDLIMLDIMMPNKNGIDT 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
               R +       ++ ++     ++ +D  + G DD + KPI  + +++R+ A   R  
Sbjct: 70  CREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRRLH 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  + + + G + +  +      +G+   L ++E  +L+ L +  G+   + +I + ++G
Sbjct: 130 KPEDTQVQLGDLIIDREKFTVTYKGQEIILAKKEFELLQLLASKPGRVFLRNEILNQVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  V +  ++ HI K+R+K+    G D + + + +GY  +
Sbjct: 190 T-EVIVGDRTIDVHIRKIRQKI----GIDLITTVKGVGYKFE 226


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGY 230


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +  + +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD A + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     E   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGNLTLVPERFEAIWFNETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L        
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+ R ++      ++ ++   S+   +   D G DD + KP              R   I
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     +    +++    R      EV PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus
           HTCC2559]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G ++   +  +    L    +  +  ++          +
Sbjct: 8   ILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVM--MPEMDGV 65

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E    IR        +   +      + L  FD+G DD + KPI  + ++++V A+ RR+
Sbjct: 66  EACEQIRKIPDLDTIITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRRI 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSA 176
              +       I      R+     +      LPR+E  +L  L +  GK   +  I   
Sbjct: 126 VEDSTNDNVVKIGDLIINREEYKILKGKEEILLPRKEFELLSLLASKPGKVFKREDILDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V    ++ HI KLR+KL +K       + + +GY  
Sbjct: 186 VWGN-EVVVGGRTIDVHIRKLREKLGDK----RFKTVKGVGYKF 224


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +    ++   + +    L      ++  ++  L       
Sbjct: 6   ILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIML--PDISG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
            EL   IR ++  P+I +S   +    L     G DD + KP +      R         
Sbjct: 64  FELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G    + +     VQ +      +E  +L +   N  +     Q++ 
Sbjct: 124 MYERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  D   EE  V  HISKLRKKL +       + + R +GY  
Sbjct: 184 RVWGN-DVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 228


>gi|291086887|ref|ZP_06344776.2| aspartate carbamoyltransferase [Clostridium sp. M62/1]
 gi|291077294|gb|EFE14658.1| aspartate carbamoyltransferase [Clostridium sp. M62/1]
          Length = 257

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V+   + +    G   +  +          S    +  ++  + G      
Sbjct: 30  ILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGND-DGF 88

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
              + +R      P++ +S       TL   D G DD V+KP +      +I A V    
Sbjct: 89  HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 148

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +      GP    +   +    G    L  RE  ++   +++ G+  +K Q++  
Sbjct: 149 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 208

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   + AV++NV+  +IS LR K+ +       + +   +GY+ 
Sbjct: 209 VWN--NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 251


>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G ++      +    +       +  ++          +
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIM--MPKMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R +R    +P++ +S        +    +G DD + KP +        + ++ R   
Sbjct: 63  EVCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYY 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  + G + +  +     V G    L  RE  IL  L  N+G+  +  +IF
Sbjct: 123 FSGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++         N V  H+S++R K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230


>gi|86739863|ref|YP_480263.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566725|gb|ABD10534.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 235

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 16/229 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A V++        +G  +           +    R D+  ++          LE  
Sbjct: 2   VDDDAAVRESLERSLRFEGYEVATAVDGADALDVIGRERPDIVVLDVM--MPRVDGLETC 59

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA     P++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  ++ 
Sbjct: 60  RRLRAQGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRAALAA 119

Query: 124 NRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +    R          L + E  +LE  +A+  + ++++
Sbjct: 120 RVRAAGSRGIPDSTLRYGGVCLDQVSRQVTRGDRELILTKTEFELLELFLAHPRQVLSRS 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   ++G +D     N +E  +S LR+KL        + + R +GY +
Sbjct: 180 MIMERVWG-YDFGPTSNSLEVFVSYLRRKLEANGEPRLLHTVRGVGYVL 227


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +         D+G  +      E    L  + + D+  ++      G   
Sbjct: 4   IILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLL-NRKPDLILLDIM--MPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR     P++ +S    ++  ++    G DD + KP    E++ARVAA  RR  
Sbjct: 61  IQVCRWIRDSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRREL 120

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S ++ +T        +     +      + P+  +E  ++ +L  + G+  ++ QI+  
Sbjct: 121 RSPDQEKTVLRFGRLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQVFSREQIYEG 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++G  +    +  V  HI K+R KL         + +   +GY  + 
Sbjct: 181 VWGFGE--GSDATVTEHIKKIRAKLGAVDPVTPYISTVWGIGYRWEK 225


>gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD++ V+        + G  +      +   ++      D+  ++           
Sbjct: 5   ILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIM--MPRMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +  R  R   Q P+I I+        +   D G DD + KP   RE    +  +      
Sbjct: 63  QFLRQFRQERQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRGEE 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G I +        V G+   L   E  +L  LM + G+   + ++   + 
Sbjct: 123 HPDKQEILRAGEIILDETTHTVTVSGKPVSLTPIEFDLLATLMRSPGRVYTRAELVEILA 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 ++   +  H+  LR K+  +      +++   +GY  
Sbjct: 183 DSGFAGIDT-TLNVHVRNLRLKIEPDPKNPRYIETIFGIGYRF 224


>gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G +     S           + ++  ++  L   G    
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYTTYSAYSGTEALLFLEKQKVNLIILDLML--PGLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++   I+    VP+IG+S     ++ +    +G DD V KP         I   +  IY 
Sbjct: 63  QVLAEIKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYE 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+    G + + + G +  ++ +  PL + E  IL+ LM +  +   K  I+  +
Sbjct: 123 NQYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +        EN +  HIS LRKK+         + +   +G+ +D
Sbjct: 183 WNEA-LEGSENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKMD 226


>gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 225

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G     G +G ++   +S+   +      + D+   +  L        
Sbjct: 3   ILLVEDDKTIAAGLEYSLGQEGYTVIMCHSVAAGKEAIEEIQLDLCLFDLSL--PDGSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           EL ++ RA S +P+I ++        +   D G DD + KP   +E+++R+        +
Sbjct: 61  ELCKMARAKSDMPIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCNK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E G I + +       +     L   E R+L     N G+ ++++Q+   I+
Sbjct: 121 ENNLKNIFEIGDICINTLDAKVYKKNIEISLTALEYRLLLVFANNIGQVLSRSQLLEGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +  + V +N +  +I ++R+KL +       + + R +GY I
Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLEDDPQNPRIIKTVRGMGYRI 223


>gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 238

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 81/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +   N  +    L  S   D+  ++  L  K     
Sbjct: 15  ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEK--DGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRL 119
           ++ R  RA    P++ ++        +   + G +D               +       +
Sbjct: 73  QVCREARAFYSKPILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRRTEM 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +R   G + +    +  ++Q    P    E  +L  L  + G+ +++  + S + G
Sbjct: 133 DAAGHRLIFGDLVLDKKSKSVKLQNNTIPFSSNEFEVLWLLAESAGQVISRDDLVSKLRG 192

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +    +  V+  + ++RKKL  +      + + R  GY  
Sbjct: 193 I-EYDGFDRSVDVRVCRIRKKLSDDPSNPAKIKTIRGKGYLF 233


>gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +          +G ++E            ++ + DV  ++        
Sbjct: 1   MIKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVM--MPKM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R + A ++  ++ ++    +   +   + G DD + KP   RE++ARV A++RR
Sbjct: 59  NGYEVCRKLEAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRR 118

Query: 119 LKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++ +   ++                 R   V GE+  L  +E  +L  L  +  +  ++
Sbjct: 119 RQIESPEQDSDKEGRLELGGIVIELLSRTVRVDGEICDLTPKEFDLLALLAKHPDRVYSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +   ++   D A     V+ H+ +LRKKL    G   + +   +GY 
Sbjct: 179 EALLEQVW-EMDFAGGTRTVDIHVQRLRKKLGEWQG--LIQTVYGIGYK 224


>gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D      G +G       +           + D+  ++  L       L
Sbjct: 6   ILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWML--PDRSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + + A   +P++ ++    +   +   + G DD + KP   RE++ R+  I RRL  
Sbjct: 64  DICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           +    +     V         + E           L  +E  +L  L+  RG+   + ++
Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +++G +D   +   V++HI +LRKKL      D + +   +GY  + 
Sbjct: 184 LESVWG-YDFPGDMRTVDTHIQRLRKKLD---AADLITTVFGIGYKFEK 228


>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +     +G + +  ++ +  E    +   D   ++  L   G+  L
Sbjct: 7   ILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLML--PGKDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
            + + +R  SQVP+I ++        L     G DD V KP   RE++ARV         
Sbjct: 65  SICKDVRKFSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRATF 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I + ++  + E+  +V  L   E R+L+ LM+  G   ++  +  
Sbjct: 125 AAPSSDETCILTFKHISLNTERFECEINKQVTELTPVEFRLLKTLMSRPGTVFSRESLMQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + Y      V    ++SH+  LR K+       P+  S   +GY +
Sbjct: 185 SCY-EDARIVSNRTIDSHMKNLRNKVALTNDPQPILQSVYGVGYKL 229


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIM--MPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D     V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  + + D+  ++  L   G   +
Sbjct: 39  ILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLML--PGMDGI 96

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV A  R   V
Sbjct: 97  EICRLIRAESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +   G      GE   L   E  +L  L     +  ++  +   ++G 
Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWG- 215

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V +H+ +LR K+  +    + V + R +GY 
Sbjct: 216 YRHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGYK 255


>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNLGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE        I V    R   V G+   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
 gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
          Length = 226

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G+S++          L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVML--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +RA    P++ ++    ++  +   + G DD + KP    E+LARV     R   
Sbjct: 61  AVLQRLRASKATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +    R          L  RE  +L  L   +G+ +++TQI S ++ +
Sbjct: 121 RESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ ++     V + R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRVKIDDEFPVKLVHTVRGVGYVLE 220


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V++      GD G  +          W       D   ++  L   G   L+
Sbjct: 8   LVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLML--PGMDGLQ 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   Q+P++ ++     +  +     G DD V KP   RE++ R+ ++ RR   
Sbjct: 66  VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         V   G+   + G    L  RE  +L +L+A+ G+   +T++ + ++
Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G   E  +++ V  H+ +LR+KL  +      + +    GY  D
Sbjct: 186 GW--EYGDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGYRYD 227


>gi|302559181|ref|ZP_07311523.1| two-component system response regulator TcsR4 [Streptomyces
           griseoflavus Tu4000]
 gi|302476799|gb|EFL39892.1| two-component system response regulator TcsR4 [Streptomyces
           griseoflavus Tu4000]
          Length = 260

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 10/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         G ++EG  +        +    DV  ++  L       +E
Sbjct: 44  LVVEDDRGIAESLERGLRQAGYAVEGVRTGRAALAAAT---PDVVLLDLGL--PDIDGVE 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLKV 121
           + R +RA S   +I ++        +   D G DD + KP      +    A + RR   
Sbjct: 99  VCRRLRARSDAAIIAVTARGEEADRVVALDEGADDYLVKPFGLAELLARIRAVLRRRRPA 158

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+ +    R   V G V PL  +E  ILE L A+ G+ V++ QI    +   
Sbjct: 159 EPELVRHGPLTLDPRTRQVSVDGRVVPLTPKEFGILECLAADPGRVVSRQQILERAWDAH 218

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  V++ H++ LR+KL        +++    G+ +
Sbjct: 219 WYGP-TKVLDVHVAALRRKLGVPG---LIETVYGHGFRL 253


>gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 8/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +        +   +    S      L  + + D+  ++  L         
Sbjct: 6   LIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGL--PDINGEH 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117
           + + IR  S+ P+I I+   S+   +  F+ G DD + KP    E           +   
Sbjct: 64  ICKKIREMSETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNKI 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    NN   T P  +  +    +  GE   L  +E  IL YL+ N GK + + QI   +
Sbjct: 124 KSSNDNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G          ++ HI  +R+K+  N      + +   +GY  D N
Sbjct: 184 WGDDSLYKWSRSLDVHIQHIRQKIELNPKKPKFIKTIPGIGYKFDIN 230


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  +     +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K-12 substr. W3110]
 gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
 gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW
 gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K12 substr. W3110]
 gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. DH10B]
 gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S             L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL         + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGYKIEK 231


>gi|310822156|ref|YP_003954514.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395228|gb|ADO72687.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 241

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++ G      D+G  +    S    + L      ++  ++  L   GE   
Sbjct: 14  ILIVEDDANLRLGLQDNLQDEGYEVATAASTAEADALLREREFELLILDVML--PGEDGY 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A  +  ++ ++     +  L  F++G  D + KP   RE+LARV A+ RR+ 
Sbjct: 72  AFCRRLRGAGLRSMVLMLTARTLEEDILRGFEAGAQDYLTKPYRLRELLARVRALVRRVG 131

Query: 121 VSNNRAETGPIRVFS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +              +     G +  L R E  +L +L+ ++ + + + +I  A++
Sbjct: 132 SPPAQLMGFAGFSLDLGRRQLSRTGGALIELTRTEFDLLVFLLRHQDRALPRQEILDAVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G  D  V+   V++ +S L+KKL         + + R +GY ++
Sbjct: 192 GQ-DVVVDPRTVDNFVSNLKKKLGWTSTSGFTIHTIRGVGYRME 234


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 88/233 (37%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++  +         S    D+  ++  L   G   L
Sbjct: 5   LLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLML--PGMNGL 62

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           ++  R+       P+I ++        +    SG DD + KP                 +
Sbjct: 63  DILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTS 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +   ++ + G + ++ +  +  + G+   L  +E  +L YL    G  + +
Sbjct: 123 GGDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +A++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPDSVHIDSIRGVGYKLVVN 234


>gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
 gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
          Length = 224

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++     F   G  +   +  E       +    +  ++  L   GE   
Sbjct: 5   LLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVML--PGENGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I I+     +  L+ +  G DD V KP     + A+V A+  R+  
Sbjct: 63  TICRKIREISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALIGRMHG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+   R   G I V     +     E   LP +E  +L + + N  +  ++ Q+    +G
Sbjct: 123 SSAGRRIRAGDIEVDVRTHEVWSGEERCELPPKEYELLLFFLENPKRIFSREQLLIRFWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E VV++HI KLRK L        + + R  GY ++ 
Sbjct: 183 -YDFDGNERVVDNHIKKLRKLLGKSGS--MIRTIRKSGYRMEV 222


>gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +   ++      +       +  ++          +
Sbjct: 6   ILVVDDEKEIRDLIEIYLKNEGFQIIKASNGREALEILEEEEVHLIILDIM--MPEMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I +S        +    +G DD V KP +  E++ARV +  RR   
Sbjct: 64  KACMKIREEKNMPIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTK 123

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            NN          E   + +       ++ GE   L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNNAAAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   D     N V  H+ K+R+K+  +      + +   +GY I+
Sbjct: 184 YQKVW-KEDFFDSPNTVMVHVRKIREKIEKDPRNPQYIKTVWGVGYKIE 231


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +          +G  +      E    + +    D+  ++  L    G +V 
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEVC 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR++ 
Sbjct: 66  RRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIRP 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  A++G
Sbjct: 126 GLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ HI +LRK+L      DP+ + R  GYS+D
Sbjct: 186 -SDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSLD 226


>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       DDG  +      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  SVCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +      I +    R   +  E   L   E  IL YLM N+G  + + Q+ +
Sbjct: 123 SVISVTNEDTLMNSGIYIHFPSRTATLDKEAISLTHTEFEILTYLMQNQGIVITREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K   + + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGKK--ANHIVTVVRAGYKFE 225


>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
 gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
          Length = 227

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G ++    +      L    +  +  ++  L   G +  
Sbjct: 6   ILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLML--PGLEGQ 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115
           E+ R ++      ++P++ ++   S    +  F+ G DD + KP   RE    +  +   
Sbjct: 64  EVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +       + +  D  +  +  E+  L   E ++L +L+AN G+   + Q+  
Sbjct: 124 QTGPEEQSAPLRKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++G ++       V++H+ +LRKK+        +++ R +GY 
Sbjct: 184 HVWG-YEYDGYARTVDTHVRRLRKKIGPLSDD--IETIRGIGYR 224


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGY 230


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G       S E    +      D+  ++  L   G    
Sbjct: 6   ILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLML--PGIDGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR ++   ++P++ ++        +   + G +D ++KP   RE++AR+  I RR
Sbjct: 64  EVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123

Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  A    +      +        V      L   E ++L +L+  +G    + QI
Sbjct: 124 RTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++G  + AV E  V+  I+ LRKKL      D +++ R +GY  
Sbjct: 184 VDAVHGE-NYAVTERSVDVTIAGLRKKLG--PCADFIETVRGVGYRF 227


>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +    S E    +  S R D+  ++  L   G   L
Sbjct: 6   ILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLML--PGIDGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RV 112
           E+ R IR        P++ +S        +   + G DD + KP   + ++A      R 
Sbjct: 64  EVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRR 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +       EV G+   L   E  IL +L +  G    + Q
Sbjct: 124 QQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   I G    AV +  V+  IS LRKKL +    + +++ R +GY  
Sbjct: 184 IVDKIRGEH-YAVTDRSVDVLISGLRKKLEDYG--EYIETVRGVGYRF 228


>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 231

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   +      E    +    + +V+ I   ++       
Sbjct: 6   ILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDK-NVALIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R IR  S+VP+I ++     +  L  F+ GVD+ +                      
Sbjct: 65  QVCREIRKESKVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTNQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + +        V G+   L  +E  +L Y + N G  +++ +I + ++ 
Sbjct: 125 ISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR K+  K     + +   +GY  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGEKGN--YIRTIWGMGYKFEV 224


>gi|300694173|ref|YP_003750146.1| transcriptional regulatory protein, probable baer protein, response
           regulator for mdtABCd and acrd [Ralstonia solanacearum
           PSI07]
 gi|299076210|emb|CBJ35523.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           PSI07]
          Length = 222

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 4   MILIVEDEPKLAALMGDYLRAAHYDTEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE+         R  
Sbjct: 62  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 121 QRGGAQPDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 221


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +   +  + +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       S   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLML--PGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E            + 
Sbjct: 65  QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +          G+V  +P +E  +L +L ++  +   + Q
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +   I+G ++   +   V+ HI +LR+K     G   ++S+  +GY 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREK---NQGPSDMESRHRVGYR 227


>gi|300921717|ref|ZP_07137883.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301329917|ref|ZP_07222638.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|300421855|gb|EFK05166.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300844016|gb|EFK71776.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
          Length = 240

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  IMIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233


>gi|259908032|ref|YP_002648388.1| DNA-binding transcriptional regulator BaeR [Erwinia pyrifoliae
           Ep1/96]
 gi|224963654|emb|CAX55151.1| Two-component system response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283477929|emb|CAY73845.1| probable transcriptional regulator ycf27 [Erwinia pyrifoliae DSM
           12163]
 gi|310768055|gb|ADP13005.1| DNA-binding transcriptional regulator BaeR [Erwinia sp. Ejp617]
          Length = 235

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I                +           D+  ++  L   G   
Sbjct: 9   LILIVEDEPKLGQLMIDYLQAAHYRTHHLLRGDEVVDWVKHHTPDLVLLDLML--PGMNG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S++P++ ++        L   + G DD + KP   RE++ARV  I RR +
Sbjct: 67  LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILRRCR 126

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + A       +           +   L   E R+L+ L    GK  ++  + + +Y 
Sbjct: 127 RETDEALNISPLLIDEKRFQASWDDKPLDLTPAEFRLLKTLAQQPGKVFSREHLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWE 228


>gi|6318168|emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728]
          Length = 240

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +  I  F  +G S +    +             ++  ++  L       
Sbjct: 8   ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVML--PDTDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
             L   IR+H+ VP++ ++   +    L  F  G DD + KP +  EI        +   
Sbjct: 66  FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRTT 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +    ++  +     V G     P +E ++L Y   +  + ++K QI+
Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G  +    ++ V  H+ +LR+KL         + + R  GY  +
Sbjct: 186 KDVWG--EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFE 231


>gi|89094628|ref|ZP_01167565.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081098|gb|EAR60333.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        DG + E F   +       ++R D++ I+  L        
Sbjct: 8   ILIVEDEPSIADNVSIALQLDGFTSEHFILAQEGLNALQNSRFDLAIIDVGL--PDFNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S +P+I ++        +   + G DD V KP   RE+  RV AI RR+  
Sbjct: 66  ELCKRIREFSNIPIIFLTARSDEIDRILGLELGADDYVTKPFSPRELSTRVKAILRRVAP 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   +  + +         + +  PL R E  +L  ++ N  +  ++ Q+  A +   
Sbjct: 126 SASTERSDTLILDQKRACIFYREQKLPLTRIEYLLLSKMLNNPEQVFSREQLMQAAWDHP 185

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +++   V++HI  +R KL         + + R LGYS+
Sbjct: 186 EHSLD-RAVDTHIKTIRAKLNEFNPDQQLIKTHRGLGYSL 224


>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G S+    S +           D+  ++  L   G   L
Sbjct: 5   LLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVML--PGLNGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R A   VP++ ++   ++   +  F+ G DD V KP    E++AR+ A+ RR +
Sbjct: 63  EVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRRNQ 122

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  +           +  R          L   E  +L   +    + + +  I   ++G
Sbjct: 123 VERHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D     NV+E +I  LR  L        + + R +GY  
Sbjct: 183 L-DFEGSSNVLEVYIGYLRNMLEADGEARLIHTIRGIGYVF 222


>gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989]
 gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli 55989]
 gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +    +           +  +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
            E+ R      +  +  ++      + +  FD+G DD + KPI  +  +++V      + 
Sbjct: 68  CEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVKALLRRLK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  + G I +  +       G+   LPR+E  +L  L +   K   +  I   
Sbjct: 128 DEEAAAEDIVKVGNIVINREEYKIVNDGQELVLPRKEFELLSLLTSKPNKVFKREVILDK 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V    ++ HI KLR+K+ +    D   + + +GY  
Sbjct: 188 VWGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 226


>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 238

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G   +    +      L  + + D+  ++          
Sbjct: 10  ILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIM--MPDMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I +S        +     G DD V KP   +E+  R+ A  RR  
Sbjct: 68  FEVCKNIRNFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 127

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N             I +  +  +     +   L  +E  +L Y+  N  + + K  I
Sbjct: 128 YIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQMI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++   +    +N +  HI KLR+KL +       + + + LGY +
Sbjct: 188 CDEVW-NDNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKL 234


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +         + + D+  ++      G    
Sbjct: 7   LLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++   + +  +    +G DD V KP    E++AR+ AI RR +
Sbjct: 65  EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +            D  +  +  E   L   E  +L YLM N  + ++K QI   
Sbjct: 125 NAQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+ N        + +KR +GY I
Sbjct: 185 VW-EYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMI 229


>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G S+      +    + S  + D+  ++          L
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIM--MPKRNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ + +R  + VP++ +S        +    +G DD + KP +  E++        R + 
Sbjct: 64  EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +       +V GE   L   E  IL  L +N G+  +  +IF
Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++   D       V  HIS LR+KL     G   + +   +GY I+ 
Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231


>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 235

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++   +            + D+  ++          +
Sbjct: 10  ILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIM--MPKLDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
                IR   ++P+I +S        +   + G DD + KP +        +  L RV +
Sbjct: 68  RTCIKIREDKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTS 127

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++++       +R+    R+  V+     L  RE  ILE L  NRG+ ++  QI+
Sbjct: 128 FSEAKEINDEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++        EN V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 188 EKVWNEP-FYNSENTVAVHIRNIREKIEINPKDPKYIKLVWGVGYKIEK 235


>gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O127:H6 str. E2348/69]
 gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  ++          L    +  V  ++      G    
Sbjct: 12  ILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVM--MPGMDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+   I  +  
Sbjct: 70  EVCRMLKKMDNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRNQFP 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP  +    ++      V  L   E  +L++L+ N G  ++K  I   ++G 
Sbjct: 130 NLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   EEN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 189 YDFGGEENIVEVYIRSLRDKLNDK-NHQLIRTLRGSGYRVD 228


>gi|300789401|ref|YP_003769692.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798915|gb|ADJ49290.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        +G ++                R D+  ++          L+
Sbjct: 6   LVAEDDEKQAEVLRLYLESEGHTVVLAPDGRAALDEARRDRPDLLVLDVM--MPNVDGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI+R  S V ++ ++   +    L   D G DD + KP   RE++ARV  + RR    
Sbjct: 64  VCRILRQESDVAVLMLTARATEDDLLLGLDLGADDYLTKPYSPRELMARVRTLLRRTAGR 123

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +T       R+     +  V G        E ++LE L+   G+   + Q+     
Sbjct: 124 REPPDTALRAGSLRLDPVRHEVSVDGRPVDTTPGEFQLLETLIRQPGRVFTRRQLLELTR 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  D  V   +++ H+  LRKK+  +      + +   +GY +
Sbjct: 184 G-DDRFVSTRIIDVHVLNLRKKIEPDPQKPVHLRTVFGVGYKL 225


>gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +    L      D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIA 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +           +   +   E ++L + M +  +  ++ Q+ + I+
Sbjct: 125 PMAVEEVIEIQGLTLDPSSHRVMSGTQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89]
 gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88]
 gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli S88]
 gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 218


>gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 227

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+          G  +    S E      ++A  DV  ++  L   G   LE
Sbjct: 5   LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWML--PGMDGLE 62

Query: 63  LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           + R +     + VPL+ ++        +   ++G DD V KP+  R + AR+ A      
Sbjct: 63  VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ +   G     +G   PL   E R+L  L A+ G+ +++ Q+  A++
Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR KL      D V++ R  GY  
Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221


>gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +G ++E   S E    + ++   D+  ++  L   G+   
Sbjct: 4   ILIVDDDADLSAIVARYLESEGFAVERAASAEEAYDVLATRAFDLVLLDINL--PGDDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S VP++  S   S    +   D+G DD + KP   RE+LA V A+ RR + 
Sbjct: 62  AACAALRRASDVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRG 121

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                         P  +          G   PL  +E  +  YLMA  G+ V+K ++ +
Sbjct: 122 RAGGEGADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++G F   VE   V  H+S LR K+ +         + R  GY  D
Sbjct: 182 EVWGAF-SEVEPQTVSVHMSWLRAKVEDDPAHPAHFKTVRGRGYCFD 227


>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 226

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G       S             D+  ++           
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVM--MPELDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR   
Sbjct: 62  ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTAG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      +    +      + +   L  +E  IL  L+ +  +  ++ QI ++++G +
Sbjct: 122 GRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
               EE  V+SH+  +R+KLR       + + +   +GY  +
Sbjct: 181 LADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          DG  +    + E           D+  ++  L    G +V
Sbjct: 5   ILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMDGLEV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARV 112
            E  +  R    +P++ ++        +   + G  D V KP   +         +    
Sbjct: 65  CETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVLRRYE 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++   E   + +     +  V G    L   E R+L +L +  G    + Q
Sbjct: 125 QGDETEHVPTDAVIERHGLVIHPGRNEVLVDGRSVDLTYTEFRVLHFLASRPGWVFTRYQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +A+ G  D +V +  V+  I  LR+KL N      +++ R +GY  
Sbjct: 185 IVNAVRGE-DYSVTDRAVDVQIVGLRRKLGNFGH--CIETVRGVGYRF 229


>gi|125973056|ref|YP_001036966.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125713281|gb|ABN51773.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  ++               + D+  ++  L        
Sbjct: 4   ILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLK--DGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    R ++ +P+I +S        +   + G DD + KP   RE+L+R+    RR   
Sbjct: 62  AVCSAARENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   IRV +        G    L   E R+    + N+G  ++++++   I+ + 
Sbjct: 122 AGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLFLVFLNNKGAVLSRSRLLEEIWNIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            E V +N +  +I +LR+K+ +       + + R LGY 
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYK 220


>gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510]
          Length = 249

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +           + +    D+  ++  L   GE   
Sbjct: 7   LLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGREMARVLAQWPVDLIILDLML--PGEDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S  P+I ++   S    +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 65  SLCRSLRAKSGTPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRRCGG 124

Query: 122 SNNRAETGPIRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E   +  F+     +           V  L + E  +L  L+    + V +T++ 
Sbjct: 125 PEPARERPRVLGFAGWSLDQGRRELRTPDRVVVHLSQGEYALLGTLLERAPQVVERTELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               G      +   ++  IS+LR+KL     G   + + R +GY  
Sbjct: 185 EKHRGDTSIPFD-RSIDIQISRLRRKLEEGPGGSGLIKTVRGIGYQF 230


>gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1]
 gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI1]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|56964991|ref|YP_176722.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911234|dbj|BAD65761.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 84/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   ++          G  +    + E  +    + + D+  ++  L        
Sbjct: 4   IYIVEDDQQIRRIMADHLERYGYRVTWAENFETIKQEFVAIQPDLVLLDINLPL--YDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
              R IR  S  P++ IS        +   ++G DD + KP H           +     
Sbjct: 62  YWCRQIRTVSNAPVLFISARTDDMNQVMAIENGGDDYITKPFHLEVLLAKVKSALRRSYG 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +     E   +  + D  +         L ++E  + + L  +    V++ ++
Sbjct: 122 EYAHARDIQQTVRELDNLYFYPDRNELVYNDAKLELTKKEFLLFQRLAESPNVIVSRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++   D  V++N +  ++++LRK+L+     + + + R  GY +D N
Sbjct: 182 LETLWDEVDF-VDDNTLSVNVTRLRKRLQELGITNAIQTIRGQGYRLDVN 230


>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    + L      S++  ++ E      S A  DV  ++  +    G   
Sbjct: 3   ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFTF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R   +   + ++   D    +     F +    V            R        +
Sbjct: 63  LKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  +   I +    +       +  L  +E  +LEYL  +R + +++ QI   ++  
Sbjct: 123 VSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E N+++  I  LR+KL N      + +KR LGY I
Sbjct: 182 YDYDGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       +    ++          L      D+  ++  L   G    
Sbjct: 3   ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVML--PGVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +RA+   P++ ++   +++  +   + G DD + KP    E+LARV A+  R   
Sbjct: 61  GILAAVRANKDTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R     G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  + +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPFEAKLLHTVRGMGYVLE 220


>gi|309775270|ref|ZP_07670279.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916933|gb|EFP62664.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 82/233 (35%), Gaps = 15/233 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D         G       +      +  S   D++ I+          
Sbjct: 4   VILIAEDEASIADAIEIYLKSQGYQTLKAANGAAAWEIVESTPVDLAIIDVM--MPVMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L   IR     P+I +S        +   + G DD V KP    E+LARV A  RR  
Sbjct: 62  IALTMKIRETYDFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHM 121

Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 E                    ++  V GE   L   E RIL+  M + G+  + 
Sbjct: 122 RYRQLLEQKQEVEDSLLLGGIELHRKSKEVFVDGEPRRLTPIEFRILQLFMEHPGQVFSS 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+  ++   + AV    V  HI  LR+K+  N      +     +GY I+ 
Sbjct: 182 DDIYEHVW--KEAAVNTETVMVHIRNLREKIEINPRTPRYIKVVWGVGYKIEK 232


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +         +   D+  ++      G    
Sbjct: 7   LLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVM--MPGMDGF 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P++ ++   + +  +    +G DD V KP    E++AR+ AI RR +
Sbjct: 65  EVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +            D  +  +  E   L   E  +L YLM N  + ++K QI   
Sbjct: 125 SVQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+ N        + +KR +GY I
Sbjct: 185 VW-EYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMI 229


>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 237

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 16/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D       ++  ++    + +       S + D++ ++  L        +
Sbjct: 6   LVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVML--PDIDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++       T+     G DD V KP     ++ARV A  RR K  
Sbjct: 64  ICKKIREKYTYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRRYKKY 123

Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           N+ +E                  +        V G    L   E +IL+ L   +G  V 
Sbjct: 124 NSFSEPMDSEGKETIITTSNGLVMNISAHVCIVDGTSVELTPTEFKILQTLCEKKGLAVM 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++F +++         N +  HI  LR+K+ +       + +   +GY ++
Sbjct: 184 SEELFRSVWPDEFYDKNSNTITVHIRHLREKMGDTTEEPRYIKTIWGVGYKVE 236


>gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 225

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    ++  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLML--PDISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|154688064|ref|YP_001423225.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
 gi|154353915|gb|ABS75994.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
          Length = 240

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +  I  F  +G S +    +             ++  ++  L       
Sbjct: 8   ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVML--PDTDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
             L   IR+H+ VP++ ++   +    L  F  G DD + KP +        +   +   
Sbjct: 66  FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMT 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +    ++  +     V G     P +E ++L Y   +  + ++K QI+
Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G  +    ++ V  H+ +LR+KL         + + R  GY  +
Sbjct: 186 KDVWG--EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFE 231


>gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +E                  +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       +DG  +      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  SVCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I +    R   V  E   +   E  IL YLM N+G  + + Q+ +
Sbjct: 123 SVISVTNEDTLMSSGIHIHFPSRTVTVDKEAKSITHTEFEILTYLMQNQGNVITREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K   + + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGKK--ANHIVTVVRAGYKFE 225


>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V G    L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKKPLENEDDTLSIHGIYVHFPSRTVTVDGANITLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKCITTVVRTGYKFEGN 228


>gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 241

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G ++E            ++   D+  ++  L   G   L+
Sbjct: 6   LLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVML--PGLNGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  Q  P++ +S   + +  ++    G DD + KP H  E L RV  + RR   
Sbjct: 64  VCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRRRAE 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +                      +     L  RE  IL  L+   G+ V++ +I   ++G
Sbjct: 124 TPRAVYEFAGHRIDFRAWTAYLKDGRKEVLGEREMAILRLLIERAGQVVSRDEILDRVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +       +++ + +LR+           + +   +GY  
Sbjct: 184 Q-EVFPSSRTIDNFVVRLRRLFEPDPARPVHLHTVWGVGYRF 224


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
 gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
          Length = 230

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD   +++                        L    + D+  ++  L G  G +  
Sbjct: 7   LIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSGIEFA 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +  +  S++PLI ++        +   + G DD + KP   RE++AR+ A+ RR  V
Sbjct: 67  RRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTAV 126

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+         +G+   +   E ++L++ M ++ +   + Q+   ++G
Sbjct: 127 QGMETPIEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 187 -GNVYVEERTVDVHIRRLRKALE-PSHHHLVQTVRGTGYRF 225


>gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 231

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +    + E    +  S    +  ++  L   G    
Sbjct: 5   ILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVML--PGIDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           ++   +R  +  + +I ++        +     G DD + KP +  E+  R        I
Sbjct: 63  KVCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N  E+   ++ +  R     G+   L   E  I++  + N+G+ + + ++ +
Sbjct: 123 PEDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  +   +  +V+ +I +LR K+  +      +++   LGY  +
Sbjct: 183 KVWGE-EFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGYRWN 228


>gi|300697799|ref|YP_003748460.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299074523|emb|CBJ54074.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CFBP2957]
          Length = 222

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 4   MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE+         R  
Sbjct: 62  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 121 QRGGAQPESLLQIDNAAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221


>gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 234

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     D        +G  +   +            R D+  ++          L+
Sbjct: 6   LVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVM--MPVMSGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R +RA S V ++ ++   + +  L   D G DD V KP   RE++ARV  + RR +  
Sbjct: 64  ACRALRAESDVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRRSRRD 123

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + A+      P+ V        V G        E ++L  L A  G+ + + Q+   I+
Sbjct: 124 PDDADRVLRAGPVAVDPSRHAVRVDGVPVTCTPAEFQLLAALAAQPGRVLTRAQLLEHIH 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G+    + E  ++ H+  LR+KL  +      + +   +GY +
Sbjct: 184 GMS-RFITERTIDVHVKNLRRKLEPDPRRPVRLVTVYGVGYKL 225


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +       + S    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +   +RA    +P++ ++         +  D+G DD + KP  +  ++ARV A    R 
Sbjct: 61  RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +RV +  R   V      L  +E  +LE L    G  V+K QI   ++
Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + N++E +IS LR+KL        + + R  GY +
Sbjct: 181 D-FAYDGDPNIIEVYISSLRRKLGAP----RIQTVRGAGYRL 217


>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 226

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG                   R D+  ++  L   G   +
Sbjct: 6   ILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLML--PGIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV A       
Sbjct: 64  EVCRLIRAESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      G    L   E  +L  L         +  +   ++G 
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             +A +  +V  H+ +LR K+   L    V  + R +GY 
Sbjct: 184 RHQA-DTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGYK 222


>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +   ++      +   +  D+  ++  L       L
Sbjct: 5   ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWML--PVISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L   +R      P+I ++    +   +   ++G DD V KP    E+LARV A   R  
Sbjct: 63  DLCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTH 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N      + +    R+     ++  L  +E  +LE+++ +  + + + QI   ++G
Sbjct: 123 AQDLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL +      + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYIRALRVKLESANPKRLIQTVRGVGYVL 222


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +       +      D+  ++  L       +
Sbjct: 6   ILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIML--PYMNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR +S+VP+I ++    +   +   D G +D + KP    E    +         
Sbjct: 64  EVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKNH 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   ++G +++  D        E   L ++E  +L Y + N    + + +I   ++
Sbjct: 124 GISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + N+V+ +I  LR K+ +K     + + R +GY +
Sbjct: 184 G-YDYMGDTNIVDVYIRYLRSKIDDKYNKKIIYTIRGVGYLL 224


>gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 227

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++   +      L  +A  D+  ++  L        
Sbjct: 3   LLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + +R A   VP++ ++   S+   +   + G DD + KP    E+    R       
Sbjct: 61  RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ +R +   + +    R     G+   L  +E  +LE L  ++G+ +++  I S ++
Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 181 DI-NFDSDTNVIDVAIRRLRAKMDDDFEPKLIHTVRGMGYRLD 222


>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLML--PGRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 68  VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + + +   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225


>gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D         G  +   ++              +  ++  L        
Sbjct: 7   ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLML--PDIPGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
           E+   +RA S VP++ ++     +  L     G DD V KP +  E            + 
Sbjct: 65  EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + + +  +     G    L   E ++L  L  +  +  ++ ++   
Sbjct: 125 DHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G+ D   +   +++H+  LR K+ +       + +   +GY  
Sbjct: 185 VFGM-DFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228


>gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A    +G  +    +      L  S   ++  ++  L     +  
Sbjct: 4   ILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLML--PDIQGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ +IIR  S V +  ++   +L+  ++  ++G D+ + KP   RE    +  +      
Sbjct: 62  EICKIIRNKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    + G + +  D R  +V+G    L   E  IL  L  N+GK + + Q+   ++
Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ D    +  V+ HI  +RKK+         + +   LGY  
Sbjct: 182 GM-DFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGYKF 223


>gi|229060536|ref|ZP_04197897.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228718780|gb|EEL70404.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 224

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++  +       + 
Sbjct: 13  LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 71  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++           +   + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 127 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 186 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 221


>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
 gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
          Length = 224

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G +++                 D+  ++           
Sbjct: 4   ILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIM--MPNLDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR   +  P+I +S        +  FD GVDD V KP   +E++ R+ AI +R  
Sbjct: 62  SACREIRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTS 121

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S  +   +   + +   GR  +++ E   L  +E  +L YL+ NRG  + + ++   ++
Sbjct: 122 QSEKKELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +E  +++HI  LRK LR       + + R +GY  +
Sbjct: 182 G-YDFFGDERTLDTHIKLLRKNLREYS--RYITTLRGVGYRFE 221


>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 1   MF---VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
           M    +LI+D   + +        +G  ++     E    +  S   D+  ++  +    
Sbjct: 1   MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMI--PK 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IR    +P++ ++        +     G DD + KP    E++ARV A   
Sbjct: 59  MNGFEVCKKIREKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLA 118

Query: 118 RLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +         N  +   + +  D R   V  E   L  +E  +L +L ++  K  +K 
Sbjct: 119 RYERLVGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +F  I+G+ D   +   V  HI K+R+K+         +++    GY 
Sbjct: 179 HLFERIWGV-DALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYR 226


>gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EDL933]
 gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227]
 gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. Sakai]
 gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11]
 gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a]
 gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026]
 gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str.
           REL606]
 gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. TW14359]
 gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11]
 gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli ED1a]
 gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli UMN026]
 gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli B str. REL606]
 gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O157:H7 str. TW14359]
 gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. 493-89]
 gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. H 2687]
 gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180]
 gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74]
 gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
 gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
          Length = 236

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 85/231 (36%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L  S   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIML--PQLDGIE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           + + IRA     P++ +S        +   + G DD + KP   RE++AR+         
Sbjct: 64  VCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRRTDK 123

Query: 113 --AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + +        + ++ +  +      +  L  +E  +L YL+ +    + +
Sbjct: 124 EDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMTLTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR K+ +       + + R  GY  
Sbjct: 184 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKF 233


>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       + G  +      E         R D++ ++  +  K     
Sbjct: 4   ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+ +  +P++ ++        L  FD G DD V KP   +E++ARV A+ RR +V
Sbjct: 62  ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N               +         LP +E  +L  L+++ GK   + Q+   I+G 
Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
           +D   +E  V+ HI +LR++L +       + + R LGY 
Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S++   + +       +A  D+  ++          L
Sbjct: 3   ILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIM--MPEMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L + +R   S+VP++ ++   S Q  +   DSG DD + KP    E    +  +     
Sbjct: 61  TLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + + +        G+   L  +E  +L+YL+ N+G  +++ QI    
Sbjct: 121 AQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F      N+V+ +I  LRKK+        + + R  GY +
Sbjct: 181 WD-FSYEGYSNMVDVYIKTLRKKIDRDFEPKLLHTVRGTGYVL 222


>gi|223983413|ref|ZP_03633599.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
 gi|223964585|gb|EEF68911.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
          Length = 232

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   + +G       +G +++   + +  E L    + D+  ++  L        +L 
Sbjct: 7   VEDDLSLINGLSFALNKEGYAVDVARTKQEAEALWLKEKFDLVILDVSL--PDGSGYDLC 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRRLKV 121
           R IR  S VP+I ++        +   D G DD + KP         +  +         
Sbjct: 65  RQIRQTSTVPIIFLTAADEETEIIMGLDLGGDDYITKPFKLAVFLSRIHALLRRQENFSP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++    +  IRV    R     GE+  L   E ++L  LM N  + +   QI S ++   
Sbjct: 125 ADRELASNGIRVQRLERSVYKNGELVNLTAGEYKLLCLLMENPNQVLTPEQILSKLWDCD 184

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +  V+ N +  +I +LR K+ +       + + R LGY  + 
Sbjct: 185 ENYVDANTLTVYIRRLRAKIEDDPSDPKKIVTLRRLGYKWNV 226


>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 232

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++          L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++    P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E           +    R+         L R E  +L   + N  + + ++ + 
Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDCEARLIHTVRGVGYVLREAN 231


>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
          Length = 230

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +     G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++ A        +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225


>gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 235

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G S++  +  +  + +  +    +  ++  L   G    
Sbjct: 4   ILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVML--PGADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R   
Sbjct: 62  AICRAVRKELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +        V G    L  RE  +L +L  +     +K  ++
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++ L D     + V  H+++LR+K+  +      + +    GY  +
Sbjct: 182 DRVWDL-DAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFN 228


>gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++         G +     S+E  + L      D+  ++  L    G + 
Sbjct: 5   ILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLPGMNGLEF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
             L +       +P+I ++        +   + G DD V KP   RE+ AR+ A    R 
Sbjct: 65  ARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++++  E   +R+           +   L   E R+L + M N  +   ++Q+   ++
Sbjct: 125 PQMTDDPIEMAGLRLDPTTHRVTGNNKTIDLGPTEFRLLHFFMTNAERVHTRSQLLDKVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           G     VE+  V+ HI +LR  L      D + + R  GY + + N
Sbjct: 185 GDR-VFVEDRTVDVHIRRLRNALSLSGHEDLIQTVRGAGYRLSEKN 229


>gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 236

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  + G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GISGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +         +      +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLLLDPVSQRVSFGDSILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPYGADRFVQTVRGTGYRF 227


>gi|255323823|ref|ZP_05364949.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255299003|gb|EET78294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 230

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G+                    D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLESEGLKPIPVMDGNDAVPAFEQHEPDLILLDLML--PGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRAIRRESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        V         + +     L   E  +L  +    G+   +  +  +++G
Sbjct: 123 AESEILEVADLVIDVPEHTVRRTDGTELNLTPLEFDLLLEMARRPGQVHTRESLLDSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             + A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 YRN-ASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222


>gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
 gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
          Length = 224

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   +     +  +    D   ++A L   G+   
Sbjct: 3   ILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAML--PGKDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+     P++ ++     +  +   D G DD V KP    E+LAR+  I +R  
Sbjct: 61  EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +          + +D +     G    L  +E  ILEY++ N+   +++ QI S  +G
Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   E N+++ +I  LRKK+ +      + + R +GY +
Sbjct: 181 L-DFEDESNIIDVYIRYLRKKIDDDFDVKLIQTVRGIGYML 220


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ N       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIENNPIQPQVLVTRRGVGY 230


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +               A  D++ ++  +   G   + 
Sbjct: 14  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMV--PGMDGVS 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR    
Sbjct: 72  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 131

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++     G + V ++G +   +G+   L   E R+L    A  G  +++ 
Sbjct: 132 GGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLSRD 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 192 QLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 235


>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 237

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E      +    D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R    +P+I ++   +    +   + G DD V KP  +R               
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V       +  N     G + +  D    E  G+   L  RE  +L YL ++ G+ + + 
Sbjct: 123 VQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +    +G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGY 229


>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 235

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +++G + +   +G       +      L    + D   ++           
Sbjct: 3   ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIM--MPELDGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR H    P+I +S        +   + G DD ++KP    E+ AR+  I RR  
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + VF +            L  RE  IL YL  ++G+ + +  +F
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            A++G +D   +   ++ HISKLRK +  + +    + +    GY 
Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225


>gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 239

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + GV ++     E       S   DV  ++  L       L
Sbjct: 5   ILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVML--PNMSGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR       +I ++   S    +   + G DD + KP   RE+ ARV +  R++ 
Sbjct: 63  DICRKIRDERPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVH 122

Query: 121 VSNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                                          +  +   L   E  +L +L ++ G+  ++
Sbjct: 123 ALRQSHVPSQQPDEALNTGDLRIDQKTHQVFLAEQELVLTATEFELLHHLASHPGQVFSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +Q+  +++G +  +  E+ V SHI++LR KL  +      V +   +GY  +
Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRAKLENDATSPKIVQTVWGVGYKFN 233


>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 229

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +      G S                   D+  ++  L   G    
Sbjct: 7   ILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIML--PGMDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        L   + G DD + KP   RE++AR+ +++RR++ 
Sbjct: 65  AVCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEW 124

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N    +GP +  +   G    + G   PL   E R++  L ++ G+   + QI    Y 
Sbjct: 125 GNPVPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAY- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             D+ V + +++SH+  +RKK+ +     D + S   +GY  +
Sbjct: 184 HGDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRYE 226


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    +      L ++   D++ ++  L        
Sbjct: 8   ILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVML--PDMDGF 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            +   +R   +  P++ ++   S+  T+     G DD + KP         +  V    +
Sbjct: 66  AVTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTK 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D  +    G V  +   E ++L YLM N G+ V+K QI   +
Sbjct: 126 ADDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+        + +KR +GY +
Sbjct: 186 WD-YDFRGEAGIVESYISYLRRKIDVDGLEPLIHTKRGVGYVL 227


>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 239

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +   +      +    L +  +  +  ++  L       +
Sbjct: 8   ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWML--PVYDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            + R IR  S VP+I ++   S        D G+DD + KP          R +L R+  
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + ++  V +   E GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY---SIDWN 223
             ++G +D   + N V+ +I  +R K+ N      + + R LGY    +D N
Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCLRKLDDN 235


>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G      +  E    L SS + D++ ++           
Sbjct: 4   ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVM--MPVMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R  S +P+I ++     +  ++    G DD ++KP    E++AR+ A+ RR   
Sbjct: 62  DFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQ 121

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N                        R  +V      L  +E  +L +L  ++G+   + 
Sbjct: 122 RNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++++GL D    E  V++HI  LR KL+       + +   +GY +
Sbjct: 182 HLLTSVWGL-DYEGTERTVDTHIKTLRMKLKPYGN--VIQTVWGIGYKL 227


>gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 234

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         + G  +   ++             D++ ++  LI       
Sbjct: 5   ILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLD--LIMPIMNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S +P++  S    +   +     G DD + KP    E++AR+ +  RR   
Sbjct: 63  ELTKNIREISNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRCYE 122

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++R +                 D    E  G    +   E +IL  LM   G+  +K Q
Sbjct: 123 LDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSKAQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           ++ +I G +    +++ +  HIS LR+K+  +      + + R +GY I+ 
Sbjct: 183 LYESINGEYC-DSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIEV 232


>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
 gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
 gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEVVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKI 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 223

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D  +      G ++E  +      +L      D   ++  L       L
Sbjct: 3   ILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGL--PVLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  R A   +P++ ++   +    +   D+G DD + KP H  E+LAR+ A+ RRL 
Sbjct: 61  SVLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++ + + GPI + +      V G+   L   E ++L  LM  +G+ +++T++   IY 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLSRTELSEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PHDSDRDSNTIEVFVGRLRKKL----PPGSIETVRGLGYRL 216


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +       +   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +       + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231


>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G  +      E    +  S +  +  +   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTK-GIDLLVLDVMMPRMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR  S+VP+I ++        L  FD GVD+ ++KP   + ++AR+ AI  R  +
Sbjct: 65  EVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTRQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G I +        +  +   L  +E  +L Y M N G+ + +  I + ++  
Sbjct: 125 QDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+ +K     + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGSKGA--YIRTIWGMGYKFEV 223


>gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++       G +G  +         + L ++ R D+  ++  L   GE  L
Sbjct: 6   LLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLML--PGEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            + R +RA S +P++ ++        +   + G DD + KP + RE+LAR+         
Sbjct: 64  SICRRLRARSGLPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLRRADG 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +    S   A  G +           +GE   L   E  +L   +    + +++ Q+
Sbjct: 124 AMPQPQFQSRRVAFAGFVADLDARSVGCAEGEALDLTSAEFELLACFLERPKRVLSRDQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
                G       +  ++  +S+LR+KL          + + R  GY  
Sbjct: 184 LDWTRGRS-ADPFDRTIDVSVSRLRRKLVAAAPEAALLIKTVRNGGYLF 231


>gi|306833114|ref|ZP_07466244.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424688|gb|EFM27824.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 218

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D           +    L+  +  +++ +   +       L
Sbjct: 3   ILIVEDEDMIREGISDYLTDCSYETIQAADGQEA--LEKFSSYEIALVLLDIQMPKLSGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMGAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                     RV  +     + GE   +  +E  IL+YL+ N  + + ++QI  A++   
Sbjct: 121 KGRVFIYKDTRVDFESYSASLAGEEVAINAKELEILDYLVKNERRVLTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   E V++ +I  LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFERVIDVYIKGLRKKL----HLDCIHTVRNVGYKLE 216


>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 230

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F   +           D++ ++           
Sbjct: 5   ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVM--MPDLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            L + IR     P+I ++   +    ++    G DD + KP +          ++     
Sbjct: 63  SLLKKIREDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYTR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  V+    +   + + +D     +  +   L   E  IL YL + RG  V   ++
Sbjct: 123 YNTNEPAVNQQIYDFNGLMINNDNHKCTLYDQPLNLTPIEFSILWYLCSKRGSVVTSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +H+++LR+K+  N      V +   +GY+I+
Sbjct: 183 FEAVWQEKYLD-NNNTVMAHVARLREKMNENARKPKFVKTVWGVGYTIE 230


>gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    S             D+  ++  L       L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N          + V+ D R   +      L   E  IL  LM+   K  +++ +   +
Sbjct: 121 LSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTPTEFDILHALMSTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +      + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 216

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  IL  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|226311091|ref|YP_002770985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094039|dbj|BAH42481.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 255

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +   +E   + E  E    S    +  ++  L   G    
Sbjct: 32  ILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVML--PGRSGW 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +   IRA S  P+I ++    +   L   + G DD + KP    E++ARV       ++
Sbjct: 90  SILEYIRAKSSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRRSKQ 149

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   N+  + G ++V        + G       ++  +  +L   + +   + Q+   ++
Sbjct: 150 LIEGNHVKQFGSLKVDFKAYSVMLHGIELAFTPKDLCLFLFLAQYKNQTFTREQLIEQVW 209

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G+ D    +  V+  I ++R+ L N       + + R LGY +
Sbjct: 210 GM-DYEGSDRAVDLAIKRIRRSLENWPTSEGEIRTYRGLGYKL 251


>gi|261344617|ref|ZP_05972261.1| transcriptional activator protein Irlr [Providencia rustigianii DSM
           4541]
 gi|282567532|gb|EFB73067.1| transcriptional activator protein Irlr [Providencia rustigianii DSM
           4541]
          Length = 223

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 97/220 (44%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G  ++         +        +  ++  L   G    
Sbjct: 3   ILLIEDHLKTQGWVKNGLEEAGFLVDVATDGRDGLYFALENNYQLVILDIML--PGMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +++R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  DILKVLRTSKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVHQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +++     + E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 TSTNMTIADLKIDLVRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ +      +++ R +GY ++
Sbjct: 180 DFDSDTNIIDVAIRRLRKKIDDGFDVKLIETIRGMGYRLN 219


>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 246

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ + I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIM--MPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++  + +   +G         +           D+  ++  L   G   ++
Sbjct: 6   LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWML--PGGSGIQ 63

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +  + +     +P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  IAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++          R+          G    +   E R+L + M +  +  ++ Q+   +
Sbjct: 124 SPTSLEEAIDVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHTERVYSREQLLDQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISPLGHDRLVQTVRGAGYRF 225


>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 244

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +    + +    D+  ++  L   GE  L
Sbjct: 12  IVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLML--PGEDGL 69

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + R +R A+   P+I ++        +   + G DD + KP + RE             
Sbjct: 70  SICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRRP 129

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R     GE   L   E  +L+ L+ +  + +++ 
Sbjct: 130 APEAPGAPSKEPQVVNFGPFEFDLSLRRLSKNGEQIALTTGEFSMLKALVRHPRQPLSRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  IS+LRK L  +      + +   +GY  
Sbjct: 190 KLAQLARGR-EFEPFDRSLDVQISRLRKMLEPDPAQPRYIQTVWGVGYVF 238


>gi|295105634|emb|CBL03178.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++        +G  ++GF S E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRAAEPELVILDVML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAI 115
             + + +R      ++P+I ++   S   T+   D G DD +     I       RVA  
Sbjct: 59  FSILKKLRNTPSLRKLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +V  +      I++ +      V      L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEVRPDVLVFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKL 220


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++    L  + G  +E  +  E       S       +   ++      +
Sbjct: 4   LLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDST---FDLLIIDIMMPNISGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        ++   +G DD + KP  + E++AR+ A+ RR +V
Sbjct: 61  EVCRRIREKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +N            E   + +++   +    G    L  +E +IL  L+++  K  +  
Sbjct: 121 YDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            IF +++         N +  HI  LR KL         + +    GY  + 
Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232


>gi|228998532|ref|ZP_04158120.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|229006008|ref|ZP_04163698.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228755276|gb|EEM04631.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228761257|gb|EEM10215.1| Response regulator [Bacillus mycoides Rock3-17]
          Length = 240

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +   +G   +  + +      +    + D+  ++  ++      
Sbjct: 13  ILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIILD--IMLPDLDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117
             + + IR  + VP+  +S        +     G DD + KP   +     +       +
Sbjct: 71  YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    + G IR+            +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YQEKARIMYQFGDIRIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +       + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKLN 234


>gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
 gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
          Length = 243

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +  ++   ++ E    + ++    ++ ++          +
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A     +        +    R  ++ G+   + + E  IL  + A + +     +I
Sbjct: 135 FNQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +++         N V  HI++LR K+         + +   +GY I
Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241


>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
 gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
 gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
 gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G ++      +    +       +  ++          +
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIM--MPKMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R +R    +P++ +S        +    +G DD + KP +        + ++ R   
Sbjct: 63  EVCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYY 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  E G + +  +     V G    L  RE  IL  L  N+G+  +  +IF
Sbjct: 123 FSGANNEDKDVIEVGAVIIDKEKHSVTVAGNDIILTSREFDILYLLANNKGRVYSTEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++         N V  H+S++R K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230


>gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
 gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 98/220 (44%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G  ++  +      +        +  ++  L   G    
Sbjct: 3   ILLIEDHLKTQGWVKNGLEEAGFLVDVADDGRDGLYFALENNYQLVILDIML--PGMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVNQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +++     + E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 VSTTMTIADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ ++     +++ R +GY ++
Sbjct: 180 DFDSDTNIIDVAIRRLRKKIDDEFEIKLIETIRGMGYRLN 219


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E                +  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72]
 gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp.
           BH72]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L +D  ++ DG +      G +++   +    +   +S   D+  ++  L    G +V
Sbjct: 3   ILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGIEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R     S +P++ ++    ++  +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 63  LKRLRA--RKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +      R  ++ G+V  L  RE  +LE  +   G+ V+K Q+   + G 
Sbjct: 121 GQPRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEASG--VRIVTVRGLGYCLE 218


>gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++E  +S  +           +  ++  L        
Sbjct: 4   ILLVEDDKTIAMGIEYALTQEGFTVEVCHSAGYARERWGKGGFSLVILDVSL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R     S  P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 62  ELCREFGGQSDTPVIFLTACDEEVNVVMGLDMGADDYITKPFRVRELVSRIKSVLRRYNK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S        +             +      L   E R+L  L  ++G  + + QI   ++
Sbjct: 122 SMPNNAEINLGKLIINTAEAKVYKDGEAVLLTALEYRLLLTLANSKGLTLTRNQILEGLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +  + V +N +  +I +LR+K+ +       + + R LGY 
Sbjct: 182 DVAGDFVNDNTLTVYIKRLREKIEDDPQQPQIIKTVRGLGYK 223


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L      A+  +   ++E  +       L  +   D+  ++  L       +
Sbjct: 3   ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVML--PRLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R IR+   Q+P++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGV 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +          ++     +      +  L  +E  +LE  + +  +  + + I   I+ 
Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR KLRN     D V++   +GY +
Sbjct: 181 YEDTPGEE-AVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221



 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 3    VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
            ++ DD  L++    +L    G  +    + +      S+   DV  ++  +    G + +
Sbjct: 1380 LVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWETM 1439

Query: 62   ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
             + +       +P++  S Y          D    
Sbjct: 1440 AMLKESTETKHIPIVICSVYKPTSNHQPSRDFVDW 1474



 Score = 55.4 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           + +DD   +      L    G+ +   +              D+  ++  +    G ++ 
Sbjct: 382 LAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIELC 441

Query: 62  ELPRIIRAHSQVPLIGISDY 81
           ++ R     S++P++ ++ +
Sbjct: 442 QVVRNDPQWSELPILFLTVH 461



 Score = 43.5 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 15/40 (37%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS 41
             ++++D A + + ++ LF    +      +      L   
Sbjct: 1501 ILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQE 1540


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +         + + D+  ++      G    
Sbjct: 13  LLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVM--MPGMDGF 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++   + +  +    +G DD V KP    E++AR+ AI RR +
Sbjct: 71  EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 130

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +            D  +  +  E   L   E  +L YLM N  + ++K QI   
Sbjct: 131 NAQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+ N        + +KR +GY I
Sbjct: 191 VW-EYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMI 235


>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQML--PGRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A   R  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221


>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 225

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHISTVIRVGYKFEE 225


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    + D+  ++          +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVM--MPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EVCMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   +            V +D R   V+G    L  +E  IL+ L  N+G  ++  +I+
Sbjct: 128 YNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         D    +    +          ++ DV  ++           
Sbjct: 21  ILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVM--MPYVDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E  + IR  S VP+I ++        +  F+ G DD + KP        R          
Sbjct: 79  EACQRIRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +V+      G I +        V+G+   L   E  +L +L AN G    +  +F  
Sbjct: 139 YKHRVAPPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   E N+V+  + +LR+K+         + + R +GY +
Sbjct: 199 VWG-YDYVGETNLVDVCVRRLREKVESEPSRPRLILTVRGVGYKM 242


>gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +     +    DG  +           L      DV  ++  L   G   +E
Sbjct: 9   MVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGL--PGLDGVE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILARV 112
           + R +R  S   ++ ++       TL     G DD + KP                    
Sbjct: 67  VCRRLRTFSDAYVVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRTG 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +           G + +   GR+  V GE   L R E  +L  L +  G   ++ +
Sbjct: 127 FTGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRAR 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +   ++G  +   ++++V+ HI  +R+KL +       V + R +GY +
Sbjct: 187 LIDTVWG-PEWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGYRM 234


>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
 gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
          Length = 237

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 10/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            +  R      Q+P+I ++     Q  +   D+G DD V KP   +E        +  R 
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   +   N           +             L   E R+L +LM +  +  +++Q
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAMNGESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   E            S    D+  ++          +
Sbjct: 4   ILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLM--MPFMDGM 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA     P+I ++        L   +SG DD V KP   RE++ARV A+  R  
Sbjct: 62  TCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTM 121

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + + +      V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 122 PRPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L        + +   +GY  D
Sbjct: 182 VW-NYDYFGEDRTVDTHVKMLRGHLGK--CRSYIATVWGIGYKFD 223


>gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 227

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++      F  +   +    S E         + D++ ++  L   G    
Sbjct: 3   ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVML--PGMNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           E+ + +R    ++ +I ++        +     G DD V KP +  EI  RV A+ R   
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N+  E    ++    +    +     +  +E  +++  M N GK   + ++ +
Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224


>gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 223

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D           F ++G + +   S +    L  +   D+  ++  L   G    E
Sbjct: 4   LIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIML--PGRDGWE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLK 120
           +   +R   S+VP+I +S   ++   +   + G DD + KP    E+       + R   
Sbjct: 62  VLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGPS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R     + +   G     +G    L  +E  +L  L+  +G+ +++T I   ++G+
Sbjct: 122 RQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWGI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N+V+  I +LR+K+ +      + + R  GY ++
Sbjct: 182 -NFDSDTNIVDVAIRRLRRKVDDPFERKLIHTVRGAGYVLE 221


>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Cupriavidus metallidurans CH34]
          Length = 235

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGATF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
            +  R      Q+P+I ++     Q  +   ++G DD V KP   +E+      + R  A
Sbjct: 65  AKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V                   +       L   E R+L +LM +  +  +++Q+ 
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDDGGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|328950115|ref|YP_004367450.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450439|gb|AEB11340.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D   V+ G        G ++    +             DV  ++  L    G + L
Sbjct: 5   LLVEDEESVRVGLRLGLRQAGFTVLEAATAAEGWAQLEGC--DVVVLDWMLPDEPGIRFL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R       +P++ ++   +    ++    G DD + KP    E++AR+ A+ RR   
Sbjct: 63  ERLRRTPRFEGLPVLMLTARAAEADRVEGLTRGADDYLVKPCSLPELVARLKALLRRAGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G   +  +  +  V+G    L RRE  +L +L  + G+   + ++   ++G  
Sbjct: 123 RRVVERPGL-VLDLERMEVRVEGRPVELTRREFDLLAHLARHAGRVFTREELLEQVWG-P 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           D       V+ H+++LR+KL +       +++ R  GY  
Sbjct: 181 DFFGTARTVDQHVAQLREKLGDAPNAPRFIETVRGKGYRF 220


>gi|306834322|ref|ZP_07467439.1| phosphate regulon response regulator [Streptococcus bovis ATCC
           700338]
 gi|304423495|gb|EFM26644.1| phosphate regulon response regulator [Streptococcus bovis ATCC
           700338]
          Length = 225

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M   ++D   +++  +      G   +GF             +  +  ++  L    G  
Sbjct: 1   MIYCVEDDDDIRELMLYTLRTAGFEAQGFPDSVLFWKAMEEEQPKLILLDIMLPVDDGLT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R       +P+I  +   +    +   D G DD + KP    E+++R+ A+ RR 
Sbjct: 61  ILKSLRSNGMTKDIPVIMTTAKGTEFDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRT 120

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          + +        G+   L  +E  +L  LM N G+   + ++   +
Sbjct: 121 SNQEQETHLTIKNLSLDAKNYTVRNNGQKIELTLKEFDLLSLLMLNPGRVFTRQELLDKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G      E   V+ HI  LR KL +      + + R +GY ++ 
Sbjct: 181 WGEH-FIGETRTVDVHIGTLRMKLGDASH--LIKTVRGVGYRLEV 222


>gi|297194827|ref|ZP_06912225.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720711|gb|EDY64619.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G +       +       S R D+  ++  L   G    
Sbjct: 4   ILIAEDEERIASFVEKGLRSNGFTTTVAADGDTALDHALSGRFDLMLLDIGL--PGRDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++   S++ T+   + G DD + KP    E+LARV    R   
Sbjct: 62  TVLRELRESRVTLPVVVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +    R   V G    L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTVLRSGDLGLDLRTRRARVSGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LRKKL    G + +++ R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GAERLETVRGMGYRM 218


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +   +  E    +      D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWML--PKQDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDRDADKKLIHTVRGVGYIL 220


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G+ +           +      D+  ++  L       +
Sbjct: 12  ILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLML--PDIDGM 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +RA S   P+I ++    +Q  +     G DD + KP    E+LARV A      
Sbjct: 70  VVCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAG 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +       + + ++ R+  + G    L   E  +LE  M +  +   +  + S ++
Sbjct: 130 VSRPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F    + N+VE H+S LR+K+ +      + +   +GY +
Sbjct: 190 G-FTYVGDSNIVEVHMSNLREKIGDH-ERKLIRTIYGVGYCL 229


>gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 217

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G         +   +       D+  ++  L        
Sbjct: 4   ILIVEDEVAINDLVKLNLHLVGHQCTSVFEGKSAIFAIQRESYDLIILDIML--PELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +      P I ++   SLQ+ +  F  G DD + KP    E+LARV AI RR + 
Sbjct: 62  EVIKQVNQ---TPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQK 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++   E   +++  D       G++     +E  +LE L+ NR   +++ ++   ++G +
Sbjct: 119 ASKYFEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWG-Y 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   V+ HI KLRKKL  +     + +   LGY ++ 
Sbjct: 178 DFEGDTRTVDVHIQKLRKKLSWEG---VIKTVYKLGYRLEV 215


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +      S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +       + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++ DD A ++D         G  +              S R D+  ++          
Sbjct: 1   MILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIG--MPEMDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           LE+ R +R  S VP++ ++        +   + G DD V+KP   RE++ARV        
Sbjct: 59  LEVCRALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSN 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G I V        V+     L  RE  +LE L+A     +++ Q+  AI
Sbjct: 119 GEVAEQVVMRRGVISVDPARHLCHVKDATVTLTSREMDLLERLIARPDHVMSRPQLVDAI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG  +  V +  ++SH+  LR KL      D +++   +G  +
Sbjct: 179 YGT-NVNVSDRTMDSHLRNLRSKLGKAGCADAIETVHGVGIRM 220


>gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 223

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      SS   D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R   +    P+I ++        +     G DD V KP    E+    +     
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 227


>gi|257439801|ref|ZP_05615556.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
 gi|257197710|gb|EEU95994.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
          Length = 229

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 6/226 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M  +++D A +++         G  ++ F + E       +A  ++  ++  L G  G  
Sbjct: 1   MIYIVEDDAAIRELEQYALQSSGYGVQSFETSEPFWQAMRAAEPELVILDVMLPGEDGFS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +L+  R   A  ++P+I ++   S   T+   D G DD + KP    E L+RV A     
Sbjct: 61  ILKKLRNTPALRRLPIIMVTAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N      I + +      V G    L  +E  +L  L+ N    V +  I   +
Sbjct: 121 APEEKQNVYAFHEILLDNARHSVTVNGTHIDLTYKEYSLLRLLLENTNLVVTRETILQVV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D +VE   V+ HI  LRKKL +      + + R +GY +  N
Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKLADN 223


>gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 227

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+          G  +    S E      ++A  DV  ++  L   G   LE
Sbjct: 5   LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWML--PGMDGLE 62

Query: 63  LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           + R +     + VPL+ ++        +   ++G DD V KP+  R + AR+ A      
Sbjct: 63  VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ +   G     +G   PL   E R+L  L A+ G+ +++ Q+  A++
Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR KL      D V++ R  GY  
Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  +      +    + S+   D+  ++          L
Sbjct: 16  ILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 74  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 134 QNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 194 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 242


>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G       S             D+  ++           
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVM--MPELDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR   
Sbjct: 62  ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTAG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      +    +      + +   L  +E  IL  L+ +  +  ++ QI ++++G +
Sbjct: 122 GRSAIRAARLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
               EE  V+SH+  +R+KLR       + + +   +GY  +
Sbjct: 181 LADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G S+    S      +      D+  ++           
Sbjct: 9   ILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVM--MPEMDGW 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ R +R  SQ+P++ ++     +  +   +SG DD + KP +  E+ AR+ A       
Sbjct: 67  EVCRRLREFSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 A  G I +    R+  V+GE   L   E  +L  L  + G  +    +   ++G
Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   + + ++ +I  LR+K+  +      + ++  +GY +
Sbjct: 187 -HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 233

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +         G  +    + +  +    S   D+  ++  L   G+  L 
Sbjct: 5   LVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWML--PGQSGLA 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +  R  S+    P+I ++        +   D+G DD + KP    E++AR+ A+ RR 
Sbjct: 63  LAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLRRK 122

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +       R+    R      +   +   E R+L +LM +  +  ++ Q+   +
Sbjct: 123 APEALDSAVELGVLRLDPSTRRVARGEQEVKIGPTEFRLLHFLMTHPERVHSRAQLLDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 183 WGDH-VFIEERTVDVHVKRLREALAPVACSTMIETVRGAGYRL 224


>gi|326329444|ref|ZP_08195768.1| DNA-binding response regulator [Nocardioidaceae bacterium Broad-1]
 gi|325952770|gb|EGD44786.1| DNA-binding response regulator [Nocardioidaceae bacterium Broad-1]
          Length = 224

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G  +             ++   DV  ++          +E
Sbjct: 2   LVVDDDKAVRESLRRSLEFNGYVVALAGDGAEALAGIANHGPDVVVMDVM--MPRLDGIE 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +RA     P++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 60  ATKALRAAGNDVPILVLTARDAVGDRVDGLDAGADDYLTKPFALEELLARLRALLRRAAP 119

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E         + +  R+         L R E  +LE  +    + + ++ I   +
Sbjct: 120 IGEEDEETLSFADLTMNTTTREVTRGDRAIELTRTEFTLLEMFLRRPRRVLDRSFILEEV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     N +E ++  LR+K   +     + + R +GY +
Sbjct: 180 WG-YDFPTTANSLEVYVGYLRRKTEAEGEARLIHTVRGIGYVL 221


>gi|308175669|ref|YP_003922374.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608533|emb|CBI44904.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555650|gb|AEB26142.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           TA208]
          Length = 229

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G              +    + DV  ++  L        
Sbjct: 4   IMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINL--PSYDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR HS  P+I IS        +   ++G DD + KP  +  +        R A  
Sbjct: 62  YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      E   +++F +  +   Q E   L ++E ++LE L+    K   + ++  
Sbjct: 122 EYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTGRDRLME 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   D  V++N +  +I++LRKKLR       ++S R  GY +
Sbjct: 182 KTWDT-DIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQL 225


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      SS   D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G + + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLITTIRGMGYSF 255


>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 249

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +   +    +G  +   +  +           D+  ++  L   G   L
Sbjct: 20  ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLML--PGLDGL 77

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++ R++RA S   P++ ++        +   + G DD V KP        R       + 
Sbjct: 78  QVCRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 137

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N++   G + +    R    + +   L   E  +L  L  + G+ +++ QI  
Sbjct: 138 LSEPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQ 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + G+ +    +  V+  ISKLR+K  +       + +    GY  
Sbjct: 198 RLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 242


>gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 222

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D        +G  ++   +        S  R D+  ++  L   G    
Sbjct: 4   ILIVEDDETLRDLLKRYIKSEGYEVDEAENNFEMRKKLSKERYDLVLLDIMLP-DGLSTD 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ELP I   + ++ +I +S   +    +   + G DD V KP + RE++AR+ A +RR+  
Sbjct: 63  ELPEIKVLYPKLGIIIVSAKDNDSDKIYGLEIGADDYVTKPFNPREVVARIKAFFRRISG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G +++F D    ++  ++     +E  IL  L  N     ++ +I   ++   
Sbjct: 123 EREVIKFGQLQIFCDDYLVKLNDKIIDFTAKEFEILCLLAKNPNVVFSRERILDIVW--K 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE + + VV+ HIS +R KL    G D + + R +GY  +
Sbjct: 181 DEFISDRVVDVHISNIRNKL----GKDSIITVRGVGYKFN 216


>gi|302559197|ref|ZP_07311539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302476815|gb|EFL39908.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 240

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +++        +G  +               +R DV  ++      G   L+
Sbjct: 6   LLAEDDRAIRNALERALTLEGYRVTAVADGVEALAQAHRSRPDVLVLDVM--MPGIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 64  VCRVLRAEGDSTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRAAP 123

Query: 122 SNNRAETGPI----------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                                     R+    R          L R E  +LE L+ N G
Sbjct: 124 VPEPVREPAEEPKPDTSGRFVEAAGLRMDPQARRAWRGRRELELTRTEFELLELLIRNAG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  + I+  I+G +D       +  ++  LR+KL +      + + R +GY +
Sbjct: 184 VVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDDPGAPQLIHTVRGVGYVL 237


>gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIML--PGLNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A    R+
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G +RV +  R   +  +   L  +E  +LE L+   G+ V+K +I   ++
Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE ++S LR+KLR       + + R  GY ++
Sbjct: 181 D-FAYEGDPNIVEVYVSALRRKLRA----GLIRTVRGAGYRLE 218


>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 242

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G + E            ++    D++ ++  L   G   
Sbjct: 7   ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVML--PGIDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R  R H+  P++ I+        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 65  LEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A    +               + G +  L  RE  +L  L+A+    +++ Q+  
Sbjct: 125 PLAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
             Y    +   E  V+SHI  LR+KLR  +  G D + S   +G++ D
Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFD 232


>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
 gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
 gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
 gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
          Length = 260

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD          +  + G  +   +       +      D+  ++           
Sbjct: 3   ILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIM--MPKIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 T   +        E +          L   E R+L YLM N G+ +  +QI S 
Sbjct: 121 DVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELTPLEFRLLYYLMKNAGRILNVSQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+         V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFE 225


>gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +E  N  +           D+  ++  L        
Sbjct: 4   ILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLML--PEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVREEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSNVHKNDVIEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 REIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 233

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   +  E    +   +R D   ++      G    E
Sbjct: 9   LVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVM--MPGMDGFE 66

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++   +++  +     G DD V KP    E++ R+  I RR K 
Sbjct: 67  LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +  +  +    G +  L   E  +L YLM N    V+K +I   
Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 187 VW-HYDFGGDGNVVESYISYLRRKI-DTQEPQLIQTVRGVGYVL 228


>gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 246

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ + I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 16  LLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVML--PDMDGF 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
            + R +R      P++ ++    +   +     G DD V KP         I A +   +
Sbjct: 74  TVARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++       + +  D  +    G    L   E ++L YLM N G+ V+K QI   
Sbjct: 134 ATQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK------LGFDPVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+              + ++R +GY +
Sbjct: 194 VW-EYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYML 242


>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 234

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+ +      +      ++ R D+  ++          L
Sbjct: 5   ILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVG--MPEFDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ +S        +   + G DD V KP   RE++ARV  I RRL  
Sbjct: 63  DVCREIRKGSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRRLSP 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A+ GP         +  +       G    L   E  IL   +        + Q+ 
Sbjct: 123 RNGEAKAGPSALAQGGLLIDPEQHVASFAGTPLKLTAIEFGILRAFLTRPTSVFNREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A Y   +  V +  ++SHI  +R KL      + +++   +G+ +
Sbjct: 183 RAAY-QLNIQVSDRTIDSHIRNIRAKLAALSCDNVIETIHGVGFKL 227


>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
 gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
          Length = 221

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +           G                     D+  +   L+      
Sbjct: 1   MILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWVRQYNPDLILL--DLMLPNRDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R+ S +P+I  +        L   + G DD V KP   RE++ARV  + RR +
Sbjct: 59  LDIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRRFQ 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +     P++V  D     V      L   E ++L Y   + G+  ++ Q+ + IY  
Sbjct: 119 HTPSHTTRSPLKVDPDKMQTLVDDTPVMLTPAEFQLLCYFNQHHGQVFSRDQLMNRIYS- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               V +  ++SHI  LRKK++      D + S   +GY  +
Sbjct: 178 DGRVVTDRTIDSHIKNLRKKVQAVNDQYDWIKSVYGVGYRFE 219


>gi|311033061|ref|ZP_07711151.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 232

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++    +++        +G  +      +  + +    + D   +   L        E
Sbjct: 12  LIVESDQEIRNLLRTNLEKEGYEVLEAADGKRAKKMI--PQLDPCILLLDLSLPKISGEE 69

Query: 63  LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R +R    S +P+I IS        +  F  G DD V KP    E++ R+ A+ RR  
Sbjct: 70  ICRWVRNDLKSLMPIIIISGKTEESDIIKGFKLGADDYVVKPFRPAELMVRIEAVLRRTA 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +       +     +  + G    L + E ++L + M N  + + + QI ++IY  
Sbjct: 130 ARCGKLSFTGFTLKPAKGEALINGSPLNLTKFEFKLLHFFMQNSDQVLTREQILNSIYEH 189

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ V +  ++ HI  LR+K++     D + + R +GY  
Sbjct: 190 HEKMVSDRTIDVHIKHLREKIKMYTPKDYIQTVRGMGYKF 229


>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
 gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
          Length = 237

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E      +    D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R    +P+I ++   +    +   + G DD V KP  +R               
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRDI 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V       +  N     G + +  D    E  G+   L  RE  +L YL ++ G+ + + 
Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +    +G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGY 229


>gi|114800395|ref|YP_760884.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740569|gb|ABI78694.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 227

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G +++   + E    L  +   D   ++      G   +
Sbjct: 3   ILIVEDEPKTIAYLQRGLTEQGYAVDTAANGEDGLHLALTGEYDAIVMDVM--MPGLDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++    +   L    +G DD + KP    E++AR+ AI RR + 
Sbjct: 61  LVLQSLRISKDTPVIFLTARDKVDDRLRGLGAGADDYLVKPFSFLELVARIQAITRRGRT 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +    R          L  RE  +L  L   R + V+KT I   ++ +
Sbjct: 121 RETTLIQVADLHIDLVSRRAIRGARRLNLTAREFSLLAALARRRSQIVSKTAIAELVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 -NFDTNTNVVEVAIKRLRSKLEEPGEIRLLHTVRGMGYVLE 220


>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
          Length = 237

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E      +    D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R    +P+I ++   +    +   + G DD V KP  +R               
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V       +  N     G + +  D    E  G+   L  RE  +L YL ++ G+ + + 
Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +    +G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGY 229


>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
 gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
          Length = 232

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +G  +          ++  +    +  ++          +
Sbjct: 6   ILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVM--MPTMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R IR    +P++ +S   +    +    +G DD + KP            ++     
Sbjct: 64  EVCRRIREKFNIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V  N+ +   + +    R   + G+   L + E  IL  +  NR +     +I
Sbjct: 124 FNQVPSEVHENKIQIRGLEIDELSRTVMLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWRERAHE-SNNTVMVHIARLRNKIEENPKESTIIQNVWGVGYKIE 231


>gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 261

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 95/234 (40%), Gaps = 16/234 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D  L+ +        +  S+           L       +  ++  L       
Sbjct: 10  LIMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVL--DDGNG 67

Query: 61  LELPRIIR---------AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            +L R+IR           + VP++ +S     +  L+ F +G DD + KP    E+  R
Sbjct: 68  CDLCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFR 127

Query: 112 VAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + +I  R + +S    E G +++    R+  V      L  +E  +L  L ++ G+  ++
Sbjct: 128 IKSILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---FDPVDSKRFLGYSID 221
            ++   ++G +        V+ H+++LR KL         + + ++   GY ++
Sbjct: 188 EELLERVWG-YSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLE 240


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    S +      ++   D+  ++  L   G+  +
Sbjct: 4   ILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVML--PGKSGV 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           +L R +R   +++P+I I+        +   + G DD V KP   RE             
Sbjct: 62  DLTRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRRLD 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +  K      + G + +  D    + QGE+  L  +E  +L Y+    G+ + + 
Sbjct: 122 KQQEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEYELLAYMADREGRVLDRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I   ++G      +  +V+ H+S LR K+ +       + + R  GY  D
Sbjct: 182 TILHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKHPVHLKTVRGFGYRFD 232


>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 236

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        D   + G  +      +  +   D++ I+           
Sbjct: 4   ILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIM--MPKIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR   ++P+I +S        +   + G DD + KP +  E++ARV A  RR   
Sbjct: 62  HLVKKIREKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++  +                  +        G   PL   E +I+ YLM + G+   K
Sbjct: 122 YHSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTK 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            QIF  ++       ++N +  HIS LR K+ N     + + + R LGY  ++N
Sbjct: 182 KQIFEYVWDEP-FYGDDNAIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNFN 234


>gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 77/231 (33%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G  +    +        +     +      ++       
Sbjct: 6   ILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYMNDH---IDLYILDIMMPYMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV----------VNKPIHHREILAR 111
           EL   IR HS  P++ ++   + +     F  G DD           + +          
Sbjct: 63  ELCEQIRKHSNAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAMLCRFMV 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  ++      +   IR+        V+GE   +   E ++L ++  +R +  +  
Sbjct: 123 YQGKQAEIEKRYRILQIRDIRIEERDEAVYVKGEKIAMTDLEYQLLHFMATHRNQTFSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F +++         N +  HI  +RKK+         + +    GY  +
Sbjct: 183 ELFVSVWNEPYFTSANNTLMVHIRNVRKKIEEDARNPKYIKTIWGKGYRFE 233


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +      S+   D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +       + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 231


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +            + +   ++  L       +
Sbjct: 4   ILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLML--PEMDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            + + +R      P+I ++        +   + G DD + KP   RE++        R  
Sbjct: 62  TVLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQ 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K          + +    +    +  V  L  RE  +L Y     G+ + +  I
Sbjct: 122 VSTDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +A++G ++   E  +V+ HIS LR K+  N      + + R  GY
Sbjct: 182 LTAVWG-YEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGY 226


>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 239

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +   +      +    L +  +  +  ++  L       +
Sbjct: 8   ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWML--PVYDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            + R IR  S VP+I ++   S        D G+DD + KP          R +L R+  
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + ++  V +   E GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY---SIDWN 223
             ++G +D   + N V+ +I  +R K+ N      + + R LGY    +D N
Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCLRKLDDN 235


>gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 241

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D         G  +      +  + L  +    +  ++  L   GE  L
Sbjct: 9   ILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLML--PGEDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  +
Sbjct: 67  TLCRDLRARSSLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANL 126

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  E  P R+  D            +  G    L   E  +L+  +    + +++ Q+
Sbjct: 127 MPDSQEELPERLHFDHWQLDLARRELVDEHGVAISLSTAEFDLLKVFLERPKRVLSRDQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                G   +A +   +++ +S+LR+KL  +    + + +    GY  
Sbjct: 187 LDMARGREAQAFD-RAIDTLVSRLRRKLEVDPKKPELIKTVWGGGYMF 233


>gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +  G    F      ++     +       +   D+  ++  L        E
Sbjct: 7   LIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIML--PKMNGYE 64

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R IRA    +P+I ++     +  +   + G DD V KP   RE+LAR AA  RR K 
Sbjct: 65  ICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLARAAAFLRRRKG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E G  ++          G+   L  +E R+LE+     G+ + + QI   ++G 
Sbjct: 125 HAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGN 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            D  V +  V+  ++ LR K+  N      + + R +GY  +
Sbjct: 185 -DIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFE 225


>gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43]
 gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43]
          Length = 223

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G SL    +           + D   ++  L   G    
Sbjct: 3   LLVVEDDERIWQFLFRGLSAEGYSLTWEANGRAGLETARREQFDAIILDLML--PGMDGR 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA      ++ ++   +    +     G DD ++KP    E+ AR+  + R L 
Sbjct: 61  EICRRLRAEGVSTKILMLTALETTADLVKGLRMGADDYLSKPFAFDELTARLEVLTRGLP 120

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +            ++ +     E  G    L   E  +LE LM  RGK V + +I   +
Sbjct: 121 ATRQPPHILSAGLLQLDTAAVQSEFDGVPVALTSLEHGLLELLMEERGKVVTRARILKRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D+    NV++ ++ +LR KL++    D + + R  GY +D
Sbjct: 181 WGT-DQDPLTNVIDVYVRRLRSKLKSAGAPDMITTVRGRGYRLD 223


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +              + + D+  ++          L
Sbjct: 7   ILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVM--MPRMNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +R  + VP+I ++    +   +   + G DD + KP   +E+ +R+ AI RR   
Sbjct: 65  QVCQTLRESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTVP 124

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E GP+R+ +  R   + G+   L   E  +L+ L++  G+ V++
Sbjct: 125 GKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVSR 184

Query: 171 TQIFSAIYGLF-DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + I   ++G   +   +  VV+ ++S+LR K+ +     + + +   +GY  
Sbjct: 185 SDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGYFF 236


>gi|153952701|ref|YP_001393466.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853372|ref|YP_002470494.1| hypothetical protein CKR_0029 [Clostridium kluyveri NBRC 12016]
 gi|146345582|gb|EDK32118.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567096|dbj|BAH05080.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  +             ++ + D+  ++  L        
Sbjct: 4   ILIIEDDLSIAELQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIML--PKINGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+    +P++ +S        +  F  G DD + KP    E++ARV +  +  + 
Sbjct: 62  SILRSIQDKKDIPVLLVSAKKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQNYER 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++      +       +  D R   V G+   L ++E  IL Y+  N  +   + ++F
Sbjct: 122 IKSKFNLKHNKLIIRGLEILKDSRQVFVNGKEITLAQKEFDILLYMAENPNRVFNREELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             I+GL     +   V  HI ++R+K+         +++    GY +
Sbjct: 182 EKIWGLG-SMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRL 227


>gi|26990850|ref|NP_746275.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985860|gb|AAN69739.1|AE016610_5 transcriptional regulatory protein KdpE [Pseudomonas putida KT2440]
          Length = 231

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ R++  
Sbjct: 65  QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S   A  GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTLDGVEVALTRKEYALLAILAGHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHAE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230


>gi|329577164|gb|EGG58634.1| transcriptional regulatory protein WalR [Enterococcus faecalis
           TX1467]
          Length = 234

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        DG  +E F   +      ++ +  ++ ++  L        
Sbjct: 5   ILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFVLAVLDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +  R     P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  QMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N++            +   + +       ++ GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +F  I+G        N V +HI +LR+KL+        + +   +GY ID
Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID 234


>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
 gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
          Length = 256

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59
            ++++D   + +            +      +         + D+  ++  +     G  
Sbjct: 31  ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGID 90

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                +   A + +P+I ++        +   D+GVDD + KP   RE+++RV A+ RR 
Sbjct: 91  FARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRRT 150

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAI 177
            +   +       +  +     V      +     E R+L + + +  +   + QI  A+
Sbjct: 151 GIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDAV 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  ++E  ++ HI +LRK L        + + R  GY  
Sbjct: 211 WG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 252


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++                 DV  ++  L       L
Sbjct: 4   ILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLML--PKLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   + P+I I+   S+   +   D G DD + KP    E+LAR+ AI+RR++ 
Sbjct: 62  EVCRRLRQEKETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  +        F D       R  +  G+   L +RE  +L  L+ N+   + +  + +
Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++  VE NVV+ +I  LR K+  +     + + R  GY +
Sbjct: 182 KVWG-YETEVETNVVDVYIRYLRNKIDTEGEDSYIQTVRGTGYVM 225


>gi|229161727|ref|ZP_04289706.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228621694|gb|EEK78541.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 215

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++       +  + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKVDLAILDWM--MPKQSGIA 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDVKINFAKNKVFKNDIELEITKTELQLIKCFLQHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NVIKTHRGLGYSLEE 212


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G              +      D+  ++           
Sbjct: 4   LLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P++ +S        +  F+ G+DD V KP   +E++ RV+AI +R   
Sbjct: 62  SAVREIRKTSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +        V   GR   + G+   +  +E  +  YL+ N+G  + + ++ + ++
Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++HI  LRK L    G   + + R +GY  +
Sbjct: 182 G-YDFYGDDRTLDTHIKLLRKSLGEYSGT--ITTLRGVGYRFE 221


>gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator
           [Ralstonia eutropha JMP134]
 gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia eutropha JMP134]
          Length = 224

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       +    ++   +        +    D+  ++  L   G    
Sbjct: 3   ILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVML--PGMSGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++ R +R     P++ ++    ++  +   + G DD + KP    E+LARV  +  R   
Sbjct: 61  DVLRQLRERKDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGPV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +R E G + +          G+   L  RE  +L +L    G+ +++T I S ++ +
Sbjct: 121 READRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ +      + S R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKMDDHFAPKLIHSVRGIGYVLE 220


>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 234

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   V +        +   +   N+ +    L  S++ D+  ++           E
Sbjct: 7   LVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIM--MPDIDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  + VP+I ++        +   + G DD V KP   RE++AR+ AI+RR+   
Sbjct: 65  VCKEIRKKANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRRMPAL 124

Query: 123 NNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   T   + F+                GE      +E  +L YL+ N      + Q+ 
Sbjct: 125 TNNTNTNENKDFTFSSFSILVDQREVIAHGEKLFFRPKEFDLLLYLVQNPQIVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G FD A +   V+ HI ++R +   K     + +   +GY    N
Sbjct: 185 QKVWG-FDFAGDVRTVDVHIKRIRDEF-AKHQILCIHTVWGVGYQFHIN 231


>gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 235

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +                   +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  EAMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       +G S++     E       S   D+  ++  L       L
Sbjct: 4   ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R+ S +P+I ++        +   + G DD + KP + RE++AR+ A++RR   
Sbjct: 62  TLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTS 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +              P+   +       L  +E  +L  L +N GK  +K ++   I
Sbjct: 122 PFVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G FD   + N V  HI KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYM 224


>gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 265

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         +   +     +      + + +  D   ++  L       L
Sbjct: 47  ILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGL--PDGDGL 104

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  RA     P++ +S   ++   +   + G DD + KP    E++ARV ++ RR  
Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+R+   GR     G    L  RE  +LE  + N  + + +T I   ++ 
Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVW- 223

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +E N+++ ++ +LR+KL        + + R  GY +
Sbjct: 224 EASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264


>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
 gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  +   ++ E    +  +   D+  I+           E
Sbjct: 6   LVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVM--MPVMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++    +P+I ++     +  L  F  GVDD V KP    E++ARV A+ +R  V+
Sbjct: 64  LVENLKEFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKRYSVN 123

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +    +  +     E+  LP ++  ++  L  +  +  ++ Q+   I+G+ 
Sbjct: 124 TSNIIKLNDVEFDGEKYEIRYHDEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D    +  V+ HI ++R+ L +  GF  V + R LGY ++ 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKVEV 222


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL +    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGDSG--EYIKTIYGVGYKLD 222


>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CFBP2957]
          Length = 237

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 10/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            +  R      Q+P+I ++     Q  +   D G DD V KP   +E        +  R 
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   +   N           +             L   E R+L +LM +  +  +++Q
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+  E            V +D R   ++G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  +++D A +++  I      G    G+ S   F + L +    ++  ++  L   GE 
Sbjct: 1   MIYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIML--PGED 58

Query: 60  VLELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            + + R I        +P+I ++   +    +   DSG DD + KP    E+++R+ A+ 
Sbjct: 59  GISILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVL 118

Query: 117 RRLKVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR+K      E     ++           GE   L  +E R+L  LM ++G  + + Q+ 
Sbjct: 119 RRVKKEEPTEELSAGNLYIHVGKHKVLADGEKVELTYKEFRLLCMLMESKGNVLTRDQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + I+G +D   E   V+ HI  LR+KL        +++ R +GY I  N
Sbjct: 179 TNIWG-YDFDGETRTVDVHIRTLRQKLGECGS--MIETVRGIGYRIGGN 224


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLML--PDVSGTE 62

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           + R I+A      VP++ ++        +  F+ G DD V KP   R     + A     
Sbjct: 63  VCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALARRT 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + GPIRV  D     V GE   L   E R+L  LMA  G+  ++ Q+  
Sbjct: 123 GAGRPAERPPEQVGPIRVDVDAHRAFVDGEEVQLTPLEFRLLTMLMARLGRVQSREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++      VE   V++H+ +LR+KL    G D +++ R +GY +
Sbjct: 183 DVW-EMSSEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 224


>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   + +        +G            +    +   DV  ++  L   G   
Sbjct: 6   MVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWML--PGASG 63

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           L L R  RA S+    P++ ++        +   D+G DD + KP   +E+    R    
Sbjct: 64  LSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R  +   ++   G + + +       QG++  +   E ++L YLM +  +  ++ Q+  
Sbjct: 124 RRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRAQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 184 KVWGDH-VFIEERTVDVHVKRLREALGMAGA--LIETVRGAGYRL 225


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     + +    L    + +V  ++  L        
Sbjct: 5   ILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIML--PDIDGF 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + + R H ++ +I ++        +   + G DD + KP +  E+    +       
Sbjct: 63  EICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    GP+R+  + R     G V  L  RE  +L+  + N  K + + +I + ++
Sbjct: 123 KPDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   V+ H+ +LR+K+ +       +++    GY  
Sbjct: 183 GE-DYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGYLF 224


>gi|160945120|ref|ZP_02092346.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442851|gb|EDP19856.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii
           M21/2]
          Length = 228

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++        +G  ++GF S E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRTAEPELVILDVML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAI 115
             + + +R      ++P+I ++   S   T+   D G DD +     I       RVA  
Sbjct: 59  FSILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +V  +      I++ +      V      L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEVRPDVLAFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKL 220


>gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +     +         S   ++  ++  L   G   L
Sbjct: 4   ILIAEDEPRIASFIEKGLKSHGYATTTVENAHEALSFALSDGFELLILDLGL--PGRDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   +R   S +P+I ++    +Q  +   + G DD + KP    E+LARV    R   
Sbjct: 62  EVLADLRGQGSVLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVS 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R  +V  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 IGTPPETMTMTAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL N      +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGNS----LIETVRGVGYRL 220


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++    L  + G  +E  +  E       S       +   ++      +
Sbjct: 4   LLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDST---FDLLIIDIMMPNISGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        ++   +G DD + KP  + E++AR+ A+ RR +V
Sbjct: 61  DVCRKIREKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +N            E   + + +   +    G    L  +E +IL  L+++  K  +  
Sbjct: 121 YDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            IF +++         N +  HI  LR KL         + +    GY  + 
Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232


>gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 233

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 89/226 (39%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D        + + +      +    L     ++++ I    +       
Sbjct: 5   ILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            + R IR HSQ+P+I ++    +   +     G DD + KP    E    +       ++
Sbjct: 65  SVLRRIRKHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHSQK 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V +  +      ++ PL +RE  +L  L+ N  +  ++  +   ++
Sbjct: 125 TDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + N+++ ++  LR K+  +      + + R +GY +  N
Sbjct: 185 GV-DFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQN 229


>gi|251795759|ref|YP_003010490.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543385|gb|ACT00404.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD +  +         +G  +    +      +      D++ ++  L       L
Sbjct: 4   LLITDDDSNTRTLLGHYLTREGYRVLEAQNGLEAIAVLEKQPVDLAILDVMLPI--VDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L    R +  +P+I ++    L      + SG DD V KP    EIL RV A++RR  +
Sbjct: 62  TLCEFTRKNYDIPIILLTARDQLSDKEQGYLSGTDDYVTKPFELPEILYRVKALFRRYSL 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++       + +     +     EV  LP +E  +L  L    G+  ++ ++   I+G 
Sbjct: 122 ASSDKIRLNQLIIDRKNYEIVDGEEVQMLPLKEFELLAQLAEYPGRVFSRDELIRIIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +E  ++ HI +LRK+         + + R +GY ++ 
Sbjct: 182 -DYNGDERTIDVHIKRLRKRFPETERGFVIHTIRGIGYKLEV 222


>gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
 gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
          Length = 256

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 28  ILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLPGKSGVAF 87

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 88  ARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 147

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                       +     L   E R+L + M +  +  ++TQ+ 
Sbjct: 148 PQLTEDSVSINGLRLDPATHRVAASRNGEQTQLDLGPTEFRLLHFFMTHPERVHSRTQLL 207

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 208 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 252


>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 231

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  +      +    + S  + D+  ++          L
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIM--MPKRNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ + +R  + VP++ +S        +    +G DD + KP +  E++        R + 
Sbjct: 64  EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +       +V GE   L   E  IL  L +N G+  +  +IF
Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++   D       V  HIS LR+KL     G   + +   +GY I+ 
Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231


>gi|218294733|ref|ZP_03495587.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244641|gb|EED11165.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   V +        +G+ +    S       +    R D+  ++  L     + 
Sbjct: 4   ILLVEDDPQVGELVRRYLEKEGMEVFWARSGGEALGRVFEGERPDLVVLDRGL--PDMEG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R    +  + +    + + +         D         + L        R  
Sbjct: 62  LEVLKELRELDPLLPVLLLTGRADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   GP+ +  + R   ++GE   L   E  +L  L+   G+   + ++   ++G 
Sbjct: 122 GKEGRRRFGPLELDLEARQAFLEGEPLKLSPTEMNLLLTLVQAPGRVYTREELLERVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            D    E VV+++I  LRKKL++       +++   +GY  
Sbjct: 181 PDFPGSERVVDAYIRLLRKKLKDDAQAPRFIETVVGMGYRF 221


>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIML--PGVDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ + + +    + +I ++        +   + G DD + KP +       I A +  + 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++             +    + E    +    + D+S I   ++       +
Sbjct: 7   LVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQK-DISLIILDVMMPKMDGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLKV 121
           + + IR +S+VP+I ++     +  L  F+ GVD+ ++KP      +    A + R ++ 
Sbjct: 66  VCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSIQT 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E G I +     + ++      L  +E  +L Y + NRG  +++ +I + ++  +
Sbjct: 126 LDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVW-NY 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   +++H+ KLR K+ +K   D + +   +GY  + 
Sbjct: 185 DYFGDARTIDTHVKKLRSKMGDKG--DYIKTIWGMGYKFEV 223


>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 239

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D++ +   ++      +
Sbjct: 14  ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDVMMPNMSGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 73  EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 132

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 133 QVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEIFE 192

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 193 RVW-QQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 238


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       
Sbjct: 64  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 221


>gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 246

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +   +S             DV  ++  L   G   +E
Sbjct: 15  LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLAL--PGIDGVE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR +  
Sbjct: 73  VCRQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTV 132

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             GP+ +   GR   +  E   L R E  IL  L +      ++
Sbjct: 133 ATPISAATAADEPPPRAFGPLAIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSR 192

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            Q+  A++G       E++V+ HI  LR+KL  +      V + R +GY +
Sbjct: 193 RQLLEAVWGDS-WGGNEHLVDVHIGHLRRKLADDPADPRYVITVRGVGYRM 242


>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
 gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
 gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
 gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas aeruginosa PA7]
 gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++ A        +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225


>gi|119716238|ref|YP_923203.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536899|gb|ABL81516.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 223

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG              L      D+  ++  L   G    
Sbjct: 4   ILIVEDEERIASFLAKGLRADGHVTTCVADGREGLDLALGGDVDLVVLDIGL--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R   S VP+I ++   S+  T+   + G DD + KP    E+LARV    R+  
Sbjct: 62  EVLDQLRSQGSTVPVIVLTARDSVGDTVSALEGGADDYMPKPFRFAELLARVRLRLRQSA 121

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  ++G +++    R   V+     L  RE  + E  M N G+ +++ Q+  
Sbjct: 122 DAGGASREDVLQSGRVKLDVRTRRAVVEDRQVDLSAREFSLAEIFMVNAGQVLSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G+ D     NVV+ ++  LRKKL        + + R +GY  +
Sbjct: 182 HVWGM-DFDPGSNVVDVYVGYLRKKLGADT----IATVRGMGYRFN 222


>gi|312863869|ref|ZP_07724107.1| putative sensory transduction protein RegX3 [Streptococcus
           vestibularis F0396]
 gi|311101405|gb|EFQ59610.1| putative sensory transduction protein RegX3 [Streptococcus
           vestibularis F0396]
          Length = 217

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +           L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGHEVFEAGDGHEALDLFYREMPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++ +      L  F    D    +      +L        +   
Sbjct: 61  EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLRVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942]
 gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942]
          Length = 236

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   +      +   +G+  +   ++ +         + D+  ++  L     +  
Sbjct: 9   LIIDDEQEILALIKTVLVKEGIENVITSSTAKDGFTQFQQKQPDIVLLDIML--PDGEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV         
Sbjct: 67  DVCKQIRELSNVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRANY 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   +++N  + GP ++     +    GE   L  +E ++++Y + N    ++K  +++
Sbjct: 127 SQSKGIADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLYN 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A++G  D    +N +  HI +LR+K+  K    D + + + LGY  
Sbjct: 187 AVWGE-DSFGFDNTIMVHIRRLREKIETKPSKPDYLVTVKGLGYKF 231


>gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
          Length = 235

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +    ++G ++E  ++L            DV  ++  L        
Sbjct: 10  ILVVEDDLNLRLTLVDNLEEEGYAVEAASTLAEARAKVRGTAFDVVVLDLML--PDGDGY 67

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            L R + +A +   ++ ++        +  F+ G DD V KP   R     I A      
Sbjct: 68  TLCRELRQAATSSRVLMLTARSLEDDVVKGFEVGADDYVPKPYRLRELLARIRALARRGA 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +            +  R     G+   L R E  +L +L+ + GK + + QI S+
Sbjct: 128 GAPVSTEVLTFDRFRVDLASRRILNATGQALELTRTEFDLLVFLLRHAGKALTRDQILSS 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           ++G  D  V+ + V++ +S LRKKL         + S R +GY +D
Sbjct: 188 VWGE-DVVVDGHTVDNFVSNLRKKLEWTSTSRFEIRSVRGVGYRLD 232


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++            +++         +  +    D++ I+  L       +
Sbjct: 3   ILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGL--PEISGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R +  Q P++ ++     Q  ++  ++G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S   + +     + +  +   +      L   E   LEYL  N GK V+KT++   +Y 
Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKK+        + + R  GY  
Sbjct: 181 Q-DFERDSNVIEVFIGRLRKKIDPDNQLKAIVTVRGQGYRF 220


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + D         G  +         + L      D+  ++  L    G  +
Sbjct: 5   ILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFTI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R       +P++ ++        ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 65  CQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRAD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A    I  +       +  +    G++  L R E  +L  L+   G+ V+ ++I 
Sbjct: 125 RIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 KEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRNPRYIKTVYGAGYCLE 231


>gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
 gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
          Length = 232

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G      +S        ++   D+  ++  L    +  L
Sbjct: 6   ILIIEDEEPIADLLAYGLAMEGFETRTASSGAAGFRELAAFHPDLLLLDWML--PDQSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
           ++ + +     +P+  I+    +   +   + G DD + KP                   
Sbjct: 64  DICKKVTTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A    R            I + ++ R     G    L  +E  +L  +  +RGK   +++
Sbjct: 124 ANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRSE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   ++G +D   +   V++HI +LRKKL      D + +   +GY  + 
Sbjct: 184 LLDLVWG-YDFMGDTRTVDTHIQRLRKKLD---AGDLITTVFGIGYKFEK 229


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   D       + G  +E   +    + L      D+  ++  L   G    
Sbjct: 3   ILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVML--PGLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L +++R  S   P++ ++   +++  +   + G DD + KP  + E+LARV  + RR  
Sbjct: 61  QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +    R    QGE   L  +E  +L  L++ +G+ +++ QI S ++ 
Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +   + NVV+  I +LR K+ +      + + R +GY +D 
Sbjct: 180 QMNFDSDTNVVDVAIRRLRAKVDDPYPLKLIHTVRGMGYVLDV 222


>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 230

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G      +       + S     +  ++       +   
Sbjct: 5   ILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVM--MPKKDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 63  EVCREIRQKSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDN 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           SN   +               + +V G    L ++E  IL  L  N GK  ++  +  ++
Sbjct: 123 SNEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDSV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G ++   +   V++HI +LR K+         + +   +GY  + 
Sbjct: 183 WG-YEYFGDARTVDTHIKRLRAKIDISDKISWDIKTIWGVGYKFEV 227


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +  S++     E      + A  DV  ++       +  L
Sbjct: 3   ILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIM--MPKKDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  +  VP++ ++   S++  +   D+G +D + KP    E+LAR+  + RR +
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +         V  D       G+   L  +E  +L Y++ N+G  +++ ++   ++ 
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 180 NYDYAGGSNVIDVYIRYLRKKIDEPFEEKLIHTVRGAGYVL 220


>gi|108760068|ref|YP_634130.1| DNA-binding reponse regulator [Myxococcus xanthus DK 1622]
 gi|108463948|gb|ABF89133.1| DNA-binding reponse regulator [Myxococcus xanthus DK 1622]
          Length = 231

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +  G +      G  +           +      D+  ++  L   G+   
Sbjct: 9   ILVVEDDAPIAAGIVRGLKLAGFQVVLATDGVLALEMAEREHPDLVVLDLNL--PGQDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL    R   +VP+I ++    L+  L  F  G  D + KP    E++AR+ A     + 
Sbjct: 67  ELLEAWRFRLRVPVIVLTARQELEARLRSFGLGAVDYLPKPFWMEELVARIRARLLLQEE 126

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              R                        P  R E  +L YL    G+ + + QI      
Sbjct: 127 RPRRVLHWDDVSLDLDAREASREGTGALPFTRHEFDVLAYLAERPGRALTRAQIAQHAL- 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E  ++  V+SHI+++RKKL        + +   +GY  
Sbjct: 186 PPSEERDDRTVDSHIARIRKKLGPAGA--RIQTSWGIGYRF 224


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   ++           R D   ++      G     
Sbjct: 13  LVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVM--MPGMDGFG 70

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           L R +RA     P + ++   SLQ  +     G DD V KP        R  +    +  
Sbjct: 71  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 191 VW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 232


>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G S++  N              D+  ++  L   G    
Sbjct: 4   ILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   + + 
Sbjct: 62  EILKRVRDVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ++                +  + R   V G+   + ++E  +L +++ N  +   + +
Sbjct: 122 LKSKYGNENPNETFTIRGLEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGREE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F  I+G FD   +   V  HI+++R+K+  +      V++    GY  
Sbjct: 182 LFERIWG-FDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRF 229


>gi|302528854|ref|ZP_07281196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437749|gb|EFL09565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    +G S+   +        +++   D+  ++  L   G   LE
Sbjct: 9   LVVEDDLTIAASIDARLSAEGFSVTVAHDGPAAVEAEAATSPDLVVLDVML--PGFDGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R I+A   VP++ ++        L     G DD + KP   R     I A +  + R 
Sbjct: 67  VCRRIQARRPVPVLMLTARADETDLLVGLGVGADDYLTKPFSMRVLSARIQALLRRVERS 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R   G + +    R     GE   L   E  +L +          + ++ S ++
Sbjct: 127 SAAAEERIVLGDLEIDIAERRVRRGGEPAQLTPIEFDLLVHFARRPRAVQPRERLLSEVW 186

Query: 179 GLF--DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                        V+SHI  LR+KL    G D + +   +GY+++ 
Sbjct: 187 DWDVQATGAGTRAVDSHIKALRRKL----GADLIRTVHGVGYALEV 228


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   ++           R D   ++  L       +
Sbjct: 5   ILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLML--PQLDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + IR  + Q+P+I ++   S    +   + G DD + KP   +E+++R+ AI RR  
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +  +  P        +       +  G+   L   E R+L++L  N  + +++ QI 
Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G ++   +  +V+ HIS LR KL +       + + R  GY  
Sbjct: 183 EQVWG-YEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEF 228


>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 225

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       ++G+ +              + + D+  ++           
Sbjct: 4   LLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIM--MPNMDGW 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IR+ +   P++ ++        +  F  G DD + KP    E++ RV +I +R +
Sbjct: 62  ALCEEIRSFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S ++              + E+ GE+  L  +E  +L  L +  GK  ++ Q+   I+G
Sbjct: 122 ISLSQVVEAGHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +E  V+ HI ++R++   +     + + R LGY ++
Sbjct: 182 -YDYEGDERTVDVHIKRIRERFPQEASGIAIRTIRGLGYRLE 222


>gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
 gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++IDD   ++D     F  +  S++  N+      L       D+  ++          
Sbjct: 6   ILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIM--MPNLDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               ++IR  S+VP+I +S   +    L  ++ G DD + KP     ++ +V A      
Sbjct: 64  YTTCKMIRNTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKRTS 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      + +  D     + G    L  +E  IL+ L+    + + +  +   I+
Sbjct: 124 ETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +  +V++HI  +RKKL+       + + + +GY+++ 
Sbjct: 184 G-YDYYGDTRIVDAHIKNIRKKLKIP----YIRTVKGIGYTLEK 222


>gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 216

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 179 YEHFGDVRVIDTHIKNLRKKLEIP----YIKTVKGIGYKIE 215


>gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
 gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
          Length = 225

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +       + G  ++   + +   +L +S   D   ++  L   G   L
Sbjct: 3   ILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRML--PGRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
            +  ++RA    +P + +S   S++  +    +G DD + KP    E+LAR+       R
Sbjct: 61  SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R +   + +    R     G    L  RE  +LE+LM N G  V +T +   ++
Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI++LR+K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHIARLRQKIDKDHPAPLIHTVRGAGYVL 221


>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G +            +  +   D+  ++          +
Sbjct: 6   ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVM--MPNLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E    IR   ++P+I +S        +   + G DD ++KP +            R    
Sbjct: 64  ETCLKIREMKEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRRFYK 123

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    K   N      + +  D  + ++      L   E  IL  L  +RGK  + 
Sbjct: 124 FKNKQDVLYKEDENIIRIEDLTINLDTHEVKLGDTFLKLTPTEFDILSLLSKSRGKVFSI 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+ +++   +    +N V  HI K+R+K+  +      + +   +GY I+ 
Sbjct: 184 ENIYESVWNQ-EFMTSDNTVMVHIRKIREKIESDPRNPRFIKTVWGVGYKIEK 235


>gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 250

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G                   + D+  ++  L       +
Sbjct: 14  ILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQLKPDLIIMDVMLPI--MDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E  R I +   VP++ ++   +    +    +G DD + KP   RE++AR          
Sbjct: 72  EATRRIISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRVER 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+   +          G + +    R   +  +       E  +L  L  +      + +
Sbjct: 132 ASQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVFKREE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SHI  LR K+    G + + +   +GY+ +
Sbjct: 192 LLEEVWDWPDASG-TRTVDSHIKSLRHKI----GSEWIRTVHGIGYAFE 235


>gi|295103863|emb|CBL01407.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 230

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          DG  +    +             D+  ++  L        
Sbjct: 4   ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           EL ++I   H    +I ++        +  ++ G  D + KP      +  +  + A+  
Sbjct: 62  ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K + +  + G + +    +   + G+   L   E ++L     N  + + + Q+   +
Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNHRQVLTRGQLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS++R K+ +  G   + +   +GY 
Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223


>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       + G  +      E         R D++ ++  +  K     
Sbjct: 4   ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+ +  +P++ ++        L  FD G DD V KP   +E++ARV A+ RR +V
Sbjct: 62  ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N               +         LP +E  +L  L+++ GK   + Q+   I+G 
Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
           +D   EE  V+ HI +LR++L +       + + R LGY 
Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220


>gi|229018178|ref|ZP_04175051.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|228743103|gb|EEL93230.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 224

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++  +       + 
Sbjct: 13  LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 71  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++           +   + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 127 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 186 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 221


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +                  DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +        I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGKSG--EYIKTIYGVGYKLD 222


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            V+I+D   +          +G   +    + E           ++  ++  L       
Sbjct: 5   IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPL--MNG 62

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-Y 116
            E+ R +R   A + VP+I ++        +     G DD + KP   RE++AR+ A+  
Sbjct: 63  FEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     ++  + G + +  +      QG+   L R+E  +L+ L  ++G+ + +  +   
Sbjct: 123 RTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ D   E   ++ HI ++R+KL        +++   +GY  
Sbjct: 183 VWGI-DYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222


>gi|229133751|ref|ZP_04262577.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649786|gb|EEL05795.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 215

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++  +       + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++           +   + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 118 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
 gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
          Length = 222

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +  ++    + E    L       +  ++  L   G    
Sbjct: 4   ILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S  P++ +S     +  L+    G DD   +  +  +I+    A   + + 
Sbjct: 62  AVCRKIREESDTPILIVSAKVDKEDKLNGLILGADDY-IEKPYDIDIMLAKIAGIFKRRY 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +    G IRV    R          +  +E  +L  L+ N+G+ + K  +F+ I+G  
Sbjct: 121 AVDELIDGDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           D   E+  +  HI +LR+K+ +       + +   +GY  +
Sbjct: 180 DSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKYE 220


>gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 229

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G  ++                 D+  ++  L   G    
Sbjct: 3   ILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + R +R     P++ ++    LQ  L   + G DD + KP    E++ R+  I  R   
Sbjct: 61  SVLRELRRERDTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++ +  R     G+   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + ++R +GY +D
Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFDHKLIHTRRGMGYVLD 220


>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +        +G + +  ++     W  +    DV  ++  L        
Sbjct: 3   LLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIML--PELSGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R A +  P++ ++         D FD G DD ++KP     ++AR+ A+ RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +          R+    R      +   L  RE  +LE+L+   G  ++K +I S ++ 
Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +ENVVE +I  LR+K+    G   +++ R +GY +
Sbjct: 181 AH-YDGDENVVEVYIGYLRRKIDAPFGTHTIETVRGVGYRL 220


>gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 237

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++G   L   +  ++    +      L ++   D+  ++      G   +
Sbjct: 6   ILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET-DLVILDVM--MPGMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
                IR  S VP++ ++        L    +G DD + KP  +                
Sbjct: 63  RTCEEIRKVSNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKALLRRYRV 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + ++   E   +RV     D EV+G+   L   E ++L  +M   GK  +  
Sbjct: 123 YRGKKEDDEDADACLEMAGVRVHKVFNDVEVRGKKVDLSDIEYQMLLLMMKYPGKIFSAQ 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++ +++         + V  HI KLR K+         + +    GY  
Sbjct: 183 NLYESVWDEPYFYTCNSTVMVHIRKLRVKIEENPQEPRLIQTVWGKGYRF 232


>gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D  I+    +G       +  +   +  S+  D+  ++  L        +
Sbjct: 5   LVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLML--PDMDGEQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  + +P++ +S   S    +     G DD + KP   RE++ARV AI RR   S
Sbjct: 63  VCVSIRKTNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILRRTDDS 122

Query: 123 N-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + + S  +     GE   L   E ++L  L     +   + ++   +
Sbjct: 123 QLLADRSSYNHGHLEIDSLKQMVFCHGEPISLTPNEYKLLLMLAKYPQRHFTRNELVDKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            G +D   +   ++ H+  +R K+  +      + +    GY  D
Sbjct: 183 LG-YDFEGDVRTIDQHVKNIRYKIEPDPKNPLYIRTVYGSGYRFD 226


>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G  +E          +      D+  ++           
Sbjct: 4   ILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREKEFDIIVMDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
              + I+  S+ P++ +S        +  F+ G+DD V KP   +E++ R+  I +R   
Sbjct: 62  SACKEIKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKRSRG 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +          + V   GR   +  E   +  +E  +  YL+ NRG  + + ++ +
Sbjct: 122 TSDTENKKEIFTFKGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYLVKNRGIALTRERLIT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 DVWG-YDFFGDDRTLDTHIKLLRKSLGDYSKN--IVTLRGVGYRFE 224


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLML--PSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 238

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+      +         + D++ I+           
Sbjct: 5   ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIM--MPNINGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           EL +I+R   ++P+I +S        +     G DD ++KP            ++     
Sbjct: 63  ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L    ++     + +       + +G    L   E ++L+  M   G+   K QI
Sbjct: 123 FNTDSLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F  ++       ++N +   IS+LR+K+ +       + + R LGY  
Sbjct: 183 FENVWSDH-YYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229


>gi|163940611|ref|YP_001645495.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862808|gb|ABY43867.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 215

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++  +       + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    +G D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQTGADEYVKKPFHPGVLITRA----KKLVQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++           +   + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 118 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 220

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            L +  R   + P++ ++   +++  ++  DSG DD + KP    E+ ARV A I R   
Sbjct: 63  -LCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q +   +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D     N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 QD-DPGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R  +  +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +        I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY ID
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKID 222


>gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +D     FG++G  +E         +  +    D   ++  L   G   L
Sbjct: 5   LLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRML--PGLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA   + P++ ++   ++   +    +G DD + KP   +E+ AR+ A+ RR +
Sbjct: 63  SLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQ 122

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R     G    L  RE +ILE+ +  + + V++T +   ++
Sbjct: 123 EAEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +      NVV+ HISKLR++L        +++ R  GY 
Sbjct: 183 D-YHFDPNTNVVDVHISKLRRQLDGDGADPVIETVRGAGYM 222


>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 237

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 10/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            +  R      Q+P+I ++     Q  +   D+G DD V KP   +E        +  R 
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   +   N           +             L   E R+L +LM +  +  +++Q
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   ++G     VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLARN 234


>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 242

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L  S   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIML--PQLDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           + + IRA     P++ +S        +   + G DD + KP   RE++ARV         
Sbjct: 64  VCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRRTDK 123

Query: 113 --AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                  R + +          ++ +  +      +  L  +E  +L YL+ +    + +
Sbjct: 124 EDNRQNDRERFAEESWIINDFLIYPERHEVYKDKILLNLTPKEFELLLYLVKHPNMTLTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 ERLLERIWG-YDFGQETRLVDVHIGKLREKIEDDPKNPKCIKTIRGYGYQF 233


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +          +G   E  ++           + D+  ++  L   G   +E
Sbjct: 8   LIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVML--PGMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R +R  S VP+I ++   +++  ++  D G DD + KP         +   +      
Sbjct: 66  ICRRVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRDLA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++R     + +F    + +V GE+  L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 126 EGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G FD   E NVV+ +I  LR KL ++     + + R +GY 
Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHQKYIYTVRGVGYV 225


>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++    + +            +  ++          +
Sbjct: 5   ILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIM--MPIFDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117
           E+ ++IR  S  P+I I+        +   +SG DD + KP         I A    I  
Sbjct: 63  EVCKLIRLKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRITA 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +   + +  D    ++ G    L ++E  +L  L     K V++  +   I
Sbjct: 123 HKNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDEI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL+    ++  + +   +GY  + 
Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLQLSEQYNRDIKTIWGMGYKFEV 227


>gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 234

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   +++G        G ++    + +    +    + D++ ++          +
Sbjct: 5   IVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   + P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 63  TMTMRLREKYEFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYNR 122

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + V  D  +  V G    +   E +IL  L+ + G+  +  
Sbjct: 123 FQEALNKKEEKERSYMIGGLEVNEDRVEVLVDGRQVKMTPIEFKILLLLIKHPGRVFSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   ++AV    +  HI  +R+K+  N      V     +GY ++ 
Sbjct: 183 EIYERVWN--EKAVNTETIMVHIRNIREKIEINPKEPKYVKVVWGIGYKMEK 232


>gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 266

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+DG        G +++   + E      +    DV  ++  L   G    E
Sbjct: 41  LLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARLAEDPADVVVLDLML--PGMDGFE 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAAI 115
           + R IRA   +P+I ++        +   ++G DD V KP          R +L R    
Sbjct: 99  VCRRIRAAGDLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLRRTGGE 158

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R           G + +  DG      G V  L   E R+L  L +  G+ +++ Q+  
Sbjct: 159 PRGPDAKPGPERHGDLTIDRDGLVVSKHGTVIGLAPTELRLLLELSSAPGRVLSRQQLLE 218

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +++       +  +V++ + +LR K+ +       V + R  GY  
Sbjct: 219 SVWDQG-YLGDSRLVDACVQRLRAKIEDDPAKPVYVQTLRGFGYRF 263


>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D+  +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTT-PDIVLMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  DVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 249

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + ++   A    +G  +      +    + S    D+  ++  L   G   L
Sbjct: 6   ILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRL--PGVDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S+V +I ++        +   + G DD V KP + RE+LAR   + RR   
Sbjct: 64  QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
           +   +E    + F+       +  +F          R E  +L    +  G+ + +  + 
Sbjct: 124 AREASEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDNLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    D A  +  V+  + +LR+K+  +      + +   +GY  
Sbjct: 184 DYV-SHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVF 229


>gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170]
 gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +   N+           +  +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
            E+ R         +  ++      + +  F++G DD + KPI  + ++++V        
Sbjct: 68  CEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKALLRRFR 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +++    G I +  +       G    LPR+E  +L  L +   K   +  I   
Sbjct: 128 KDSNSNDDIVSVGNIVINREEYKIINDGTEIILPRKEFELLSLLTSKPNKVFKREVILDK 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V    ++ HI KLR+K+ +    D   + + +GY  
Sbjct: 188 VWGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 226


>gi|332671154|ref|YP_004454162.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340192|gb|AEE46775.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 264

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 19/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +       F  +G  +E            +  + D+  ++  L   G   LE
Sbjct: 31  LVVEDEPAIAQAVAHRFSAEGWRVEVAADGPSGVSAATRVQPDLVVLDVML--PGIDGLE 88

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110
           + R I+A   VP++ ++        L     G DD + KP   RE+             A
Sbjct: 89  VCRQIQAERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKALLRRQERA 148

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             AA      V +     G + V    R          L   E  +L  L  +    + +
Sbjct: 149 ARAAEIAVAAVPDPPLVIGDVTVDRAQRRVTRGDREVHLTPTEFDLLVALANSSRTVLTR 208

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + ++   D +     V+SH+  LR+KL    G D + +   +GY+ +
Sbjct: 209 ERLLAEVWDWVDASG-TRTVDSHVKALRRKL----GADLIRTVHGVGYAFE 254


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +    +      L   AR D+  ++  L        E
Sbjct: 8   LVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVML--PDVDGFE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + R +RA  Q VP++ ++   + +  +     G DD V KP    E              
Sbjct: 66  VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             + +  D       GE   L   E  +L Y + N  + +++ Q
Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++  +D A E  VV+ ++S LR+KL  + G   + ++R  GY++
Sbjct: 186 ILDAVWS-YDFAGEPTVVDQYVSYLRRKLG-RHGPSLIHTQRGFGYAL 231


>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++          G ++                + D++ I   ++       E
Sbjct: 7   LVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENK-DIALIILDVMMPRMDGWE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120
           + R IR  S+VP+I ++        L  F+ G D+ +                       
Sbjct: 66  VCRQIRKDSKVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRAYGV 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            SN   E G I +       ++ GE   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 126 DSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNVW-N 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   +   +++H+ KLRKK+  K   D + +   +GY  
Sbjct: 185 YDYYGDARTIDTHVKKLRKKMGEKG--DYIKTIWGMGYKF 222


>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +        +G  +   +       L  S R D   ++          L
Sbjct: 3   ILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDV--TMPVLGGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +RA     P++ ++    +   +   D+G DD + KP   +E+LARV A+ RR  
Sbjct: 61  DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRGG 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   A +  +R       +  R+         L R E  ILE  + N    +++  +F 
Sbjct: 121 YAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMFR 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D     N ++ ++  LR+KL        + + R +GY +
Sbjct: 181 TVWG-HDFGAGSNGLDVYVGYLRRKLEQDGEPRLIHTVRGVGYVL 224


>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
 gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N         +            +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
 gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      D+  ++  L        
Sbjct: 3   LLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNL--PELDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+    R        
Sbjct: 61  GVLQRLRAESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +  +   + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 HLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFEDKLIHTLRGVGYVLE 221


>gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELP 64
           +D   +++       ++   +   ++      +      D+  ++  L G  G  V +  
Sbjct: 2   EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLKV 121
           R       + +I I+        +   + G DD + KP   RE++ARV         L+ 
Sbjct: 62  RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLLQN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++   +   I V  D        +   L  +E  ++E L+ N+GK + +  +   ++G +
Sbjct: 122 NSRMYKFENIMVDFDQHKLFKDNKKVDLTLKEFELIEILVKNKGKIMTREYLLDKVWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   E   ++ HI  LRKK+  +      +++ R +GY  +
Sbjct: 181 EYVGETRTIDVHIRHLRKKIELDDKRPKFIETIRGVGYRFN 221


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G  +   +       + +    D+  ++          +E
Sbjct: 7   LVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIM--MPKMDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R    +P+I +S        +    +G DD V KP +  E++ARV +  RR K  
Sbjct: 65  VCMRMRKSKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYKRL 124

Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N   +            + +     +V  +   L  RE  ILE L +NRG   +  +I+ 
Sbjct: 125 NVPKKVDQEVIEVDDLMINTKNHQVKVGNKDVKLTPREFEILELLSSNRGVVFSIEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +++   D    +N V  HI K+R+K+         + +   +GY ++ 
Sbjct: 185 SVW-KQDFFESDNTVMVHIRKIREKIEENPRRPRFIKTIWGVGYKVEK 231


>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +            ++     E       +   D+  ++  L   G    
Sbjct: 4   ILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR    VP++ ++        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  ELCKRIREVKNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            R+    R   + GE      +E  +L +L  N     +K Q+F
Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  +   + + V  H++K+R+K+  N      +++   +GY  
Sbjct: 182 ETLWGE-ESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRF 227


>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 246

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +                   D+  ++  L       +
Sbjct: 21  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLML--PVMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E  + I A   +P++ ++        +     G DD ++KP   RE              
Sbjct: 79  EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDR 138

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +      ++   + G + +    R   + G+   L   E  +L  L       + + Q
Sbjct: 139 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 198

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D A     V+SH+  LR KL        + +   +GY+ +
Sbjct: 199 LLEEVWDWVD-ASSTRTVDSHVKALRHKLGAST----IRTVHGVGYAFE 242


>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 260

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E            +    D+  ++  L   G   LE
Sbjct: 40  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGL--PGMDGLE 97

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 259


>gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
 gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       ++G S++  N  E    L  +    +  ++  L  +G    
Sbjct: 3   ILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRG--GW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA     P+I +S    +   +   + G DD + KP    E+LAR+  I RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   + +          G    L  +E ++L  ++   G+ +++T I   ++G
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVV+  I +LRKK+ +      + + R +GY +D 
Sbjct: 181 I-NFDTDTNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLDE 222


>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
           [Bordetella avium 197N]
 gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
           [Bordetella avium 197N]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G ++         +    SA  D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR  +  P++ +S   S+Q  +   + G DD + KP  + E+LARV ++ RR  V
Sbjct: 61  EVLRVIRRRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGPV 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +     +    G +  L  +E  +L  L+  +G+ + +T I S ++ L
Sbjct: 121 QCQDVLRLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVW-L 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+        + + R +GY +
Sbjct: 180 MNFDCDTNVVDVAIRRLRMKIDEPYPDRLIHTVRGMGYRL 219


>gi|148545612|ref|YP_001265714.1| DNA-binding response regulator CreB [Pseudomonas putida F1]
 gi|148509670|gb|ABQ76530.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     DG S E           Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 ET    + +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RAEVVGETTLFHLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGY 219


>gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +  E      S    D+  ++           
Sbjct: 11  ILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVM--MPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            +   +R  S VP+I ++    +   +   + G DD + KP   +E              
Sbjct: 69  GVCLELRKQSDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRRFH 128

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +    +  ++     G +++  + R      +   L   E  +LE L+ + G+  ++ +
Sbjct: 129 KSDINTIIPNSLIIHVGNLKIDVNKRQVHKNEQRIRLTGIEFSLLELLVNHSGRVFSRLE 188

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I   ++G +     +  VV+ HIS+L  K+  +    + + + +  GY  
Sbjct: 189 ILQQLWGFVPGSHTDTRVVDVHISRLLTKVESDPNDPEFIITAKGSGYFF 238


>gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 233

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   ++        ++G  +E F   +       ++  D+  ++      G    
Sbjct: 5   IYVADDELHIRTLIQTFLVNEGYEVETFEDGKSLFEAFHASCPDLIILDIM--MPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S+VP+I +S   +    +     G DD + KP    E++ARV A++RR   
Sbjct: 63  ALCTAIRRESRVPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALFRRAGY 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A    +          R   V G  F +   E   L+YLM  RG+ V+K  +   +
Sbjct: 123 IRQDAGETLVCANLSLDPRSRCMTVDGAHFSVTPTEFAFLQYLMERRGEAVSKQVLLKEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + L D  ++  V +  + +LR+K R       +++    G+ ++ +
Sbjct: 183 WELPDYDLDTRVADDLVKRLRRKFREAGCRAAIETVWGYGFRLEED 228


>gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 222

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            +  S+  D+  ++  L   G+  L
Sbjct: 4   ILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGL--PGKDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           ++   +R     +P+I ++    +Q  +  F++G DD + KP         + AR+    
Sbjct: 62  DVLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     ++G I +    R  ++  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 GSQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL N    D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGN----DLIETVRGMGYRL 220


>gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 231

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        + A+ D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVIEAATGSEGLAQAALAKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   +    +D  DSG +D V KP   +E LAR+ A+ R++  
Sbjct: 65  QVLRELREWSAVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALLRQVPQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S   A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 AGGSEVTASFGPLTVDFAFRKVTLEGAEVALTRKEYALLAQLAGHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G        + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHVE-NTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 227

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+          G  +    S E      ++A  DV  ++  L   G   LE
Sbjct: 5   LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWML--PGMDGLE 62

Query: 63  LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           + R +     + VPL+ ++        +   ++G DD V KP+  R + AR+ A      
Sbjct: 63  VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ +   G     +G   PL   E R+L  L A+ G+ +++ Q+  A++
Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR KL      D V++ R  GY  
Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      +              D+  ++  L   G    E
Sbjct: 6   LVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIML--PGLNGFE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           +   +R +    P+I ++   + +  +     G DD + KP    E            ++
Sbjct: 64  ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++ +      G + +F +  +  + GE  PL  +E  +L YL+   G  V +  
Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 184 LMNIVWG-FDYIGGQRTVDVHVSSLRKKLELGQQSVQIESIRGVGYKL 230


>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
 gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
          Length = 234

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   ++           R D   ++  L       +
Sbjct: 5   ILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLML--PQLDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + IR  + Q+P+I ++   S    +   + G DD + KP   +E+++R+ AI RR  
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +  +  P        +       +   +   L   E R+L++L  N  + +++ QI 
Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G ++   +  +V+ HIS LR KL +       + + R  GY  
Sbjct: 183 EQVWG-YEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEF 228


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+ +            +  ++      G    
Sbjct: 4   ILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  + +P++  +      + +    +G DD + KP    E++       R    
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     +  + +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228


>gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      G++G  ++  ++      L +    D+  ++  L   G   L
Sbjct: 3   LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGML--PGIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 61  AVLAALRQSRQTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 120

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    E   +R+               G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 121 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 VWDM-NFDSETNVVEVAVRRLRLKLDAPFEQPLLHTVRGMGYVLE 224


>gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 235

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +      +  D G  +E  +       +  ++  D   ++  L  K    L 
Sbjct: 13  LVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEK--DGLT 70

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           L +  RA     P + +S    +Q  +    +G +D + KP    E    +  +      
Sbjct: 71  LLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQTN 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + +    R     G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 131 AEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 191 D-YNFDPQTNVIDVHISRLRAKIDKEFAEPLLQTVRGAGYRL 231


>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +              + + DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I      +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGASG--EYIKTIYGVGYKLD 222


>gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +    ++  ++         S   D+  ++  L       
Sbjct: 6   LLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVML--PDRSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
            ++  +IR  +  P+  ++   +    L  F  G DD + KP +      R         
Sbjct: 64  FDICPLIRETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +        + G I++ +   +  V G+   LP +  ++L +L  +  +  +K+Q++ 
Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G      E+N V  HI KLR+K+  N      + + R LGY  
Sbjct: 184 HVWGEEGF-GEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGYKF 228


>gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 243

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G  +    +      L  S   D+  ++  L   G   L
Sbjct: 5   ILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIML--PGLNGL 62

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------------- 104
           E+ R +   +  +  P+I ++   ++   +   D+G  D + KP                
Sbjct: 63  EVLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVALKL 122

Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           +       ++     +          +R+          G    L  RE  +LE L+AN 
Sbjct: 123 YEARNRGASSGAVEKEKEEGVYTWNKLRLDEKRHTVHFDGHEVTLTNREFLMLETLLANM 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +++  +   + G +D   E NV++ ++  LR K+    G   + + R +GY I
Sbjct: 183 DIVLSRDTLLEKVCG-YDYIGETNVIDVYVRYLRSKIDEAYGVKMIQTVRGVGYVI 237


>gi|317484213|ref|ZP_07943142.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924562|gb|EFV45719.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 241

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A +           G SL+             +   DV  ++  L       L+
Sbjct: 12  LLVDDDAKLCGLLRDYLEGFGFSLDVAEDASSGLEKAVANEYDVILLDMML--PDMDGLD 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++  S      + +   + G DD V K    RE+LARV A+ RR +  
Sbjct: 70  VLRRLREIGSTPIVIFSAQDEEASRIVGLEMGADDYVPKAFSPRELLARVRAVLRRAQPV 129

Query: 123 NNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +              +        + G    L   E RIL  + A+ G+   +  +
Sbjct: 130 QAERKEPEEDGVVRVRGLWMDRKSMKARMDGVPMDLTALEFRILFGMAAHPGRVFTRENL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G  + +  +  V+ HIS LR+KL +       + + R +GY++
Sbjct: 190 LELAVGR-EFSRYDRSVDMHISTLRRKLGDDPHNPAYLKTIRGMGYTL 236


>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 219

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +         S    D+  ++  L   G     
Sbjct: 1   MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIML--PGLNGYR 58

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           +   +RA     P++ ++         +  D+G DD + KP  +  ++AR+         
Sbjct: 59  VCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGV 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G ++V +  R   +  +   L  +E  +LE+L+   G+ V+K++I   ++
Sbjct: 119 GAGASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE ++S LR+KLR       + + R  GY ++
Sbjct: 179 D-FAYEGDPNIVEVYVSTLRRKLRA----GLIRTVRGAGYRLE 216


>gi|207724835|ref|YP_002255232.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207739498|ref|YP_002257891.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206590060|emb|CAQ37021.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592877|emb|CAQ59783.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 222

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 4   MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE+         R  
Sbjct: 62  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 121 QRGGAQPESLLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221


>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A +++         G  +                  DV  ++  L        +
Sbjct: 2   LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLML--PEMDGFQ 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           +   +R      P+I ++     +  +   D G DD + KP   R     + A +   + 
Sbjct: 60  VLAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL 119

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + V    R  +   +V  L  RE  +L +L ++  +  ++  +   +
Sbjct: 120 APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +GL D   +   V+ H+++LR+KL       + +++    GY  
Sbjct: 180 WGL-DFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVM--MPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S +P+I ++     +  +  FD G+DD + KP     ++ RV A       
Sbjct: 64  EVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 NNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++HI  LRKKL        + + + +GY +D 
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKVDE 221


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      S+   D+  +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTT-PDIVLMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  DVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016]
 gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A     G  +    +      L       +  ++  L        
Sbjct: 7   ILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLML--PDISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +++R  S+VP+I ++     +T L+ F+ G DD V KP   ++++ARV A  RR + 
Sbjct: 65  DICKMLRKKSRVPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRRTEE 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                                  +    G    L   E  IL  L+    K   + ++ +
Sbjct: 125 EAIPLSNILSFNNGDLVLNVIKHEVRKNGITVNLTSSEYNILMTLVKYPQKTFTREELVN 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                 D    + ++++H+  LR+K+ +       + +   +GY  
Sbjct: 185 LAL-EEDFNGFDRIIDAHVKNLRQKIEDNSREPKYILTVYKVGYRF 229


>gi|121593474|ref|YP_985370.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120605554|gb|ABM41294.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 242

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G + E            ++    D++ ++  L   G   
Sbjct: 7   ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVML--PGIDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R  R H+  P++ I+        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 65  LEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A    +               + G +  L  RE  +L  L+A+    +++ Q+  
Sbjct: 125 PPAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
             Y    +   E  V+SHI  LR+KLR  +  G D + S   +G++ D
Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFD 232


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         D    +    +        + ++ DV  ++           
Sbjct: 21  ILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVM--MPYVDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E  + IR  S VP+I ++        +  F+ G DD + KP        R          
Sbjct: 79  EACQRIRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +V+      G I +        V+G+   L   E  +L +L AN G    +  +F  
Sbjct: 139 YKHRVAPPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   E N+V+  + +LR+K+         + + R +GY +
Sbjct: 199 VWG-YDYVGETNLVDVCVRRLREKVEAEPSRPRMILTVRGVGYKM 242


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S             L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  D+G ++           +      D++ ++  L       +
Sbjct: 3   ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLML--PDLDGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           E+ R +RA   + P++ ++   +++  +   ++G DD + KP    E++ARV       R
Sbjct: 61  EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + +     +    G+V  L  +E  +LEYLM N G+ + ++QI   +
Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D     NVV+ +I  LR K+        + + R +GY I+
Sbjct: 181 W-QYDLDSLSNVVDIYIHYLRDKIDRGFDRPLIKTVRGVGYKIE 223


>gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
 gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
          Length = 242

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++          +
Sbjct: 16  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPHMDEI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR    +P++ +S   S    +  F +G DD + KP    E              
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 134 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D    +E     +    L      D+  ++  L       +
Sbjct: 3   ILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVML--PKIDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R  R+     P++ I+   ++   +   D+G DD + KP   +E+ ARV A + R  
Sbjct: 61  SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G IR+         Q E  PL  +E ++LE+ + +  +  +++Q+   ++ 
Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 180 PFERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRL 221


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G    L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230


>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 231

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLN 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLI-GKGEKV 60
           +++DD  L+++      G++G S+           L   S + D+  ++  L    G  +
Sbjct: 11  LVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPHLNGLDL 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R     + VP++ ++   +    +   + G DD + KP   RE++AR  A+ RR  
Sbjct: 71  CRLLRR--EGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLRRHT 128

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +        G + + +      V+     L  +E R+LE  M N  +  ++ Q+  
Sbjct: 129 RTQTQDNSAVLRCGDLCMNTQECRVRVRDVEVDLSPKEFRLLELFMRNPRRVWSREQLIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 189 RVWG-PDFMGDSKTVDVHIRWLREKLEADPSHPEYLVTVRGFGYRF 233


>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +    S+E  E         +  ++  L G  G   
Sbjct: 13  ILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVAW 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R       +P+I ++        +   +SG DD ++KP   RE+ ARV A      
Sbjct: 73  CRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRSY 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++      G + V        +  E+  +   E R+L     N  +  ++  +   I+
Sbjct: 133 GGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHIW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G     +EE  V+ HI +LR+ L      + +++ R  GY 
Sbjct: 193 GR-QSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGYR 232


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +E  ++ +    +  + R D   ++      G     
Sbjct: 33  LVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVM--MPGMDGFT 90

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P + ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 91  LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++   +          D   +         L   E ++L YLM N    ++K++I   +
Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+  K     + + R +GY +
Sbjct: 211 W-NYDFGGDGNVVESYVSYLRRKIDTK-EPRLIHTVRGVGYVL 251


>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    + L      S++  ++ E      S A  DV  ++  +    G   
Sbjct: 3   ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFTF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R   +   + ++   D    +     F +    V            R        +
Sbjct: 63  LKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  +   I +    +       +  L  +E  +LEYL  +R + +++ QI   ++  
Sbjct: 123 VSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E N+++  I  LR+KL N      + +KR LGY I
Sbjct: 182 YDYYGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
 gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 243

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 PQEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237


>gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G  ++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTL--PVLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P++ ++    +   +   + G DD + KP    E+LARV     R   
Sbjct: 61  SVLKRLRDTHTTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDAFPLKLIHTVRGVGYVLE 220


>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response
           regulator [Arsenophonus nasoniae]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++    +   +G      +  +            +  ++  +  G G ++
Sbjct: 10  ILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGSGIQL 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   +  +    +P++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 70  IAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAILRRVS 129

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  E   +++               +   E ++L + M +  +   + Q+ + ++
Sbjct: 130 AMASDNVIEMNGLKLDPASHRVMSDATSIEMGPTEYKLLYFFMTHPERVYNREQLLNYVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ +  +E+  V+ HI +LRK L        + + R  GY  
Sbjct: 190 GV-NVYIEDRTVDVHIRRLRKALAVGGHEKMIQTVRGTGYRF 230


>gi|311744493|ref|ZP_07718293.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312112|gb|EFQ82029.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++E  +            + D   ++          L
Sbjct: 3   ILVVDDDRAVRDSLRRSLEFNGYTVELASDGAEALARTPQVQPDAIVMDVM--MPRLGGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +R A + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  DATRALRSAGNDVPILVLTARDAVTDRVDGLDAGADDYLTKPFALEELLARLRALLRRSS 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S    +  P+           RD         L R E  +LE  +    + + ++ I  
Sbjct: 121 RSAELEDEAPLVFADLSLDPGTRDVRRGDRALSLTRTEFALLELFLRRPRRVLERSFILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  +R+KL  +     + + R +GY +
Sbjct: 181 EVWG-FDFPTTANSLEVYVGYVRRKLEAEGESRLLHTVRGVGYVL 224


>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
 gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 245

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D    L  ++G  +             +    D+  ++      GE  L
Sbjct: 26  ILLVDDDKRIRDLLSRLLKENGYRVTTAAHAAEARTCLTGLEFDLIILDVM--MPGETGL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           EL   +R  S VP++ ++        +   ++GVDD ++KP   RE++ R+        +
Sbjct: 84  ELAVSLREESSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAILRRGNQ 143

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  + +     GP    S   + +    +  L  RE++IL       G  V + +I    
Sbjct: 144 QPVIVSEEIHFGPFSFNSARGELKNGEAMVRLTDREKQILSIFAEQPGATVPRHKIV--- 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  + E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 201 --GDDSGLGERTVDVQINRLRRKIETDPGNPIYLQTVRGIGYRL 242


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++    +   +G  +    +      + S    D+  ++      G    E
Sbjct: 5   LIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLM--MPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSPE 122

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +         R+  +  +  V+G V  L  +E  +LE L+ N G+ + +  +   ++
Sbjct: 123 VEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   ++ HI +LR K+ +       + + R LGY  
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGYKF 224


>gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +   A    +G ++           L    +  +  ++  L        
Sbjct: 4   ILVVEDEENVLEIVRAYLEKEGYNVYCTTQGLDGIELFKKVKFQLVILDLML--PDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RI+R  S V +  ++   +L+  ++  + G D+ + KP   RE+ ARV A++RR+  
Sbjct: 62  EVCRILRRISDVYIFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFK 121

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N  +     +          ++ +   L   E  IL  L+ N+G+ +++ Q+   ++G
Sbjct: 122 DENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           L D    +  ++ HI  +RKK+         + +   LGY  
Sbjct: 182 L-DFDGFDRTIDVHIKNIRKKIEEDTKKPKYIITVTKLGYKF 222


>gi|313905592|ref|ZP_07838954.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469539|gb|EFR64879.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G  + GF        +    + ++  ++  L   GE  
Sbjct: 1   MIYCVEDDDSIRELMVYTLRASGFEVRGFQDASAFWNIMKEKKPELVLLDIML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAI 115
           + + + +RA      +P+I  +   S   T+   DSG DD       +       +    
Sbjct: 59  ISILKKLRASPVTEDIPVIMATAKDSEYDTVIGLDSGADDYLSKPFGMMEMVSRIKAVLR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      + G I V        V      L  +E  +L+ L+ N G+   +  + +
Sbjct: 119 RSTPKKKQKLIQCGRIVVDEGKHTVTVNDRRVFLTLKEYELLKLLVENSGQVFTRDILLA 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++G  D   E   V+ HI  LR KL        + + R +GY ++
Sbjct: 179 SVWGA-DFVGETRTVDVHIGTLRTKLDECGN--MIKTVRGVGYKLE 221


>gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 269

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +           D++ +   ++      +
Sbjct: 44  ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 103 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 162

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +E   + V       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 163 EVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 222

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 223 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268


>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             S    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 121 KKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL +    + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLD 223


>gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G  +           L +  +  +  ++          L
Sbjct: 5   ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD V KP + +E+ ARV +  RR   
Sbjct: 63  SAVLKIRERKNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRRYTS 122

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  +               ++ R   V  E   L   E +I+E LM   G+     +I
Sbjct: 123 LGDIHKADDDGCITNGRLEFHTNERVLYVDKEPVRLTATETKIMELLMKYPGRVFPAEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++     A E N V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 183 YERVWNEQGYACE-NTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEK 231


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 238

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   ++           R D   ++      G     
Sbjct: 15  LVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVM--MPGMDGFG 72

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           L R +RA     P + ++   SLQ  +     G DD V KP        R  +    +  
Sbjct: 73  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +   +R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 193 VW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 234


>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +      E    +    + D+S +   ++       
Sbjct: 6   ILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEK-DISLVILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  + IR +SQVP+I ++     +  L  F+ GVD+ + KP   + +             
Sbjct: 65  ETCKTIRRYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRRGSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IRV  D  +  V G    L  +E  +L Y M N+G  +++ +I + ++ 
Sbjct: 125 TSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL  K     + +   +GY ++ +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGPKGDN--IKTVWGMGYKLEVD 225


>gi|317127238|ref|YP_004093520.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472186|gb|ADU28789.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 1/219 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       D         ++  + + +     +      L        
Sbjct: 3   ILLVEDDKTIASGLEYSLQQDHFDTVLCYDIQSAQKIINHEISSIDLCLFDLSLPDGSGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++++  S  P+I ++ Y      +   D G DD + KP   RE+L+R+ ++ RR   
Sbjct: 63  ELCKLVKQKSDTPVIFLTAYDDEVNVVMGLDMGADDYITKPFRIRELLSRIKSVLRRYNK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   I++ +        GE   +   E R+L     + G+ + + Q+   I+ + 
Sbjct: 123 QTTIIKLHNIQINTLEGKVYKNGEEIIITALEYRLLLIFANHVGQVLTREQLLERIWDVA 182

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            + V +N +  +I +LR+KL +       + + R LGY 
Sbjct: 183 GDYVNDNTLTVYIKRLREKLEDNPQKPTLIKTVRGLGYK 221


>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D            +   N  E           D+  ++  L   G    
Sbjct: 5   ILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLML--PGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQVRDQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L  +      K ++F
Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 QEIWDM-ESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRF 228


>gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 235

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G S++  +  +  + +  +    +  ++  L   G    
Sbjct: 4   ILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVML--PGADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R   
Sbjct: 62  AICRAVRKELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +        V G    L  RE  +L +L  +     +K  ++
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++ L +     + V  H+++LR+K+  +      + +    GY  +
Sbjct: 182 DRVWDL-EAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFN 228


>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 221

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +++   A    +G  +                    S +   L+       E
Sbjct: 5   LLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKI----PQASLVVLDLMLPRLSGWE 60

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R  + ++P++ ++     +  +   D G DD V KP   RE++ARV A+ RR  +
Sbjct: 61  VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSGL 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               A    +      R+  + GE   L + E  +L  L  +     ++ ++   ++G  
Sbjct: 121 KAELAFGELVIR-PREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVWGT- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           D    + VV+ HI+ LRKKL         +++ R +GY  
Sbjct: 179 DFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRF 218


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD   +           G   E     E            D+  ++  L       
Sbjct: 4   ILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHML--PDMSG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ +I+R     +P+I ++        +   + G DD + KP   RE+ AR+ A+ RR 
Sbjct: 62  LDICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRY 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + + +    GP+ +        V G+   L  +E ++L +L  +  K V +  
Sbjct: 122 QLSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+G F    +  VV+ HIS LR K+  N      + + R +GY +
Sbjct: 182 LLDHIWG-FKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229


>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V         ++   ++   + E    +      D+  ++  L    +  L 
Sbjct: 4   LVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVML--PKKDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR + 
Sbjct: 62  VVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSEQ 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      R+         + +   L  +E  +LEY M N  + + +T I   ++  
Sbjct: 122 DRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRESDKKLIHTVRGVGYIL 220


>gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
 gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
          Length = 245

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 27  MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 84

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE+         R  
Sbjct: 85  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 143

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 144 QRGGAQPESLLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 203

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 204 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 244


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       
Sbjct: 71  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 131 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 191 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 228


>gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ R++  
Sbjct: 65  QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S   A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHAE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++D        +G  +      +    +      D+  ++      GE  L 
Sbjct: 12  LVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLM--MPGEDGLS 69

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 70  ICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ +
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 190 LALLARGR-EFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G         +      ++   D++ +   ++      L
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTN-PDIALMILDVMMPNMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +++R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVVKVVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
           S        + + S   + +             L   E  IL  L ++  +  +   IF 
Sbjct: 122 SVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            ++   +  V    V  H+S LR K+     G   + +   +GY I+ 
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEV 228


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        DG                S+ + D+  ++  L   G    
Sbjct: 5   ILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLML--PGIDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  ++VP++ ++        +     G DD ++KP    E++ARV A   + + 
Sbjct: 63  EICRKIRGKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   + GP+R+        +         +E  +L +L++N     +K Q++
Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G+ D   +   V  HI++LR+K+  +      + +    GY  
Sbjct: 183 ERIWGM-DAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGYHF 228


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V         + G ++E   +     ++ +    D+  ++  L G G   +
Sbjct: 3   ILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPG-GVDGV 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R   +  P++ +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 62  RLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRPA 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V             +    R     G    +  RE R+LE+LM + G+ V +T +   ++
Sbjct: 122 VDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR+KL        + + R  GY I
Sbjct: 182 D-YHFDPQTNVIDVHVSRLRQKLDKGQDKPLIHTVRNAGYMI 222


>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 237

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 25/236 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G ++              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMV--PGLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 NNRAE------------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                                   G + + ++G +   QG    L   E R+L       
Sbjct: 125 TGTGPGAPAATGGPQDGAGGVLVFGDVEIDTEGMEVRRQGAHVGLTPTEMRLLLEFSTAP 184

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 GTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 235


>gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 216

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKLEIP----YIKTVKGIGYKIE 215


>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
 gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
 gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
 gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 233

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++  ++  F + +           D++ ++  L        E
Sbjct: 7   LVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVML--PDIDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   S    ++    G DD + KP    E++ARV A  RR    
Sbjct: 65  ILKQIRLTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFTRY 124

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N+ +                          E   L   E  IL  L  NRGK ++   +F
Sbjct: 125 NDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVISSENLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+KL       + + +   +GY ++ 
Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233


>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
 gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G      +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+       ++
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +    E   I V    R   + G    L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           G       +  ++ HIS LR KL +    +P+  + R  GY  +
Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLFN 225


>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    + L      S++  ++ E      S A  DV  ++  +    G   
Sbjct: 3   ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFTF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R   +   + ++   D    +     F +    V            R        +
Sbjct: 63  LKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRANRQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  +   I +    +       +  L  +E  +LEYL  +R + +++ QI   ++  
Sbjct: 123 VSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E N+++  I  LR+KL N      + +KR LGY I
Sbjct: 182 YDYYGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|169835992|ref|ZP_02869180.1| DNA-binding response regulator [candidate division TM7 single-cell
           isolate TM7a]
          Length = 218

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V+ G        G ++    S E      + A  DV  ++  L   G   +
Sbjct: 5   ILLVEDEPAVRQGTEQFLRQRGFTVVTATSGEEALEKFTGA--DVIILDIML--PGMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+   IR  S VP++ ++      T +  FD   DD ++KP     +  R+ A + R+  
Sbjct: 61  EVLHRIRQTSDVPVLMLTALHDEPTQIASFDELADDYMSKPFSLVILEKRIGALLRRQQS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V       G   V          G    L  +E ++L+ L+ N     ++  I   ++  
Sbjct: 121 VKKTLWRRGLASVDFAAYQGFYDGTDAHLKPKEVQLLKLLVDNPNMVWSRQAIIDKLW-R 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            DE   + V++ +I  LRKKL      D + + + +GY  + 
Sbjct: 180 DDEVPFDRVIDVYIKNLRKKL----HLDCIITVKGVGYRYEE 217


>gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   + E       + + D+  ++           
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIM--MPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----AAIY 116
           E  +IIR  +   +I ++   + Q  +  F SG DD + KP    E+  R+      +  
Sbjct: 63  EAIKIIRKLTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSNV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +      +   + +               L  +E  IL  L  N+G+    ++++  
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGKGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEK 228


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   ++  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++  +++  ++ +    L  S   D+  ++  L   G   +
Sbjct: 3   ILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWML--PGISGI 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R   +  S  P+I ++   ++  T+    SG +D + KP H  E+L R+    R  K
Sbjct: 61  ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAKK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +   GPI + ++        +   L ++E  +LEYLM N+ K   +T+I  +++ +
Sbjct: 121 GAKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                   V++  I+ LRKKL  +   D + + R +GY
Sbjct: 181 H-FDYNTGVIDVFINSLRKKLDLQKDEDYIQTIRGVGY 217


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 255


>gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++  ++    + L  +   DV  ++  L   G+   
Sbjct: 3   ILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVML--PGQDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R +RA  Q P+I ++    ++  +     G DD + KP    E+LAR+ A   R  K
Sbjct: 61  AVLRALRAVKQTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGRK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     +++    R          L  +E  +L  L   +G+ ++KT I   ++ +
Sbjct: 121 QEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 -NFDSNTNVVEVAIKRLRDKIDAPFSPKLLHTIRGMGYVME 220


>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
 gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +++            +    + +    +    R D+  ++  L    G ++
Sbjct: 6   ILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +     ++VP+I ++        +   D G DD + KP   RE+++R+ A      
Sbjct: 66  ARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRAS 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   + +               +   E R+LE+ M+++ +  ++TQ+   ++
Sbjct: 126 SVAAEKAIEVEGLCLDPVSHRISADDYPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  ++ HI +LRK L        + + R  GY  
Sbjct: 186 GA-NVYVEDRTIDVHIRRLRKALAPFDYDRFIQTVRGTGYRF 226


>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + + D       D+G  +E          +      D   ++  L   G   L
Sbjct: 7   ILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLML--PGIDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           ++ R  R+     P+I IS   S    +   + G DD V KP          + +  R  
Sbjct: 65  DICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ R L++   R +   + +    R   +  +   L  RE  +L +   N  K  ++ Q+
Sbjct: 125 AMSRNLQMDAGRLDMAGLTIDPIARAVWMNQQPIDLTPREFDLLYFFAKNPDKVFSRLQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDQVWG-YQHDGYEHTVNTHINRLRIKIEADPSEPQYILTVWGSGYKF 231


>gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        DG  +      +       +   D+  ++  L   G+   
Sbjct: 4   ILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVML--PGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    +P++ IS        +     G DD ++KP    E++ARV A   R + 
Sbjct: 62  QIVREVRKKKDIPILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARYER 121

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +  E G + +  +G    ++G+   L  +E  +L +L  NRG   +K  +
Sbjct: 122 LIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKDAL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++GL D   +   V  H+++LR+KL  +    + +++   +GY +
Sbjct: 182 FERVWGL-DAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRL 228


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D              +G +++  +          + R D+  ++          L
Sbjct: 5   ILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVM--MPQVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ RI+R  SQVP++ ++   + +  L   D G DD + KP   RE+ ARV       R 
Sbjct: 63  DVCRILRTDSQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + + +   +  + GE+  L  +E  IL  L A  G+   + QI   ++
Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           G F++ V E  V++H+  LR+KL          V++    GY +
Sbjct: 183 G-FEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRL 225


>gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-12]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++       + G  +E     +    L +S + DV  ++  L G G + L 
Sbjct: 4   LLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPG-GVEGLH 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           + + +   ++  P++ +S    +   +    +G DD V KP    E+ AR+       R 
Sbjct: 63  ILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRNRN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R+ +  G+   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 123 EAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        V + R  GY +
Sbjct: 183 D-YHFDPQTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223


>gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 216

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         +  +  ++  +       L
Sbjct: 7   IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMV--PRMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL+ 
Sbjct: 65  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLER 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 125 KAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPD 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 184 SFDVADRVIDSHIKNLRRKISEAADTGNRHEWIQAVYGVGYRFEY 228


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G+      +             D+  ++          +
Sbjct: 5   ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIM--MPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREEQHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYKK 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +E            + +D R     G+   L  +E  ILE L  N+G  ++ ++I+
Sbjct: 123 YNTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +++   D    +N V  HI+K+R+K+  +      + +   +GY I
Sbjct: 183 ESVW-KEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGYKI 228


>gi|330875500|gb|EGH09649.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S     +         ++   +  ++  L   G   +
Sbjct: 9   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASAPQLILLDIML--PGRDGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I I+        L   D G DD + KP   RE +        R   
Sbjct: 67  DICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +      ++V  +       G V  L   E R+L     + G+  ++ Q+   +Y   
Sbjct: 126 ATDPLAAKGLQVDEEHYQASFNGVVLDLTPVELRLLATFARSPGRVFSRDQLLDRLYSDH 185

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G D + S   +GY ++
Sbjct: 186 -RVVTDRTVDSHIRNLRRKLEQACPGQDQIQSLYGVGYKLE 225


>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 242

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                     +  +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGL--PDFDGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV    R  + 
Sbjct: 63  EIARRLRKTSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                           R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 123 GEVIQIGALEIH-PQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
 gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
 gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++         +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVTDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
 gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIML--PGLNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +   +RA     P++ ++         +  D+G DD + KP  +  ++AR+ A + RR 
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G ++V +  R   +  +   L  +E  +LE+L+   G+ V+K  I   ++ 
Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE +IS LR+KLR       + + R  GY ++
Sbjct: 181 -FAYEGDPNIVEVYISALRRKLRA----RLIRTVRGAGYRLE 217


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVML--PNISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R IR  ++ +P+I ++   S+   +   D G  D + KP         I A +    
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEQNSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|229012119|ref|ZP_04169298.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167311|ref|ZP_04295049.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615873|gb|EEK72960.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749207|gb|EEL99053.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 97/220 (44%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++  +       + 
Sbjct: 13  LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 71  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++           +   + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 127 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+    G + + + R LGYS++ 
Sbjct: 186 YFGEERTVDTHVRRLRKKI----GGNIIKTHRGLGYSLEE 221


>gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+      +           + D+  ++          L
Sbjct: 5   ILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIG--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  DVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSGN 122

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I V         GR          +   E  IL+ L++      ++ ++  
Sbjct: 123 EAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A YG     V +  ++SHI  +R K     G   + +   +G+ +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFLAAGGQGIIATVHGIGFKL 226


>gi|315618142|gb|EFU98733.1| transcriptional regulatory protein baeR [Escherichia coli 3431]
          Length = 240

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV       + 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +    P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWE 233


>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G   +     E           D   ++  L        E
Sbjct: 9   LIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIML--PKIDGWE 66

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           L + I   + ++P+I ++     Q  +   D G DD V KP    E    +  V      
Sbjct: 67  LCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADL 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   +       + V           +   +P +E  +L YL +   +   + Q+   I+
Sbjct: 127 LNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +    +   ++ HI ++R+KL        + + R +GY  
Sbjct: 187 G-YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227


>gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D G +++     E  ++L  +   D   ++  L       +
Sbjct: 3   ILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQFLGETEPYDAVILDLGL--PKVDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    R  +   P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLERWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L Y+M ++G+ + +T++   +Y 
Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKL----GAERIETVRGLGYRL 216


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A]
 gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS]
 gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC
           8739]
 gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171]
 gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50]
 gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271]
 gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS]
 gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A]
 gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171]
 gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli W]
 gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella
           dysenteriae CDC 74-1112]
 gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella
           flexneri CDC 796-83]
 gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482]
 gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia
           coli EC4100B]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L    A
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADISLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKCITTVVRTGYKFEGN 228


>gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +           G +     +      L      D+  ++  L        
Sbjct: 4   ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGL--PDIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + +R      P+I ++   S+   +   + G DD + KP    E+    RV      
Sbjct: 62  EVLQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ SA++
Sbjct: 122 AGADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G D V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRDRVETVRGMGYRL 218


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G +++   +    + L      DV  ++  L   G    
Sbjct: 3   ILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVML--PGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R +R   + P+I ++   S++  +     G DD + KP    E+LAR+ A   R   
Sbjct: 61  SVLRALRKVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G +++    R     G    L  +E  +L  +   +G+ ++KT I   ++ +
Sbjct: 121 QEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 -NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +           L +  + D+  ++  L       L
Sbjct: 4   ILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWML--PQVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R  S  P++ ++        +   + G DD + KP              R    
Sbjct: 62  EVLRRLRQESPTPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRRTDL 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               +    K S      GP+ +        + G+   L   E R+L  LM + G+   +
Sbjct: 122 VRQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLMRHPGRAFGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   I+G  D+ V E  V++ + +LRKKL        +++   +GY +
Sbjct: 182 SYLLDTIWG--DQFVGERSVDNAVLRLRKKLGPLGEA--IETVWGVGYRL 227


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 237

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G       + E    + SS   D+  ++          +
Sbjct: 6   ILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIM--MPKVNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------------REI 108
           E    IR   ++P+I +S        +   ++G DD + KP +               + 
Sbjct: 64  EACLKIREEREMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYKR 123

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                A    +   +N  E   I +  +  +    GE   L   E  IL  L  NRGK  
Sbjct: 124 FNNTLAKEELVVKQDNVLEIDEISINLETHEVFKDGEEIKLTPTEFDILVLLGENRGKVF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +   I+++++   +    +N V  HI K+R+K+         + +   +GY ID
Sbjct: 184 SIENIYNSVW-KQEFMQSDNTVMVHIRKVREKIEEDPRKPKFIKTVWGVGYKID 236


>gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D G +++     E  ++L  +   D   ++  L       +
Sbjct: 3   ILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGL--PKVDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R  R +   P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L YLM ++G+ +++T++   +Y 
Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I ++RKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRVRKKI----GADRIETVRGLGYRL 216


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G ++   N           ++ D+  ++  L    +   
Sbjct: 4   ILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNL--PHQDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           ++ + +R    +VP+I ++    ++  +   + G DD V KP         + AR+    
Sbjct: 62  QILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQT 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +    R  +V      L  +E ++LE LM +  + +++ Q+   
Sbjct: 122 LSPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G + +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GGNRIETVRGMGYRL 220


>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD A V           G ++           + S  R D   ++  +    G  V
Sbjct: 7   ILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGTGV 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           +   R   A +++P+  +S   S+   +   +SG DD + KP          R +L R  
Sbjct: 67  VTALRA--AGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    G + +   GR   V G+  PL +RE  +LE L  N G  + + ++
Sbjct: 125 TPAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++G +D   + NVV+  I  LR+K  +      + + R +G+ +  N
Sbjct: 185 LELVWG-YDFVADTNVVDVFIGYLRRKFESGGSPRLLHTVRGVGFVLREN 233


>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         +  +  ++  +       L
Sbjct: 4   IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMV--PRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEAADTGNRHEWIQAVYGVGYRFEY 225


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         DG  +      E    L        +  ++  L       
Sbjct: 13  IMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVML--PKLSG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  S+VP++ ++     Q  L  FD GVD+ ++KP   + ++ARV AI RR  
Sbjct: 71  FDVAREIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V       E G IR+        V G    L  +E  +L Y M NRG  +++ +I ++++
Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR K+  K     + +   +GY  + 
Sbjct: 191 D-YDYFGDARTIDTHVKKLRAKIGEKGS--YIRTIWGMGYKFEV 231


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       
Sbjct: 64  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 221


>gi|119717163|ref|YP_924128.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119537824|gb|ABL82441.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 232

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGE 58
            +++DD   ++         +G  +                 +   D+  ++      G 
Sbjct: 4   ILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVM--MPGM 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114
             LE+ R +R  +   +I ++        L     G DD V KP   RE+ ARV      
Sbjct: 62  DGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   + R     + V   GR+  V G    L   E  +L  L+   G+  ++ Q+ 
Sbjct: 122 RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D   +E VV+ HI  LR +L +       + + R +GY  
Sbjct: 182 EQVWGN-DFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227


>gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 228

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +  F   +       +   ++  ++  L       +
Sbjct: 6   ILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVEK-YNNSFNLVILDLML--PYVDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  +  P+I +S        +     G DD + KP   RE++ARV A  RR   
Sbjct: 63  EVLRQIRTVNNAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLRRYVY 122

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N       +                +     L   E  +L++ + N  +   K QIF+ 
Sbjct: 123 YNEDKHNSLLTYDKLKLDTSNYKVFKENRELNLTPIEFELLKFFLENPDRVFTKAQIFNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++   +   ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 183 VW-KNEYVNDDNTVMVHIKRLRNKIEDNPNNPKYIITVWGIGYKL 226


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++    +   +G  +    +      + S    D+  ++      G    E
Sbjct: 5   LIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLM--MPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPE 122

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +         R+  +  +  V G    L  +E  +LE L+ N G+ + +  +   ++
Sbjct: 123 IEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   ++ HI +LR K+ +       + + R LGY  
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEDDPSRPVRIITVRGLGYKF 224


>gi|88797530|ref|ZP_01113119.1| transcriptional regulatory protein RstA [Reinekea sp. MED297]
 gi|88779702|gb|EAR10888.1| transcriptional regulatory protein RstA [Reinekea sp. MED297]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         + G  +    +      L    + D+  ++  L   G+   
Sbjct: 6   ILLVEDDASLATWIADYLTNQGYDITLATNGIDAVTLIRDDQPDLVLLDVNL--PGKDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++        +   + G DD + KP+  R +LAR+  + +R   
Sbjct: 64  DVCREVRVFYHRPILIMTARLEETDEVLGLEMGADDYITKPVRPRALLARIKGLLKRELH 123

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +         +       + +  R   +  E   +   E  +L YL ++ G  V + Q+ 
Sbjct: 124 NPVPDVASDQKLRLGALVIDATARTTTLHDEPVRISSNEFDVLWYLASHAGTIVTREQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + GL +    +  ++  +S++RKKL +    D + +    GY +
Sbjct: 184 KDVRGL-EYDGFDRSMDVLVSRIRKKLGSAEHPDRIKTVWGKGYLL 228


>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 40  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGL--PGMDGLE 97

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 259


>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 239

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S    +            R D+  ++  L       L
Sbjct: 14  ILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIML--PVMDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E  + I A   VP++ ++   +    +    +G DD + KP   RE++AR          
Sbjct: 72  EATKRIVADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVER 131

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +  +   +      G + +    R   V GE   L   E  +L  L       + + +
Sbjct: 132 AKVIAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 192 LLEEVWDWVDASG-TRTVDSHVKALRHKL----GSETIRTVHGVGYAFE 235


>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 40  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGL--PGMDGLE 97

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 259


>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +    S +    L  +   D++ I+  L        
Sbjct: 5   ILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVML--PDGNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           EL ++IR     P+I ++        +     G DD V KP          +  L RV  
Sbjct: 63  ELCKLIREKYTYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRRVQH 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +   ++       + +     +  + G+   L   E  IL  L  NRGK  +  ++F
Sbjct: 123 YDGKENNTSETLMVMGLFLNKTSHECNLNGKTIKLTPTEFSILWLLCKNRGKVFSADELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G        N V   I  +R+KL +       V +   +GY I+
Sbjct: 183 QQIWGEKYFKNSRNTVMVQIRHIREKLYDTGNKPKFVKTVWGVGYIIE 230


>gi|225570827|ref|ZP_03779850.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM
           15053]
 gi|225160289|gb|EEG72908.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        D    ++  ++      +      DV  ++  L       
Sbjct: 5   ILLVDDEKDIVDLLEETLRKDAAYEIKKAHTGAEALSMCREFHPDVIILDIML--PDIDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S   ++ +S        +     G DD + KP   RE+  RV A  RR K
Sbjct: 63  LEICRQIRGFSYCSILFLSSRDDDIDKILGLSGGGDDYITKPFSPREVAFRVKAQLRRQK 122

Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++               + S+       GE   L  RE  +L Y+  N G+ ++K ++
Sbjct: 123 YQHSIPPQQEKLLPAGGLTIDSESCRVCKNGEEIELTGREFLLLSYMAENAGRIISKERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  ++G +  ++ +N +  HI  +R+K+ +     + + + + LGY +
Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHIREKIEDNPSEPELLVTVKGLGYKL 229


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 239

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   +            R D   ++      G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           L R +RA     P + ++   SLQ  +     G DD V KP        R  +       
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGERRLLHTLRGVGYVL 235


>gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            +  S+  D+  ++  L   G+  L
Sbjct: 4   ILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGL--PGKDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           ++   +R     VP+I ++    +Q  +  F++G DD + KP         + AR+    
Sbjct: 62  DVLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     ++G I +    R  ++  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 GSQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL N    D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGN----DLIETVRGMGYRL 220


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G S++   +             DV  ++  L       +
Sbjct: 3   ILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIML--PEIDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +R  +   P++ ++   +L   +   D+G DD + KP    E+ AR+ A + R  
Sbjct: 61  QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   + V +   D    G++  L  +E  +LEY+M N G+ + ++QI   ++G
Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     N+++ +I  LRKK+ +      + + R  GY +
Sbjct: 181 -YEFDGLSNIIDVYIRYLRKKIDDNFDIKLIQTIRGSGYCL 220


>gi|160935401|ref|ZP_02082783.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441759|gb|EDP19459.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 91/219 (41%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L   +G +     + E           D+  ++  L        
Sbjct: 4   ILIVEDDRDIAGNLLLLLKKEGFTAVAVGTREESLEQIRRESFDLVLLDLML--PDGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+  + +P+I ++     ++ +  F+ G DD + KP    E+++RV  + RR   
Sbjct: 62  SVCTAIKREADIPVIFLTAMGDEESVVTGFELGADDYIAKPFRPLELVSRVKNVLRRRGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +    G + V +        G+   L   E R+    +  +G+ + + ++   I+ + 
Sbjct: 122 SRSVLRAGDLLVDTVKGTVTRDGQEIILSALEYRLFLVFLNRQGEVLTRNRLLEEIWDIA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + V +N +  +I +LR K+  +    + +++ R  GY 
Sbjct: 182 GDYVNDNTLTVYIKRLRDKIEKDPAHPEIIETVRGRGYK 220


>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWML--PGTSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A    
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5]
 gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +G   E  +         +    D+  ++  L       +
Sbjct: 3   ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR K 
Sbjct: 61  TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +                      V  L  +E  +L YL+ N+ +  ++ Q+ 
Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227


>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG                   R D+  ++  L   G   +
Sbjct: 6   ILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLML--PGIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R+IR  S VP++ ++        +   +SG DD V KP    E++ARV A       
Sbjct: 64  EVCRLIRDESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      G    L   E  +L  L         +  +   ++G 
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             +A +  +V  H+ +LR K+        V  + R +GY 
Sbjct: 184 RHQA-DTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYK 222


>gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  L   +            R D+  ++  L   G    
Sbjct: 5   LLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLML--PGADGW 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA H+ VP+I +S   +    +   + G DD + KP    E++ARV A+ RR++
Sbjct: 63  DVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALLRRIE 122

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +          GP R+ +  R+     +V PL  RE  +L +L  + G+  ++ ++ 
Sbjct: 123 QLRSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPGRVFSRGELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++G       E+ V SHI++LR K+ +       + +   +GY  + 
Sbjct: 183 QRVWGAA-FDGYEHTVNSHINRLRTKIEDDPRDPRRIVTVWGVGYRFEE 230


>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    +      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEIDLVILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            + R IR  S+VP+I ++       TL  F+ G DD V KP            +L     
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     V +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYVTTVVRTGYKFEGN 228


>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E             +   D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R+     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EC4024]
 gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. EC1212]
 gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. G5101]
 gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1125]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
 gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G  +E     +  +   +  R D+  ++      GE  L
Sbjct: 6   ILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVM--MPGEDGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + R +RA  +  P+I ++        +   + G DD + KP + RE             
Sbjct: 64  AVVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRHH 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L  +++  E G   +    R+    G+   L   E  +L  L+++  + + + 
Sbjct: 124 ATPALAALHNADDVVEFGEFVLNLGQRELRRAGQPVSLTSAEFAVLSVLVSHPRRPLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR---NKLGFDPVDSKRFLGYSI 220
           Q+     G  +    +  ++ HIS+LRK L    +      + +    GY  
Sbjct: 184 QLMELALGKGNGESLDRSIDVHISRLRKALESGDSDSQLRYIQTVWGYGYVF 235


>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A V++  +      G  + G   +   +        D+  ++  L    G   
Sbjct: 5   ILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDVSGIDW 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       VPLI ++     +  +   + G DD V KP   RE++AR+ A+ RR  
Sbjct: 65  ARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRRTT 124

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +          G    +   E R+L + M ++ +   + Q+   ++
Sbjct: 125 PDAGDQPVEVEGLTLDPVSHRVSGNGRTLDMGPTEFRLLHFFMTHQERVYTRGQLLDNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEERTVDVHIRRLRKVLAESGHDHLVQTVRGTGYRF 225


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  +      +    +    + D+  ++  L    E  ++
Sbjct: 5   LVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIML--PEESGVD 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
           + R +RA     P+I ++        +   + G DD V KP          H        
Sbjct: 63  VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                + +   +    G + +  D    +  GE+  L  +E  +L Y+    G+ +++  
Sbjct: 123 KTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLSRET 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G      +  +V+ H+S LR K+  +      + + R  GY  D
Sbjct: 183 ILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGYRFD 232


>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
 gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
          Length = 792

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  LV +    L  D   ++E     +    L  +   D+   +  L       +
Sbjct: 3   ILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVML--PRLDGV 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R+     P++ ++   S        D+G DD V KP    E+ ARV A + R  
Sbjct: 61  GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     +   +++     + + Q  +  L  +E  ++E +M N  +  +   I   I+ 
Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR+KL+      D +++   +GY +
Sbjct: 181 YEDTPGEE-AVRTHIKGLRQKLKASGAPTDLIETVYGIGYRL 221



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +   AL    G+ + G +         +++  D+  ++  +    G  +
Sbjct: 490 IMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGIDL 549

Query: 61  LELPRIIRAHSQVPLIGISDY 81
             + R      Q+P+I ++ +
Sbjct: 550 CRVVRNDIQWEQLPIIFLTAH 570


>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 242

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                     +  +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFDLLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G ++E          L  S       ++  L   G    
Sbjct: 3   ILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVML--PGCSGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R      P++ ++         D  D G DD + KP     ++ARV A+ RR  
Sbjct: 61  QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120

Query: 121 VSNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +                        E   L  +E  +LEYL    G+ V+K++I  +++ 
Sbjct: 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+VE +I  LR+K+    G   + + R  GY +
Sbjct: 181 TA-YDGGANLVEVYIRSLRRKIDVPYGRQSIRTIRGAGYLL 220


>gi|291543637|emb|CBL16746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 236

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   ++D   +    DG  +  F + +       +A  D+  ++      G   L
Sbjct: 5   IYIADDEKNIRDLIKSFLESDGYRVWAFETGDALMGAFQAAPADLVILDIM--MPGTDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA + VP+I ++   S    +     G DD + KP     +L RV ++ RR+++
Sbjct: 63  TICQQLRAKTDVPIIMLTAKDSEYDYVQGITIGSDDYLTKPFRPTTLLMRVRSLLRRMEM 122

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ R                  ++       G+     + E R+L Y+M   GK  A+ +
Sbjct: 123 NSRRPVQPEEPDDLVVGDLTFSAEANTISCNGKGIGFTQTELRMLSYMMQKPGKAYARDK 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++  VE  V +  + ++R+KL        V +    GY ++ 
Sbjct: 183 LLETIWG-YETEVETRVTDETLRRIRRKLSLAGSSVCVQTIWGYGYKLEV 231


>gi|268607886|ref|ZP_06141617.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G +++          +    + D+  ++  L        
Sbjct: 4   LLLVEDDKEIIVNLTEFLSNEGFTVKNVTGQAAALDIIEKEKFDLVLLDVSLA--DGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I++    P+I ++      +T+  FD G DD + KP   RE+++R+  + R    
Sbjct: 62  AVCSAIKSDGATPVIFLTASSDEFSTVTGFDLGADDYIAKPFRPRELISRIKNVLRLTGN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + V +        G    L   E R+L   + NRG  +++T++  +I+ + 
Sbjct: 122 TGSVTQLGDVLVDTVKGTASKNGNDLYLSALEYRLLLVFINNRGAVLSRTKLLESIWDIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            E V +N +  +I +LR+K+ +       + + R LGY +D 
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQDPKIIRTVRGLGYKVDV 223


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G         +       +   D+  +   ++      +
Sbjct: 15  ILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTS-DIELLILDIMMPEMDGM 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++A      R   +
Sbjct: 74  QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                       +  I          V G    L   E  IL  L ++  +  +  +IF 
Sbjct: 134 QAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEIFE 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 194 RVW-KQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 239


>gi|315651418|ref|ZP_07904443.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315486377|gb|EFU76734.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG ++   N+ E    +       ++ ++      G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYTVFKANNAEDGLAIIEKEDIHLAILDIM--MPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRESYNFPIILLSAKSADIDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQ 123

Query: 122 SNNRAETGP-----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N                  + +  D     +  +   L   E  IL  L +N GK  + 
Sbjct: 124 LNPNNIVVEKEDPNEIRLKGMIINKDNHKVIIDDKEIKLTPIEFDILYLLASNAGKVFST 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +IF  ++         N V  HI +LR K+  +      + +   +GY I+
Sbjct: 184 DEIFERVWNEKVYEAN-NTVMVHIRRLRGKMNEDARVNKIITTVWGVGYKIE 234


>gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++    A    +G      +       +      D+   +           
Sbjct: 4   ILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTNIDLIISDIM--MPNMDGY 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +  A+ Q+P+I ++   S +     FD+G DD + KPI   E++ RV A+ +R K
Sbjct: 62  ELTRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKRSK 121

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++    T    V             +   +P+ E ++L  L++   K   + Q+   ++
Sbjct: 122 LASEHTMTVGNCVLDYDAQTVAFDGQQGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G+ D+ V+E  V+ HI +LR++  +   F  + + R LGY 
Sbjct: 182 GM-DKDVDERTVDVHIKRLRERYGSAEAFS-IVTVRGLGYK 220


>gi|282864678|ref|ZP_06273733.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560617|gb|EFB66164.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 236

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 7/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M  + +D A   +        +G ++                  D+  ++  +    G  
Sbjct: 1   MI-VAEDDAKQAELVRRYLEREGHAVTVVADGLAALEQARQGEPDLLVLDVMMPRADGLD 59

Query: 60  VLELPR---IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           V+ + R      A   +      D   L   L   D        + +  R          
Sbjct: 60  VVRVLRSEGRELAVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRR 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +     G + V     +  V G        E R+L  + A  G+   + Q+ + 
Sbjct: 120 DADRQDDPVVRVGALAVDPRRHEVAVDGVRITCTPGEFRLLAAMAAEPGRVFTREQLLAE 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G FD  +    V+ HI  LRKK+       D + +   +GY +
Sbjct: 180 LHG-FDRYISSRTVDVHIMNLRKKIEQAPRRPDRLLTVFGVGYKL 223


>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 209

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 7/214 (3%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++        + G       + +       +   D   ++          L + + IR  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLSVCKEIRKT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAET 128
           S VP+I ++        ++    G DD + KP    E+             +      + 
Sbjct: 59  SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQF 118

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A    
Sbjct: 119 GPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTR 177

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            V++H+  +R KL        + +   +GY  + 
Sbjct: 178 TVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 209


>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G +++              +   V  ++  + G      E
Sbjct: 18  LVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGP--DGFE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121
           + R++++   V +I ++   ++   +     G DD V KP    E+LAR+   +  +   
Sbjct: 76  VCRMLKSMGNVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRNQFPS 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E GP  +    ++   +GE   L   E  +L YL+ N G  ++K QI   ++G +
Sbjct: 136 LLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLVLSKAQILDHVWG-Y 194

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++N+VE +IS LR+KL ++     + + R  GY +D
Sbjct: 195 DFNGQDNIVEVYISALREKLGDR-DRTLIRTLRGQGYRVD 233


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R  RA     P+I  S   S    +   + G DD + KP          + +L RV 
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +  ++         + +    R+    G+   L  RE  +L Y   + GK  ++  +
Sbjct: 125 ALAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +    + + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ R++  
Sbjct: 65  QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S   A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHAE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +   ++ +       +   ++  ++  L        
Sbjct: 4   ILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLML--PNVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKKVREKKNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N   E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 NKIWDM-ESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRF 227


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +  +           + R    + E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++D        DG  +E     +       +   D+  ++   +      L
Sbjct: 6   ILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDV--LMPELDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            L R +R    VP+I +S        +   + G DD V KP   RE+  RV A+      
Sbjct: 64  NLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRVAA 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R    +        + +     +  V  +   L   E R+L  ++   G+ + ++Q+  
Sbjct: 124 RRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQLID 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             Y      V E  +++HI ++R KLR   G + +++   LGY 
Sbjct: 184 RAY-EDGLHVSERTIDTHIRRIRAKLR-PYGIEAIETVHGLGYK 225


>gi|206971849|ref|ZP_03232798.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229151075|ref|ZP_04279283.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|206733234|gb|EDZ50407.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228632386|gb|EEK89007.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 215

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DNIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
 gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
          Length = 228

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +    + +         +  +  ++  L   G+  +
Sbjct: 5   LLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWML--PGKSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S   +I ++        +   + G DD + KP   RE+ +R+ ++ RR   
Sbjct: 63  EVCKELRQSSACGIIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRRTAP 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A                        PL   E +IL  L    G   ++ Q+  A  
Sbjct: 123 IQVEAPPLQRGDLLISETQCQVTRNGELIPLTPTEFKILLTLANRPGVVFSRLQLMKAAM 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              D    E  ++SH+SKLRKKL         + +    GY  
Sbjct: 183 D-DDFMNYERTLDSHVSKLRKKLEPDPDHMKYIQTVYGFGYRF 224


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP +H     R        +
Sbjct: 60  ELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRVM 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +   N     G + ++   R   V GE   L  RE  + +   ++  +   + ++  
Sbjct: 120 KQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      D + +   +GY ++
Sbjct: 180 KVWG-FEYTGNTRAVDIMVQRLRKKLGASG--DSIKTIYGVGYKLE 222


>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G       + +           D   ++  L       L
Sbjct: 5   ILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIML--PEVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           ++ R IR  S +P+I ++        L   + G DD + KP   RE++AR+ A       
Sbjct: 63  DICRGIRKKSALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRRTSP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G + ++ +       GE   L R E  +L  +  + G   +++ + S+++G
Sbjct: 123 EKPVQSISIGSLTIYPELYKVSAGGEDIVLTRSEFMLLLTMAKHPGVVYSRSDLISSVHG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++    E  V+SHI  LRKKL   +  + + +   +GY I+ 
Sbjct: 183 -YEFEGYERTVDSHIKNLRKKLSEFVNDNIIHTIYGVGYKIEV 224


>gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
 gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
          Length = 237

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD A +++        +   +   N       L      D+  ++           
Sbjct: 5   ILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHVDLCVLDVM--MPKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + IR  S +P++ +S        +   + G DD ++KP +  E +AR+ A  RR   
Sbjct: 63  CLLKEIRKKSNMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASIRRFYA 122

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                                 +R+  +        E   L   E RI++  M++ GK  
Sbjct: 123 LGADIALGSGEDRGKKELRVQDLRLDREACTLYRGEEEIDLTSVEYRIMDLFMSHPGKVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            K QI+   +   +  V +N +   ISKLR KL +      + + R LGY ++ 
Sbjct: 183 TKQQIYERGW-EEEYIVADNNIMVCISKLRSKLDDGDNNHYIRTIRGLGYRMEK 235


>gi|237738033|ref|ZP_04568514.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229419913|gb|EEO34960.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 221

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G  +      E       + + D+  ++  L    +   
Sbjct: 5   ILIIEDEKPLAQVLEDTFSQEGFEIIKAFDGENGVDKFYNEKPDLILLDINL--PKKLGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++   S     +    G DD + KP + + +L +V  + +    
Sbjct: 63  EVCKEIRETSNIPIIMMTARDSDSDEYNGLSIGADDYITKPFNLKILLLKVKKLLKLDDN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  + E           +  + GE   L RRE + LEY++ N+G   ++  + + I+G F
Sbjct: 123 NIYKFENFS--FDIKKGEITINGENSELTRREIQFLEYMIKNKGIIFSRDYLLNEIWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++ VV++ + ++RKKL +      + + R +GYS D N
Sbjct: 180 DFEGDDRVVDTLVKRIRKKLGDYSF--LLKTIRGMGYSFDEN 219


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++         G  +           L      D+  ++  L        
Sbjct: 9   LVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVML--PDMDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++     Q  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 67  TVTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTS 126

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S          G + +  D  +    G    L   E ++L YLM N G+ ++K QI   
Sbjct: 127 GSLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDH 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-------NKLGFDPVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+        ++     + +KR +GY +
Sbjct: 187 VW-QYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLL 236


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ R++  
Sbjct: 65  QVLRELREWSSVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S  +A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 AGGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPSHVE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
          Length = 260

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 244

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        D+G+ +              + R D+  ++      GE  L
Sbjct: 7   ILVVDDDRRIRTSLKRFLTDNGMRVTEVADGVAMFAAVEAGRFDLIVLDVM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S++P++ ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 65  SLCRRLRGTSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRRTGD 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           + +      +    +    +V              L   E  +L   +      + + Q+
Sbjct: 125 AASETRVAGLTYVFENWRLDVVRRTLRNPEGALVDLTAGEHDLLLAFLERPQHVLTRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                G      +   ++  +S+LR+K+       + + + R  GY  
Sbjct: 185 LDLARGRVASPFD-RSIDVQVSRLRRKIEADPQTPELIKTVRSGGYIF 231


>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+ ++++       D+G  +           L       +  ++  L        
Sbjct: 5   ILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLFQEHEVHLIILDVML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R IR  S VP++ ++       TL  F+ G DD V KP     +LAR       R++
Sbjct: 63  SVCRRIRKVSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLENRQM 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G I +    R   ++G+ + L   E  IL YLM N+G  +++ Q+   I+G
Sbjct: 123 HEPGDMLSGGGITIHLPSRTVSIEGKNYSLTHTEYEILAYLMKNKGIILSREQLIIKIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E+  + SH+  LR KL +      + +    GY  + 
Sbjct: 183 -YDFIGEDRTLSSHVRNLRSKLGDH--AKHIVTVVRSGYKFEE 222


>gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
 gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 82/228 (35%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G  +   ++           +  +  ++          +
Sbjct: 8   ILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVM--MPEMDGI 65

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RV 112
           E    IRA        +  ++      + +  FD+G DD + KPI  + +++      R 
Sbjct: 66  EACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +    G + +  +      +G    LPR+E  +L  L +   K   +  
Sbjct: 126 FKEGAVTAEAEDITSVGDLIINREEYKIVHKGIEMVLPRKEFELLALLASKPNKVFKREV 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  +  V    ++ HI KLR+K+ +        + + +GY  
Sbjct: 186 ILDKVWGN-EVVVGGRTIDVHIRKLREKIGDNN----FKTVKGVGYKF 228


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         ++G  ++          L    +  V  ++      G    E
Sbjct: 10  LLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVM--MPGMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121
           + R+++    V +I ++    +   +   + G DD + KP    E+LAR+   +  +   
Sbjct: 68  VCRMLKKMENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRNQFPN 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP ++    ++ + +G V  L   E  +L+YL+ N G  ++K  I   ++G +
Sbjct: 128 LFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D A EEN+VE ++  LR+KL++K     + + R  GY +D
Sbjct: 187 DFAGEENIVEVYVRSLREKLKDK-DHQIIRTLRGAGYRVD 225


>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--ARHIGTVIRVGYKFEE 225


>gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL++          G +++     E   +L      D++ ++  L       L
Sbjct: 3   ILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGL--PKRTGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ +  R    + P++ ++     Q  +   ++G DD + KP H  E++AR+ A+  R  
Sbjct: 61  EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   + GP+ + +  +  ++ G    L   E   LEYL+   G+ V+KT++   +Y 
Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + NV+E  I +LRKKL       P+ + R  GY  +W
Sbjct: 180 AQDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFNW 222


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G    L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230


>gi|229829750|ref|ZP_04455819.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM
           14600]
 gi|229791739|gb|EEP27853.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM
           14600]
          Length = 218

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G  +              S   D+  ++  +       L
Sbjct: 3   ILVVEDDQMIREGVCEYLSESGYEMVEAGDGREALARFYSDDIDLVILDIQI--PHINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S++P++ ++ +   +  ++ F S  D  + KP     + AR+ ++  R   
Sbjct: 61  DVLKEIRRKSRLPVLILTAFSDEEYKIEAFTSLADGYIEKPFSLPVLKARIDSLIERHFG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +R       V        V GE   +  +E  IL++L+ + G  + + QI   ++   
Sbjct: 121 LTDRFAYKGTEVNFSSYSARVDGEKVDVNAKEVEILKFLLEHEGCALTRAQILDGVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL    G D + + R +GY ++
Sbjct: 181 EEIPFDRVIDVYIKELRKKL----GLDCIITVRNVGYKLE 216


>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G ++                  DV  ++      G   L+
Sbjct: 16  LLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVM--MPGIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+         
Sbjct: 74  VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGN 133

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 +     + +     +R+    R          L R E  +LE L+ N G  +  
Sbjct: 134 ASLDAPKEEPSPSGQVSVAGLRMDVQARRAWRGEREVELTRTEFDLLELLVRNAGIVLDH 193

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 194 TTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDQPGAPALIHTVRGVGYVL 242


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G         +       +   D+  +   ++      +
Sbjct: 3   ILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTI-PDIDLLILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K+
Sbjct: 62  QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V +   + +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 245

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       S          A  D+  ++  L   GE  +
Sbjct: 4   ILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWML--PGESGV 61

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
            L R  RA ++     +I ++   S Q  +   D+G DD ++KP    E+    R     
Sbjct: 62  SLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLRR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +      E GP+R+         Q +   L   E R+L +LM    +  ++ Q+   
Sbjct: 122 KLPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRGQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 182 VWGDH-VFIEERTVDVHIKRLRGVLAPYGCAELIETVRGAGYRL 224


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E             + + D+  ++  L       +
Sbjct: 9   ILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIML--PKLNGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR  S +P+I ++        +   D+G DD + KP    E    +       + 
Sbjct: 67  EVCRRIRQISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKKL 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N      + +  D        ++  L + E  +L++ M N+   + + QI + ++
Sbjct: 127 EIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   + NVV+ ++  LR K+ NK     + + R +GY +
Sbjct: 187 G-FDYLGDTNVVDVYVRYLRTKIDNKYNERFIYTIRGVGYLL 227


>gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +      +           D+  ++  L   G    
Sbjct: 4   ILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLML--PGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR   + P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  AICRRIREKKETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIGRFER 121

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++ +             +  D R   ++G    L  +E  +L ++  N      K  +
Sbjct: 122 LTSQEKRKQHHIIEINGLRIDKDARRVYLRGAETALANKEFDLLLFMAENPNIVFNKETL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++GL D   +   V  H+++LR+K+  +      +++    GY  
Sbjct: 182 FERVWGL-DAVGDTTTVTVHVNRLREKIETDNREPRYIETVWGAGYRF 228


>gi|298246096|ref|ZP_06969902.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553577|gb|EFH87442.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +     F  +G ++    +           + D+  ++  L   G   +
Sbjct: 14  ILLVDDERQIIEFLRMGFEYEGFTVHVSMTGHEALQAVERHKPDIVILDLML--PGLDGM 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + I       +I ++    ++  +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 72  AVAQQIHGAYNTAIIMLTAREEVEDRVTGLELGADDYVTKPFAFKELLARVRAVLRRRGL 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N      I +    R          L  RE  +LE  +++  + + +  I + I+G 
Sbjct: 132 QLGNVLVFQDITLNRTTRVVRRGAREIELTPREFELLELFLSHPRQVLTRNAILARIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   ++NV+E ++  LR+KL++      + + R +GY +
Sbjct: 191 YNYVGDDNVIEVYVKHLREKLQDLP-PQLLQTVRGVGYVL 229


>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 228

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +       +   D++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITT-PDIALMILDIMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + +R  S +P+I +S   S    +    +G DD V+KP +  E++ARV         
Sbjct: 62  EVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 243

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIG-KGEK 59
            +L++D A +          +G      +        L      D   ++  L    G +
Sbjct: 13  ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           + +  R       VP+I ++   +    +  F+ G DD V KP   RE++ R+       
Sbjct: 73  ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRRT 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   + +      +RV  +G    V  +   L   E R+L   ++ RG+   +  + S 
Sbjct: 133 ERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALLSD 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ +  V    V++H+ +LR+KL +      V++ R +GY  
Sbjct: 193 VWGI-EADVTTRTVDTHVKRLREKLGDAG--RYVETLRGVGYRF 233


>gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
 gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
          Length = 224

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSAALEKNYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|160946207|ref|ZP_02093418.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270]
 gi|158447730|gb|EDP24725.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270]
          Length = 218

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G  +      +    L +    D++ +   +       L
Sbjct: 3   ILVVEDDQFIREGISEYLSEFGYEIIQAKDGQEA--LINFNNNDINLVILDIQIPFLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P++ ++ +   +  ++ F S  D  + KP     +  R+ ++ +R   
Sbjct: 61  EVLKEIRKKSKLPVLMLTAFNDEEYKINAFSSLADGYMEKPFSLPVLKVRIDSLIKRHYS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E     V       +  GE   +  +E  IL+YL+ N G  + + QI   ++   
Sbjct: 121 GQEKFEYKDAEVNFTSYTAKYNGEDVDINAKELEILKYLLENEGHALTRAQIIDNVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL    G D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYIKELRKKL----GLDCIVTIRNVGYKLE 216


>gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
 gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
          Length = 222

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +       +A  D   ++  +    +  +
Sbjct: 3   ILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGVIMDIMI--PKKDGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IRA     P++ ++     Q  +   D+G  D + KP    E+LAR+  +     
Sbjct: 61  SVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTVH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +++ ++       G    L  RE  ILEYL+ N+   V + QI + I+ 
Sbjct: 121 ISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D  +  NVV+ +I  LR+K+ +      + + R +GY ++
Sbjct: 181 IDD-DINSNVVDVYIRYLRRKIDDPFEEKLIHTIRGVGYRLE 221


>gi|89096819|ref|ZP_01169710.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088199|gb|EAR67309.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    + E      S    D+  ++  L   G+  
Sbjct: 6   ILLVDDEKSIVKLMETVLRKEGFSSIHTAYTAEEALECVSRHPIDIVVLDVML--PGQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR  S   ++ ++   S    L  F  G DD + KP +  EI AR+ A  RR +
Sbjct: 64  FDICPKIREISDAYILFLTARVSDLDVLTGFAIGGDDYITKPFNPLEIAARIKARLRRNQ 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQI 173
             +   +    +        + +             P +   +L+YL  +    ++KTQ+
Sbjct: 124 APSPALKEAGRKHDFGRFILDEEAGDLIVEGKAVQTPAQVFLLLQYLCQHPNTVISKTQM 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A++G FD  V++N V  HI ++R+++  +    + + + R LGY +
Sbjct: 184 LEAVWG-FDSFVDDNTVTVHIRRIRERIEKDPSHPELLVTVRGLGYKL 230


>gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    DG+     +       L    + D+  ++  L   G   L+
Sbjct: 15  LVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLFRQLKPDMVLLDIHL--PGMDGLD 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE------------ILA 110
           L R IR   Q P+I ++        L     G DD V KP    E               
Sbjct: 73  LLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRVQAQ 132

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             A      ++   R E       +     + +    PL   E R+L  L A   +  ++
Sbjct: 133 PSAPARAAQRIRVGRIEIDQEAHAAFAHGDDGRAVPLPLTLTEYRLLACLAAQPRRCFSR 192

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +      L +    + V++SH+SKLR+KL+     + +++ R +GY +
Sbjct: 193 SHLIEHC--LPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240


>gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 226

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +         D G +++     E   +L  +   DV  ++  L       + 
Sbjct: 4   LLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGL--PKIDGVS 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  VLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++     G +R+        V GE   L   E R+L Y+M ++G+ +++T++   +Y  
Sbjct: 122 IASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  I +LRKK+    G D +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFIGRLRKKI----GSDRIETVRGLGYRL 216


>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
 gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding [Nitrosomonas
           europaea ATCC 19718]
          Length = 240

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D + +++       + G +    NS E    + +    D+  ++  L G  G ++ 
Sbjct: 6   LVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKSGIELA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +P+I ++     +  +   ++G DD V KP   RE++AR+ A+ RR   
Sbjct: 66  RSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRSLP 125

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                       +      RV     +     +   L   E R+L +LMA+  +   + Q
Sbjct: 126 EASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSPTEYRLLYFLMAHAERVHTRAQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VE+  V+ HI +LRK L      D V + R  GY  
Sbjct: 186 LLDRVWGDH-VFVEDRTVDVHIRRLRKALDVAGKADLVQTVRGAGYRF 232


>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +  +       +   D+  I   ++       
Sbjct: 3   ILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTN-PDIGLIILDIMMPEMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ +S        +    +G DD V KP +  E++ARV A+ RR + 
Sbjct: 62  EVLKEVRKDNPVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRAQN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +A    + V     + +             L   E  IL  L ++  +  +   IF 
Sbjct: 122 GLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            ++   +  V    V  H+S LR KL +   G   V +   +GY I+ 
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGYKIEV 228


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIM--MPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
 gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
          Length = 230

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++ G   L  D+G      ++ +    L +  + D+  ++      G     
Sbjct: 4   LIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIM--MPGMDGYA 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R IR  + QVP+I I+        +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 62  VCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRRCNK 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ N+      + V               L  R+ +IL+ L    GK V +  +F
Sbjct: 122 ALPAEQIENDHFTMDDLTVLPLQLRAHRDQTKIELSLRDIKILQLLYREAGKVVDRDMLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  +G  D       ++ HISKLRK +  +      + +   +GY  D 
Sbjct: 182 NECWGR-DYLPSSRTLDQHISKLRKLIEIDPRQPRIIKTAHGVGYRFDK 229


>gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 223

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
           1118]
          Length = 228

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|291562260|emb|CBL41076.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   +          +G  +E F   E           D+  ++      G   
Sbjct: 4   LIYVADDEKNICFLIENFLEKEGYEVECFGDGESLLDAFQKKAPDLCILDIM--MPGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           L +   IR  S VP+I +S   S    +     G DD + KP          + +  RV 
Sbjct: 62  LTVCTQIRKTSHVPIIIVSAKDSPLDRITGITLGSDDYMVKPFLPLELVTRVKALFRRVD 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               + + + +  E G I+++   R  +++ E F L   E   L +++  +    ++  +
Sbjct: 122 TFSGQEEEAKDSYEIGDIKLYPKRRAAKLKDEDFALTPLEFDFLCHMLERQEHAASRDDL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ +    V+   V+  + +LRKKL+++     +++    G+ +
Sbjct: 182 LKSLWKVDSREVDTRAVDDMVKRLRKKLKDQKSTVKIETVWGYGFRL 228


>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
           albilineans GPE PC73]
 gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
           albilineans]
          Length = 229

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      + L +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWML--PGTSGL 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R  R  +     P+I ++        +   ++GVDD V KP   RE+    R     
Sbjct: 63  ELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +     G +R+              P+   E R+L + M +  +  ++ Q+   
Sbjct: 123 TREDDEDGSVSVGNLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYSRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFAVENMVQTVRGSGYRF 225


>gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           pyrifoliae DSM 12163]
          Length = 229

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +    L      D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELNGHDRMVQTVRGTGYRF 225


>gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 219

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +         +    D+  ++  L   G     
Sbjct: 1   MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIML--PGLNGYR 58

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           +   +RA     P++ ++         +  D+G DD + KP  +  ++AR+         
Sbjct: 59  VCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGN 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++   E G +R+ +      + G    L  +E  +LE L    G+ V+K QI   ++
Sbjct: 119 GAGASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE ++S LR+KL        + + R  GY ++
Sbjct: 179 D-FAYDGDPNIVEVYVSTLRRKLDA----GLIRTVRGAGYRLE 216


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +        I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|268318212|ref|YP_003291931.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262335746|gb|ACY49543.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 243

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 13/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +       F  +G  +E            +  + DV  ++  +    G +V 
Sbjct: 21  LIVDDEDDILALLAYNFKREGFEVELARDGVEALEKAARWQPDVIILDIMMPNMDGIEVC 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
              R        P++ ++     +  +   + G D  V KP+         R +L     
Sbjct: 81  RRIRRDARLRTTPILMLTARTEEEDQIQGLEIGADMYVGKPVSVPVLLSQTRALLRGARR 140

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +            +   R+     E   LPR+E  +L +L A+ GK   + ++ 
Sbjct: 141 YETPPDLLRIHDLEIDRDRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQELL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     V+   V+ HI K+R+KL +      +++ + +GY  
Sbjct: 201 DEVWGRDVYVVD-RTVDVHIRKIREKLGSH----YIETVKGVGYKF 241


>gi|229100335|ref|ZP_04231208.1| Response regulator [Bacillus cereus Rock3-29]
 gi|228683091|gb|EEL37096.1| Response regulator [Bacillus cereus Rock3-29]
          Length = 240

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   A+   +G   +    + +    +    + D+  ++  ++      
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGKEGIHMCKQVQPDLIILD--IMLPDLDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117
             + + IR  + VP+  +S        +     G DD + KP   +     +       +
Sbjct: 71  YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    + G I +            +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YQEKARIVYQFGDITIDEAQGTVLRGDTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +       + + R LGY ++
Sbjct: 191 WGDT-YLGNDNIMMVHMRHLREKIEDNPSKPHYLVTVRGLGYKLN 234


>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STVNVSTADTLTSSGIHVHFPSRTVTVDGEGISMTHTEFEILTYFMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRAGYKFE 225


>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +           + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227


>gi|30020982|ref|NP_832613.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229128203|ref|ZP_04257184.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|29896535|gb|AAP09814.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228655062|gb|EEL10919.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      D + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLEE 212


>gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
 gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB
 gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis]
 gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   +    ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIML--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   R +L RV A+ RR   
Sbjct: 63  ELLREFRAQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL      + + + R +GY ++ 
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218


>gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     L   +G  + G  +        + +  D+  ++  L   G+  L
Sbjct: 27  ILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVML--PGQSGL 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IRA S+VP+I ++        +   + G DD + KP    E+LAR+ A+ RR + 
Sbjct: 85  DLCRTIRARSEVPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRRAQA 144

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
             NRA                               L   E  +L     +  + +++ Q
Sbjct: 145 GANRAGMVSGDRMVFSDWVLDTRRRELAAPDGSAVDLSSGEYDLLLAFCEHPQRVLSRDQ 204

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +         ++V+   V+  +S+LR+KL         + + R  GY  
Sbjct: 205 LLDLARNRISDSVD-RSVDVMVSRLRRKLEPLPDSPAVIKTVRGAGYMF 252


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    A     G  +   ++ +         R  +  ++  L        
Sbjct: 14  LLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVML--PDLDGF 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
           E+ R +RA     P++ ++        +     G DD V+KP    E+      + R  A
Sbjct: 72  EVTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTA 131

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      + +     +    G+   L   E ++L YL++N G+ V+K QI 
Sbjct: 132 PVDAALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQIL 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D A +  ++E+++  LR+K+ +      + + R +GY +
Sbjct: 192 DHVWS-YDFAGDARIIETYVRYLRRKI-DCFEPPLIQTVRGVGYCL 235


>gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47FAA]
          Length = 234

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D    +   +G  +     +      +    + DV  ++  L       
Sbjct: 5   ILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIML--PDIDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S   ++ +S        +     G DD V KP   RE++ R+ A  RR +
Sbjct: 63  LEVCRQIRQFSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQQ 122

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                           P+R+  +       G+   L  RE  +L YLM N  K ++K ++
Sbjct: 123 YQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  ++G +  ++ +N +  HI  LR+K+ +       + + + LGY +
Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHLREKIEDLPSQPQQLITVKGLGYKL 229


>gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 222

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G ++   ++ +            +  ++  L       L
Sbjct: 4   ILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGL--PDADGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P+I ++    L   +   + G DD + KP   +E+LARV A  R   
Sbjct: 62  EVLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFT 121

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                R          LP RE  +LE L+ +  + +++ Q+   
Sbjct: 122 PRATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ +I  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYIGYLRKKL----GSDLIETVRGIGYRL 220


>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
 gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A +++         G      ++ +    L      ++  ++  L G  G + 
Sbjct: 8   ILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGLEF 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +     ++VP+I ++        +   ++G DD + KP   RE++AR+ A+ RR  
Sbjct: 68  ARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRRTT 127

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +           E   +   E R+L++ M ++ +  ++TQ+   ++
Sbjct: 128 PQGIEDPIEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L +      + + R  GY  
Sbjct: 188 G-GNVYVEERTVDVHIRRLRKALGSNYEH-LIQTVRGTGYRF 227


>gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3]
 gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella sp. ANA-3]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDMNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223


>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
 gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 240

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +                  D   ++  L   G   L
Sbjct: 7   ILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLML--PGVDGL 64

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R         P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 65  EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ R LK+         + +    RD  +  +   L  RE  +L +   N GK  ++  +
Sbjct: 125 AMSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVELTPREFDLLYFFAKNPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G ++    E+ V +HI++LR K+  N    + + +    GY  
Sbjct: 185 LNQVWG-YEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGYKF 231


>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   ++  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVML--PNISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R IR  ++ +P+I ++   S+   +   D G  D + KP         I A +    
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+  +   + +    R+ +       L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VIKEEENSSYQIADLYLDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LR+K+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRRKIDCNVDVPLIHTVRGVGYVL 225


>gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     +             D+  ++          L
Sbjct: 5   ILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGNIDLIILDIG--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKRSSN 122

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      V         GR          +   E  IL+ L++      ++ Q+  
Sbjct: 123 GAEPDRRHATLVAGELSLDRRGRTVMFGENTIAMTALEFAILDALLSRPDMVFSREQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A YG     V +  ++SHI  +R K     G   + + R +G+ +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFLVAGGQGIIATVRGIGFKL 226


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +   +S +      S    D+  ++  L         
Sbjct: 8   LVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVML--PDIDGFA 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +  A   VP + ++   + +  +     G DD V KP    E++ARV AI RR  +
Sbjct: 66  VCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGM 125

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++   E           + R+    G +  L   E R+L YL+ N  K + + Q+   ++
Sbjct: 126 ADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   +  V+E+++S LR+K+ +      + + R +GY +
Sbjct: 186 G-HDFGGDARVLETYVSYLRRKIDDAP-PALIHTVRGVGYVL 225


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
              ++D + +          +G  +    +      L      D+  ++  L  G G ++
Sbjct: 4   ICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +  R      ++P+I ++        +   D G DD + KP   RE+            
Sbjct: 64  CKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRRAG 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +        + + +         +   L   E R+L  L  +R + + + Q+F AI+
Sbjct: 124 KKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEAIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            L  E V +N +  +I +LR+KL +       + + R LGY +
Sbjct: 184 DLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKL 226


>gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++       + G  ++     E        +  D+  ++  L        
Sbjct: 3   ILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVML--PVRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
            +   +R    + P++ ++   S+   +   + G DD + KP      +      + R  
Sbjct: 61  HVLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +               L  +E ++L  L   RG+ +++T I   ++ 
Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + + + N V+  + +LR+K+        + ++R LGY ++
Sbjct: 181 M-NFSTDSNAVDVAMGRLRRKVDEPFENKLIHTQRGLGYILE 221


>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVML--PDVSGTE 62

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           + R I++      VP++ ++        +  F+ G DD V KP   RE++ R+       
Sbjct: 63  VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRA 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       GPIRV  +     V G    L   E ++L  LM+  G+  ++ Q+   
Sbjct: 123 GARPSERPPESVGPIRVDVESHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLED 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++      VE   V++H+ +LR+KL    G D +++ R +GY +
Sbjct: 183 VW-EMSAEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 223


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +   P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEEL-LARIRAMLRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D     V G+   L + E  +L  L+ NR   + + QI + ++G +
Sbjct: 121 QKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D  VE NVV+ +I  LR KL+       +++ R +GY 
Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYV 217


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVML--PNISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R IR  ++ +P+I ++   S+   +   D G  D + KP         I A +    
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
 gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       ++G S++  N+ E    L  +   D+  ++  L  KG    
Sbjct: 3   ILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKG--GW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A + VP+I +S   ++   +   + G DD + KP    E+LAR+  I RR  
Sbjct: 61  AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   + +          G    L  +E ++L  ++  RG+ + +T I   ++G
Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVV+  I +LRKK+ +      + + R +GY ID 
Sbjct: 181 I-NFDSDTNVVDVAIRRLRKKVDDPFPLKLIHTIRGVGYVIDE 222


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +         G       S           R DV  ++  L    G ++
Sbjct: 8   ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  R    +P+I ++     +  +   D G DD + KP   +E++AR+ A    + 
Sbjct: 68  LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + +    G + +  +    ++      +   E R+L++LMAN  +  ++ Q+   ++
Sbjct: 128 PERAKSLLRAGAVTLDPESCQVKIGNGEIEMGHSEFRLLKFLMANPDRVFSRGQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +EE  V+ HI +LRK L  K   + + + R +GY +
Sbjct: 188 SN-QLDIEERTVDVHILRLRKAL--KGQENLIRTVRGMGYML 226


>gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7]
 gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A        +   ++           + ++  ++  L        
Sbjct: 3   ILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLML--PDISGT 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP+I ++   +    L+    G DD + KP   +E++ARV  + RR   
Sbjct: 61  VICQKIRKTSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRSDS 120

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S               ++ + +      +   L   E  +L  L +   K  ++ Q+   
Sbjct: 121 SVVTETKWSFDKGNLVIYPENKQVFKNQKEVILTPTEFELLTLLASYPKKIFSREQLLEN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + GL +  V + +++SHI  LR+K+ +       + +   +GY  
Sbjct: 181 VKGL-EFDVLDRIIDSHIKNLRQKIEDNTRQPYFILTVYGMGYRF 224


>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
           chloroplast
 gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
 gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
          Length = 255

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G  +          +L      ++  ++           
Sbjct: 10  ILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVM--MPKIDGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 68  GVCQEIRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 127

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                             ++  + +      E   L   E  +LE L++N G+ +++T I
Sbjct: 128 FYFSNTFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTI 187

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G   +  ++  VV+ HIS+LR KL +     + + + R  GY  
Sbjct: 188 LEEVWGYTPERHLDTRVVDVHISRLRAKLEDDPSNPELILTSRGTGYLF 236


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +               E  G    L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230


>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 254

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 18/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    +    +G ++                R D+  ++   +  G   L 
Sbjct: 17  LIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDV--LMPGMDGLT 74

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------------- 107
             R +R A   +P++ ++        +   D+G DD + KP    E              
Sbjct: 75  ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                 +    L   ++  E   +R+ +  R+    G +  L R E  +LE  +++  + 
Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + QI  A++G FD     N ++ ++  +RKK         V + R +GY++
Sbjct: 195 LTREQILRAVWG-FDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYAL 246


>gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+      +         + D++ I+           
Sbjct: 5   ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIM--MPNINGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           EL +I+R   ++P+I +S        +     G DD ++KP            ++     
Sbjct: 63  ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L    ++     + +       + +G    L   E ++L+  M   G+   K QI
Sbjct: 123 FNTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F  ++       ++N +   IS+LR+K+ +       + + R LGY  
Sbjct: 183 FENVWSDH-YYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229


>gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G +    +              D+  ++  L   G   L 
Sbjct: 10  LVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLML--PGRDGLS 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L + +R  S+VP+I ++        L   ++G DD + KP   RE++ARV      ++R+
Sbjct: 68  LCQELRRFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRRHKRV 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 A + P+ +  +     + G    L   E R+L+ L A  G+  ++ Q+   ++ 
Sbjct: 128 PTDLVAAPSSPLVIDEERHRALLDGHELDLTPVEFRLLKALAAAPGRVFSRDQLLDKLHD 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
               A+ +  ++SH+  LR+KL     G +P+ S   +GY  +
Sbjct: 188 DT-RALSDRTIDSHVKNLRRKLEQACPGLEPIRSIYGVGYRFE 229


>gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G ++  ++  E           D++ ++          +
Sbjct: 5   IALVDDDRNILTSVSIALQSEGFTVRVYSDGESALKALLDNPPDLAVLDI--KMPRMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           EL R +R  S +P I ++              G DD + KP              R    
Sbjct: 63  ELLRRLREKSSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRRTEV 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R             +   G + +       +  G+   L   E  ILE L    G   ++
Sbjct: 123 RATPEDEADATPVEKIVRGRLEMDPARHRVQWDGKDVTLTVTEFLILEALAQRPGFVKSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+    Y   D  V++  ++SHI +LR+K R     F  +++   +GY  
Sbjct: 183 DQLMDTAY-QDDVYVDDRTIDSHIKRLRRKFRQVDPEFKAIETLYGVGYRF 232


>gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 241

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +            + ++   S E      +     +  ++  L       L
Sbjct: 6   ILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINL--PQMDGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R I+ H     +I ++   S    +   + G DD + KP   RE+ ARV    R   
Sbjct: 64  SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRA 123

Query: 121 VSNNRAETGPIRVF-------------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                                             +  +   L   E  +L Y   +    
Sbjct: 124 QLLAGQNNDNSPADSEQTLNVGSLNIEFSSHQVYLGKQALNLTATEFDLLVYFARHPNHV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++G +  +  E+ V SHI++LR KL        +++   +GY ++
Sbjct: 184 FSRQQLLDKVWG-YQHSGYEHTVNSHINRLRAKLEEHQQAPIIETVWGVGYKLN 236


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++          L +S   DV  ++  L       +
Sbjct: 5   ILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVML--PSINGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR  SQVP+I ++   ++   +   D+G DD + KP    E    +  +      
Sbjct: 63  EICRRIRTQSQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++       I +     +  VQG    L + E  +L+ L+ ++ +   +  I ++++
Sbjct: 123 EQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  +E NVV+ +I  LR KL      D +++ R +GY +
Sbjct: 183 G-YDTDIETNVVDVYIRHLRTKL-PGAMNDYIETVRGVGYVM 222


>gi|295425495|ref|ZP_06818188.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064834|gb|EFG55749.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 93/235 (39%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +      +   I   L    +  +
Sbjct: 5   ILMVEDDTSVAEMMEMFFKKEGWQQDVAVDGVQAVEMFKEHASEYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R  S   P+I ++   S    +     G DD V+KP     ++AR+ A++RR+ 
Sbjct: 65  QVAKEVRQISPTVPIIMLTARGSEADQVLGLGVGADDYVSKPFSPISLIARIKALHRRVM 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV--------------FPLPRRERRILEYLMANRGK 166
           +          +V +D        ++                L  +E  +L  +     +
Sbjct: 125 MDEPTNNAVNKQVNNDYDIQTQHLKISKSRREVLFDGKSVTTLTPKEFDLLFTMAQKPKQ 184

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGPQVIQTVWGVGYKFD 237


>gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
 gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  + G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +    +          +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKSIDANGLILDPVSQRVSFGNNFLDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPYAADRFVQTVRGTGYRF 227


>gi|152986792|ref|YP_001349246.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961950|gb|ABR83975.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   D       + G +++  ++      L  +   DV  ++  L   G     
Sbjct: 4   LIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVML--PGIDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120
           + R +R   Q P+I ++    ++  +     G DD + KP    E++AR+          
Sbjct: 62  VLRALREQRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S ++     + +    R     G    L  +E  +L  L    G+ ++KT I   ++ +
Sbjct: 122 ESASQMRVADLSIDLLSRKVFRGGSRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 182 -NFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+        + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDEPFPEKLIATIRGMGYSF 255


>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL +    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLD 222


>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
 gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
 gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
 gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE   +      V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  + G  +             D+  ++      GE   
Sbjct: 6   ILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIM--MPGEDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  SQ+P+I ++        +   + G DD + K    RE+LAR+  I RR + 
Sbjct: 64  CLCRQLRQDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       ++      D   +        +V  L   +  +L   ++N    +++  I 
Sbjct: 124 DNQIQLKRRVKFDDWHLDMVTRQLSSPGSKQVKQLSGADLSLLGLFVSNAKAILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR+ L +K     + + R  GY +
Sbjct: 184 REIWGR-DAEPFERGIDVQISRLRQHLEDK-DRSLILTVRNKGYML 227


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       ++  ++      +            +  ++  L       +
Sbjct: 6   ILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKYD-NTFQLIILDLML--PYIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R IR +S VP+I +S        +     G DD + KP   RE+        R    
Sbjct: 63  EVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYIY 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y  +   N       +++ +       + +   L  +E  +L++ + N  +   K QIF+
Sbjct: 123 YNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIFN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   D   ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 183 GVW-ENDYLHDDNTVMVHIKRLRNKIEDNPNNPKYIVTVWGIGYKL 227


>gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
 gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
          Length = 230

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M  +++D A +++        +G    G             +  D+  ++  L    G +
Sbjct: 1   MIYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPDEDGYQ 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAA 114
           +L   R   A   +P+I ++   S    +   D G DD + KP    E ++R       A
Sbjct: 61  ILNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGADDYLCKPFGIMEFISRVKAVLRRA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      G I +    R   V G    L  +E  +L   + +  + +A+ +I 
Sbjct: 121 QAAAPAPAPKTLTFGAIVMDDVARTVRVDGAPVELTFKEYALLHLFLEHPEQVLARERIM 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   D  +E   ++ H+  LR+KL        + + R +GY +
Sbjct: 181 KEVWDTDDL-LESRTIDMHVRTLRQKLGAAGES--IRTVRKVGYKL 223


>gi|168178370|ref|ZP_02613034.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226948239|ref|YP_002803330.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670982|gb|EDT82956.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226841050|gb|ACO83716.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 240

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IRA S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N    GP  +     + + +G +  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVENASEEKNILSFGPFELNISKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234


>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G  +   +  +       ++  D+  ++  L   G   L
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLML--PGLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++ R++RA S   P++ ++        +   + G DD V KP        R       + 
Sbjct: 62  QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + ++++   G + +    R    + ++  L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LSEPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            + G+ +    +  V+  ISKLR+K  +       + +    GY  
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226


>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                     +  +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +        I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 275

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G   E          +    R D+  ++  L   G+  L
Sbjct: 7   ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVML--PGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S++P+I ++        +   + G DD V KP + RE++AR+  + RR + 
Sbjct: 65  TLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------------PLPRRERRILEYLMANRGKRV 168
                        S                          L   E R+L + +    + +
Sbjct: 125 LPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVM 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++ Q+     G   EA +   ++  +S+LR +LR+       + + R  GY +
Sbjct: 185 SRDQLLDLTQGRAAEAFD-RSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYL 236


>gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1]
 gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     DG S E           Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A      ++ +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RAEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR    G +P+ + R LGY
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGY 219


>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
 gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
          Length = 230

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD A +++                        L    + D+  ++  L G  G ++ 
Sbjct: 7   LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLPGTSGVELA 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   A +++P+I ++        +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 67  RRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTTP 126

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +   G     +     +   E R+L++ M ++ +   ++Q+   ++G
Sbjct: 127 PGVETPIEVDGLTLDPVGHRVTTETGALNIGPTEYRLLQFFMTHQERVYTRSQLLDQVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  VEE  V+ HI +LRK L ++     + + R  GY  
Sbjct: 187 -GNVYVEERTVDVHIRRLRKALGDQYDH-LIQTVRGTGYRF 225


>gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       ++G S++  N  E    L  +    +  ++  L  +G    
Sbjct: 3   ILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRG--GW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + +RA     P+I +S    +   +   + G DD + KP    E+LAR+  I  R  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   + +          G    L  +E ++L  ++  RG+ +++T I   I+G
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVV+  I +LRKK+ +      + + R +GY +D 
Sbjct: 181 I-NFDTDTNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLDE 222


>gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D   A    +G  +    +      +    R D+  ++  L        
Sbjct: 4   ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLML--PDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S V +  ++   +L   ++  + G D+ + KP+  RE+ ARV A++RR+  
Sbjct: 62  EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  D R  ++ GE   L   E  IL  L +N+GK   +  I    +
Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ +    +  ++ HI  LRKK+         + +   +GY  
Sbjct: 182 GM-EFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223


>gi|307701723|ref|ZP_07638737.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|307612981|gb|EFN92236.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIML--PGTDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R ++A      +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S   +    I                V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+  +I+G +    E   V+ HI  LRKKL        V + R +GY 
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYVKTVRGVGYK 223


>gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
 gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++   I     +G  ++  ++                 ++  L        
Sbjct: 5   ILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPM--LNGK 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S     Q+ ++ F+ G DD V KP   RE++ R+ AI +R K 
Sbjct: 63  SILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQRTKR 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S                 + +  +     V      L  +E  +L +L  +  K   + +
Sbjct: 123 SVFYTPELYAKDVLVFPGLIIDVNSHKVIVDDTEVLLTPKEFDLLLFLAKSPDKAFKRNE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221
           I  A++  +D   +   V++HI ++RKK           + +   +GY  D
Sbjct: 183 ILRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPIVAQMIVTVWGIGYKFD 232


>gi|288942284|ref|YP_003444524.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288897656|gb|ADC63492.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++               R D+  ++  L   G+  L
Sbjct: 9   ILIVEDEERLARLVADYLRAAGHRVQHLAEGTGVAAWVRRERPDLILLDLML--PGKDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  SQVP+I  +        L   + G DD V KP   RE++ARV A+ RR   
Sbjct: 67  DICREIRTESQVPIIMTTARVEEIDRLLGLELGADDYVCKPYSPRELVARVKAVLRRTLA 126

Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A                   +   L   E  +LE L    G+  ++ ++   IY  
Sbjct: 127 PEPPAADPGPLHLHRDELRVRAGDDEIELTAVEFALLETLHGAPGRIFSRDRLMDRIY-R 185

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
               V +  ++SH+ KLR+KL       + + S   +GY  +
Sbjct: 186 DHRVVSDRTIDSHVKKLRRKLAELVPDQELIHSVYGVGYRYE 227


>gi|225028286|ref|ZP_03717478.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
 gi|224954332|gb|EEG35541.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 12/223 (5%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++    L G +G  +E   +      +  +   D+  ++      G    +  R
Sbjct: 2   DDNPEIREIIQVLLGGEGYLVETAGNGVKALEMLENREYDLIILDIM--MPGMDGYQTCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVAAIY 116
            +R  S  P++ +S           F SG DD + KP  + E            +V    
Sbjct: 60  KMREESNAPILFLSARTKDSDKTLGFSSGGDDYLAKPFSYNELISRAKALIRRYQVYKGK 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + V  + +     G++  L   E  IL  L+ NR +  +  +++ A
Sbjct: 120 AEKVETPKNFSCKNLVVAEETKSVYSDGQLLELTDTEYAILLLLLKNRRQVFSTERLYEA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           ++        EN V  HI  LR+K+  +      + +    GY
Sbjct: 180 VWKENFYYGAENTVMVHIRNLRRKVERDSKNPMIIKTSWGKGY 222


>gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D    +        + G  ++   + +   +L       +  ++  L    G  V
Sbjct: 3   ILVIEDNLTTRQYLQKALKEQGYEIDLAENGQDGLFLALEGDYQLILLDRMLPKLDGLTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R   A  Q P++ +S   S+   +     G DD + KP    E+L R+  + +R  
Sbjct: 63  LTTLR--NAGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQRKG 120

Query: 121 VSNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++++                R          L  +E ++L YLM + G+ V+++ +F A
Sbjct: 121 SNSDKQTNVLQVADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    + NV++ H+++LRKK+        +++ R +GY +
Sbjct: 181 VWD-YQFDPQTNVIDVHMARLRKKVEFDGLPSLLETVRGVGYRM 223


>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++         DG ++   +  E   +  S  + D+  ++          LE
Sbjct: 6   LIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIM--MPKMNGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           +   +R  S VP+I ++     +  L+ ++ G DD + KP   + ++A+V A     R  
Sbjct: 64  MLEKLREVSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTRED 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++      + V     + +V   +  L  +E  +L YL+ N    +++  I   ++G+
Sbjct: 124 LDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWGI 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   V+++I +LR+KL +K     + + R  GY  + 
Sbjct: 184 -DYYGDIRTVDTNIKRLREKLLDKSS--YIVTVRGSGYKFEV 222


>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+ 
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVN 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL +    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLD 222


>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
 gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 243

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      ++  ++      GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 PQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++         G  +    +    EW  + +R D+  ++  L       L 
Sbjct: 8   LVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRPDLVLLDVML--PDIDGLL 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L   +        +                +  DD V KP    E++AR+       R  
Sbjct: 66  LAERLVHAIGPVPVVFVTARDSTADKVAGLARGDDYVTKPFRMEELIARIQAVLRRSRGW 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R     + +  + R+    G    L   E R+L Y M N+G+ ++K QI   ++ 
Sbjct: 126 DAPRPRLTVADLELDEETREVWRAGRPIRLSPTEFRLLRYFMINQGRVLSKAQILDHVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N+VES++S LR+K+ +      + + R +GY +
Sbjct: 185 NYDFRGDANIVESYVSYLRRKI-DTTEPKLIHTLRGVGYVL 224


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  + +    L   +G  +             S     +  ++  L   G    E
Sbjct: 5   LIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLML--PGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + + +R  S VP+I ++   +    +   + G DD V KP          R +L R    
Sbjct: 63  VCKKLRQSSTVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   E G +R+  +     V G+   +P +E  +LEYLM N G+ + + Q+  
Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++GL D   +   ++ H+ +LR K+ +       + + R LGY  +
Sbjct: 183 RVWGL-DYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGYKFE 228


>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
 gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
          Length = 249

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G S+    + E    + ++   D+  ++           
Sbjct: 14  LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVM--MPKLDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I ++    +   +   + G DD V KP   RE+ AR+ +I RR++ 
Sbjct: 72  GVCQEIRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQT 131

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N + +              +  + +      E+  L   E  +LE L++  GK  ++++
Sbjct: 132 RNAKLKPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFSRSK 191

Query: 173 IFSAIYG----LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           I   ++G      +   +  +V+ HIS+LR KL +       + + R  GY
Sbjct: 192 ILKEVWGYKLSKHEPIADTRIVDVHISRLRAKLEDDPTNPTLILTARGTGY 242


>gi|309778806|ref|ZP_07673579.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
 gi|308922514|gb|EFP68138.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   +               E                 ++  ++  L   G+  
Sbjct: 1   MILIIEDEPKLAALMTDYLHAAHYETEWLADGTHATQRVRETAPELVLLDLML--PGKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S+VP++ ++        L   + G DD V KP   RE+         R  
Sbjct: 59  LEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPREL-VARIKTILRRV 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + +      ++G+   L   E R+L  L    G+ ++++ +   IY  
Sbjct: 118 QRGGGVPESALHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDD 177

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  V++HI  LR+K+     G + + S   +GY +D
Sbjct: 178 H-RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +        I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G       S             D+  ++           
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVM--MPELDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR   
Sbjct: 62  ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRRTAG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      +    +      + +   L  +E  IL  L+ +  +  ++ QI ++++G +
Sbjct: 122 GRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
               EE  V+SH+  +R+KLR       + + +   +GY  +
Sbjct: 181 LADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330]
 gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330]
 gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    S             D+  ++  L       L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N  +     G + V+ + R   +      L   E  IL  L++   K  +++ +   +
Sbjct: 121 LSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +      + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 239

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +                   D+  ++  L       +
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLML--PVMDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E  + I A   +P++ ++        +     G DD ++KP   RE              
Sbjct: 72  EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRRVDR 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +      ++   + G + +    R   + G+   L   E  +L  L       + + Q
Sbjct: 132 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D A     V+SH+  LR KL        + +   +GY+ +
Sbjct: 192 LLEEVWDWVD-ASSTRTVDSHVKALRHKLGAST----IRTVHGVGYAFE 235


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +    D    +E  +  +    L      D+  ++  L       +
Sbjct: 3   ILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVML--PKMDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +R+     P++ I+   +++  +   D G DD + KP   +E+ ARV A + R  
Sbjct: 61  TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +         Q ++ PL  +E  +LE+ + +  +   + Q+   ++ 
Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 180 PFERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRL 221


>gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp.
           ORS278]
 gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 85/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  ++             +   D   +   ++  GE  L
Sbjct: 7   LLIIEDDIEIRSLLRDHLAREGFRVD-VGDGGAALDRFRNTFGDPDLVVLDIMLPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S+VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 66  SICRRLRAASRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRRAEP 125

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +        +                Q    PL   E  +L   +    + +++ Q+   
Sbjct: 126 APLENRRFLVNATLTVDLDKREIAHAQDGALPLTSAEFELLGCFLVRPNRVLSRDQLMDW 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G       +  ++  +S+LRKK+      + + + R  GY  
Sbjct: 186 TRGR-QADPLDRTIDVQVSRLRKKIERDGEEELIKTVRSAGYIF 228


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E       S   D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G + + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A  G +G +++  ++     W           ++  L   G    
Sbjct: 4   ILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIML--PGLNGY 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRL 119
            + R +R      P++ ++        ++  D+G DD + KP  +   +    A I R  
Sbjct: 62  RVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +    R     G    L  +E  +L YLM   G+ V K ++   ++ 
Sbjct: 122 ATRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            F  +   N+VE H+S LR+K+    G + + + R  GY
Sbjct: 182 -FAASATANLVEVHVSALRRKIDVPFGAETIRTVRGAGY 219


>gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       +    ++          L      D+  ++  L   G    
Sbjct: 3   ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVML--PGVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            +   +RA    P++ ++   +++  +   + G DD + KP    E+LARV A + R   
Sbjct: 61  GILAAVRARKNTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGRA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R  +  G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  + +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPYDTKLLHTVRGMGYVLE 220


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F      +      +    L      D+  ++  + G  G +V
Sbjct: 6   LLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R     + +P+I ++        +   ++G DD V KP   RE++ARV A+ RR++
Sbjct: 66  CRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRRIR 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S  +     I +       +  G    +   E R+L +LM    +  ++ ++   I+
Sbjct: 126 PALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDYIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  +E   V+ HI +LRK L      D + + R  GY++D
Sbjct: 186 GQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALD 227


>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++   A     G ++    +              +  ++  L        
Sbjct: 7   LLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVML--PDFDGF 64

Query: 62  ELPRIIRAHS------QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVA 113
           E+ R +R H         P++ ++   + +  +    +G DD V KP +  E  +  R  
Sbjct: 65  EVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + ++ R   G + +  D       G    L   E  +L  LM N G+ ++K+Q+
Sbjct: 125 LRRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +D   ++++V S+IS LR+K+ +      + + R  GY +
Sbjct: 185 LELVW-QYDFGGDDSIVASYISYLRRKV-DLDEPKLIHTVRGTGYVL 229


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       + +      ++   D+  +   L+      +
Sbjct: 18  ILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTT-PDIGLVILDLMMPEMDGM 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + IR  S +P++ +S   +    +    +G DD V KP +  E++ARV         
Sbjct: 77  EVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSEG 136

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +                  + G++  L   E  IL  L ++  +  +   IF 
Sbjct: 137 QMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDIFE 196

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 197 RVW-QQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 242


>gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +           D++ +   ++      +
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E   +         +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 EVTNTEPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
 gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R  R  S   ++P+I ++        +   ++GVDD V KP   RE+    R     
Sbjct: 63  DLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +                 DV  ++  L   G+   
Sbjct: 4   ILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLML--PGKDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    VP++ +S        +   + G DD + KP    E++AR+ +  RR + 
Sbjct: 62  EIIREIREKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRRYER 121

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + + +      + G+   +  RE  +L +L +N G   +K  I  
Sbjct: 122 LKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEHILV 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+G  D   +   V  HI K+RKK+  +    + +++    GY  + 
Sbjct: 182 SIWG-DDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGYRFNK 228


>gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
 gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +                +  +  ++          +
Sbjct: 8   ILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKKAKKKKPHLVILDVM--MPEMDGI 65

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115
           E    IR         +  ++      + +  FD+G DD + KP+  + ++++V      
Sbjct: 66  EACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKVKALLRR 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++      N  + G I +  D       G    LPR+E  +L  L +   K   +  I +
Sbjct: 126 FKSNASEKNIYKIGGIVINRDEYKISSDGIEMTLPRKEFELLSLLTSEPNKVFKRDDILN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  V    ++ HI KLR+KL +        + + +GY  
Sbjct: 186 TVWGN-EVVVGGRTIDVHIRKLREKLGDDK----FKTVKGVGYKF 225


>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
 gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A    
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALNGDKVIDANGLILDPVSQRVSFGSNILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGADRFVQTVRGTGYRF 227


>gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 250

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G                   + D+  ++  L       +
Sbjct: 14  ILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQLKPDLIIMDIMLPI--MDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E  R I +   VP++ ++   +    +    +G DD + KP   RE++AR          
Sbjct: 72  EATRRIISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRVER 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+   +          G + +    R   +  +       E  +L  L  +      + +
Sbjct: 132 ASQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVFKREK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SHI  LR K+    G + + +   +GY+ +
Sbjct: 192 LLEEVWDWPDASG-TRTVDSHIKSLRHKI----GSEWIRTVHGIGYAFE 235


>gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I  R   
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + +     F      +      +    L      D+  ++  + G  G +V
Sbjct: 6   LLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R     + +P+I ++        +   ++G DD V KP   RE++ARV A+ RR++
Sbjct: 66  CRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRRIR 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S  +     I +       +  G    +   E R+L +LM    +  ++ ++   I+
Sbjct: 126 PALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDYIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  +E   V+ HI +LRK L      D + + R  GY++D
Sbjct: 186 GQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALD 227


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G                S    D+  ++  L   G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLML--PGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ + +R  S VP+I ++   S    +   + G DD V KP   R               
Sbjct: 62  DVCKELRLVSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGD 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A        +   E G +R+  D     V G+   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TEAEAAEDDTDDQILEGGRVRMDVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRHLVTVRGLGYKYE 231


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +   ++           R D+  ++  L        
Sbjct: 10  LLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVML--PDMDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   SQ P++ ++   + +  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  EIVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTA 127

Query: 121 VSNNRAETGPIRVFS----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                              +  +    GE   L   E ++L +LM N G+ ++K QI   
Sbjct: 128 GDPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDH 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++          +VES++S LR+K+ +K     + + R +GY +
Sbjct: 188 VWDHVRGEG---IVESYVSALRRKI-DKDRPRLIHTIRGVGYVM 227


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +      L      D+  ++  L        
Sbjct: 14  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVML--PDMDGF 71

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
            + R + +A   +P++ ++        +     G DD V KP         I A +   +
Sbjct: 72  TVTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +     G + +  D  +    G    L   E ++L YLM N  + ++K+QI   
Sbjct: 132 ALDEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDH 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+      D             + +KR +GY +
Sbjct: 192 VW-EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYML 246


>gi|302867454|ref|YP_003836091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506136|ref|YP_004085023.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570313|gb|ADL46515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412755|gb|ADU10872.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++        ++G    G  + E     Q     D   ++  L   G    +
Sbjct: 5   LVIEDDDRIRLALQLALEEEGYEAYGAPTAEDGLRRQREKPADYVLVDLML--PGMNGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R +R    VP++ IS        +   ++G DD V KP+  +E+ AR+ A+ RR++  
Sbjct: 63  CIRQLRRDDDVPVVVISARDDTHDIVAALEAGADDYVVKPVAIKELSARLRALRRRVRTV 122

Query: 123 NNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                              +    G+  P+ R E R+L  L  + G+ +++ Q+ S ++G
Sbjct: 123 AGPVPAQFFGDLEISAEAGEVRRSGQPVPVTRTEFRLLCELAEHAGRVLSRQQLLSRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              E  +E +V+ H+ +LR+K+  +      + + R LGY +
Sbjct: 183 Y--ETGDERLVDVHVGRLRQKIESDPANPRHLVTLRGLGYKL 222


>gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +      +  +  +  ++  +       L
Sbjct: 4   IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMV--PRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEDQSLFRMDKAQQRIWYQQKPLNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+ +        + V +   +GY  ++
Sbjct: 181 SFEVADRVIDSHIKNLRRKISDAAETGNRHEWVQAVYGVGYRFEY 225


>gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
 gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
          Length = 231

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + D        +G  +    + +       +   D+   +  +    G   
Sbjct: 4   ILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDGYDF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117
           ++    +R     P I I+        +     G DD + KP   RE+  RV       +
Sbjct: 64  IDAVLQLRE--DQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLLRRIQ 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   +     P  +        +  +   L  +E ++L   + N G+  AK+++F  I
Sbjct: 122 PKKAGQSVLSYAPFAIDEGQHRVTLYDQPLQLSLKEFQLLALFLKNPGRVFAKSELFLKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220
           +   D   + N +  HI  LR KL    G  P   +++   LGY +
Sbjct: 182 W-ETDYMEDANTLNVHIHSLRDKLAKLAGQRPYPKIETVWGLGYRL 226


>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R  R  S   ++P+I ++        +   ++GVDD V KP   RE+    R     
Sbjct: 63  DLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++ G    F  +   +E     E       S +  +  ++  L    +   
Sbjct: 6   ILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVML--PKKSGF 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----------HHREIL 109
           E+ RIIR  H +  +I ++      + +   D G DD V KP              R I 
Sbjct: 64  EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRID 123

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  A   +   S +  +   I +          G    L  RE +IL+Y    RG+ V 
Sbjct: 124 LQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVL 183

Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +  +   ++G   +       +++HI  LR+KL +       + S R  GY  D
Sbjct: 184 REDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFD 237


>gi|228908610|ref|ZP_04072448.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228851026|gb|EEM95842.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQMFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDMVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++          +G  +                  D+  ++  L   G   LE
Sbjct: 8   LVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVML--PGYDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R I+A   VP++ ++        L     G DD + KP   RE++ARV A+ RR++  
Sbjct: 66  VCRRIQAVRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRRVERA 125

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     AE G +R+    R   V G    L   E  +L  L A+ G  V + ++ +
Sbjct: 126 AELAGAPRRTAEIGGLRMDPAARRVWVDGSEVRLTPTEFDLLVCLAADPGAVVTRERLLA 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D +     V+SH+  LR K+ +      V +   +GY+++
Sbjct: 186 EVWGWNDASG-TRTVDSHVKGLRAKIGSA----RVRTVHGVGYALE 226


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D    L   +G  ++  ++          +  ++  ++  L        
Sbjct: 5   ILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNL--PDIAGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           +L + IR +S++P++ +S   S+   +   + G DD + KP  + E++        R A 
Sbjct: 63  QLCKAIRKNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y   +   +        +  +    +   EV     +E  I  YL+ N+GK V++ ++ 
Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           + ++G  +       ++ HI  +R+K+     G   + +   +GY ++ 
Sbjct: 183 NELWGKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLEE 231


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  +D   +++  +     +G  ++G            S   DV  ++      G   L
Sbjct: 3   ILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIM--MPGIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     +              +G     L  RE  +LE L+ ++G  +++TQ+ + ++ 
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N+V+ +I  LRKK+ +      + + R  GY++
Sbjct: 181 -FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220


>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 239

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +    S        ++ R D+  ++  L       L
Sbjct: 8   LLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIML--PDGDGL 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
           EL R  R    +VP++ ++        +     G DD V KP    E++A      R   
Sbjct: 66  ELCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTR 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +             + +          G+   L   E R+L YL+ N  + +++ QI 
Sbjct: 126 REQAADTGTAPLTFADLTLDETTHSVTRAGQHVELAPTEYRLLRYLLVNPNRVLSREQIL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++   D      VV+ ++S LR+KL    G   + ++R  GY++
Sbjct: 186 DAVWDT-DYRGGATVVDQYVSYLRRKL-APYGPPLIHTQRGFGYAL 229


>gi|229145440|ref|ZP_04273826.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638016|gb|EEK94460.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      D + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLEE 212


>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +               +  D+  ++  L       +
Sbjct: 10  ILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWML--PRLSGI 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           E+ R +R +H+ VP+I ++    +   +   DSG +D + KP      +      I    
Sbjct: 68  EICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQ 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +      + +    R+      +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 128 EPNADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL ++     + + R +GY +
Sbjct: 188 -YDFMGDSNIIEVYVRYLRIKLESEGESRLIQTVRSVGYVL 227


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +F D G  +    + E       +    V  I   ++       
Sbjct: 5   ILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN---VDLIILDVMMPQMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L ++IR     P++ +S   S    +  F  G DD + KP   +E++ARV A  RR + 
Sbjct: 62  DLCKVIREQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQR 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +     D  + G+   L  +E +ILE L  N G+  +K QI+  I
Sbjct: 122 DRVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G+ D   + N +  HI+ LR KL + +    + +   +GY ++ 
Sbjct: 182 WGI-DAMGDLNTIIVHINNLRAKLTSGMSTYHIKTVWGVGYKLEK 225


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++    +   +G  ++   S        S    D+  ++      G    E
Sbjct: 5   LIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLM--MPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRGNVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPE 122

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +         R+  +  +  V+G    L  +E  +LE L+ N G+ + +  +   ++
Sbjct: 123 IEVSPDVLEESGVRMDVERHEVSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   ++ HI +LR K+         + + R LGY  
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEKDSSRPVRITTVRGLGYKF 224


>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +           +   AR  ++ ++          +
Sbjct: 4   ILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIM--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYTT 121

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +      +       +  + ++  V GE   L   E  IL +L+ N+GK  +  QI+ 
Sbjct: 122 LGSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+        +N +  HI  +R+K+  N      +     +GY I+
Sbjct: 182 HIWNESVGGRSDNTIAVHIRHIREKIEINPKDPKFLKVVWGVGYKIE 228


>gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +    S    E L      D+   +  L    E   
Sbjct: 3   LLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEAGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R       I                   DD + KP    E++AR+ A+ RR ++
Sbjct: 63  ELAQALRESGFHQPILFLTAREALPDRVRGLEWGDDYLPKPFALAELVARLKALGRRGEI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                +  P    +       +      L  +E  +LE L  N+G+   + +I   I+G 
Sbjct: 123 KPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + N+++ ++  LRK+L      D +++ R +GY +
Sbjct: 182 PGFEADSNLIDVYVKNLRKRLGE----DVIETVRGVGYRL 217


>gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94]
 gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94]
          Length = 260

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 239

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +                   D+  ++  L       +
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLML--PVMDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E  + I A   +P++ ++        +     G DD ++KP   RE              
Sbjct: 72  EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDR 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +      ++   + G + +    R   + G+   L   E  +L  L       + + Q
Sbjct: 132 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D A     V+SH+  LR KL        + +   +GY+ +
Sbjct: 192 LLEEVWDWVD-ASSTRTVDSHVKALRHKLGAST----IRTVHGVGYAFE 235


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P      V  +   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 45  ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLML--PGVDGL 102

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 103 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 162

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 163 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 222

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 223 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 269


>gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 263

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++     F   G  +E  +     + L   A  D+  ++  L    G  +
Sbjct: 5   ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ I+     +  +  F+SG DD + KP    E++ RV A+ RR  
Sbjct: 65  CQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRRSD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +    +   I  +       +  +     E   L   E  +L  L+   G+ VA + I 
Sbjct: 125 RAPLSTKHSEILSYGPLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 82/226 (36%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++E     +       S   DV  ++           +
Sbjct: 5   LVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVM--MPRLSGYD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +    +  ++ ++    +   +   + G DD + KP   RE           +R  
Sbjct: 63  VCRKLENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTV 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              ++     N      + +    R    +G++  L  +E  ++  L  N  +  ++  +
Sbjct: 123 ENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ + D A     V+ H+ +LRKKL +    D + +   +GY 
Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGDL--HDVIQTVYGIGYK 225


>gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    S             D+  ++  L       L
Sbjct: 5   ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 63  TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 122

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N  +     G + V+ + R   +      L   E  IL  L++   K  +++ +   +
Sbjct: 123 LSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +      + +    GY  
Sbjct: 183 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 225


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
          Length = 240

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++      G     
Sbjct: 17  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 74

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           + R +RA     P + ++   SLQ  +     G DD V KP        R  +    A  
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++  LR+K+ +      + + R +GY +
Sbjct: 195 VW-RYDFGGDVNVVESYVLYLRRKI-DTGEKRLLHTLRGVGYVL 236


>gi|331092529|ref|ZP_08341351.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400750|gb|EGG80353.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        D   +  F + +       + + D++ ++  L        
Sbjct: 3   ILVVDDEREIADVVELYLQSDQYHIFKFYTGQEALDCIDNTKIDLALLDVML--PDIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  EILKRIREKYTFPVIMLTAKIEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+  +     +            +     +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 121 YNDVGKNEGDIIDFGALFLNRTSHECVYYDKELTLTPIEFDILWLLCENRGRVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
             ++         N V  HI  LR+K+    G  D + +   +GY ++ 
Sbjct: 181 RTVWKEQYYKNSNNTVMVHIRHLREKMSEPTGKSDFIKTVWGVGYKVEE 229


>gi|154688062|ref|YP_001423223.1| YxdJ [Bacillus amyloliquefaciens FZB42]
 gi|154353913|gb|ABS75992.1| YxdJ [Bacillus amyloliquefaciens FZB42]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G      +       +    + DV  ++  L        
Sbjct: 4   IMIVEDSEDIRGLLQNYLEKYGYQTVAADDFTAVLDVFLREKPDVVLLDINL--PSYDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR HS  P+I IS        +   ++G DD + KP  +  +        R A  
Sbjct: 62  YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      E   +++F +  +   Q E   L ++E ++LE L+    K   + ++  
Sbjct: 122 EYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTGRDRLME 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   D  V++N +  +I++LRKKLR       ++S R  GY +
Sbjct: 182 KTWDT-DIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQL 225


>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
           tenjimariensis]
          Length = 234

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  L   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVML--PGMDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 NNRAETGPIRV---------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                  P                   ++G +    G    L   E R+L    +  G  
Sbjct: 125 GGAESPDPEGRGQAERGLLVFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSAPGTV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 LSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 232


>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
 gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
 gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 237

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 10/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            +  R      Q+P+I ++     Q  +   D G DD V KP   +E        +  R 
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   +   N           +             L   E R+L +LM +  +  +++Q
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   ++G     VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 234


>gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    S             D+  ++  L       L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N  +     G + V+ + R   +      L   E  IL  L++   K  +++ +   +
Sbjct: 121 LSNPNKLSSSNGELIVYPESRHVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +      + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
 gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
          Length = 258

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+          G  +      +    +      D+  ++           
Sbjct: 16  ILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVM--MPKRDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S  P+I ++    +   +     G DD + KP   +E+  R+  I RR + 
Sbjct: 74  YVCQEIRRESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQK 133

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +           T  + + ++ R      +   L   E  +LE L+   G+ +++T I +
Sbjct: 134 TLPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVNQAGQPLSRTDILT 193

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           AI+G       +  VV+ H+S+LR K+  +    + + ++R  GY  
Sbjct: 194 AIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF 240


>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 270

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +    + +      ++ + D+  ++  L        E
Sbjct: 24  LVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVML--PDADGFE 81

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   +V ++ ++   + +  +     G DD + KP    E++ARV A+ RR + 
Sbjct: 82  VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D        +   L   E  +L Y + N  + +++ QI 
Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +A++   D   E  VV+ ++S LR+KL    G   + ++R  GY++
Sbjct: 202 AAVWDR-DFDGEPTVVDQYVSYLRRKLGQH-GPPLIHTQRGFGYAL 245


>gi|313819282|gb|EFS56996.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314960588|gb|EFT04690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315085982|gb|EFT57958.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +   ++  +V  H+ +LR K+  N      + + R +GY I+
Sbjct: 188 G-YTNIIDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
           [Alicycliphilus denitrificans BC]
 gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
           denitrificans K601]
 gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alicycliphilus denitrificans BC]
 gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +        +G +       E  +    +   DV  ++  L   G   L+
Sbjct: 8   LVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWML--PGMSGLQ 65

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  R       VP++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 66  LARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +    G + + +       QG+   L   E ++L YLM +  +  ++ Q+   I
Sbjct: 126 APEQVADSVAIGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSRAQLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 186 WGDHVY-IEERTVDVHVKRLREALGEASA--MLETVRGAGYRL 225


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++D         G  +   +              D+  ++  L        
Sbjct: 14  LVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVML--PDMDGF 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R +R    + P++ ++    +   +     G DD V KP         +  V    +
Sbjct: 72  TVTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQ 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D R+    G    L   E ++L YLM N G+ ++KTQI   +
Sbjct: 132 AHDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-----DPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+             + ++R +GY +
Sbjct: 192 W-EYDWRGESAIVESYISYLRRKIDVPGPDGAPTVPLIHTRRGIGYVL 238


>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
 gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++     L  + G  +   N               +  ++           
Sbjct: 5   ILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIM--MPKIDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +  IIR +S +P+I ++     +  +  F+   DD + KP   + +L R+       + 
Sbjct: 63  AVCEIIRKNSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKE 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N   +  I++ ++    EV G+   L + E  ILE  M +R + + +  + + ++
Sbjct: 123 KVENHNIFISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +E  V  H+  LR+KL      D + + R +GY  +
Sbjct: 183 G-YDFTGDEKAVNIHVMNLRRKLD----IDCIQTVRGVGYKFE 220


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++ +  +          L      D+  ++          +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIM--MPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D     V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 ETVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|218897940|ref|YP_002446351.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901405|ref|ZP_04065593.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228965805|ref|ZP_04126879.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218545632|gb|ACK98026.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228793796|gb|EEM41325.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228858229|gb|EEN02701.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQMFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|85375211|ref|YP_459273.1| DNA-binding response regulator [Erythrobacter litoralis HTCC2594]
 gi|84788294|gb|ABC64476.1| DNA-binding response regulator [Erythrobacter litoralis HTCC2594]
          Length = 248

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++         G  +   +S      +  + R D++ ++      GE  L
Sbjct: 13  ILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIM--MPGEDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +     +P+I ++        +   + G DD V KP   RE++AR+ ++ RR   
Sbjct: 71  SLTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGR 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
           +          VF   +   ++  +             E R+L   + +  K + + ++ 
Sbjct: 131 APAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDRLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             + G      +   V++ +S+LR+K+         + + R  GY  
Sbjct: 191 DLVQGREAHLFD-RAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRF 236


>gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 255

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++         G  ++        + L    + D+  ++  L    G  +
Sbjct: 5   ILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLILLDLMLPNVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     S +P++ I+   + +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALLRRTN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          GP+ +  +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPLGSTGHPEILSYGPMTLVPERFEAIWFECPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLE 232


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 40  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR    
Sbjct: 98  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       ++     G + V ++G +    GE   L   E R+L    A  G  ++
Sbjct: 158 GGGARQAVEEEAASGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLS 217

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 218 RDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 263


>gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia sp. Ejp617]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +++    +   +          +    L      D+  ++  L  G G + 
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGSGIQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +           +   +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PLAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELNGHDRMVQTVRGTGYRF 225


>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  + G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVNFGNNILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPYGVDRFVQTVRGTGYRF 227


>gi|228921532|ref|ZP_04084854.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228939981|ref|ZP_04102555.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228953198|ref|ZP_04115252.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228959096|ref|ZP_04120796.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228972876|ref|ZP_04133471.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979457|ref|ZP_04139789.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229070339|ref|ZP_04203586.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229080052|ref|ZP_04212580.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|229110313|ref|ZP_04239885.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|229179150|ref|ZP_04306505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|229190963|ref|ZP_04317953.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592361|gb|EEK50190.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228604305|gb|EEK61771.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228673053|gb|EEL28325.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228703176|gb|EEL55634.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228712777|gb|EEL64705.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228780275|gb|EEM28510.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228786749|gb|EEM34733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228800605|gb|EEM47522.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228806425|gb|EEM52990.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228819593|gb|EEM65644.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228838151|gb|EEM83470.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|326940635|gb|AEA16531.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++   D+  ++  L        
Sbjct: 30  LLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVML--PDMDGF 87

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118
            + R +  A +++P++ ++    ++  +     G DD V KP          R       
Sbjct: 88  TVTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 147

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V +       + +  D  +    G    L   E ++L YLM N G+ V+K QI   ++
Sbjct: 148 DSVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+KL  ++   D + ++R +GY +
Sbjct: 208 -EYDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYML 249


>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
 gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD + ++D                   +    L    +  +  ++  L G  G  +
Sbjct: 7   ILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSGIDL 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +     + +P+I ++        +   + G DD + KP   RE++AR+ A      
Sbjct: 67  ARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTE 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   +R+   G    +  E   +   E R+L + + ++ +   + Q+   ++
Sbjct: 127 GISAAELIEVEGLRMDPVGHVVTINNEPLQMGPTEYRLLAFFLTHQDRVYTRGQLLDHVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L        + + R  GY  
Sbjct: 187 G-GNVYVEERTVDVHIRRLRKAL--TSHDRFIQTVRGAGYRF 225


>gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 6/226 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D   +++       + G  ++GF   +         + D++ ++  L    G +
Sbjct: 3   LIYVVEDDKNIREIESFALKNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVMLPDEDGLE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           ++   R  R    +P++ ++   +    +   D G DD + KP    E+++RV A     
Sbjct: 63  IVRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLRRS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + GP+ +  + R     G+   L  +E  +L  LM N G  +++  I + +
Sbjct: 123 QIIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILNRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D   E   ++ HI  LRKKL+       + + R +GY  + N
Sbjct: 183 WGT-DYEGESRTIDMHIKTLRKKLKEAGA--MIQTVRNVGYVFNEN 225


>gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 640

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + D            ++     E  E   +    D   ++  L     + +
Sbjct: 29  ILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGL--PDIEGI 86

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R      P++ ++   + +  +   ++G DD V KP    E+ AR+ A   R  
Sbjct: 87  SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +RV  +  +   Q     +  +E  +LE  + +  +  +   I   ++ 
Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D    E+ V +H+  LR+KL+      D + +   LGY +
Sbjct: 207 FED-PPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRL 247



 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63
           IDD   V      +    G       + +       S R D+  I+  +    G ++  +
Sbjct: 517 IDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLEICRV 576

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
            R      Q+P++ +S +    T    F+ G DD ++K   
Sbjct: 577 LRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTM 617


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +  G  G  +    +           R D+  ++  L        
Sbjct: 13  ILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVML--PDLDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   + P++ ++    +   +    +G DD V KP    E+L R+ AI RR  
Sbjct: 71  EVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + +     +    G+  PL   E ++L +LM N  + ++K+
Sbjct: 131 HDVPYEMGEDEAEVLRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLSKS 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G +D + +  +VE+++  LR+K+ + L    + ++R +GY +
Sbjct: 191 QILDRVWG-YDFSGDGRIVETYVRYLRRKI-DHLDPPLIHTQRGVGYCL 237


>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
 gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
          Length = 249

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D+  +          +  S++     +           D   ++          L
Sbjct: 22  ILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIM--MPVMDGL 79

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           ++ R +R   +  P++ ++   S++  +   D+G DD + KP    E+LAR+  +  +  
Sbjct: 80  QVLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKPA 139

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V  N    G + V  D +     G+   L  +E  IL Y++ N G  +++ ++   I+ 
Sbjct: 140 AVKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIW- 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+ +      + + R  GY +
Sbjct: 199 NYDYTGSSNVIDVYIRYLRKKIDDGYEKKLIHTVRGAGYVL 239


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D       ++G S++  ++ E    +  ++  D+  ++  L   G    
Sbjct: 17  ILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLML--PGISGY 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I  + ++P+I ++    +   +   + G DD + KP   RE++AR+    RR+K 
Sbjct: 75  DVCREINPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRRIKE 134

Query: 122 SNNRAETGPIRVFSDGRDP--------------EVQGEVFPLPRRERRILEYLMANRGKR 167
            + +         S                       E+  L  +E  +L +L  N+   
Sbjct: 135 LDKQYYEDKNGEDSQNIMKIDENIKIFIDSREIFKDEEIINLKPKEYDLLYFLARNKNIV 194

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G +D   +   V+ H+ ++RKKL        + +   +GY +
Sbjct: 195 FSREQLLDDIWG-YDFLGDSRTVDVHVQRIRKKLGVTGKNSIIKTVFGVGYKM 246


>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
 gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           +  +IIR  S +P++ IS              G DD + KP    E+       + R   
Sbjct: 62  DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    +N  K   K QI+
Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++       ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G ++    + E    ++     D+  ++  +  K     
Sbjct: 4   ILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAV-IKVDKNIDLIILDIMMPIK--SGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           +    IR  +  P++ ++           F SG DD ++KP  + E        +     
Sbjct: 61  KACVEIREKTSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLRRYYV 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +    SN       + +     +  +  +   L   E RIL  +  NR K  +   +
Sbjct: 121 YKGKEKVNSNEDINIDGLTINISSNEVFIDNKEIILTETEYRILLLMAQNRKKVFSAQNL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++         N +  HI  LR+KL         + +    GY I+
Sbjct: 181 YESVWKEPYFYSCNNTIMVHIRNLRRKLEREPQNPKYIKTVWGKGYRIE 229


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V+      F   G  +              +       ++  L   G+   
Sbjct: 4   ILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRL--PGKSGQ 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++ R IR  S   P++ +S    +   +   + G DD V KP   RE+LARV    R   
Sbjct: 62  DICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRRLI 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I+V     +    G+   L  +E ++L + + N+ + V++ ++ + +
Sbjct: 122 PSIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNELLNEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G +        V++HI +LR+KL  +        +    GY  
Sbjct: 182 WG-YHSYPTTRTVDTHILRLRQKLERDPADPIHFRTVHGTGYKF 224


>gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +              D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIML--PGLNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV        
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   ++     G +RV +  R   +  +   L  +E  +LE L+   G+ V+K +I   +
Sbjct: 121 QGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  F    + N+VE ++S LR+KLR       + + R  GY ++
Sbjct: 181 WD-FAYDGDPNIVEVYVSALRRKLRA----GLIRTVRGAGYRLE 219


>gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 265

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     +  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124

Query: 121 VSNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   +      + S           +     +   L   E  +L  L+   G+ VA + 
Sbjct: 125 RAPVGSSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTVAPSL 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G  +E     E           DV  ++           
Sbjct: 5   ILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVM--MPKLGGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           E+ R + +   + ++ ++    +   +   + G DD ++KP          + L R    
Sbjct: 63  EVCRRLESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+RV    R  E+      L  +E  +L  L+++ G+   + ++  
Sbjct: 123 EGAPAPEGTEVVLGPLRVRPSSRTAELGAIALDLTPKEFDVLALLVSHAGRVYTRDELLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++  FD       V+ HI +LRKKL        + +   +GY  + 
Sbjct: 183 QVWS-FDYVGGTRTVDIHIQRLRKKLE--PHQAILQTVYGIGYKAEK 226


>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--ARHIGTVIRVGYKFEE 225


>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
 gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +               +  ++  D+  ++  L   G   +
Sbjct: 5   ILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLML--PGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IRA S VP++ ++        +   ++G DD V KP    E++ARV A  R +  
Sbjct: 63  QVCQQIRAESDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMDR 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  T G I +   G      GE   L   E  +L  L  +  +  ++ ++   ++G 
Sbjct: 123 GVTQEITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YPHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGYK 221


>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  TVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ +
Sbjct: 123 SAVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
 gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
 gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 243

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++D        +G  +      +    +      D+  ++      GE  L 
Sbjct: 12  LVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLM--MPGEDGLS 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ +
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 190 LALLARGR-EFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +   ++     +       +   D+  ++  L   G   L+
Sbjct: 4   LLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLML--PGASGLD 61

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR +S     P+I ++      T +  F  G DD V KP   +E+LAR+ A+ RR 
Sbjct: 62  ICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRRA 121

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   I      +   V G    L + E ++LE+ + +  +  ++ ++   I+
Sbjct: 122 GYVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEKIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D       V+ +IS+LRKKL +K     + +   LGY +
Sbjct: 182 G-HDHNETTRTVDVYISRLRKKLGDKG--KYLKTLPRLGYKL 220


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++          +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIM--MPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E            V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +              + + DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I      +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGASG--EYIKTIYGVGYKLD 223


>gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +           D++ +   ++      +
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +E   + V       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 EVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +          +G  +E  ++ E       S    +  ++  L   G   L
Sbjct: 4   ILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIML--PGISGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ R +R  S++P++ ++        +   + G DD V KP + RE    +  +    + 
Sbjct: 62  DVLRRLRPQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRRVQG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R  +  G+       E  +L YL+ N G  V + ++   + 
Sbjct: 122 GQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTSVEFDLLRYLLENAGNVVPREELAERVL 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G    +  +  ++ HISK+R+KL ++   + + + R  GY
Sbjct: 182 GRR-FSPFDRSIDMHISKIRRKLLDESD-ELIKTVRGTGY 219


>gi|28798044|emb|CAD69002.1| beta-lactamase response regulator [Aeromonas hydrophila]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D A + D  I     DG  +E F+  +         R D   ++  L        
Sbjct: 6   IWLVEDEASIADTLIYALQTDGFEVEWFSLGQPLLARLEQTRPDFLILDVGL--PDISGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +RA    PL+ ++        L   + G DD V KP   RE+      +  R   
Sbjct: 64  ELCKQVRALCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-RARVRVILRRSQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +  + +  +       G+   L R E  +L+ LM   G+  ++ Q+   ++   
Sbjct: 123 PTTPPPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSAA 182

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            E+++   V++HI  +R KLR      + + + R  GYS++
Sbjct: 183 GESLD-RTVDTHIKTIRAKLRERDPHANLILTHRGFGYSLE 222


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +       F   G  +E  +              D+  ++  L        
Sbjct: 27  ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVML--PVLDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++   S    +   +SG DD + KP    E+LAR+ A+ RR   
Sbjct: 85  EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGH 144

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++            R+    R     GE   +   E  ILE L+ + G+ V + ++ + +
Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y       E   ++ HIS LRKKL        + + R +GY  
Sbjct: 205 YQRPATPYE-RSLDVHISHLRKKLERD-DRSVIRTIRGVGYQF 245


>gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +    + D+  I   ++       
Sbjct: 6   ILVVDDEARMRKLVKDFLTIKGFIVLEAQDGEQALKVFDENK-DIKLILLDVMMPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E   ++R +S+VP+I ++     +  L  +  GVD+ + KP   + ++ARV A+  R + 
Sbjct: 65  ETLEVLRQYSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTIG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S  +   G I +    R   +  +   L  +E  +L Y + N+G  +++ +I S+++  
Sbjct: 125 ESEEKLVAGAIEIDKVARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSSVW-N 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  +   D + +   +GY  + 
Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGERG--DYIKTVWGMGYKFEV 223


>gi|315221901|ref|ZP_07863812.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188867|gb|EFU22571.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A+++     +    G  +           + +     +  ++  L        
Sbjct: 8   ILLVEDDAVIRQQVKKMLEQWGFEVVAVEDFMQVLTIFAKEEPHLVLMDIGLPL--FNGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP  +  +LA+V         
Sbjct: 66  HWCQEIRKISKVPIMFLSSRYQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYE 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   +GEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 126 FGTDQSLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 186 -NSDFFIDDNTLSVNVARLRKKLEEVGLKNFIETKKGIGYRL 226


>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 236

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +E          L ++   D+  ++  L        
Sbjct: 9   ILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLML--PYVDGY 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
           E+ R +RA S   P++ ++   + +  +   ++G DD + KP H +E+      + +   
Sbjct: 67  EVAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQ 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y+ +         G   V       + + E F L  RE  +L+YL+ + G+ V++ ++ 
Sbjct: 127 WYQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +  V+   V++ I++LRK    +    + + S R +GY  
Sbjct: 187 ENVW-QVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGYQF 232


>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas sp. SN2]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     +L    G S++  ++ E   +L +    D++ I+  L        
Sbjct: 3   ILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGL--PKMDGF 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R   +   + P++ ++     Q  ++  D+G DD + KP H+ E+LARV A+ RR  
Sbjct: 61  EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N           +   +  V      L   E +++EYLM N  K V+KT++   IY 
Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  ++ NV+E  + +LRKKL  +  F P+++ R  GY I+ N
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPENSFKPIETLRGRGYRINRN 223


>gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
 gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
          Length = 235

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G                     D+  ++  L    +  +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLML--PVKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R  S +P+I ++        L   + G DD + KP   RE++ARV   + R  +
Sbjct: 68  TVCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRFYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +       +   ++  L   E R+L+ L    GK + + Q+   +Y  
Sbjct: 128 PQDIVQNDKLVVIDEQAYQIQYNNKILDLTTAEFRLLKALATQPGKILTRDQLMDHLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL       + + S    GY  +
Sbjct: 188 Y-RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWE 228


>gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22]
 gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
 gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22]
 gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|332185911|ref|ZP_08387658.1| response regulator [Sphingomonas sp. S17]
 gi|332014269|gb|EGI56327.1| response regulator [Sphingomonas sp. S17]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++         G  +             ++   D+  ++      GE  L
Sbjct: 7   LLLVDDERSIREPLAVYLTKQGFRVTQAGDAASARTRLAAYAIDLVILDIM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R I A S+VP+I ++        +   + G DD V KP   RE+  R   + RR + 
Sbjct: 65  SLCRHIAATSEVPVILLTARAEETDRIVGLEMGADDYVVKPFSPRELATRAKVVLRRTQA 124

Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              R        ++              + +G    L   E  +L  L++   + + + Q
Sbjct: 125 GGARVHAPDSGSYAFAGWVLKSGERSLVDREGVSVMLSTGEYNLLLALVSRPRQVLTRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ +S+LR+K+  +    + + +    GY++
Sbjct: 185 LLDLTQGREAAAFD-RAIDNQVSRLRRKIEADPKSPEIIKTVWGGGYTL 232


>gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 235

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G                      +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +      +G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKRGKELTLTAKEIKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    +         S   D+  ++  L       L
Sbjct: 3   ILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLML--PDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++     +  L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIRESSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRSET 120

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N  +    +    ++ D R   +      L   E  IL  L +   K  ++  +   I
Sbjct: 121 LLNPNKLSINKGELLIYPDSRQVYLHQIELNLTTTEFDILYTLASTPNKVFSRGDLIEKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +    + + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIESDPKTPNYILTVHGTGYRF 223


>gi|229593016|ref|YP_002875135.1| DNA-binding response regulator CreB [Pseudomonas fluorescens SBW25]
 gi|229364882|emb|CAY52950.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 7/218 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +  +     Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGQEALAYQRQTPADLVILDIGL--PDITGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVTARVRAILKRIGP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S         +V  +      + +   L R E R+L+ L+    +  ++ Q+  A+ G+ 
Sbjct: 122 SA---APAVFQVDLERMQISYRSQPLSLTRHEFRLLQSLLEQPERVFSREQLLDAV-GVA 177

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            +A  E  ++SHI  LR KLR+     +P+ + R LGY
Sbjct: 178 ADAGYERNIDSHIKSLRSKLRSVAADAEPIQTHRGLGY 215


>gi|170724028|ref|YP_001751716.1| DNA-binding response regulator CreB [Pseudomonas putida W619]
 gi|169762031|gb|ACA75347.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G S             Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIYALQAEGHSTAWVTLGTAALEQQRQRPADLVILDIGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  DTCRQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                    +    +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RVEPPAETALFQLDTLRMLISYRSQPLSLTRHEFRLLQCLLTQPQRVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVAAHAEPIQTHRGLGY 219


>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 241

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    DG+     +  +    L    R D+  ++  L   G   ++
Sbjct: 15  LVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHL--PGMDGID 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R IR  SQ P+I ++        L     G DD V KP +  E            +  
Sbjct: 73  VLRAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQAR 132

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +     E       +   D E +    PL   E R+L  L A   +  +++ +
Sbjct: 133 KNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRRCFSRSHL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L +    E V++SH+SKLR+KL+       +++ R +GY +
Sbjct: 193 IEHC--LPESDALERVIDSHLSKLRRKLQLAGQEGLIETVRGIGYRL 237


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     +           D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLML--PSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +              + + DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +          +    R   V+G+   L  RE  + +  ++N  +   + ++   
Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 VWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 221


>gi|170755642|ref|YP_001780597.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120854|gb|ACA44690.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKTEPDIVILDIML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IR+ S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRSKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +    N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGELIELKPKELALITFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +   +           L          ++      G+   
Sbjct: 7   ILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVM--MPGQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           EL R IR+ S VP++ +S        +     G DD + K     EI            A
Sbjct: 65  ELCRTIRSSSSVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSSA 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +   ++    + G +++    R+  V G    L  RE  +L+  +    +  +   +
Sbjct: 125 QQEQERSLAVLDYDEGRLQINLSTREVFVDGTSISLTPREFELLQLFVERPRQVFSYDHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++   +   +++ V  H+S+LR K+  +      + +   +GY  +
Sbjct: 185 IDKLW---EGVGDKHTVRVHLSRLRDKIESDPAQPRYLINVWGVGYRFE 230


>gi|169828380|ref|YP_001698538.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992868|gb|ACA40408.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 212

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 88/217 (40%), Gaps = 11/217 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F  +G ++    + E    +    + D++ ++       +  L
Sbjct: 3   ILIADDELAMLKILQNYFQREGFTVFTATNGEEALAIFYQEKIDLAILDWM--MPKKDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R ++   ++ ++ ++   + +        G DD VNKP + + ++ R     ++L  
Sbjct: 61  MVCREMKQTQKIKVLLLTARDTGEDEFQALAEGADDYVNKPFYPKVLIMRA----KKLLQ 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   +      +     G    L + E  +L     NR + + + Q+   ++GL 
Sbjct: 117 IEAIQQLQNVSFDVTSKRVWRAGIEIELTKTEFELLRIFSQNRRQILTRDQLLDLVWGL- 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +   V++HI +LR+K+      + + + R +GY
Sbjct: 176 DYMGDARTVDTHIRRLREKIGE----NIIQTHRGIGY 208


>gi|160934057|ref|ZP_02081444.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753]
 gi|156866730|gb|EDO60102.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           +  S    +  I+          L
Sbjct: 5   ILVVDDDKEIVQAIAINLEQEGFRVFKAYDGLEALEIAMSQDLQLIIIDVM--MPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR     P++ +S        +     G DD + KP +  E++ARV +  RR   
Sbjct: 63  SAVLKIRERKNFPIMILSAKSEDTDKVLGLSMGADDYLTKPFNSMELIARVKSQVRRYTT 122

Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +              +    + R     GE   L   E +I + L+ N G+     +I
Sbjct: 123 LGDIHAKTGGKTIEIGRLCYDLETRSLFADGEPVHLTATESKIFDLLIRNAGRIFPAEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++     + E N V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 183 YERVWNEPAFSAE-NTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEK 231


>gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
 gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I  R   
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
           pseudintermedius ED99]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +       F  +   +E                 D+  ++  L       LE
Sbjct: 5   LIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLML--PEMDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           + + +R     P+I I+    +   +   D G DD + KP    E+     A +      
Sbjct: 63  VCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSDE 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E   I++         Q E   L + E  +L  L  N+ + + + QI   ++
Sbjct: 123 NVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 183 G-YESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRGVGYVI 223


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         +D   +   +S E           D+  ++      G+   
Sbjct: 5   ILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIM--MPGKNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I ++     +  +    SG DD + KP   R++ AR+ A  RR K 
Sbjct: 62  EVCNDIRDIVSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSA 176
           + N +E   +   +   +   +          L ++E  I+E+L  N G+  +K QI+  
Sbjct: 122 NTNNSEKANLYFKNISINLRNREVYCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++G +D   +   V  H+ K+R K++N     + + +   +GY  + 
Sbjct: 182 VWG-YDAEGDSASVAEHVKKIRHKIQNFDPEEEYISTVWGVGYKWEK 227


>gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
 gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +     F   G  +                + D+  ++          +
Sbjct: 21  ILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKA-EQQPDMILLDVN--MPELDGM 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ ++        +  F +G DD + KP    E+ ARVAA  RR   
Sbjct: 78  EVCRRIRDFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRRETR 137

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + +    R   V  E    P++E  I+E L AN G+   K +I+  ++
Sbjct: 138 RINGASVRFDKELSIDYSQRKVFVNKETLAFPKKEFAIIELLSANAGQVFDKERIYEKVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   + +VV  HI ++R +L      + +++    GY 
Sbjct: 198 G-YDGEGDSSVVAEHIRRIRARLSAVTDREYIETVWGCGYK 237


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +                  D+  ++  L   G   L
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWML--PGVSGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ R +RA     P+I ++    +   +   D+G DD V KP    E+    R      +
Sbjct: 62  EICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S +      + +     +      +  L  +E  +L+YL+ +  + + + +I   ++
Sbjct: 122 ETDSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NV+E +I  LR KL        + + R +GY +
Sbjct: 182 G-YDFMGDSNVIEVYIRYLRLKLEANNEKRLLQTVRGVGYVL 222


>gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23]
 gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23]
 gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W]
 gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +           D++ +   ++      +
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E   + V       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 EVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +   +D   +    + E    L +    ++  ++  +        
Sbjct: 4   ILIVEDEYKIRKIITSYLEED-YEVYEAENGEKALKLFADNNFNLIILDLMI--PKLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ + IR  SQ+P+I ++   S +  +D F+ G DD + KP   RE+ AR+         
Sbjct: 61  KVCQKIRQSSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLRRSND 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K S    + G I+++ +    +   +   L   E +IL  L+ N  + +++ Q+ + +
Sbjct: 121 SNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQLANKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            GL + +  +  +++HI  +RKKL+ K   + + +    GY  
Sbjct: 181 MGL-EFSGFDRTIDTHIKNIRKKLKLKKD-EYIVTVYGAGYKF 221


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D A +          +G ++   N+        S    D   ++  L    +   
Sbjct: 7   ILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGL--PDQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R   Q PL+ ++        +   + G DD   KP   REI+AR+ AI+RR+++
Sbjct: 65  EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124

Query: 122 SNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                 + P                       +  G++  L R E R+L  L+ +  K  
Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ Q+   I+   + ++E   V++HI  LR+KL+      DP+ + R  GYS+
Sbjct: 185 SRQQLMDHIWEHPEHSLE-RTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D+  + +           ++      +    L  + R D+  ++  L   G   L
Sbjct: 5   ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVML--PGIDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR--------- 111
           ++ + +R+     P++ ++   S    +   + G DD + KP   RE+ AR         
Sbjct: 63  QICQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVA 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       ++   G + +  +     +  E   L  +E  +L YL ++ G+  ++ 
Sbjct: 123 FNTQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+ SA++G +  +  E+ V SHI++LR KL  N      V +   +GY  
Sbjct: 183 QLLSAVWG-YHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKF 231


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +           D+  ++  L       +
Sbjct: 5   ILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLML--PKMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           E+ + IR  S+VP+I ++    +   +   D G DD + KP  + E++AR+       + 
Sbjct: 63  EVCKRIREFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        +++     +      +  L +RE  +L+YL+ N+G  +++ +I   ++G
Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+    +N+++ +I  LR K+        + + R LG+  
Sbjct: 183 -FEYIGNDNILDLYIKYLRDKIDKPYERKFIQTVRGLGFIF 222


>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
 gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R+    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
              +     ++ HIS LRKKL +       + + R +G+  + N
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225


>gi|317061728|ref|ZP_07926213.1| DNA-binding response regulator [Fusobacterium sp. D12]
 gi|313687404|gb|EFS24239.1| DNA-binding response regulator [Fusobacterium sp. D12]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +++     F  +G  +E  ++             D   ++  L    G ++ 
Sbjct: 9   LIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQLT 68

Query: 62  ELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           ++ R +      P  I ++     +  L+ F  G D+ V KP   RE +      +  ++
Sbjct: 69  KIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQNKI 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S N      + +         +G    L ++E  +L  L+ N+G  + + +I   ++G
Sbjct: 129 PHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDEVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                + +  V+ +ISKLR+KL        + + + +GY ++ 
Sbjct: 189 ST-YYIGDRTVDVYISKLREKL--PGISTSIKTVKGVGYKLEE 228


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  TVCRRIRKKSNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ +
Sbjct: 123 SAANVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +    +  ++G              +    + D+  ++  L   G    
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K 
Sbjct: 62  GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKP 121

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          + N  E G I +          G+   L   E  +L  L A  G+
Sbjct: 122 AAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++++ +   ++G ++ + +  +V  H+ +LR K+ +       V + R +GY  
Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|120403380|ref|YP_953209.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956198|gb|ABM13203.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 219

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   V          +G S+          +   +   D+  ++  L   G    
Sbjct: 4   ILIAEDEPRVSSFVRKGLSSNGYSVTLVTDGRSAYFSARNGGFDLMLLDTDL--PGMDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  S +P++ +     +  T    + G DD V KP    ++LARV       +
Sbjct: 62  AVLRRLRADGSPLPVVMLMSRAGVADTTAALEEGADDYVVKPFRFEDLLARVRLRLTAGR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G + +    R   V      L  RE ++ E  + + G+ +++ Q+ + ++G 
Sbjct: 122 AASTTLAYGSLLLDLRTRRAHVGDYAVDLSARECKLAETFLRHPGQVLSREQLLNQVWGR 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D     NVV+ ++  LR+KL    G +   + R +GY ++
Sbjct: 182 -DHETGSNVVDVYVRYLRRKL----GANRFATLRGMGYRLE 217


>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 283

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           ++G +++         W  +    D   ++  L   G    E
Sbjct: 33  LVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLML--PGLDGFE 90

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   +  P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  V
Sbjct: 91  VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGAV 150

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      R+          G    L  +E  +L  LM +  + + +T I   ++  
Sbjct: 151 ERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD- 209

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F      N+V+ ++  +R+K+    G   +++ R +GY +
Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRL 249


>gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  L   N  E         + DV  ++  L       +
Sbjct: 4   ILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVML--PKISGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P+I ++    +   +   DSG +D + KP    E+LAR+  I+R   
Sbjct: 62  EVLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFREKT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N+        +  D     V+G+   L ++E  +L YL+ NR   +++  I   ++G 
Sbjct: 122 TNNSLHWGEL-TMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   + N+V+  I  +R+KL + +    + + R +GY I  N
Sbjct: 180 YEYYGDTNIVDVFIKNIRRKLEDVMDVRMIQTIRGIGYVIKDN 222


>gi|311278928|ref|YP_003941159.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308748123|gb|ADO47875.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +        +   +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLLAANYAPTLISHGDKVLPYVHQSPPALILLDLML--PGTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R IR  S VP++ ++        L   + G DD + KP   RE    +  +    R 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +         P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 HRELQAMDAESPLIVDESRFQASWRNKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +          +G  +   N  +    L   +  D+  ++           
Sbjct: 5   IFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVM--MPQMDGW 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++    +Q  +   D G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKP 122

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + +  D R+    G    L  +E  +L   M N  + + +  I   I
Sbjct: 123 DRQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E NV+E +I+ LR+K  +      + + R  GY +
Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEDGTAKRLIQTVRGTGYVL 224


>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE   +      V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL  K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGEK--AKHIGTVIRVGYKFEE 225


>gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11]
 gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +++       +    +   NS E      +    D+  ++  L+G  G +  
Sbjct: 6   LVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLLGKSGIEFA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +P+I ++        +   ++G DD + KP   RE++AR+ A+ RR   
Sbjct: 66  RSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVLRRSLP 125

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +                RV    ++   + +   +   E R+L +LMA+  +   + Q
Sbjct: 126 EASDEILNAEGVRLNPMTHRVTVINQEDGFREKELLVSPTEFRLLHFLMAHAERVHTRAQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VE+  V+ HI +LRK L      D + + R  GY  
Sbjct: 186 LLDRVWGDH-VFVEDRTVDVHIRRLRKVLEVAGKADLIQTVRGAGYRF 232


>gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 234


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +++            +           +  +    +  ++  L   G K  E
Sbjct: 6   LIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILL--PGMKGYE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           + + IR  S+ P+I +S    ++  +   D+G DD + KP    E+        R + + 
Sbjct: 64  ICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMN 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D  D   +G    L  +E ++L  L+ N+    +  +I+  
Sbjct: 124 ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G+ D   +   V  HIS LR+K+         + + R  GY  
Sbjct: 184 IWGI-DHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227


>gi|302545825|ref|ZP_07298167.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463443|gb|EFL26536.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 245

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +         G  +    +           R D+  ++  L        
Sbjct: 19  ILVVDDESRIAELLSTTLELAGYQVGTAATGGEALDRVGRERPDLVILDVML--PDLDGF 76

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + R + A      P++ ++   SL + +     G  D V KP    E+LARV  + R  
Sbjct: 77  TVCRRLVAADEDHPPVLFLTARDSLDSLVTGLGIGGGDYVTKPFRIAEVLARVQVLLRGR 136

Query: 120 KVSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      E             R          L   E R+L YL+ N G+ V+K QI   
Sbjct: 137 RRGVRAEEPPRYADLVLDDTTRQARRGRRALDLTPAEYRLLRYLLVNAGRVVSKEQIGEH 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++     A  +N +E  IS+LR K+        + ++R  GY
Sbjct: 197 LWFKDHRAYGDNAIEKLISRLRHKVDEA-EPALIHTRRGFGY 237


>gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +          + +  ++ I+           
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A + R  
Sbjct: 62  ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D    +  V+ HI +LR     +     + + R +GY 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYK 220


>gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + D        +G  +   +  +       +   D+  ++  L       LE
Sbjct: 7   LLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLML--PVIDGLE 64

Query: 63  LPRIIRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           + R +R+  ++P      ++        +  F+ G DD V KP   + ++ R+       
Sbjct: 65  VCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRRS 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  + S +   T  I +        + GE   L   E R+L  L  + G+   + ++   
Sbjct: 125 QAGEQSRDVIVTRGIEIDRINHTARLNGEELHLTPTEFRLLWTLARSPGRPFGRNELMDR 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G  D    E  ++ H+  LR+KL      D V++ R +GY  
Sbjct: 185 CRGE-DANALERTIDVHVRSLRQKLGAL--ADIVETVRGVGYRF 225


>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S++   +        + A  D+  ++   +      L
Sbjct: 3   ILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDI--LMPEMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R  +  VP++ ++     +  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +        +               G+   L  +E  +LEYL+ N+G  +++ +I    
Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F      N+V+ +I  LRKK+ +      + + R  GY +
Sbjct: 181 WD-FSYEGASNMVDVYIKTLRKKIDHDFEPKLLHTVRGAGYVL 222


>gi|225414555|ref|ZP_03761744.1| hypothetical protein CLOSTASPAR_05778 [Clostridium asparagiforme
           DSM 15981]
 gi|225041911|gb|EEG52157.1| hypothetical protein CLOSTASPAR_05778 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G   E F + E            ++  +  L   G   +
Sbjct: 4   IYIIEDDENIRNLLQIALEGFGYQAESFETAEEGLARMKEEPPSLAIFDWML--PGMDGI 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + +R       +P++ ++        +   D G DD + KP    E+ ARV ++ RR
Sbjct: 62  QAIKEVRRTEGLKDLPVMVLTAREKELDKVVGLDCGADDYMVKPFGVLELSARVRSLLRR 121

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  +   E     IRV    R+    G    L  +E  +L YL+ N  + V + ++ + 
Sbjct: 122 SRREDRSDELAFDGIRVNRRTREVNSGGRPVELTLKEYELLMYLLENCSRVVTRDELLNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +    E   ++ HI  LR+KL    G   + + R +GY +
Sbjct: 182 IWG-YGYDGETRTLDMHIRTLRQKLGADGGA-CIRTVRGVGYRM 223


>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    S             D+  ++  L       L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N          + V+ D R   +      L   E  IL  LM+   K  +++ +   +
Sbjct: 121 LSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTTTEFDILHALMSTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +      + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|146309134|ref|YP_001189599.1| DNA-binding response regulator CreB [Pseudomonas mendocina ymp]
 gi|145577335|gb|ABP86867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G      +       L  +   D++ ++  L        
Sbjct: 4   ILIVEDEAAIADTLVYALQAEGFVTRWSSLGGEALTLLENGAFDLAILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD V KP   RE+ ARV  I +R+  
Sbjct: 62  EVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKVILKRMAP 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       ++          G+   L R E R+L  L+    +  ++ Q+  A+ G
Sbjct: 122 RETPAAGAASAFQIDDAAFCIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL-G 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           +  E   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 181 VASEVGYERNIDSHIKSLRAKLRAIAPAEEPIQTHRGLGY 220


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++           
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       
Sbjct: 64  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 KNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 221


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++            +   +         +    D+  ++           
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 71  EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNN 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G
Sbjct: 131 QSTDNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 191 -YEYAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 228


>gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 237

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 11  ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLML--PGRDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + IR  S VP+I ++        +    +G DD V KP    E++AR+         
Sbjct: 69  QICQDIRRESGVPIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAA 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  L  +  +  ++  +   ++
Sbjct: 129 QREEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  + A +  +V  H+ +LR K+  N      + + R +GY I
Sbjct: 189 GYTNSA-DTRLVNVHVQRLRSKVERNADHPQMIITVRGIGYRI 230


>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
 gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +  F+  +         + ++  ++  +       L 
Sbjct: 5   MLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMV--PRMDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+  
Sbjct: 63  ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I     
Sbjct: 123 AEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 182 FDVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFEY 225


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+++     F  +   +    +      L      D+  ++           
Sbjct: 5   ILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIM--MPEMDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I I+     +  L  F+ G D+ V KP+  R ++AR  A+ +R + 
Sbjct: 63  SVCRRIREKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKRTER 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R     + G + V  +     V GE+  L  +E  +L +L+ + GK +++  I +A+
Sbjct: 123 TVGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYILNAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +   V++HI KLR KL +      + +    GY  +
Sbjct: 183 WG-YEYLGDLRTVDTHIKKLRAKLGDAG--KLIATVIRSGYRFE 223


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   +
Sbjct: 4   ILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLML--PGLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEQ 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|330810541|ref|YP_004355003.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378649|gb|AEA69999.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G + +  ++         ++   +  ++  L   G   L
Sbjct: 7   ILIVEDEPKLAALMRDYLIAAGYATQCLDNGLQVVPAVRASEPRLILLDLML--PGRDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 65  QVCQELRSFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRSPQ 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               A      +  D     + G    L   E R+L  L  + G+  ++ Q+   IY   
Sbjct: 125 LLVTAPARL-LIDEDRYQASLDGVALDLTPLELRLLRTLAQSPGRVFSRDQLLDRIYSDH 183

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              V +  V+SHI  LR+KL       +P++S   +GY  
Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPAENPIESLYGVGYRF 222


>gi|290958392|ref|YP_003489574.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647918|emb|CBG71023.1| two-component system response regulator [Streptomyces scabiei
           87.22]
          Length = 235

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAETGPI---------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                        + ++G +    G    L   E R+L    +  G  
Sbjct: 126 SGGDTRAEEAGAASTGGVLTFGELVIDTEGMEVLKSGVPVALTPTEMRLLLEFSSAPGTV 185

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 LSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 233


>gi|254292563|ref|YP_003058586.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041094|gb|ACT57889.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   + +   A F  +G ++  ++  E      +    +++ ++          +
Sbjct: 4   IALVDDDENIVESLKAFFEAEGYTVRAYHDGEAALQGLAEHPPELAILDV--KMPKMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P I ++        +  F+ G DD + KP   R +  RV A+ RR + 
Sbjct: 62  ELLRRLRQTSNLPAIFLTSKDDEIDEVVGFNIGADDFIRKPCSMRLLSERVKAVLRRSRG 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    E     +         +      +GEV  L   E  IL+ L    G   ++ Q+ 
Sbjct: 122 AGVSEEGDKKPIVRGSLTLDPNRHACTWKGEVVRLTVTEFLILQALSTRPGYVKSRDQLM 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            A Y      V++  ++SHI +LRKK R+    FD +++   +GY 
Sbjct: 182 DAAYD-DQVYVDDRTIDSHIKRLRKKFRDQDDEFDSIETLYGVGYR 226


>gi|257791382|ref|YP_003181988.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257475279|gb|ACV55599.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   + D    L  + G     F +       Q+    D+  ++      G    
Sbjct: 7   IAVCDDEQAIADLVGQLLVEAGFVPTVFYAAPDLLACQADDPFDLVILDIM--MPGMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +R  S VP+I ++        +  F+ G DD V KP   RE++ARV A  RR   
Sbjct: 65  ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATS 124

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           E   I +        + GE   L  +E  IL  LM ++ + VA   +F
Sbjct: 125 NDVAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQSRPVASRDLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G    A   N V  HI  LRKKL       + V++   +GY +
Sbjct: 185 ETVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231


>gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +           D++ +   ++      +
Sbjct: 21  ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 80  DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 139

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E   + V       +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 140 EVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 199

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 200 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D        +G +++  +      W+ S    DV  ++  L         
Sbjct: 4   LLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVML--PRMNGYT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+  A +  P++ ++    +    +  D+G DD ++KP  +  +LAR+ A+ RR   
Sbjct: 62  VCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGGR 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   + T     V   G           L  +E  +L  L    G+ V+K+++ +  +  
Sbjct: 122 ARPVSITVGDLTVDPAGLRCRRGEVEIALTPKEFAVLHGLARRPGEVVSKSELLAQAWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F    + N+VE +IS LR+K+ +  G   + + R  GY ++
Sbjct: 181 FSYDGDPNIVEVYISALRRKIDSPFGRSSLVTVRGAGYRLE 221


>gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
 gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVIEAATGGEGLTQAALNKPDLVVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ R+   
Sbjct: 65  QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQAPQ 124

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   T            R   ++G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 VGSATSTASFGPLVVDFAFRKVTLEGVEVSLTRKEYALLAQLAGHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHVD-DTHYLRIVVGHLRQKLGDDPTAPRFIVTEAGVGYRL 226


>gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 219

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG          +++   S E         +  +  ++  L       L
Sbjct: 3   ILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGL--PDIDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R     +P++ +S    +Q  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +       IR+           E   L RRE  +L  L ++RG+ ++K Q+   +YG
Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D  V  N +E HI  LRKKL      D + + R +GY I+ 
Sbjct: 181 WSD-DVSSNTMEVHIHNLRKKL----NPDLIKTVRGMGYMIEK 218


>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++D                      +   +    D+  ++  L G  G  +
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R  +   ++P+I ++        +   ++GVDD V KP   RE+    R      R
Sbjct: 65  ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +R+              P+   E R+L + M +  +   +TQ+   ++
Sbjct: 125 EDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 262

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D             ++G + +     E    L +    DV  ++  L       L 
Sbjct: 40  LVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPL--LDGLS 97

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           + + +RA     P++ +S    +   +    +G DD + KP  + E+             
Sbjct: 98  VIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAP 157

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R   G + +          GE   L  RE R+LEYLM + G+ V +T +   ++ 
Sbjct: 158 EEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWD 217

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ H+S+LR K+        + + R  GY+I
Sbjct: 218 -YHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257


>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL YLM N+G  +++ Q+ +
Sbjct: 123 STINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYLMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGEK--ATCIVTVVRTGYKFE 225


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R ++      ++ ++   S+   +   D G DD + KP        R          
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N+     + +    R      +   L +RE  +L  LM+N  + + + ++ S 
Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
          Length = 247

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++      G     
Sbjct: 24  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 81

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           + R +RA     P + ++   SLQ  +     G DD V KP        R  +    A  
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++  LR+K+ +      + + R +GY +
Sbjct: 202 VW-RYDFGGDVNVVESYVLYLRRKI-DTGEKRLLHTLRGVGYVL 243


>gi|148654299|ref|YP_001274504.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566409|gb|ABQ88554.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A    DG  +      E         R D+      L+  G   L
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFVVHTARDGESALQQAQIVRPDLVV--LDLLLPGIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EICRRLQHDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +              +++    R+ + +G    L  RE  +L  L A  G+   + Q+  
Sbjct: 123 TGAAPAENTLLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  D    + VV+ HIS LR+KL +       + + R +GY  
Sbjct: 183 RVWG-HDFDGVDRVVDVHISLLRRKLEDDPAEPTLIQTVRGVGYKF 227


>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
 gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G      +         +  R DV  ++  L   G   LE
Sbjct: 17  LIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGL--PGLDGLE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA +   ++ ++   S +  +   + G DD + KP + RE++ R+ ++ RR +  
Sbjct: 75  VCKRIRAFTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPRKI 134

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +       G I + +   +  V+G    L R E  +L+ LM   G+ V++  + S 
Sbjct: 135 DETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLVSQ 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 195 VWDTT-WVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGYRM 238


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R ++      ++ ++   S+   +   D G DD + KP        R          
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N+     + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|228997776|ref|ZP_04157380.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229005316|ref|ZP_04163031.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228755955|gb|EEM05285.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228761908|gb|EEM10850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 215

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 94/219 (42%), Gaps = 11/219 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALEIFYEVKIDLAILDWM--MPKRNGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   +L R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSENEDELAALQSGADEYVKKPFHPGILLTRA----KKLLNQ 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DEVIQVQNLKIDLIKNKVYKSDKELEITKTELELIKCFLNHKGTILTREKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +E  V++H+ +LRKK+      D + + R LGYS++
Sbjct: 177 YFGDERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLE 211


>gi|170758675|ref|YP_001786359.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405664|gb|ACA54075.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IRA S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N    GP  +     + + +G +  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVENANEEKNILSFGPFELNISKGEFKKEGSLIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
 gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans]
 gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E                 D+  ++  L        
Sbjct: 5   ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLML--PEMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+ R ++      +I I+   S+   +   D G D  + KP    E+      + R   I
Sbjct: 63  EVIRRLQLEKTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    S N      +++    R     GE  PL +RE  +L  L+ N  + + + ++ +
Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D+  E NVV+ +I  LR K+        + + R +GY I  N
Sbjct: 183 RVW-KYDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYIIREN 229


>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
 gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 235

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +++G + +   +G       +      L    + D   ++           
Sbjct: 3   ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIM--MPELDSY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR H    P+I +S        +   + G DD ++KP    E+ AR+  I RR  
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + VF +            L  RE  IL YL  ++G+ V +  +F
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            A++G +D   +   ++ HISKLRK +  + +    + +    GY 
Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225


>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +          +   D+  I   ++       
Sbjct: 3   ILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTN-PDIGLIILDIMMPDMNGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ +S        +    +G DD V KP +  E++ARV A+ RR + 
Sbjct: 62  EVLKEVRKDNPVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRAQN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
              +A    + +     + +             L   E  IL  L ++  +  +   IF 
Sbjct: 122 GMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            ++   +  V    V  H+S LR KL     G   V +   +GY I+ 
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGYKIEV 228


>gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +    +  ++G              +    + D+  ++  L   G    
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPIVKPDLILLDVML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K 
Sbjct: 62  GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKP 121

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          + N  E G I +          G+   L   E  +L  L A  G+
Sbjct: 122 AAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++++ +   ++G ++ + +  +V  H+ +LR K+ +       V + R +GY  
Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|257464207|ref|ZP_05628587.1| DNA-binding response regulator [Fusobacterium sp. D12]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +++     F  +G  +E  ++             D   ++  L    G ++ 
Sbjct: 4   LIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQLT 63

Query: 62  ELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           ++ R +      P  I ++     +  L+ F  G D+ V KP   RE +      +  ++
Sbjct: 64  KIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQNKI 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S N      + +         +G    L ++E  +L  L+ N+G  + + +I   ++G
Sbjct: 124 PHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                + +  V+ +ISKLR+KL        + + + +GY ++ 
Sbjct: 184 ST-YYIGDRTVDVYISKLREKL--PGISTSIKTVKGVGYKLEE 223


>gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +    ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTPPELVLLDIML--PGTDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R ++A      +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S   +    I                V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+  +I+G +    E   V+ HI  LRKKL        V + R +GY 
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYVKTVRGVGYK 223


>gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 260

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  L+   G+ V+   I
Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVSPALI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLE 232


>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  + E     E       + + D+  ++  L       L
Sbjct: 3   ILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLML--PKLDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  SQVP+I  +        L   + G DD + KP   RE+         R   
Sbjct: 61  SVCREVRKQSQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREV-VARVKAVLRRSQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + + A+   + +  +      QG+   L   E RILE L A++ K V++  +    Y   
Sbjct: 120 APSGADNSILHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAY-TD 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V +  ++SHI+KLRKKL+     + + S   +GY +
Sbjct: 179 HRVVSDRTMDSHITKLRKKLQQIHPQEIIHSVYGVGYRL 217


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G         +      ++   D++ +   L+      +
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTN-PDINLVILDLMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ + IR  S +P++ +S   +    +    SG DD V KP +  E++A      R    
Sbjct: 62  EVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       I          ++G+V  L   E  IL  L ++  +  +   IF 
Sbjct: 122 EVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V+ G        G S+  + S E       S R ++  ++  L   G   +
Sbjct: 4   ILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHIRSRRPEIVILDVML--PGIDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR   Q+P+I ++        +   ++G DD V KP+  R + AR+ A+  R   
Sbjct: 62  EVCRRIRKMDQLPVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVLRRVES 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+++R   G + V        + G    L   E R+L  L+ + G+ + +  +  A++  
Sbjct: 122 VASDRITFGDLVVDRGALKVSLAGREIHLTPTELRLLLELVRHPGQVLNRRYLLRAVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                +  +V++ + ++R K+ +     D + + R  GY  
Sbjct: 181 HTHVADSRLVDACVQRVRAKIESVPAEPDFIHTVRGFGYRF 221


>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +                  DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A    IR     +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|239626588|ref|ZP_04669619.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516734|gb|EEQ56600.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 237

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G   EGF + E         + D++  +  L   G   +
Sbjct: 13  IYIIEDDENIRNLLKIALEGFGYGSEGFETAEEGLKRMKEEQPDMAIFDWML--PGMDGI 70

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
              + +R       +P++ ++        +   D G DD + KP    E+ AR+ +    
Sbjct: 71  TAIKQVRQTDGLKDIPIMLLTAKEKELDKVIGLDCGADDYMVKPFGVLELSARIRSLLRR 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R + S +      I V    R+    G    L  +E  +L YL+ N+ + V + ++ + 
Sbjct: 131 TRREESRDVLSYQGISVNRKTREVISSGHPCELTLKEFELLVYLLENQSRVVTRDELLNR 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+G ++   E   ++ HI  LR+KL ++ G   + + R +GY 
Sbjct: 191 IWG-YEYDGETRTLDMHIRTLRQKLGDEGGS-CIKTVRGVGYR 231


>gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 4   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I  R   
Sbjct: 62  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 122 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 182 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + D  +     +G+ +E             S R D+  ++  L        E
Sbjct: 7   LVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGL--PDISGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------- 115
           + R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I       
Sbjct: 65  VCRSMRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRAKGA 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S    E       +DG     +G    L R E R+L  L+ + G+  A++Q+  
Sbjct: 125 SDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFARSQLMD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++    + V+   V++H+  LR KLR      DP+ + R +GYS++
Sbjct: 185 LVWHDSLDTVD-RTVDTHVKTLRAKLREIAPAGDPIRTHRGMGYSLE 230


>gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591]
 gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591]
          Length = 260

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|326388569|ref|ZP_08210162.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206820|gb|EGD57644.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 260

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +++         G  +    S        +SA  D+  ++      GE  L
Sbjct: 26  ILLVDDEAALREPLADYLARQGFVVTQAASAAEARGRIASAHYDLVLLDIM--MPGEDGL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +    ++P+I I+        +   + G DD V KP   RE++AR+ ++ RR   
Sbjct: 84  SLCRHLAETRRMPVIFITAKGESTDRIVGLEIGGDDYVVKPFDPRELVARIRSVLRRSGR 143

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A    +  F   R   ++         V P+   E R+L   + +  + + + ++ 
Sbjct: 144 VIPEAVEATLYEFESWRLDPLKRRLTDPEGVVVPISSAEFRLLMAFLDHPRQVLDRDRLL 203

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + G      +   V++ IS+LR+K+  +      + +    GY +
Sbjct: 204 DMVQGREAHLFD-RAVDNQISRLRRKIEIDSRNPQLIQTVWGGGYML 249


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           ++++D   + +         G+ +    ++   +    +A+ D+  ++  L    G   L
Sbjct: 7   LIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDCAGLDWL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
              R   ++  +P+I ++        +   ++G DD V KP   RE+    R     +  
Sbjct: 67  RELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRRKGG 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ + ++  +  V G+   L   E + L+    + G+  ++ Q+   ++G
Sbjct: 127 DALPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDKVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +    ++E  V+ H+ +LRK+L      D +++ R +GY 
Sbjct: 187 VG-ADIDERTVDVHMLRLRKQLAGTAAADFIETVRGVGYR 225


>gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD   + +        +G  ++   + E    +  S + D+  ++  L G  G +V 
Sbjct: 7   LVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGIDGFEVA 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
              +     S +P++ ++        L   + G DD V KP   R     I A +     
Sbjct: 67  RFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILRRDML 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  +   + V    R+  V  +   L   E  IL  L+   G    +TQ+   +
Sbjct: 127 AFPEESSAVKIHNLVVHPGRREVLVDDKPVRLTFTEFGILNALVRRPGWVFTRTQLVDEV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G  +  V +  V+  I  LR+KL        V++ R +GY I
Sbjct: 187 RG-SEHLVTDRSVDVQIVGLRRKLGPAGA--YVETVRGVGYRI 226


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L     +A       ++E  +  +    L  +   D+  ++  L       +
Sbjct: 3   ILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTL--PKLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R+    +P++ ++   +        D+G DD V KP    E+ AR+ A+ RR +
Sbjct: 61  TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++                +   + +   L  +E  +LE  + N  +  +   I   ++ 
Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+E   +  V +HI  LR+KL+      D +++   +GY +
Sbjct: 181 -FEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRL 221



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +     +L    G+ +           L  +   D+  ++  +    G ++ 
Sbjct: 515 MVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTELC 574

Query: 62  ELPRIIRAHSQVPLIGISDY 81
           ++ R   + S +P++ ++ +
Sbjct: 575 QIVRNDSSWSSLPILFLTAH 594



 Score = 36.6 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI 49
           + +++D    +    IA     G  LE   +L            D+  +
Sbjct: 388 LLLIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLL 436


>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 244

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +      E  + L    + DV+ ++  L   G   LE
Sbjct: 19  LIVDDDPAILEILRVYLRQDGFRVLEAR--EGAQALSLLPQADVAVLDWML--PGMTGLE 74

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R   A   +VPL+ ++     +  L   + G DD V KP   RE++AR+  + RR+ V
Sbjct: 75  LARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMGV 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +    R   ++GE   L + E  +L  L    G    + ++   ++G+ 
Sbjct: 135 REVIEHGEL-HLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGV- 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           D    E VV+ HI+ LR+KL +       +++ R +GY    N
Sbjct: 193 DYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFREN 235


>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 81/225 (36%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     L   +          E           D+  ++  L    +   
Sbjct: 4   ILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNL--PKQDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + I+    VP+I ++        +  F  GVDD + KP         +  V   YR+
Sbjct: 62  SVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + V    R+    GE   L  +E  +LE L  N  +   K QI   ++
Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
                  + N+V   + +LR+K+  +      + +   +GY  + 
Sbjct: 182 -PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAEK 225


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 95/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  + + D+  ++  L        +
Sbjct: 5   LVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLML--PQMSGEQ 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +    +  P+I ++   +    +   + G DD + KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S             N   TGP  +           +   L  +E  ++EYL+++  + ++
Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G FD + +  +V+  I+ LR+K+  +      + + R  GY  
Sbjct: 183 RDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGYEF 233


>gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 221

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G S +  +  +  E L  + +  +  ++  L        
Sbjct: 4   ILLVEDDFAIVHSLQEYLNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLK--DGDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +    Q+P+I +S     +T +   + G DD + KP   +E+L+R+  + RR   
Sbjct: 62  AVC-NMAQKIQLPVIFLSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I+V  +    + + +   L   E ++L   + +RGK + + Q+   I+ + 
Sbjct: 121 HQTIILLDEIQVDIEKAIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNIA 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            + V +N +  +I +LR+K+ +       + + R LGY +D
Sbjct: 181 GDFVNDNTITVYIKRLREKIEDDPTNPKIIKTVRGLGYRMD 221


>gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +   +              S   D+  ++  L   G   +
Sbjct: 4   ILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLML--PGINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR   Q P+I ++    +   +   DSG DD + KP    E+    R        
Sbjct: 62  EVCRRIRKTKQTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLRRSGF 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + +     + + S+ R      ++  L +RE  +L  LM N G+ + + ++   I+G
Sbjct: 122 VEDSKQITYNGLVLDSEARILTKDQQIIELTKREFDLLSILMHNIGRVMTRERLLELIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  VE NVV+ +I  LR K+        + + R LGY I
Sbjct: 182 -YDSEVETNVVDVYIRYLRSKIDEPGEASFIQTLRGLGYVI 221


>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++D                      +   +    D+  ++  L G  G  +
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLPGTSGLDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R  +   ++P+I ++        +   ++GVDD V KP   RE+    R      R
Sbjct: 65  ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +R+              P+   E R+L + M +  +   +TQ+   ++
Sbjct: 125 EDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|291522141|emb|CBK80434.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +      L    + D+      ++      +
Sbjct: 7   ILVVDDDKEIANLVEIYLSSTGYKIHKAYNAVDGLALLQ--KYDIKLAIIDVMMPQIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   +    +     G DD + KP +  E+LARV +  RR   
Sbjct: 65  EMCRRIRTCRNIPIIILSAKSADVDKILGLSVGADDYMIKPFNPMELLARVKSQLRRYLE 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +N  E   + + +      V G    L   E  IL+ L ++ G+  +  +I+
Sbjct: 125 LNPGVVPDSNMIEVQDVVIDTKKHRVTVDGRDVVLTPIEFNILQLLASHPGRVFSTDEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+ +LR+K+         + +   +GY I+
Sbjct: 185 ENVWNEKLYEAN-NTVMVHMRRLREKVEKNPRSPQLIKTVWGVGYKIE 231


>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 241

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 21  LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGL--PGMDGLE 78

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 79  VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
              +     ++ HIS LRKKL +       + + R +G+  + N
Sbjct: 199 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241


>gi|302553204|ref|ZP_07305546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470822|gb|EFL33915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFVVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAETGPIRV-------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  P                 ++G +    G    L   E R+L    +  G  ++
Sbjct: 126 GGGRAEEPASPADGGVLTFGDLEVDTEGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR+K+    G D +++ R  GY +
Sbjct: 186 RDKLLERVWD-YGWGGDTRVVDVHVQRLRQKI----GQDRIETVRGFGYKL 231


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       +G  ++     E       +   D+  ++  L       L
Sbjct: 4   ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLML--PKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R+ S +P+I ++        +   + G DD + KP + RE++AR+ A++RR   
Sbjct: 62  TLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTT 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +              P+   +       L  +E  +L  L +N GK  +K ++   I
Sbjct: 122 PYVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G FD   + N V  HI KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYM 224


>gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++    +          +G  ++             +    +  ++  +   G   +
Sbjct: 6   ILLVEYEEQMSMFIEMELTHEGYKVDIVYDGREALEKVENTEYQLILLDIMI--PGLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  S VP+I ++    +   +   D G +D + KP    E+    RV    + +
Sbjct: 64  EVCRRIRQFSCVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKLV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +  +   I + +        G    L ++E  +LE L+ N+   + + ++   ++G
Sbjct: 124 KSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+  I  LR K+ N      + + R +GY I
Sbjct: 184 -YDYVGDTNVVDVFIRYLRSKIDNDSKEKLITTIRGVGYVI 223


>gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     +       + G +++  +  +    L ++   ++  ++  L   G     
Sbjct: 4   LIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIML--PGRDGWS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  +  P++ ++   ++   +   + G DD + KP    E LARV ++ RR   
Sbjct: 62  VLAALRAAGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGTD 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       V +        G    L  +E  ++  +    G  +++T I   ++ +
Sbjct: 122 RRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   E NVV+ H+ +LR KL +      + + R +GY ++ 
Sbjct: 182 -NFDSESNVVDVHVRRLRAKLDDPYPTKLIHTVRGVGYVLEE 222


>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
 gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 5/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD A +++         G       +      L    + D+  ++  + G  G +  
Sbjct: 8   LIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASGIEFA 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R     + +P+I ++        +   ++GVDD + KP   RE++AR+ A+ RR   
Sbjct: 68  RRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLRRTTP 127

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +               L   E R+L++ M ++ +  +++Q+   ++G
Sbjct: 128 KGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYSRSQLLDMVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +  VEE  V+ HI +LRK L ++  +  V + R  GY    N
Sbjct: 188 -GNVYVEERTVDVHIRRLRKALGDRHDY-LVQTVRGTGYRFSSN 229


>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
          Length = 248

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +    +  ++G              +    + D+  ++  L   G    
Sbjct: 12  IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K 
Sbjct: 70  EVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKP 129

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          + N  E GPI +          G+   L   E  +L  L A  G+
Sbjct: 130 AAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 189

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++++ +   ++G ++ + +  +V  H+ +LR K+ +       V + R +GY  
Sbjct: 190 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 243


>gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
 gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A          G+ G +++  ++     +L S        ++  +    G  +
Sbjct: 5   ILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPAMDGMAM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R   A  + P+I +S   + +  ++   SG DD + KP    E++ARV  + RR  
Sbjct: 65  LKALRA--AEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGG 122

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +    R  +       L  RE R+LEY + +  + V +T +   +
Sbjct: 123 GGGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NV++ H+S+LR+KL +      + + R +GY +
Sbjct: 183 WD-YHFDPGTNVIDVHVSRLRRKLDDGGDRPLLHTVRGMGYRL 224


>gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++G           ++   + E       + R D+  ++  L   G   LE
Sbjct: 5   LLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLML--PGMTGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R IRA  Q  P+I  +        +   ++G DD V KP+  R + AR+ A+ RR   
Sbjct: 63  VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +        G + V   G    + GE   L   E R+L  L A+ G+  ++ Q+ 
Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            A++   D   +  +V++ + +LR K+         + + R  GY  
Sbjct: 183 EAVW-EHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGYRF 228


>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
 gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
          Length = 243

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 PQEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237


>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  TVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ +
Sbjct: 123 SAVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 249

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   +  G +G  +    + E    +          ++  L   G   LE
Sbjct: 16  LLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINL--PGIDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A S+ P+I ++        +   + G DD + KP   RE+LAR+ AI RR +  
Sbjct: 74  VCRRMKARSETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                T        +       +V G    L   + ++L  L    G+ +++  +  A+ 
Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G   EA +   ++ HIS++R ++ +       + + R  GY  
Sbjct: 194 GETLEAFD-RSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVML--PDVSGTE 62

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           + R I++      VP++ ++        +  F+ G DD V KP   RE++ R+       
Sbjct: 63  VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       GPIRV  D     V G    L   E ++L  LM+  G+  ++ Q+   
Sbjct: 123 AARPSDRPPESVGPIRVDVDAHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLED 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++      VE   V++H+ +LR+KL    G D +++ R +GY +
Sbjct: 183 VW-EMSSEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 223


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F  +   +    + +       S + D+  ++           E
Sbjct: 6   LLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIM--MPELDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++        +  F+ G DD V KP   + ++AR  A+ +R++  
Sbjct: 64  VCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGH 123

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                           +     EV      L  +E  +L  L+ N+G  +++  I + ++
Sbjct: 124 VQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +  VV++HI KLR KL        + +    GY  + 
Sbjct: 184 GI-DFEGDTRVVDTHIKKLRSKLGR--ESRHIRTVFGTGYRFEE 224


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +    +      D+  ++  L       +
Sbjct: 5   ILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVML--PKMSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E    +  +    ++
Sbjct: 63  EVCKRIREGSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   +++     +      +  L +RE  +L++L+ N+G  +++ +I   ++
Sbjct: 123 TVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD    +N+++ +I  LR K+        + + R +G+  
Sbjct: 183 G-FDYIGNDNILDLYIKYLRDKVDKPYERKFIQTVRGIGFIF 223


>gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis
           z3032]
 gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter
           turicensis z3032]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 11  ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 69  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 189 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 231


>gi|218235082|ref|YP_002367585.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229046562|ref|ZP_04192213.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|296503400|ref|YP_003665100.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218163039|gb|ACK63031.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228724737|gb|EEL76043.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|296324452|gb|ADH07380.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 215

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      S+   +++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTN-PEIALMILDIMMPQMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S++P++ +S   S    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +V  L   E  IL  L ++  +  +  +IF 
Sbjct: 122 EVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           +  +IIR  S VP++ IS              G DD + KP    E+       + R   
Sbjct: 62  DFLKIIREKSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    +N  K   K QI+
Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++       ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|255525555|ref|ZP_05392490.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510739|gb|EET87044.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G+ +    +LE    + ++   D+  ++  L        
Sbjct: 4   ILLVEDDESLNRGISFKLNKEGMKVFAAKNLEEGREIFNNTSLDLIILDIGL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  S V +I ++        +   D G DD + KP     +++++ A+ RR   
Sbjct: 62  EFCSEIRKQSGVLIIFLTACDEEVDIVTGLDMGADDYITKPFSFMVLMSKINALLRRNSS 121

Query: 122 SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           SN+         F           +   L + E R+L+YLM N G+ + K Q+ + ++ L
Sbjct: 122 SNSSKIVSGSIAFYPEEMKVLKDEKQIDLSKTELRLLKYLMLNSGQIIKKEQLLNELWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             + V+ N +  +I +LR+K+  N      + + R +GY
Sbjct: 182 DGDFVDSNTIAVNIRRLREKIEVNPSKPKYIKTVRGIGY 220


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +           L ++   DV  ++  L   G   +
Sbjct: 27  ILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVML--PGINGI 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  SQVP+I I+   ++   +   D+G DD + KP         I   +     
Sbjct: 85  EICRRIRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   ++       I +     +  VQG    L + E  +L+ L+ ++ +   +  I +++
Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  +E NVV+ +I  LR KL        +++ R +GY +
Sbjct: 205 WG-YDTDIETNVVDVYIRHLRSKLPGDTNA-YIETVRGVGYVM 245


>gi|160880958|ref|YP_001559926.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429624|gb|ABX43187.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +  +++D   +++       + G  +E F + E           ++  ++  L    G  
Sbjct: 8   LIYIVEDDRNIREIEGYALRNSGFEVEVFETGEELYRALEKEIPELILLDVMLPNEDGLS 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           +L   R       +P++ ++   +    +   D G DD + KP    E+++RV       
Sbjct: 68  ILSNVRKDSKTENIPIMMVTAKTTEMDKVKGLDLGADDYITKPFGIMELVSRVKALLRRA 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + +  +     V GE   L  +E  +L YL+ N+G  +++ +I   
Sbjct: 128 GGNGQNVGALSFHDVSLHVEKHSVTVDGESCELTYKEFELLRYLLENQGIVLSRDRIMER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ HI  LR KL    G D + + R +GY I
Sbjct: 188 VWG-FDYEGESRTVDMHIKTLRHKLGA--GGDIIKTVRNVGYKI 228


>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +     +                      D+  ++  L       L
Sbjct: 7   ILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRHAIDLVVLDLML--PDTDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  SLCRELRAKSNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRTRA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---------FPLPRRERRILEYLMANRGKRVAKTQ 172
                     R            E           PL   E R+L  L+ +  + + + Q
Sbjct: 125 LPPNMRPESARCLCFAGWCLDTAERLLTAPDGVATPLSGGEYRLLHILLDHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   I+G   EA +   ++  +S+LR++LR+       + + R  GY +
Sbjct: 185 LTEMIHGREAEAYD-RAIDVQVSRLRQRLRDDSREPTLIKTVRGEGYVL 232


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R ++      ++ ++   S+   +   D G DD + KP        R          
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N+     + +    R      E   L +RE  +L  LM N  + + + ++ S+
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 209

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 7/214 (3%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++        + G       + +       +   D   ++            + + IR  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGHSVCKEIRKT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAET 128
           S VP+I ++        ++    G DD + KP    E+             +      + 
Sbjct: 59  SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQF 118

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A    
Sbjct: 119 GPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTR 177

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            V++H+  +R KL        + +   +GY  + 
Sbjct: 178 TVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 209


>gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 225

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D G +++     E  ++L  +   D   ++  L       +
Sbjct: 3   ILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGL--PKVDGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    R  +   P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L Y++ ++G+ + +T++   +Y 
Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKL----GADRIETVRGLGYRL 216


>gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli]
          Length = 239

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152]
 gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152]
          Length = 229

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +    + +            +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R I+    V +  ++      + +  F++G DD + KPI  + +++++       +
Sbjct: 68  CEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIKSLLRRLK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S    + G I +  D       G+   LPR+E  +   L +   K   +  I   +
Sbjct: 128 SEEESEETLKLGDIVIDRDEYVVYKAGKKIALPRKEFELFSLLTSKPSKVFKREVILDTV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V    ++ HI KLR+K+ +    D   + + +GY  
Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 225


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D       D+G  +E                 D   ++  L   G   LE
Sbjct: 18  LIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLML--PGIDGLE 75

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 76  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           + +    R  +V      L  RE  +L +   +  K  ++  + 
Sbjct: 136 IERNARIDAGSLAVHGVSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDLL 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 196 NHVWG-YQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGYKF 241


>gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    D  ++   NS      +       +  ++  L        
Sbjct: 4   ILIIEDEESVANVLKAYLEKDKYNVSVCNSGMEALEVYKEIDFQLVILDLML--PDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ +IIR  S V +  ++   SL   +   D G D+ + KP   RE    +  +      
Sbjct: 62  EICKIIRRTSDVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINT 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++    G +++  + R  E++GE       E  IL  L+ N+GK +++ Q+   ++
Sbjct: 122 SEKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 GI-DFDGYDRTIDVHIKNIRKKIEEDTKNPKYIITVTKVGYKF 223


>gi|197303868|ref|ZP_03168903.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC
           29176]
 gi|197297051|gb|EDY31616.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC
           29176]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I      G+  +GF          +    ++  ++  L G  G  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAKGFADGAAFMEALAFDTPELVLLDIMLPGDDGMV 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           +L+  +       +P+I ++   S    +   DSG DD V KP    E+    +      
Sbjct: 61  LLKKLKSSSKTKDIPVIMVTAKGSEYDKVMGLDSGADDYVTKPFGMMELVSRIKAVLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R     ++ E   I +     +  V G+   L  +E  +LE +M N+G  + + Q+ + I
Sbjct: 121 RKTEEKSQIELSGICMNIKKHEVTVNGKEVALTLKEFELLEKMMLNKGIVLTRDQLLTEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G +D   E   V+ H+  LR+KL  K   D + + R +GY 
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEKG--DLIQTVRGVGYR 219


>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
 gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G +            + + ++ D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWML--PGGSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +R     + +P+I ++        +   D G DD + KP   RE+    +     
Sbjct: 64  ELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +  +  E   +++        +      +   E R+L + M ++ +  ++ Q+   
Sbjct: 124 TSTGIGGSVIEVQGLKLDISSHRVYIDTRPVDMGPTEFRLLSFFMTHQERAYSRGQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L ++ G   + V + R  GY  
Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALESEGGCYNECVQTVRGTGYRF 228


>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +                  D+  ++  L        
Sbjct: 8   ILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIML--PELNGF 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + +R   +  P++ +S        +   + G DD V KP   +E+    +     R 
Sbjct: 66  DVLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRH 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V   G+     G+   L  +E ++L + +A+ G+  ++ ++ S  +
Sbjct: 126 PASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G FD       V++ + +LR K            + R LGY  D
Sbjct: 186 G-FDYEGSARTVDNFVRQLRLKFEPDPEAPRHFLTIRGLGYRFD 228


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G S+   ++ +      ++   D+  ++  L        
Sbjct: 7   LLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLML--PELDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR   ++P++ IS     ++ +  F+ G DD + KP    E+ AR+ +  RR + 
Sbjct: 65  TLLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +    +   + G++  L  +E  +L  L  N  +  +K  + 
Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+   D +   N V  HI  LR KL++       + +    GY  
Sbjct: 185 EMIWKQEDISA-SNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRF 230


>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L  S   D+  ++           
Sbjct: 4   ILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR +   P+I +S        +  F+ G+DD V KP   +E++ RV AI +R   
Sbjct: 62  SACKEIRKYKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGG 121

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +   I    V   GR   + G+   +  +E  +  Y++ NRG  + + ++ + ++
Sbjct: 122 AQENKDVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 G-YDFYGDDRTLDTHIKLLRKSLGDYS--KCIVTLRGVGYRFE 221


>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE   +      V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL  K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGEK--AKHIGTVIRVGYKFEE 225


>gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 245

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       D G +++     +       +   D+  ++  L   G    
Sbjct: 9   ILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIML--PGTDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++        +   + G DD + KP   RE+LARV A++RR++
Sbjct: 67  DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126

Query: 121 VSNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V                      + R   V+GE   L  +E  +L     + G+  ++ +
Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G +  +   + V +HI++LR K+  +      V +   +GY  
Sbjct: 187 LLDEVWG-YQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234


>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
 gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +  PL +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 239

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +   +      +      +  +  +  ++  L       +
Sbjct: 8   ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWML--PVYDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            + R IR  S VP+I ++   S        D G+DD + KP          R +L R+  
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + ++  V +   E GP++V     +     E   L  +E  ++  LM +  +  ++ ++ 
Sbjct: 126 MRQQNDVPDTSLEFGPLKVDLLKHEFYCDNEKIYLTPKEFALITELMRDPEQVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY---SIDWN 223
             ++G +D   + N V+ +I  +R K+ N      + + R LGY    +D N
Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCLRKLDDN 235


>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE   +      V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
 gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
          Length = 281

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 56  LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLT 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 114 ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 173

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 174 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 233

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+ 
Sbjct: 234 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 281


>gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I  R   
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYDPKLIHTVRGMGYVLE 220


>gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     AL   +G S++  ++ E   +L      D++ ++           
Sbjct: 3   ILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIG--MPKLDGF 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R   +A    P++ ++     Q  ++  D+G DD + KP H+ E+LAR  A+ RR  
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N           +   +  + G+   L   E +++EYLM N  K ++KT++   IY 
Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  ++ NV+E  + +LRKKL       P+++ R  GY I+ N
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPAGDLKPIETLRGRGYRINRN 223


>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD A +++                        L    + D+  ++  L G  G ++ 
Sbjct: 7   LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLPGTSGVELA 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +   A + +P+I ++        +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 67  RRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRATP 126

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +        +   G           +   E R+L++ M ++ +   ++Q+   ++G
Sbjct: 127 PGVDSPIEVDGLTLDPIGHRVTTVDGAINMGPTEYRLLQFFMTHQERVYTRSQLLDQVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  VEE  V+ HI +LRK L ++     + + R  GY  
Sbjct: 187 -GNVYVEERTVDVHIRRLRKALGDRYDH-LIQTVRGTGYRF 225


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
           transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++     E       +   D+  ++  L   G    
Sbjct: 3   ILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVML--PGIDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R IR     +P++ ++    +   +   + G DD + KP    E+LARV +      
Sbjct: 61  SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKMDDGFEPKLIRTVRGMGYVLEV 223


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     PL+ ++       T+   D+G DD V KP    E+LARV A+ RR  V
Sbjct: 63  VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 209

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 7/214 (3%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++        + G       + +       +   D   ++          L + + IR  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLSVCKEIRKT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAET 128
           S VP+I ++        ++    G DD + KP    E+             +      + 
Sbjct: 59  SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQF 118

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A    
Sbjct: 119 GPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTR 177

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            V++H+  +R KL        + +   +GY  + 
Sbjct: 178 TVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 209


>gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
 gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D  +      G +++G ++ +   +       D++ ++      G   L
Sbjct: 3   ILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIM--MPGRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  +  P++ ++   ++   +   D+G DD + KP    E+LAR+  + RR  
Sbjct: 61  SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T          R     G+   L  +E  ILEYL+ N+G  +++ Q+ S ++ 
Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ ++  LR+K+ +      + + R +GY+I
Sbjct: 181 -YDFEGGSNIVDVYVRYLRRKIDDPFEKKLIQTVRGVGYTI 220


>gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 234

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G                      +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++          +      D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+  +           + R      E   L  +E  +L   M N  + + +  + + +
Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|289428091|ref|ZP_06429794.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|289158691|gb|EFD06892.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313820661|gb|EFS58375.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823192|gb|EFS60906.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313825530|gb|EFS63244.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|314924865|gb|EFS88696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314978112|gb|EFT22206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314986186|gb|EFT30278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989598|gb|EFT33689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084809|gb|EFT56785.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315088297|gb|EFT60273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327327165|gb|EGE68942.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA3]
 gi|328754980|gb|EGF68596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332675749|gb|AEE72565.1| DNA-binding response regulator MtrA [Propionibacterium acnes 266]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+  N      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
 gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDIMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +    +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  +    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-QQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++   +      +      D+  ++  L   G    
Sbjct: 3   ILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           ++   +R+   +P++ ++    +   +     G DD + KP    E++ R+   + R + 
Sbjct: 61  QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +++         QG    L  +E  +L  L+  +G+ ++++ I S I+ +
Sbjct: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+        + + R +GY  
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMF 219


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +      S+   D+  ++          L
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 80  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 139

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +       + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 140 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 200 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 248


>gi|290475733|ref|YP_003468622.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus bovienii SS-2004]
 gi|289175055|emb|CBJ81858.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus bovienii SS-2004]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I          +     +         + D+  ++  L   G   +
Sbjct: 10  ILIVEDEPKLGQLLIDYLQAADYQTQWLIRGDEVIAHVQKRQPDIILLDIML--PGLDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 68  SICREIRRFSDVPIVMMTARTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYR 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         +  +         V  L   E R+L+ + +  G+  ++ Q+ + +Y  
Sbjct: 128 PQDIISEHGSLTIDENHFQARYLDRVLELTPVEFRLLKIMSSQPGRVFSRDQLLNNLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  ++SHI  LR+KL         + S   LGY  +
Sbjct: 188 H-RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228


>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D    ++     E       +    +  ++  L       +
Sbjct: 3   ILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVML--PKLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
              + +R      P++ ++   +    +   D+G DD V KP    E+ AR+ A + R  
Sbjct: 61  SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +  +        +   L  +E  +LE L+ + G+  +++ I   ++ 
Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   EE  V+ HI  LRKKLR      D + +   +GY +
Sbjct: 181 WDDPPGEE-AVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRL 221


>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
 gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
 gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         + ++  ++  +       L
Sbjct: 4   IMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMV--PRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        D   +    +      + S+ + D++ I+           
Sbjct: 4   ILIADDEEEIIELLSLYLEKDKHCIYSAVNGLEAFEIISNNKVDIAIIDIM--MPKIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR    +P+I +S        +   D G DD V KP +  E++ARV A  RR   
Sbjct: 62  HLIKKIREKYDIPIIMLSAKSEYSDKILGLDLGADDYVTKPFNAMEVVARVNAQLRRYNK 121

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G +R+  +            L   E +I+ YL+ N+G+   K
Sbjct: 122 LKKNTYVNLKEKKSYLECGNLRLNINTCTLYKDNVEVYLTSTEYKIISYLLENKGRVFTK 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            QIF  ++       ++N +  HIS LR K+ +       + + R LGY +D N
Sbjct: 182 KQIFEYVWEEP-FYGDDNAIMVHISNLRDKVEDDSKNPKYIKTIRGLGYKLDAN 234


>gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 265

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ ++     +  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124

Query: 121 VSNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +          + S           +     +   L   E  +L  L+   G+ VA + 
Sbjct: 125 RAPVGTSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTVAPSL 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +      L      D+  ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVML--PDMDGF 70

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
            + R +R      P++ ++        +     G DD V KP         I A +    
Sbjct: 71  TVTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N     G + +  D  +    G +  L   E ++L YLM N  + ++K+QI   
Sbjct: 131 SLEDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+      D             + +KR +GY +
Sbjct: 191 VW-EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYML 245


>gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 253

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +         +    SL     L  + R D+  ++  L       L
Sbjct: 23  ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRML--PDGDGL 80

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            L + +R    Q+P++ ++       T+   +SG DD + KP    E+ AR       + 
Sbjct: 81  LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   +R+  D R+        PL  +E  +L +L  +  +  ++TQ+  A+
Sbjct: 141 SATPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G +     E+ V SHI++LR KL +     + V +   +GY  
Sbjct: 201 WG-YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243


>gi|15596634|ref|NP_250128.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100871|ref|ZP_01364789.1| hypothetical protein PaerPA_01001901 [Pseudomonas aeruginosa PACS2]
 gi|116049382|ref|YP_791815.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892691|ref|YP_002441560.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234536|ref|ZP_04927859.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|254239787|ref|ZP_04933109.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|296390196|ref|ZP_06879671.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106435|ref|ZP_07792666.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9947387|gb|AAG04826.1|AE004573_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115584603|gb|ABJ10618.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166467|gb|EAZ51978.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|126193165|gb|EAZ57228.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|218772919|emb|CAW28731.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879168|gb|EFQ37762.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   D       + G +++  ++      L      DV  ++  L   G     
Sbjct: 4   LIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVML--PGVDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + ++       +    R          L  +E  +L  L    G+ ++KT I   ++ +
Sbjct: 122 ESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 182 -NFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221


>gi|313899159|ref|ZP_07832682.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956052|gb|EFR37697.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 82/233 (35%), Gaps = 15/233 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D         G       +         +   D++ I+          
Sbjct: 4   VILIAEDEASIADAIEIYLKSQGYQTLKAANGAIAWEQLQNNTVDLAIIDVM--MPVMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L   IR   + P+I +S        +   + G DD V KP    E+LARV A  RR  
Sbjct: 62  IALTMKIRELYEFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHL 121

Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 E                    ++  V GE   L   E RIL+  M + G+  + 
Sbjct: 122 RYQQLLEQKQEVEDRLLLGGIELHRKSKEVFVDGESRRLTPIEFRILQLFMEHPGQVFSS 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             I+  ++   + AV    V  HI  LR+K+  N      +     +GY I+ 
Sbjct: 182 DDIYEHVWN--ETAVNTETVMVHIRNLREKIEINPRAPRYIKVVWGVGYKIEK 232


>gi|268609776|ref|ZP_06143503.1| regulatory protein VanR [Ruminococcus flavefaciens FD-1]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +L+          DG  +    + +  E   ++   D+  ++  L        
Sbjct: 4   ILIVEDDSLLNKTLAYNLASDGYEVMAALNAKNAEAKLTTNEYDMVLLDINL--PDGNGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL ++I   H    ++ ++      + +  ++ G  D + KP     +  +V A++  L+
Sbjct: 62  ELCKLIKPEHPDTVVLFLTANDQESSQIRGYEVGAIDYITKPFSIVALQKKVKAMFAMLE 121

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +    +   + G+   +   E ++L     N  + + +  +   +
Sbjct: 122 HHKPLQDIFDNGKLFLDFSEQRAALNGKPISMSAMEFKMLHLFCKNPKRVLTRQLLLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + +  V+E+ + + IS+LR K+        + +   +GY 
Sbjct: 182 WDIDENYVDEHTLTTSISRLRSKIEADGDI-YIKTVYGMGYQ 222


>gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 216

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV         +  
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GITYIKTVKGIGYKIE 215


>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   +GY  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225


>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
 gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
 gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
 gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G  +    + E    L  S    +  I   ++   +   
Sbjct: 9   ILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADST---IDLIILDVVMPVKTGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  +  P++ ++        +  F +G DD ++KP  + E+++RV ++ RR  +
Sbjct: 66  VACSEIREKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + +             V  D +D  + G+   L   E  IL  ++ NR K  +   +
Sbjct: 126 YQGKEKEKEPNILKTKELCVNLDTQDVTLNGQPVFLTTIEYSILVLMLKNRKKVFSSENL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +  I+         N +  HI  LRKKL         + +    GY ID
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYID 234


>gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   +      L  +   +++  +  E    L  +   D++ ++  L    G  +
Sbjct: 3   ILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           L   R   A  Q P++ ++   +++  +   D+G DD + KP  ++E+    R  +    
Sbjct: 63  LRAMRK--AGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E GP R+  + R     GE   L  +E ++LE  M N  K ++K  I   ++
Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V  N VE+++  LRKK+        + + R +GY  
Sbjct: 181 G-PDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221


>gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 93/234 (39%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G ++   ++ E    L  +    ++ ++          +
Sbjct: 5   ILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANEIHLAVVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R +   P+I +S        +   + G DD + KP    E++ARV +  RR   
Sbjct: 63  TMVLKLRENYDFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRRYNQ 122

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                E   +                  ++  V      L  +E +ILE LM+  G+  +
Sbjct: 123 ILALKENRNLNNNQQRLVVGGLELDKFTKEVFVNDRGVRLTAKEFQILELLMSYPGRVYS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +I+ A++   +EA+    +  H+ KLR+K+  N    + +     +GY I+ 
Sbjct: 183 AEEIYEAVW--KEEAINTETIMVHVRKLREKIEANPKKPEYLKVVWGIGYKIEK 234


>gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in
           phosphate regulation [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in
           phosphate regulation [Flavobacterium psychrophilum
           JIP02/86]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   V +        +G  +    + +            +  ++  +    G + 
Sbjct: 8   ILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMPEMDGMEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            E+ R +   + V +  ++      + +  FD+G DD + KPI  +    ++ A +  I 
Sbjct: 68  CEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKVKALLRRIK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G I +  +  +    G    LPR+E  +   L +  GK   + +I   
Sbjct: 128 EEESPKSETLIIGDIEINREEYNVIKDGVEIILPRKEFELFYLLASKPGKVFKREEILDK 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  +  V    ++ HI KLR+K+ +    +   + + +GY  +
Sbjct: 188 VWG-SEVVVGGRTIDVHIRKLREKIGD----EYFKTTKGIGYKFE 227


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +       ++ +    +      D   ++  L   G    E
Sbjct: 9   LIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLML--PGLSGEE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S VP++ ++        +   D G DD + KP   +E++ARV AI RR    
Sbjct: 67  ICNRIRLQSDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSNE 126

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             RA    +      V   G +   +GE+  L   E ++L   + N GK  ++ ++   +
Sbjct: 127 GVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D    +  ++ HI  +R K+     +  + +   +GY  
Sbjct: 187 LG-YDYVGYDRTIDVHIKNVRHKIE-CEQYKYIVTVYGVGYRF 227


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   ++      +      D   ++  L       +
Sbjct: 5   ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLML--PQLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + IR    Q+P+I ++   S    +   + G DD + KP   +E+L+R+  I RR  
Sbjct: 63  EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   +   I +       +   E   L   E ++L YL  N  + +++ QI 
Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G ++   +  +V+ HIS LR KL  +      + + R  GY  
Sbjct: 183 EKVWG-YEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228


>gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +                   +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +      +G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKEGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVML--PNISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R IR  ++ +P+I ++   S+   +   D G  D + KP         I A +    
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTT-PDIALMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 233

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                         L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  +      +      ++   D+  ++  L   G   LE
Sbjct: 6   LVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLML--PGLDGLE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           + R +R     VP+I ++        +     G DD ++KP   RE++ RV         
Sbjct: 64  VCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGE 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + V +  R   + G    L  RE  +L YLM +  + + + ++   +
Sbjct: 124 PRTAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPARALGRAELLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+  +      + +   +GY  +
Sbjct: 184 WGWN--FGDQSTVTVHVRRLREKVEADPANPHRIVTVWGIGYRYE 226


>gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
 gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 15  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNPYQLVILDILL--PGMNGH 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 73  ELLREFRKLNNTPVLMMTALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+   GK ++   I S ++G +
Sbjct: 133 VAKEIHYGKLTLLPEDFKVFYDDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL +    + + + R +GY ++ 
Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 228


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++         G  +           L +    D+  ++  L        
Sbjct: 6   LVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVML--PDLDGF 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++     Q  +     G DD V KP    E++AR+ AI RR  
Sbjct: 64  EVTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTN 123

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +       + +  D  +    G V  L   E ++L YLM N G+ ++K QI   
Sbjct: 124 HQIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+      D       + +KR +GY +
Sbjct: 184 VWD-YDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYML 232


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|164688779|ref|ZP_02212807.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM
           16795]
 gi|164602255|gb|EDQ95720.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM
           16795]
          Length = 216

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++D         G  +         E    + + D+  ++  +   G    
Sbjct: 3   ILVVEDEAPIRDLISINLQLVGYEVFTAEDGIIAEKFLENQKVDLILLDVMI--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+ H   P+I ++   S+   +     G +D + KP    E+LARV  + RR   
Sbjct: 61  SLIEKIKKH-NTPVIFVTAKESVLDRVKGLRLGAEDYIIKPFETIELLARVEVVLRRYNK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   I V ++ R   +  +   L  +E  +L  L+ N+ + +++ QI   ++  F
Sbjct: 120 NKQTIKFKNIEVDTEQRIVNLNNKEVYLTVKEYELLVLLLQNKNRALSRDQILERVW-RF 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   E   V+ HI ++R+KL  K     + +   +GY ++ 
Sbjct: 179 EYGGETRTVDIHIQRIREKLDLKNN---IKTVFKVGYRLEE 216


>gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      + + A  ++  ++  L        
Sbjct: 3   ILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDL--PEIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            +   IR +S+ P++ ++    L   L  FDSG DD + KP    E+LARV +       
Sbjct: 61  GVLASIRRNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 VSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFENKLIHTLRGVGYVLE 221


>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   + +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A        +    E    ++    R+    G+   L   E  +L+ L+ +  + +++ +
Sbjct: 126 AEAPGAPSQAEQIVEFAHYKLNLATREMSADGKPMTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D    E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYGALERSIDVQVSRLRRMLEQDPTNPRYIQTVWGLGYVF 233


>gi|5764628|gb|AAD51348.1|AF173226_5 SmeR [Stenotrophomonas maltophilia]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G++ E  +         +  + D+  ++  L  +    +
Sbjct: 11  ILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFARYQPDLVLLDLMLPQR--DGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 69  DLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +          G+   L   E R+L  L+A  G+  A+ ++   +Y   
Sbjct: 129 DPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 188

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V+   V+SH+  LR+KL +     +P+ S   +GYS +
Sbjct: 189 RVVVD-RTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 228


>gi|295109503|emb|CBL23456.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +             S+   +S      + +  ++++  I   L+       
Sbjct: 6   ILVVDDEIKLLQTVTEFLTLQNFSVMQASSGSEALKIFTENKKEIELILLDLMLPDISGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I +S    +   ++ F+ G DD + KP     +   + A+ +R   
Sbjct: 66  SVLREIRKISDVPVIILSARSEVTDQMNGFEKGADDYITKPFSLGLVKLHIEAVLKRAGK 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E G I++    +    + E+  + RRE  +L Y + ++   +++  I +A++  +
Sbjct: 126 MKNILECGKIKIEKGRQLVYREDEMLEMTRREYELLLYFIEHKETVLSRETILNAVWD-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D A +   V++ + ++RKKL +      + +   +GY  +
Sbjct: 185 DYAGDVRTVDTLVKQIRKKLGDDCN--YIHTVYGIGYLFE 222


>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
 gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +  F+  +         + ++  ++  +       L 
Sbjct: 5   MLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMV--PRMDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+  
Sbjct: 63  ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I     
Sbjct: 123 AEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 182 FDVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFEY 225


>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  D+   ++   S +           D+  ++  L       +
Sbjct: 6   ILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIML--PDIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR      +I ++        +   + G DD + KP    E+ ARV A  R+ K 
Sbjct: 64  DVCRKIRDKFLGTIIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRKQKR 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I +  +  +  V  +   L  +E ++L Y++ N    + + QI+
Sbjct: 124 LNSLNLKNDETIRYKSIEINKNSFEVFVDRQRIILSTKEFQVLYYMIENHNIVLTREQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++++G  D   + N V  HI KLR+K+        + +   +GY  
Sbjct: 184 NSVWGFGDF-GDINTVTVHIKKLREKI--PGCDRFIKTVWGIGYKF 226


>gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 241

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +   F + E       S   D+  ++  L       +
Sbjct: 4   ILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSL--PDIDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR   +  P+  +S        +   + G DD + KP   RE+  RV   +RR  
Sbjct: 62  EICRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                               ++ S  R   +   +  + R+E  IL+ L  + GK  ++ 
Sbjct: 122 KKIGIKPNVGQAGEIIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            I  +++G+ +    E +++SHI ++R KL       + +++   +GY    N
Sbjct: 182 MILESVWGV-EWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++    +  D+G S+    +           + D+  ++           
Sbjct: 4   ILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIM--MPQMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  +  R +   +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR K
Sbjct: 62  EFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYK 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ +R        +           E F +P +E  +L  L +  GK +++ ++   ++G
Sbjct: 122 VAASRIINIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           L D    E  ++ HI++LR++ ++ +    + + R LGY ++ 
Sbjct: 182 L-DFEGNERTLDVHINRLRERFQSDIYKFKITTIRGLGYRVEE 223


>gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC
           5463]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDIMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +    +       +          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  +    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVW-KQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   +++         G  +   ++      +    + ++  ++  L    G +V
Sbjct: 6   ILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHMDGLEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
               +       + +I ++        +  F+ G DD V KP   R     I A +   Y
Sbjct: 66  CRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAVLRREY 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R         +   +    +  + +V G    L   E ++L+ ++ N G+ + + ++ + 
Sbjct: 126 RSDSGVERIWKHKGLEFDFEAMEFKVDGINVSLTATEMKLLQEMVQNEGRVLTRERLLNN 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++       V++H+ +LR KL      D + + R LGY  
Sbjct: 186 VWG-YEFEGYARTVDTHVRRLRAKLEPYS--DLIQTARGLGYKF 226


>gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 3/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +   +           +   A+  V  +    +      L 
Sbjct: 6   LIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGLT 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+   
Sbjct: 66  VLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWST 125

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S ++       +V       EV G+   L +RE  +L Y + +RG  V++  I   ++G+
Sbjct: 126 SCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVWGM 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 186 -DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGVGYRLN 225


>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  +S +    +    + D   ++      G     
Sbjct: 12  LVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVM--MPGMDGFS 69

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 70  LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +             D   +         L   E ++L YLM N    ++K +I   +
Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+        + + R +GY +
Sbjct: 190 W-NYDFGGDGNVVESYVSYLRRKIDTD-DPRLIHTVRGVGYVL 230


>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
 gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
          Length = 267

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        D G ++   +  +  E L    R DV  ++      GE  L
Sbjct: 31  ILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVM--MPGEDGL 88

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA    +P++ ++        +   + G DD + KP + RE+ AR+ A+ RR +
Sbjct: 89  SLCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQR 148

Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +              + GP  +    R     G   PL   E  +L+ L  + G+ + + 
Sbjct: 149 MLGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRD 208

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++     G  D    +  ++  + +LR+ + +       + +   LGY +
Sbjct: 209 RLIELSRGR-DHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVL 257


>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +   ++     +      +SA+ D+  ++  L       +
Sbjct: 5   ILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVML--PSLSGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P+I ++   +    +   D G +D V KP    E+LARV +  R   
Sbjct: 63  EVLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRS 122

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                    +  + R+     E   L  +E  ++ YL+ N+ K V + 
Sbjct: 123 LVEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I + ++G ++   E NV++ +I  LRKK+        + + R +GY +
Sbjct: 183 GILTNVWG-YEYEGETNVIDVYIRHLRKKVDEGFSTSLIHTVRGVGYMM 230


>gi|283780370|ref|YP_003371125.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283438823|gb|ADB17265.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +   +  +           D+  ++  L       L+
Sbjct: 7   LVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLML--PVIDGLD 64

Query: 63  LPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIY 116
           + R +RA S +     I ++        L  F  G DD V KP   +   E +  +    
Sbjct: 65  VCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKALRRRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + V          G+   L R E R+L+ L+   G+   + ++  A
Sbjct: 125 SGEATPEEVTSRLGVTVDRRRHQAMADGKPLQLTRSEFRLLDTLIRQPGRVFHRAELIDA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G  D  V E  ++ HI  LR+KL      D +++ R +GY 
Sbjct: 185 ALGE-DTMVMERTIDVHIRALRRKLGQY--ADVIETVRGVGYR 224


>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++             +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDYDLLVLDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ ++  R   
Sbjct: 61  TLLQNLRRSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 263

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 8   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 68  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 127

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  L+   G+ V+   I
Sbjct: 128 RAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVSPALI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 188 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLE 235


>gi|284031819|ref|YP_003381750.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283811112|gb|ADB32951.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 233

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++        D+G  +      +    L   A  D+  ++  L         
Sbjct: 6   LIVEDDDRIRAVLRLALEDEGYQVAEAGDADTALDLTRKAMPDLMIVDLMLGA--TDGYT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R +R  S +P++ +S        +   ++G DD V KP   +EI AR+ A+ RRL+ +
Sbjct: 64  CIREVRRSSDIPIVVVSARSDTHDIVAGLEAGADDYVTKPFQVKEITARLRALRRRLRTA 123

Query: 123 NNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + AE   +      R            + G+  PL   E R+L  L    G+ +++  +
Sbjct: 124 ADDAEPDIVLDADPRRSLVLSRARGAARLDGQDVPLTVTEFRLLSELARIPGRVLSRQAL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             A++       +E +V+ HI +LR K+  +      V + R LGY +D
Sbjct: 184 LEAVW-EHGFYGDERIVDVHIRRLRTKIERDPGHPAIVVTVRGLGYRLD 231


>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 221

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           ++E  +         +    D+  ++           
Sbjct: 6   ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVM--MPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S VP+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 64  EVAKMIRSQSNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +N      +RV  D     V      L  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++HI  +RKKL        + + + +GY ID 
Sbjct: 184 -YDYIGESRIIDTHIKNIRKKLDIP----YIKTIKGIGYKIDE 221


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G  +   NS E           +       ++  G   L
Sbjct: 4   ILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGIDGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R  S    +I ++        +     G DD V KP    E++ARV ++YRR+ 
Sbjct: 64  TVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRRVA 123

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++  R E                  R  + +G +  L + E +I+EY  +N G  + +T 
Sbjct: 124 IAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDRTN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I + ++G      EE +V+ +I +LR K+ +       + +   LGY  +
Sbjct: 184 ILTHVWGEA-YYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGYKWE 232


>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++                        L      D+  ++  L   G   +E
Sbjct: 7   LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWML--PGTSGVE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++     + +P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +   G     Q     +   E R+L++ M ++ +   ++Q+   +
Sbjct: 125 TPPGVDSPIEVEGLTLDPVGHRVTTQDGALTMGPTEYRLLQFFMTHQERVYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L ++     + + R  GY  
Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKALGDQYDH-LIQTVRGTGYRF 225


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +  ++           +  S   D+  ++  L   G   +
Sbjct: 5   ILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVML--PGLNGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P+I ++   ++   +  F+ G  D V KP    E+LARV  I R   
Sbjct: 63  EVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFA 122

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E   +            R    +     L  RE  +L YL  ++ +  ++  I 
Sbjct: 123 QHTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           S ++G +D   E N+V+ +I  LR+KL     +  + + R +GY + + N
Sbjct: 183 SEVWG-YDFIGETNLVDVYIRYLRQKLDKGFRYKLIHTVRGVGYMLKEPN 231


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A+       ++  N  +       S+  D+  ++  L       +
Sbjct: 3   ILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPL--LDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L   +R+H+   P++ ++   + Q  +   D+G DD + KP+   E+ AR+ A + R  
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +++      + + +   D    G+   L  +E  +LE LM NR +  +  +I   ++ 
Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            FD+    N V +HI  LR+KL+    G + +++   LGY ++ N
Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +      L    G+     +          S+  D+  ++  +    G ++ 
Sbjct: 499 MIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIELC 558

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           ++ R       +P++ ++     Q     F +G DD + KP 
Sbjct: 559 QIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPF 600


>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
 gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 7   ITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWML--PGISGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           EL R +RA  +    P+I ++        +    +G DD V KP    E+    R     
Sbjct: 65  ELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V ++  + G I +  +      +     L   E R+LE+LM++ G+  ++ Q+   
Sbjct: 125 ASPEVISSLLKVGDIELDRETHRVRRRARDIKLGPTEFRLLEFLMSSPGRVYSRAQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK +      D + + R  GYSI+
Sbjct: 185 VWG-HDVYVDERTVDVHVGRLRKAVNLSGMRDIIRTVRGAGYSIE 228


>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 233

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAQGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
 gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
          Length = 242

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +    + +  +    +A+ D+  ++  L   GE  L
Sbjct: 6   LLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLML--PGEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I +S        +   + G DD ++KP +  E+LAR+ A+ RR   
Sbjct: 64  TLCRNLRAQSNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRRSTQ 123

Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +     I  F       +  +    QG    L   E  +L+  + +  + +++ Q+ 
Sbjct: 124 ITKQVTDSQILHFERWTLDINRRQLLNHQGINIILSSAEFSLLKVFLEHPQQVLSRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               G  +  V +  +++ +S+LRKKL  +      + +    GY +
Sbjct: 184 DLAKGR-EGDVYDRAIDTQVSRLRKKLEKDPKQPCLIKTIWGGGYQL 229


>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++D                      +   +    D+  ++  L G  G  +
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R  +   ++P+I ++        +   ++GVDD V KP   RE+    R      R
Sbjct: 65  ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +R+              P+   E R+L + M +  +   +TQ+   ++
Sbjct: 125 EDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|284989870|ref|YP_003408424.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063115|gb|ADB74053.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++    +    G  +    S             DV  ++  L        E
Sbjct: 7   LVVEDTEEIRELVCTVLRRAGTDVRAVASGAEALAEVRRDAPDVVVLDLGL--PDADGTE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S+  ++ ++        L     G D  + KP   RE++ARV A+ RR +V 
Sbjct: 65  VCRQIRAESECYVLMLTARAEEVDLLIGLAVGADGYMAKPFSPRELVARVQALLRRPRVP 124

Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R+              V  D R+  V G V  L R E  +L  L +  G+ + +  + 
Sbjct: 125 APRSAPVEESVLRLAELEVDEDSREVRVDGAVVDLTRTEFDLLTALASRPGRVLQRETLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++   D      +VE+H+S LR+KL+        + + R +GY +
Sbjct: 185 REVW-QTDWEGSVRLVEAHMSNLRRKLQAAGLSSPSIRTVRGVGYRL 230


>gi|196032666|ref|ZP_03100080.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903983|ref|YP_002451817.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228927912|ref|ZP_04090957.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228934132|ref|ZP_04096971.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228946472|ref|ZP_04108790.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229122407|ref|ZP_04251620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|254722832|ref|ZP_05184620.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|195995417|gb|EDX59371.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539029|gb|ACK91427.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228660968|gb|EEL16595.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228813220|gb|EEM59523.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228825300|gb|EEM71094.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228831602|gb|EEM77194.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 215

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +    ++  ++             D+  ++  L   G    
Sbjct: 3   ILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + + +R     P++ ++    ++  +   ++G DD + KP    E+LAR+ A+  R   
Sbjct: 61  WILKDLRETKDTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGRG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +    R     G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + N +E  + +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFDSDTNAIEVAVRRLRAKIDDPFDRRLLHTVRGMGYVLEE 221


>gi|307330420|ref|ZP_07609564.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883937|gb|EFN14979.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 94/234 (40%), Gaps = 23/234 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 2   LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMV--PGLDGVS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 60  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 119

Query: 123 NNRA----------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +                     G + +  +G +    G    L   E R+L    A  G 
Sbjct: 120 SGPGGRGAEPVPEEPDGGVLCFGDLEIDPEGMEVRKGGRQVALTPTEMRLLLEFSAAPGT 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 180 VLSRDRLLERVW-EYGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 228


>gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +      L    G         +    L  + R D+  ++  L  K     
Sbjct: 5   IAVVEDDREISSILKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYK--NGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            L   +R+ S+ P+I IS    ++T LD    G DD + KP    E+     V       
Sbjct: 63  RLIGELRSRSETPVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSGA 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G + + ++       G    L  +E  +L+  M +  K   K +++  ++ 
Sbjct: 123 FAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVWN 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 E+N +  H+S LR KL+   G D +++   +GY +
Sbjct: 183 EV-YYYEDNTINVHVSNLRSKLKKVSGKDHIETVWGIGYRL 222


>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 245

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G  +         + L      D+  ++  L    G  V
Sbjct: 5   ILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVDGFTV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++     Q  ++ F+SG DD + KP    E+LARV A+ RR  
Sbjct: 65  CQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALLRRTD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     ++  L   E  +L  L+   G+ V+ ++I 
Sbjct: 125 RIPQAAKHAEILSYGPLTLVPERFEAIWYAQIVKLTHLEFELLHCLLQRHGQTVSPSEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR K+  +      + +    GY ++
Sbjct: 185 KEVWG-YDPDDDIETIRVHIRHLRTKMEPDPRHPRFIKTVYGAGYCLE 231


>gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein
           [Zunongwangia profunda SM-A87]
 gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family
           protein [Zunongwangia profunda SM-A87]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 99/218 (45%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++  +++  ++ +    L  + + D+  ++  L   G   +
Sbjct: 3   ILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWML--PGLSGI 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R   +   + P++ ++   ++  T+    SG +D + KP H  E+L R+    R   
Sbjct: 61  EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     GPI + +        G+   L  +E  +LEYL+ N+ +   +T+I   ++ +
Sbjct: 121 GEHAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +    V++ +I+ LR+KL      + + + R +GY
Sbjct: 181 -NFSYNTGVIDVYINALRRKLDLDQDENYIQTVRGVGY 217


>gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +   +          +   D+  ++  L       +
Sbjct: 7   ILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIML--PKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E    IR   Q+P+I +S        +    SG +D + KP +  E++A      R   +
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y+  +V     E G ++V    R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEKTRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            ++        +N V  HI+K+R+K+         + +   +GY 
Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++   +  E    +       +  ++          L
Sbjct: 4   ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIM--MPHMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R +R    +P++ +S        +    +G DD V KP +        + ++ R   
Sbjct: 62  EVCRRVREKYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYF 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +++VS +      + +        +  +   L  RE  IL  L  NRG   +  +IF
Sbjct: 122 LNLKMQVSEDLIRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+ +   G   + +   +GY I+ 
Sbjct: 182 EKVWKER-YYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGYKIEK 229


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +    +             D   ++  L   G   L
Sbjct: 7   ILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLML--PGVDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R IR  +   P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 65  EICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ + +++         + +    R+  + G+   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHPGEVFSRLTL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
              ++G +     E+ V +HI++LR K+  N    + + +    GY    N
Sbjct: 185 LDRVWG-YQHEGYEHTVNTHINRLRIKIERNPAEPEIILTVWGKGYKFATN 234


>gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7]
 gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++   N+ +    +    R D+      ++      +
Sbjct: 6   ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMV--ERYDIHLAIVDIMMPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR +   P+I +S        +   + G DD V KP    E+LARV++  RR   
Sbjct: 64  EMTMKIRENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 123

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             N                       D ++  V G+   +   E +ILE LM   G+  +
Sbjct: 124 YLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             QI+  ++   + A+    V  H+  LR+K+  N      +     +GY I+ 
Sbjct: 184 SEQIYENVW--HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEK 235


>gi|145594981|ref|YP_001159278.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304318|gb|ABP54900.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 334

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D +++         D G  +           + +    D+  ++  L       
Sbjct: 108 LILLVEDDSIITAALSRALTDAGHVVRAVGQAAEALRVLTGEPPDLVLLDLGL--PDIDG 165

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            +  R+IR+ S+VP++ I+   S    +   +SG DD V KP     ILAR         
Sbjct: 166 TDTLRMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYR 225

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +        GP+ +    R   + G    L RRE  +L YL    G+ V++ ++ +
Sbjct: 226 SGTDREGPGAITVGPLVIGRKERRVTMHGNPLKLTRREYDVLTYLAERVGQVVSRRELMT 285

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLG 217
            ++       EE  ++ HIS LR+KL         + + R +G
Sbjct: 286 EVW-RQARIGEEQTIDVHISWLRRKLGETAAKPRLLHTVRGVG 327


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +  S++     E      + A  DV  ++       +  L
Sbjct: 3   ILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIM--MPKKDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  +  VP++ ++   S++  +   D+G +D + KP    E+LAR+  + RR +
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +         V  D       G+   L  +E  +L Y++ N+G  +++ ++   ++ 
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 180 NYDYAGGSNVIDVYIRYLRKKIDESFKEKLIHTVRGAGYVL 220


>gi|153939612|ref|YP_001390321.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935508|gb|ABS41006.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318412|gb|ADF98789.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 240

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IR+ S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRSKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +    N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGEIIELKPKELALISFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234


>gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   + +        +G            +    +   DV  ++  L   G   
Sbjct: 6   MVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWML--PGASG 63

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115
           L L R  RA S+    P++ ++        +   D+G DD + KP   +E+    R    
Sbjct: 64  LSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R  +   ++   G + + +       QG++  +   E ++L YLM +  +  ++ Q+  
Sbjct: 124 RRAPEQVQDKVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     +EE  V+ H+ +LR+ L        +++ R  GY  
Sbjct: 184 KVWGDH-VFIEERTVDVHVKRLRESLGVAG--VLIETVRGAGYRF 225


>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 240

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +++        +G  L           L      D+  ++      GE  L
Sbjct: 7   IAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR+ S  P++ +S        +   + G DD + KP + RE+LARV A+ RR   
Sbjct: 65  SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           ++  A +        G                    L   E R+L  L+   G+ V + +
Sbjct: 125 ASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + + + G   E  +   +++ IS+LR+K+  +      + +    GY+ 
Sbjct: 185 LLNKVSGRASEPFD-RSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232


>gi|124266822|ref|YP_001020826.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124259597|gb|ABM94591.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G  ++  +       L      D+  +++ L   G   L
Sbjct: 3   LLVVEDEVKLAEYLRKGLTESGYVVDVAHDGIDGLHLAMEGNYDLLVLDSML--PGIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116
            L   +R     P++ ++    +   +     G DD + KP    E+ AR+         
Sbjct: 61  ALLAALRRSKHTPVLMLTARVHVDDRVRGLQGGADDYLTKPFAFTELTARIQVLLRRAAP 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + V    R     G+   L  +E  +L  LM  +G+ +++T++ + 
Sbjct: 121 SQSASEPTLLRIADLEVDLLRRKAVRAGQRLDLTAKEFSLLALLMRRQGEVLSRTELAAQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++ + +   E NVVE  I +LR K         + + R +GY ++ 
Sbjct: 181 VWDM-NYDSETNVVEVAIRRLRNKFDAPFEQVLLHTVRGMGYVLEE 225


>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 88/223 (39%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +++D   +          +   +   N+ E           D+  ++  L    G ++
Sbjct: 5   IFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLSGIEI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               +  +    +P+I ++     +  +   ++G DD + KP  H E++AR+ A     +
Sbjct: 65  CRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALLRRVK 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +      ++V    +      +   L   E R++ + + N  +  ++ Q+   ++
Sbjct: 125 PQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            L    VE   V+ HI +LRK +      D + + R  GYS+D
Sbjct: 185 -LNSINVELRTVDVHIRRLRKAINLPGKKDLIRTVRSTGYSLD 226


>gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 77/225 (34%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++   ++   +             D++ ++  L        
Sbjct: 3   ILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVML--PDMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
            + + IR     P+I ++        +     G DD + KP        R          
Sbjct: 61  TICKTIRQKHTWPIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRRYKR 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++          + +  D     +  +   L   E RIL YL   +GK V+  ++++A
Sbjct: 121 YNVQQKAQELSYLGLVMNRDLHICRLNEKDVFLTPIEFRILWYLCERQGKVVSAKELYTA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+         N +  HI  +R+K+ ++      + +   +GY +
Sbjct: 181 IWQEEYLTSSNNTLMVHIRHIREKMHDRGEHPRYIQNVWGVGYKL 225


>gi|75908138|ref|YP_322434.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701863|gb|ABA21539.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L       +  ++  L        
Sbjct: 11  ILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNL--PDTSGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
            L + +++ + V ++ ++        +    +G DD + KP         + A +  I  
Sbjct: 68  SLCQEMQSRNNVLVMILTGRTEEADKIKILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L ++ G+  ++ Q+   I
Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKKL +     + + + R  GY  +
Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231


>gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D A + +   A   + G  ++  ++ +           DV  ++  +   G+  L 
Sbjct: 4   LFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMV--PGKDGLS 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           + +++R      P+I ++    L   L   + G DD + KP    E+ AR+   + R + 
Sbjct: 62  ILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSVS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    GPIR+    R+     +   L  RE  +LEYLM + G+   +TQI   ++G 
Sbjct: 122 NRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+  I ++RKK+        ++S R +GY  
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPIDEPVWIESIRGVGYRF 220


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F ++G +++     E   +   +   D   ++  L       L
Sbjct: 3   ILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIML--PVIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
            + + +R  ++  P+I ++   +++  +   DSG DD + KP    E +    A I R+ 
Sbjct: 61  TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S+   +   + + +  +  +   +   L  +E  +LEYL AN+ K +++T I   IY 
Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + NV++  I+++R K+        V + R +GY++
Sbjct: 181 E-EFDFDSNVIDVFINRIRNKIDKNFDKKLVHTIRGMGYAL 220


>gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  ++   + E    L       V  ++  L   G    +
Sbjct: 4   LVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLML--PGRNGYD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +RA     P++ ++         D  D G DD + KP     +LAR+ A + R   
Sbjct: 62  VCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +           E   L  RE  +LE+L+ +    V+KT + + ++  
Sbjct: 122 QRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    + N+VE ++  LR+K+    G   +D+ R +GY +D
Sbjct: 182 W-FEGDPNIVEVYVGYLRRKIDIPFGRSAIDTVRGVGYRLD 221


>gi|291302356|ref|YP_003513634.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571576|gb|ADD44541.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G +    ++         +   D+  ++  L        
Sbjct: 4   ILIIEDSERITAFLTKGLAAAGFTPSVAHTGAEGLGRALTGEVDLIVLDIGL--PDMDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA  +  P+I ++   S    +     G DD + KP    E+LAR+    R + 
Sbjct: 62  DLLRALRAAGRDTPVIILTARDSATDRVTGLSDGADDYMPKPFSVDELLARIRLRLRPVS 121

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      +         R     G    L  RE  +L+ LM N G+ +++ Q+ S +
Sbjct: 122 GGGSDQAVLRVGDLELDLRTRAVRAGGRQVELTARELSLLDTLMRNAGQVLSREQLLSRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G FD     NVV+ ++  LR+K+    G D +++ R LGY +
Sbjct: 182 WG-FDFDPGSNVVDVYVRYLRRKI----GADRIETVRGLGYRL 219


>gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 4   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I  R   
Sbjct: 62  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 122 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 182 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221


>gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 242

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D    L   +G  +               +  D+  ++  L   GE  L
Sbjct: 10  ILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLIESSVDLVVLDLML--PGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA + +P++ ++        +   + G DD + KP   RE++AR+ A+ RR + 
Sbjct: 68  TLCRDLRASTNIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRRTRS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
                 +    ++  GR                   L   E  +L+  +      + + Q
Sbjct: 128 VPPGTRSQIACLWRFGRWTFDTATRSLKSTDDALLSLSTAEFNLLKVFVERPQIVLTRDQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G   E ++   +++ IS+LR+K+         + +    GY  
Sbjct: 188 LLDLTRGRESEFID-RSIDTRISRLRRKIEEDPQNPQILKTVWGDGYVF 235


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++ +D   +          +G  +      +    + +  + D+   +  +    G +V
Sbjct: 7   IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKVSGIEV 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P++ ++        +   D+G DD V KP    E++AR+ A+ RR++
Sbjct: 67  TRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRRIR 126

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S +R   G I +       +  G    L   E ++L+YLM +  +  ++ Q+  A++
Sbjct: 127 PGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLDAVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  VE   V+ HI +LRK L     +DP+ + R  GYS+D
Sbjct: 187 GN-DVYVEARTVDVHIGRLRKALNADTDYDPIRTVRSAGYSLD 228


>gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16]
 gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A + +            ++  N          S   D+  ++  L   G   LE
Sbjct: 6   LVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLML--PGADGLE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           + R +RA  +  P++ ++   +    +   + G DD + KP          + I   V  
Sbjct: 64  ICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDT 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           +   + +  D R+  V+G    L  +E ++L Y  +N G+  ++ Q+ 
Sbjct: 124 LANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G +  +  E+ V SHI++LR K+  +    + + +   +GY  
Sbjct: 184 DQVWG-YSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGYKF 229


>gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   +   D G +++         W+    R D   ++  L   G    
Sbjct: 9   LLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVML--PGLNGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++        +   DSG DD + KP     +LAR+ A+ RR  
Sbjct: 67  AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       +V          G    L  +E  +L  L    G+ V KT++    + 
Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE ++S LR+K+        + + R  GY ++
Sbjct: 187 -FAFEGDPNIVEVYVSALRRKIDAPFAVRTLTTVRGSGYLLE 227


>gi|228991673|ref|ZP_04151613.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228767996|gb|EEM16619.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 215

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 94/219 (42%), Gaps = 11/219 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALEIFYEVKIDLAILDWM--MPKRNGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   +L R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSENEDELVALQSGADEYVKKPFHPGILLTRA----KKLLNQ 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DEVIQVQNLKIDLIKNKVYKSDKELEITKTELELIKCFLNHKGTILTREKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +E  V++H+ +LRKK+      D + + R LGYS++
Sbjct: 177 YFGDERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLE 211


>gi|226311027|ref|YP_002770921.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093975|dbj|BAH42417.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +      +   +G+  +   ++             DV  ++  L     +  
Sbjct: 5   LIVDDEEDIVRLLKTVLIKEGIENVYTASTAAEGFGQFQDKHPDVVILDIML--PDGEGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + IR+ S VP++ +S        L     G DD + KP   +E+  RV         
Sbjct: 63  DVCKKIRSISHVPILFLSAKTEEVDKLVGLAIGGDDYIGKPFSPKEVAYRVKAQLRRAEY 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    ++   + GP     +  +    G +  L  +E  +  +L+ +  + ++K +++ 
Sbjct: 123 QQVQVKADPIIQVGPFVFDEEKVELRKHGTIIELKPKELGLFTHLLKHPNQIISKEKLYY 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  D    +N V  HI KLR+K+ +       + + + LGY +
Sbjct: 183 QVWGE-DFFGFDNTVMVHIRKLREKIEDDPSNPTYLLTVKGLGYKL 227


>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +           + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227


>gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
 gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G       S           + ++  ++  L   G    
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYITYSAYSGTEALLFLEKQKVNLIILDLML--PGLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++   I+    VP+IG+S     ++ +    +G DD V KP         I   +  IY 
Sbjct: 63  QVLAEIKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYE 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+    G + + + G +  ++ +  PL + E  IL+ LM +  +   K  I+  +
Sbjct: 123 NQYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +        EN +  HIS LRKK+         + +   +G+ +D
Sbjct: 183 WNET-LEGTENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKMD 226


>gi|153955658|ref|YP_001396423.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856032|ref|YP_002473154.1| hypothetical protein CKR_2689 [Clostridium kluyveri NBRC 12016]
 gi|146348516|gb|EDK35052.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569756|dbj|BAH07740.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  ++   S             D+  ++  L        
Sbjct: 4   ILIVEDNIALSTGLSFDLEREGYKVDTVCSSGQAREAVRETEFDLIVLDINL--PDGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I+    +PLI ++     + T+  F+ G DD + KP        RVAA+ +R + 
Sbjct: 62  ELCRWIKELKDIPLIFLTACDMEKDTIKGFELGADDYITKPFSVGIFRRRVAAVLKRCEK 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N    G + V  D      + + F L   E R+++  +AN GK + +  +   ++ 
Sbjct: 122 ENIGNIYNDGYLMVDFDKLMVIRENKAFMLTSSEYRLMKIFVANSGKVLTRQILLQKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                V+E+ +  ++++LR K++NK G   + +   +GY 
Sbjct: 182 NDGNFVDEHALTVNVNRLRSKIQNK-GHKYIKTVYGMGYM 220


>gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D       + G  ++  ++     +  +    D   ++  L   G   +
Sbjct: 5   ILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRML--PGMDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
            +   IRA     P+I +S   + +  +   + G DD + KP        R  L      
Sbjct: 63  AVLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQ 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R       R     + +    R     G+   L  RE R+LE+L+ +  + V +T +  
Sbjct: 123 GRSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NV++ H+S+LRKK+        + + R  GY +
Sbjct: 183 GVWD-YHFDPGTNVIDVHVSRLRKKIDEGQARPLLHTVRGSGYRL 226


>gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
 gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G + +  N       L  +   D+  ++  L   G    
Sbjct: 3   ILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVML--PGLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR      P+I ++   ++Q  +   + G DD + KP    E+L R+  I RR  
Sbjct: 61  QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V      T     +   G      G+   L  +E  ++  L    G+ + + +I   I+ 
Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   + NVV+ H+ +LR K+ +      + + R +GY ++ 
Sbjct: 181 I-DFESDTNVVDVHMRRLRAKVDDPFEKKLIHTVRGVGYVLEE 222


>gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  +           D+  ++  L        
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLML--PEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICREIRNQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LIGTGIQENDIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLLTFLAQNPNRVFTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+   +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 KEIW-AMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
 gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E             +   D+  ++  L   G   L
Sbjct: 5   ILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVML--PGLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR  S VP+I ++   ++   +   D+G DD + KP    E    +         
Sbjct: 63  EVLRRIRKESVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKRRGT 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++V  +R E   + + +D  +  V GE   L  RE  +L  LM N+   + + ++ SA+ 
Sbjct: 123 VEVHTHRIEIRGVCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSAVC 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E N+++ ++  LR K+ ++ G   + + R +GY I
Sbjct: 183 G-YDYLGETNIIDVYVRYLRTKIDDRFGVKLITTVRGVGYVI 223


>gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++                 D+  ++  L       +
Sbjct: 6   ILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVML--PSLNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S++P+I ++    +   +   D G +D + KP    E+LAR+  +++    
Sbjct: 64  EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N +          ++         +     L ++E  +L+YLM N+   +++  I   +
Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + N+V+ +I  LR K+ +K     + + R LGY  
Sbjct: 184 WG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225


>gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 240

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +    +  ++G              +    + D+  ++  L   G    
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K 
Sbjct: 62  GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKP 121

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          + N  E GPI +          G+   L   E  +L  L A  G+
Sbjct: 122 AAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++++ +   ++G ++ + +  +V  H+ +LR K+ +       V + R +GY  
Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|298251741|ref|ZP_06975544.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546333|gb|EFH80201.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 231

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD     D       ++               L  S   D+  ++  L   G   L
Sbjct: 5   ILVVDDDKKTVDLIRLSLKNEHFETLEAYDGIEALALTRSEAPDLIILDWMLPHVG--GL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L RI+R  S +P+I ++   +    L   + GVDD + KP   RE++ARV  + RR   
Sbjct: 63  DLCRIVRLESTIPVIMLTAKATEDDKLLGLNLGVDDYLTKPFSLRELVARVRVVLRRTYR 122

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  R        + +     +  + G+   L  +E ++LE  + N G+  ++ ++   + 
Sbjct: 123 SEERPATLHFSDLVINVQRHEVWLSGKAIRLTPKEFKLLETFVRNPGRIFSREELVERVC 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  +    +  ++ H+  LRKK+         + +   +GY++
Sbjct: 183 G-SNYDGFDRAIDFHLGNLRKKIDTHSEQPSYIQTVHGVGYTL 224


>gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G     G +G  ++   ++   +    +   D+  ++  L        
Sbjct: 3   ILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTL--PDGSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           EL ++ + +  +P+I ++        +   D G DD V KP   RE+++R+      + +
Sbjct: 61  ELCKVAKENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRRHNK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        IR+ +         +   L   E R+L   + + G+ +++ Q+   I+
Sbjct: 121 TDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLEGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  + V +N V  +I +LR KL +  G    + + R +GY 
Sbjct: 181 DIAGDFVNDNTVTVYIKRLRDKLEDDPGNPTFITTIRGIGYK 222


>gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
 gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 85/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       +    ++  +       L    + D+  ++  L   G    
Sbjct: 3   ILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVML--PGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           ++   +R   +VP++ ++    ++  +     G DD + KP            L R    
Sbjct: 61  DVLHELRKSDRVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRRRGH 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N  + G + +    R     G    L  +E  +L  LM  +G+ +++  +  
Sbjct: 121 IVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDLAE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +     NVVE  + +LR K+ +      + + R +GY ++
Sbjct: 181 QVWDI-NFNSNTNVVEVAVRRLRGKVDDPFETKVLHTVRGMGYVLE 225


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G ++E                 D+  ++  L   G   +
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLML--PGLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQK 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         +++  + R      E+  L  +E  +L   M N  + + +  +   +
Sbjct: 122 EESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL      + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHGVDKEEYIQTVRGAGYVM 223


>gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
 gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
          Length = 242

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 92/235 (39%), Gaps = 20/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS----------AIEA 51
            ++++D   V D        +G  +                  D+            I  
Sbjct: 3   ILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAAR----DLDAMLRELDQRGVILL 58

Query: 52  FLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---- 106
            L+      +E+ + +RA     P++ ++   ++   +    +G DD + KP        
Sbjct: 59  DLMLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLA 118

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            I A +     +   +N   + G + +          GE   L  RE  +LE  +++ G+
Sbjct: 119 RIEALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGR 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++ +I S ++G+ DE    NVV+ ++ +LR K+   L    + + R LGY ++
Sbjct: 179 VLSRERILSNVWGV-DEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232


>gi|325849613|ref|ZP_08170851.1| response regulator receiver domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480094|gb|EGC83171.1| response regulator receiver domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 218

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      +    ++G           S+   ++  ++  +       L
Sbjct: 3   ILVVEDDQIIREGVCEFLSELSYDVDGACDGREALDKFSNNSYNLLILDIQI--PFINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR  S++P++ ++ +   +  +  F +  D  + KP     +  RV ++ +R   
Sbjct: 61  KVLEEIRKTSRIPVLILTAFNDEEYKISAFTNLCDGYMEKPFSLSLLKLRVESLLKRYYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E    ++          GE   +  +E  IL++L+ N G  +++ QI   ++   
Sbjct: 121 DREIFEYKDAKINFSSYKATYGGENIDMNAKELEILKFLLENEGLALSRMQIIENVWKES 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL    G D + + R +GY ++
Sbjct: 181 DEIPYDRVIDVYIKQLRKKL----GLDCIKTIRNVGYKLE 216


>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 234

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMV--PGLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 NNRA---------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                    G + V  +G +    G+   L   E R+L    A  G  
Sbjct: 125 SGPGRGAEAEPDEPEGGVLRFGDLEVDPEGMEVRRAGQQVALTPTEMRLLLEFSAVPGTV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 LSRDRLLERVWD-YGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 232


>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 237

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                  DV  ++      G   L+
Sbjct: 2   LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVM--MPGIDGLQ 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++     Q  +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 60  VCRVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 119

Query: 122 SNNRAETGPI-----------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                                      R+    R          L R E  +LE L+ N 
Sbjct: 120 DGMAPVGAAPKAVAPELPQGRIEAAGLRMDIQARRAWRGTRELELTRTEFELLELLVRNA 179

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  + I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 180 GIVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPQLIHTVRGVGYVL 234


>gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  ++  N  +   +L  +   DV  ++  L   G   L
Sbjct: 3   ILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRML--PGRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L +++RA     P++ +S   S+   +    +G DD + KP    E+     V    R 
Sbjct: 61  SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R  +  G+   L  RE  +LEYLM N G  V +T +   ++
Sbjct: 121 AAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI++LR+K+        + + R  GYS+
Sbjct: 181 D-YHFDPQTNVIDVHIARLRQKIDKDFPTPLIHTVRGAGYSL 221


>gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 268

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++   +    +G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ I+     +  +  F+SG DD + KP    E+  RV A+ RR  
Sbjct: 65  CQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALLRRTD 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +          +         +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGTNAHHEILSYGPLTLVPERFEAIWFDRPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       ++G S+    +      +  S   D   ++  L   G    
Sbjct: 3   ILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVML--PGMDGF 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           E+ R +     QVP++ ++   +    +   D+G DD V KP    E +    A   R  
Sbjct: 61  EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      + + S   +         L R E  +L+ LM N G+ V++  +   ++G
Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D A+E N +++ I  LR+K+  +     + + R  GY
Sbjct: 181 -YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218


>gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus
           pyogenes SSI-1]
 gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR)
           [Streptococcus pyogenes SSI-1]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R ++      ++ ++   S+   +   D G DD + KP        R          
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K   ++     + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L      ++  ++  L   G    
Sbjct: 11  ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIML--PGMDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           E+  II+   +  +I ++    +   +   D G DD + KP   +E+LAR+   I     
Sbjct: 69  EVCSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFP 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G  +V     +   + +V  LP  +  +L +L+ N G  ++K+ I   ++G 
Sbjct: 129 ELSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E+N+VE +I  LR K+ +K   + + + R +GY +
Sbjct: 188 YDFNGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKM 226


>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQNIRDKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +           + R    + +   L  +E  I+E L  +  +  +K QI+  I
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227


>gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D A +     A   + G  ++  ++ +           DV  ++  L   G+  L
Sbjct: 3   ILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIML--PGKDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R   +  P+I ++    L   L+  + G DD + KP    E++AR+ A+ RR+ 
Sbjct: 61  AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+++    R      +   L  RE  +LEYLM + G+ + +TQI   ++G
Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+  I ++RKKL    G   ++S R +GY  
Sbjct: 181 -YDFNPTTNLVDVCIQRIRKKLERMGGASCIESVRGVGYCF 220


>gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 230

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++D        +G ++           L  +   D+  ++           
Sbjct: 4   ILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADSPDLILLDIG--MPEIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ R +R  S+VP+I +S        +   + G DD V KP   RE        +   V 
Sbjct: 62  EVCRRLRRESRVPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLRRVVP 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +          +R+  DG           L   E  +L  L    GK  ++  +
Sbjct: 122 PEPPVPEGPAPVLRNNRLRLDLDGVRAFWDEMEVVLTATEFCLLRTLADRPGKVFSRDAL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               Y   +  V +  V+SHI ++R K +   G  PV++   LGY +
Sbjct: 182 MDGTY-ATERYVADRTVDSHIRRVRAKFQAVGGA-PVETVHGLGYKL 226


>gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G+  +  +       +  S   DV  ++            
Sbjct: 5   LIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIM--MPNLDGFT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121
             R I+    VP+I +S        L  F+ G+DD V KP   +E++AR+     R   +
Sbjct: 63  ACREIKKIKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSERAKGM 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++    G + V   GR+  + GE   +  +E  +L +L+ ++ + +++  +   ++  +
Sbjct: 123 KHSVYSFGGLEVDITGRNLIIDGERINVTPKEFDLLVFLIQHKDQALSRDVLLDKVW-NY 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   +   V++HI  LR+ L      D + + R  GY  + N
Sbjct: 182 NYYGDYRTVDTHIKMLRQNLGPY--RDYIVTVRGTGYKFEIN 221


>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
 gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +   +      E    +    + +++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEK-NIALIILDVMMPKINGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R +R  S+VP+I ++        L  F+ GVD+ ++KP   +     + A +     
Sbjct: 65  DVCREVRETSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSGL 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G I++        V G    L  +E  +L+Y M N+G  +++ +I + +
Sbjct: 125 TAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNNV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   +   +++H+ KLR K+  K   + + +   +GY  
Sbjct: 185 W-NYDYFGDARTIDTHVKKLRAKIGEKG--EYIKTIWGVGYKF 224


>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL        + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLG--GKATCIVTVVRTGYKFE 225


>gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G         E    L S    D   ++       +    
Sbjct: 7   LIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVM--MPKQDGFA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           +   IR  S VP++ ++        +     G DD + KP    E++AR+       +R+
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++ R + G + +   GR   V GE   L  +E  +L +L  +RG   ++  +   ++G
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGLVFSRDDLLVKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKD--AARHIQTVWGIGYKFE 223


>gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
 gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       D G++    +  +           D+  ++  L   G   L 
Sbjct: 6   LIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLML--PGMDGLS 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREIL 109
           + R IR+    VP++ ++   +    +   + G DD + KP               R   
Sbjct: 64  VCREIRSGPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALFRRVDA 123

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              ++            +T  +R+    R   V  +   L  RE  +L +  ++ G+  +
Sbjct: 124 MSSSSGETSGPEELGELDTEGLRIDPTRRRVFVWEQEVELTAREFDLLWHFASHPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + Q+   ++G ++    E+ V +HI++LR K+       + +++   +GY  
Sbjct: 184 RVQLLDKVWG-YNHEGYEHTVNTHINRLRGKIEQDPARPEFIETVWGVGYRF 234


>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 236

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +   +S +       +    +  I+  L        
Sbjct: 5   LMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIML--PEMDGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR  +  +P++ IS   +    +     G DD + KP    E+ AR+ A  RR K
Sbjct: 63  TLCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYK 122

Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  +    I  F +        +   V  +   +  +E  +L  +  N  K  +K ++
Sbjct: 123 KVDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  I+   D     N V  HI +LR+K+ +       + +   +GY  
Sbjct: 183 YHHIWESMDVEGN-NTVTVHIKELREKIGDSSKNPTFIKTVWGVGYKF 229


>gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D    +   +G ++      E           D+  ++      G   +
Sbjct: 4   ILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLM--MPGLPGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE    +  V    R 
Sbjct: 62  EVCKALRQRSDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLRRGRA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++  +  E+G +R+  +  +  V+ E   L  +E  +LE L+ N G+ +++ Q+   ++
Sbjct: 122 EELVPDVLESGDVRMDVERHEVAVRDEPVRLALKEFELLELLLRNSGRVMSREQLIDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  D   +   ++ H+ +LR K+  +      + + R LGY  
Sbjct: 182 G-SDYVGDTKTLDVHVKRLRAKIELDPSHPTALVTVRGLGYKF 223


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLML--PSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+L        R + 
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELL-ARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional
           regulatory protein phoB [Deinococcus deserti VCD115]
 gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon
           transcriptional regulatory protein phoB [Deinococcus
           deserti VCD115]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A  G +G  +      +    L    R DV+ ++  L   G     
Sbjct: 5   LIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALL--PRADVAVMDWML--PGAAGPV 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  RA    +P++ ++     +  L   + GVDD V KP   REI         R   
Sbjct: 61  LAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREI-VARVRALLRRVG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +    +  + +    R   V G    L R E  +L  L  + G    + ++   ++G  
Sbjct: 120 VHQDVRSDSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWG-P 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           D    E VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 179 DFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRF 218


>gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264]
 gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +   +          +   D+  ++  L       +
Sbjct: 7   ILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIML--PKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E    IR   Q+P+I +S        +    SG +D + KP +  E++A      R   +
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y+  +V     E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            ++        +N V  HI+K+R+K+         + +   +GY 
Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
          Length = 246

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   V+          G  +    S +    L S+   D   ++  +    G  V+
Sbjct: 24  LMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAVV 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              R +   + +P+  +S   ++   +   ++G DD + KP    E++AR+         
Sbjct: 84  TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASH 141

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++    GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 142 TEQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  IS LR+KL        + + R +GY +
Sbjct: 202 G-YDFDVDTNVADVFISYLRRKLERDGVPRVIHTVRGIGYVL 242


>gi|94971194|ref|YP_593242.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553244|gb|ABF43168.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 237

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +   +E   + E    L  + ++    +   ++  G+   
Sbjct: 4   ILIVEDEEHLARGLQFNLQAEDHEVEVAGTGELALDLLLNEKQHFDVMVLDIMLPGKDGF 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
            + R +R A + +P++ ++     +  L  F++G DD + KP             +  R 
Sbjct: 64  TVARELRDAQNFIPILMLTARGRSEDILQGFEAGTDDYLPKPFELAILTARLDSLLRRRR 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +      V           +  D  +  V  +V  L   E ++L+YL+ + G+ V++  
Sbjct: 124 WSQKVEAPVEPEVLRFNGKFLDFDALELHVGDQVHNLTLMEAQLLQYLIRSAGRPVSRKS 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++GL +   +   +++ I +LR+ +  +      + + R +GY  +
Sbjct: 184 ILEEVWGLHE-DTDTRAIDNFIVRLRRYIEADPSHPKHLQTVRGIGYRFN 232


>gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
 gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
          Length = 238

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++   I     +G  ++   + +               ++  L         
Sbjct: 6   LVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDYSCVLLDVHLPM--LNGKT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARVA 113
           +   +R     P+I +S     Q+ ++ F+ G DD V KP   RE++          + +
Sbjct: 64  ILAELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQRTKRS 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             Y     + +      + +  +     V+     L  +E  +L +L  +  K   +T+I
Sbjct: 124 VFYTPELYTKDVLVFPGLIIDVNAHKVIVEDSEIFLTPKEFDLLLFLAKSPDKAFKRTEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221
             A++  +D   +   V++HI ++RKK+          + +   +GY  D
Sbjct: 184 LRAVWD-YDFYTDLRTVDTHIKRVRKKIDKISPRVAKMIITVWGIGYKFD 232


>gi|296116946|ref|ZP_06835548.1| two component response regulator PhoB [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976512|gb|EFG83288.1| two component response regulator PhoB [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 261

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G  +              S + D+  ++  L   G   +
Sbjct: 21  ILVAEDDEALSVLVTYNLEAAGYEVRAVADGLDALEQVGSWQPDLLVLDWML--PGLSGV 78

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---- 113
           +L R +R    A   +P++ ++   +   ++   D+G DD + KP     + ARV     
Sbjct: 79  DLCRRLRARGGAMCDMPVLMLTARTAESDSVHALDTGADDYLTKPCGMEALNARVRALLR 138

Query: 114 --------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                      +    +        + +          G V      E R+LE+ M N  
Sbjct: 139 RSVLNAGAGGVQAQADATAVLRFVDVVLDPVSHRVTRAGRVLAPGPTEYRLLEFFMRNPN 198

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++  +  +++      VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 199 RVFSREDLLRSVW-ERGVHVESRTVDVHIRRLRRILNEGDLPDLIRTVRASGYALD 253


>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  +              +   D+  ++  L       +
Sbjct: 4   ILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLML--PKLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            +   IR  S V +I ++     +  L  +++G DD + KP   + ++A++       + 
Sbjct: 62  TVCSKIREISDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIKE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +   +   + +    R+  + GE   L  +E  ++ YL  N+G  +++  I   ++
Sbjct: 122 DEKEDGVLQFDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD   +   V++++ +LR+KL++K     + + R  GY  +
Sbjct: 182 G-FDYEGDIRTVDTNVKRLRQKLKDK--ATVISTVRGSGYKFE 221


>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
 gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
          Length = 236

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +    + +    G  +    S     +       D   ++  L   G    
Sbjct: 10  ILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLML--PGMTGE 67

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +   IR     ++P++ +S   S+Q  +     G DD + KP    E++ARV A  RR 
Sbjct: 68  AVLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRRY 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQ 172
                  E               Q     +          E  IL  L+ N  K  ++  
Sbjct: 128 TKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSREH 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++  ++       E+N V  H+S LRKK+ +       + +   +G+ ++
Sbjct: 188 LYEQVW-KGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236


>gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 223

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 229

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++D                      +   +    D+  ++  L G  G  +
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R  +    +P+I ++        +   ++GVDD V KP   RE+    R      R
Sbjct: 65  ARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +R+              P+   E R+L + M +  +   +TQ+   ++
Sbjct: 125 EDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++            +           +  +A+ D+  ++      GE  L
Sbjct: 6   ILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIM--MPGEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R  +A    P+I ++        +   + G DD V KP + RE++AR+ A+ RR   
Sbjct: 64  SLLREWQATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRAGG 123

Query: 122 SNNRAETGPIRVFSD---------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                       +S                     PL   E  +L  L+ + G+ +++ Q
Sbjct: 124 EGANPPPDACEGYSFAGFHLDIGRRHLTGPDHPSIPLTGGEFALLHVLLDSAGRVLSRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A  G      +   +++ IS++RKK+  +      + + R  GY +
Sbjct: 184 LLDATQGREAHLFD-RSIDNQISRIRKKIELDPKQPQIIKTVRNGGYVL 231


>gi|329935904|ref|ZP_08285706.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304595|gb|EGG48471.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 239

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D              +G  ++             ++R D+  ++          L
Sbjct: 5   ILVAEDDVKQAQLIRIYLEREGHDIQVVADGRSAIDRARASRPDLLVLDVM--MPHVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++RA S+VP++ ++   + +  L   D G DD + KP   RE+ ARV A+ RR + 
Sbjct: 63  DVCRVLRAESRVPILLLTARSTEEDLLLGLDLGADDYLTKPYSPRELTARVRALLRRARP 122

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +              V +   +    GE  PL  +E  IL  L A  G+   + QI   +
Sbjct: 123 AEGERPPVLTVGDLVVDTARFEVRAAGEPVPLTGKEFAILALLAAEPGRVFTRAQIIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G FD+ V E  V++H+  LR+KL   + G   V++    GY +
Sbjct: 183 FG-FDQQVLERTVDAHVMNLRRKLDGGRPGTRHVETVYGRGYRL 225


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     + +    +    + D+  ++           
Sbjct: 4   ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIM--MPDLDGK 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R IR  S  P+I +S        +D    G DD + KP +  E++        R   
Sbjct: 62  EVLRKIREKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + SN       +++  +            L   E +++ + M NR K   K Q++
Sbjct: 122 FNNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G      +E ++  +ISKLR+K+ +     + + + R LGY  
Sbjct: 182 EEVWGQC-YLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIF 227


>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
 gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G  ++     E  E     +  D+  ++  L    +  +
Sbjct: 3   ILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIML--PKKDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ ++   S+   +   DSG DD + KP    E+ ARV ++ RR  
Sbjct: 61  TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N          +   R+  +  +   L  +E  ILEY M N    V +T +   ++ 
Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D     NV++ +I +LRKK+ +K G   +++ R  GY +
Sbjct: 181 I-DFEGNSNVIDVYIRRLRKKIGDKEG-KILETVRGAGYRL 219


>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 297

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     AL   +G  +    +    + +    R D+  ++  L   GE  L
Sbjct: 67  ILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLML--PGEDGL 124

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+    P++ ++        +   + G DD V+KP   RE+LARV A+ RR + 
Sbjct: 125 SICRRMRSEGAFPILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLRRTQS 184

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +A +               +  +  G    L   E  +L   +    + +++ QI  
Sbjct: 185 QPFQAASRRYSFDRFVIDLDARQLTDEDGAPATLTSAEFDLLTCFVLRPRRVLSRDQILD 244

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G       +  V+  +S+LRKKL +   G   + + R  GY +
Sbjct: 245 WTHGRT-ADPLDRTVDILVSRLRKKLESLSPGNTLISTVRNGGYLL 289


>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
 gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAETGPIR---------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                        + ++G +    G+   L   E R+L    +  G  
Sbjct: 126 SGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTV 185

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +D+ R  GY +
Sbjct: 186 LSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIDTVRGFGYKL 233


>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 226

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D G      ++         +   D+  ++  L   G+  L
Sbjct: 6   ILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP+I ++        +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 64  QVCKEVRTISQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRSSL 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 T    +  +      QG+   L   E  IL+ L  + G+  +++ +  +IY   
Sbjct: 124 RQENHSTEDWHMDEERYQVRYQGKTVNLSMVEFAILKLLSTSPGRIYSRSHLIGSIY-PD 182

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           +  V +  V+SHI KLR KL       + + S   +GY  ++
Sbjct: 183 NRVVSDRTVDSHIKKLRHKLAEELTSKELIYSVYGVGYKFEF 224


>gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
 gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    +   +      E            +  ++  +       +
Sbjct: 3   LLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMI--PKISGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS VP+I +S   +          G DD + KP    E+LAR+ A  RR   
Sbjct: 61  EVMQHIRTHSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRSTQ 120

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   E   + +            E  G    L  +E  IL+ L+ N  K   K Q++S 
Sbjct: 121 YSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYSL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+       +EN V  HIS+LR K+         + +   +GY +
Sbjct: 181 IW-NDAYLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKL 224


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 50  ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 107

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 108 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 167

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 168 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 227

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 228 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 274


>gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 265

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +   +    +        +      +      DV  ++  L   G   LE
Sbjct: 35  LVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGL--PGIDGLE 92

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR ++ 
Sbjct: 93  VCRQLRTFSDAYVVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRIQ 152

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +    R+  +  E   L R E  ILE L A  G  +++ 
Sbjct: 153 QSAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSRR 212

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 213 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGYRM 261


>gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 219

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++         +G  +      E       + + D+  ++           
Sbjct: 5   ILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIM--MPKLDGW 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR     VP+I ++        L  +    D+ V KP+  + ++A+V A+ RR  
Sbjct: 63  DVCREIRSERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRRNN 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       I          + GE+  L  RE  +L Y + N+G  +++ +I ++++G 
Sbjct: 123 NDSIINMGKLIIND-SSHVVTLDGEILELSPREYEMLLYFVINKGIALSREKIITSLWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   V+S I ++RKKL    G + +++ R +GY  + 
Sbjct: 181 YDYEGDRRAVDSQIKRIRKKL----GGEYIETVRGVGYKFEV 218


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      S+   +++ +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTN-PEIALMILDIMMPQMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S++P++ +S   S    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  EVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +V  L   E  IL  L ++  +  +  +IF 
Sbjct: 122 EVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 234

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-------AREDVSAIEAFLI 54
            +L++D    ++        DG  +           L             D+  ++  L 
Sbjct: 4   ILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDLML- 62

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA- 113
                  E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV  
Sbjct: 63  -PRLSGTEVCRRIRRSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHA 121

Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                R  + +    E G + +  +  +  V GE   +P RE  +LE  + N  + + + 
Sbjct: 122 VLRRTREEEPAEPVLEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           QI   ++G      +   ++ H+ ++R K+         + + R LGY +
Sbjct: 182 QIIDRVWGAG-YVGDTKTLDVHVKRIRAKIEREPSDPTLLVTVRGLGYKL 230


>gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 223

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLEL 63
           ++D A +++   A    +G +++     E   ++      DV  I+  L    G ++++ 
Sbjct: 2   VEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIKA 61

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKVS 122
            R      + P++ ++   S Q  ++    G DD + KP H  E+LARV A+  R    S
Sbjct: 62  LR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWS 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY   D
Sbjct: 120 KPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY-QQD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 179 FDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 216


>gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
 gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +    +              +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
            E+ R  +      +  ++      + +  FD+G DD + KPI  +  +++V      + 
Sbjct: 68  CEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRRLK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +  + G + +  +      +GE   LPR+E  +L  L +   K   +  I   
Sbjct: 128 NQEGSGEDILKVGKLVINREEYKVVNKGEELTLPRKEFELLALLASKPDKVFKREVILDK 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V    ++ HI KLR+K+          + + +GY  
Sbjct: 188 VWGQ-EVVVGGRTIDVHIRKLREKIGES----HFKTVKGVGYKF 226


>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+R   +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D  ++++        +G  +      E  +            ++  L        E+
Sbjct: 9   VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLML--PKLSGEEV 66

Query: 64  PRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            R IR+  +    +I ++   S ++ ++    G DD V KP    E++ARV A+ RR   
Sbjct: 67  CRWIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQ 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +        + G+   L + E  +L Y M N    +++ Q+   I+   
Sbjct: 127 FCQKISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPHT 186

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           D  + +  +++HI KLR+K+ +       + + R +GY  
Sbjct: 187 DVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRF 226


>gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 241

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  ++     E      + +  DV  ++  L   G   LE
Sbjct: 22  LVVEDDETIARAVRHRLAAEGFDVQVVGDGEGALAAYARSGPDVVVLDRLL--PGLDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           + R ++A   VP++ ++        L     G DD + KP   RE++ARV          
Sbjct: 80  VCRRMQAARPVPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVERA 139

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +L V++     G + + +  R   V+G    L R E  +L  L    G+   + ++ + 
Sbjct: 140 SQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLLND 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G F EA     V+SH+  LR+KL    G   V +   +GY++
Sbjct: 200 IWG-FSEAAATRTVDSHVRALRRKL----GPGVVRTVHGVGYAL 238


>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                ++ +   +  I V    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 SAVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|297201439|ref|ZP_06918836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713846|gb|EDY57880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 96/232 (41%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + + ++G +    G+   L   E R+L    +  G  +
Sbjct: 126 GGTDRGEVSADAAAGGVLTFGELEIDTEGMEVRRAGQPVALTPTEMRLLLEFSSAPGTVL 185

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 SRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232


>gi|114046179|ref|YP_736729.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113887621|gb|ABI41672.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 253

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +         +    SL     L  + R D+  ++  L       L
Sbjct: 23  ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRML--PDGDGL 80

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            L + +R    Q+P++ ++       T+   +SG DD + KP    E+ AR       + 
Sbjct: 81  LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   +R+  D R+         L  +E  +L +L  +  +  ++TQ+  A+
Sbjct: 141 SAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G +     E+ V SHI++LR KL +     + V +   +GY  
Sbjct: 201 WG-YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243


>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 225

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       D    ++  +  +  + L  S   D+  ++  L       +
Sbjct: 3   ILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVML--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +R+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A + R  
Sbjct: 61  TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   +R+     +   +  +  L  +E  +LE+ + +  +  ++ QI   ++ 
Sbjct: 121 TTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 181 -FERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRL 221


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  +           +  + + D+  ++      G     
Sbjct: 11  LVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVM--MPGMDGFG 68

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           L R +RA     P + +S   S++  ++    G DD V KP    E++AR       + +
Sbjct: 69  LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R     + +  +  +    GE+  L   E  +L Y M N G  ++K +I   
Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 189 VWS-YDFGGDVNVVESYVSYLRRKV-DTGPKRLIHTLRGVGYVM 230


>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+ R  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +  S++     E       +   D+  ++           
Sbjct: 4   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLM--MPKFSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ +IIR  S +P+I ++        ++  D G DD + KP    E+ AR+      +  
Sbjct: 62  EVCKIIRKTSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      +++           +   L + E  +  YL+ N+   V++ +I + ++G
Sbjct: 122 FTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +      + + R  GY +
Sbjct: 182 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 220


>gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 245

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 30  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 88  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL +    + + + R +GY ++ 
Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 243


>gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
 gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
          Length = 258

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   V           G    G         +      D+  ++  +    G  V
Sbjct: 34  ILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGLDV 93

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            +  +       +P++ ++        +   + G DD + KP   R     I + +    
Sbjct: 94  CKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRRRL 153

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++    +   IR+    +    + +   L   E R+L  L+   G   ++ Q+   
Sbjct: 154 EDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQLLKE 213

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D+ V+   +++HI +LR KL        + + R +GY  
Sbjct: 214 VWG-YDKTVDTRTIDTHIRRLRDKLGRAS--QYLRTVRGIGYRF 254


>gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1044]
          Length = 233

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 13  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 71  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 131 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 190 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 228


>gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         + G S +     +      +S   D+  ++  L       +
Sbjct: 3   ILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIML--PKIDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L ++IR    Q P++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           + ++       G++  L  +E  ILEYL  N+G+ + ++QI   ++ 
Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ +I  LR+K+ +      + + R +GY +
Sbjct: 180 NYDFEGTSNIVDVYIRYLRRKIDDGFPEKLIYTIRGVGYML 220


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A+       ++  N  +       S+  D+  ++  L       +
Sbjct: 3   ILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPL--LDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L   +R+H+   P++ ++   + Q  +   D+G DD + KP+   E+ AR+ A + R  
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +++      + + +   D    G+   +  +E  +LE LM +R +  +  +I   ++ 
Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            FD+    N V +HI  LR+KL+    G + +++   LGY ++ N
Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +      L    G+                S+  D+  ++  +    G ++ 
Sbjct: 499 MIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNGIELC 558

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           ++ R       +P+I ++     Q     F +G DD + KP 
Sbjct: 559 QIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPF 600


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  N          +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRQIRQEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G F
Sbjct: 121 QKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++       + G  ++ F               D+  ++  L  K    
Sbjct: 1   MIYVVEDDKSIRNLLEYALREKGYEMKSFEDGSEIVREVKDKPCDLLILDIMLPEK--DG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRL 119
           + + + IR  S +P+I ++        +   D G DD + KP      +    A + R  
Sbjct: 59  ISILKEIRQFSNLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRRSN 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +      +R+ +  R  +V+GE   L  +E  +L   ++N G  +++      I+G
Sbjct: 119 KKDTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+       +++ R LGY  
Sbjct: 179 -YDYEGETRTVDVHIASLRAKLKESG--KYIETVRNLGYRF 216


>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
 gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
 gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 240

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +    +  ++G              +    + D+  ++  L   G    
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K 
Sbjct: 62  EVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKP 121

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          + N  E GPI +          G+   L   E  +L  L A  G+
Sbjct: 122 AAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++++ +   ++G ++ + +  +V  H+ +LR K+ +       V + R +GY  
Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + L    G + +   S     +        +  ++  L   G    
Sbjct: 6   ILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLML--PGMSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ + +R  S   +I +S      T +    +G DD + KP ++      I A +     
Sbjct: 64  EVLKSLRQTSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRRNSG 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S        + +     +  ++G+   L +RE +ILE LM N  +  +K  I+  +
Sbjct: 124 NTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSKNVIYETV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +       E+N +  HIS LR+KL         + +   +G+ +
Sbjct: 184 W-EDLFLGEDNAINVHISNLRQKLAKIDPDEAYIQTVWGIGFKM 226


>gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +       +      D+  ++  L       +
Sbjct: 13  ILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVML--PSLNGM 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I ++    +   +   D G  D + KP    E+LAR+  +++    
Sbjct: 71  EVLRRIRQVSSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +                 +  +         L ++E  +L++LM N+   + + QI   +
Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  LR K+  +     + + R +GY I
Sbjct: 191 WG-YDYLGDTNVVDVYIRYLRNKIDQRFEDKLIYTVRGMGYQI 232


>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++     +    G +++     E   +L  +   D   ++  L       + 
Sbjct: 4   LIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGL--PKLDGVT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R   A    P++ ++        +  FD+G DD + KP H  E+LAR+ A   R   
Sbjct: 62  VLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++    G + + + G    +  ++  L   E R+L YLM +R + +++T++   IY  
Sbjct: 122 HSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G + +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GSNRIETVRGLGYRL 216


>gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 233

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A     G  +           L  +    +  ++  L        
Sbjct: 7   ILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLML--PDIMGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R++RA S+VP+I ++        +     G DD + KP   R ++A+  A+ RR++ 
Sbjct: 65  EICRMVRAVSRVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRRVES 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +                 D +  G+   L   E +IL  +     +   + Q+ + 
Sbjct: 125 DKLISVPVSYNQGSLVIDFQNGDVKAGGQDAGLTPTEYKILATMAKAPNRTFTREQLITY 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                +    +  ++++I  +R K+         + +   +GY  
Sbjct: 185 ALD-DNFDGYDRSIDTYIKSIRSKIEEDRKNPVFIVTVHGIGYRF 228


>gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 230

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + +      ++   D+  ++  L        
Sbjct: 6   ILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGL--PDMDGK 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  S+ P++ +S        +  FD G DD VNKP    E+ AR+        +
Sbjct: 64  DVIRELRGWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAAQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   ++G + V        + G    L  +E  +L  L+ N G+ +   Q+ +A++
Sbjct: 124 QASEQTHLKSGALEVDVLAHTVTLNGAAVKLTPKEFDLLAILVRNAGRLLTHRQLLAAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G      +   +   + +LR+KL+      + + ++  +GY +
Sbjct: 184 GAAHTE-DLQYLRVFVGQLRQKLKASPDAPEFIVTEPGIGYRL 225


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD   + +       ++G  ++               + D+  ++  L    G  +
Sbjct: 4   ILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISGIDL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R      Q+P+I ++     +  L+  + G DD + KP   +E+LAR+ ++ RR K
Sbjct: 64  LKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRYK 123

Query: 121 VSNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++N                       G+   L  +E +IL+ L+ N+G  + +T +   
Sbjct: 124 YTSNEKIEVLKADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D   E   ++ HI  LRKK+ +      +++ R +GY I
Sbjct: 184 IWG-YDYYGETRTLDVHIRHLRKKIGDN-DSKLIETVRGVGYKI 225


>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
 gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
          Length = 235

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                         L   E R+L + M +  +  ++TQ+ 
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++            +   +         +    D+  ++           
Sbjct: 5   ILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVM--MPNLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+  IIR  S +P+I ++     Q  +  FD G+DD + KP      + RV A       
Sbjct: 63  EVANIIRNQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++N      I V  D     V      L  +E  IL+ L+ N+ K + +  I   ++G
Sbjct: 123 ERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   E  ++++HI  +RKKL        + + + +GY ID
Sbjct: 183 -YEPYGETRIIDTHIKNIRKKL----NTPYIKTVKGIGYKID 219


>gi|312891216|ref|ZP_07750737.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296295|gb|EFQ73443.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 229

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   ++         +G  +      +  E +      D+  ++  L   G++  
Sbjct: 7   IALVEDDENLRFLVAERLELEGYKVLEAEDGDKAEKMIMEEMPDIVLLDWML--PGKQGS 64

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   IR       +I ++        ++ +  GV D + KP +   ++A +    +   
Sbjct: 65  EVCTSIRDKGFDKLVIMMTAKAQDVDKIEAYQFGVSDYITKPFNMDVLVAMIDNKIKFTL 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   +   +    +       G    L   E RIL Y + N+ K + + ++   ++
Sbjct: 125 NNEKSESYKFANMEHHPNTHTLLRDGRKIELTILENRILLYFLKNKNKVINREELMMEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G ++  V    ++ HI +LRKK+ N       + + R +GY  
Sbjct: 185 G-YNADVNTRTLDMHIVRLRKKIENNPDSPQYLQTVRGIGYKF 226


>gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
 gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
          Length = 229

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++   S E           D+  ++  L   G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|226315467|ref|YP_002775363.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098417|dbj|BAH46859.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 237

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G   +    + +    L +    D+  ++  L    +  
Sbjct: 6   ILIVDDEKSIIQLLETVLKKEGFRHIYTAGTAQEALRLLAKNEVDIIILDVML--PDQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113
            +L   IR  S   +I ++   S    L  F  G DD V KP +  EI+AR         
Sbjct: 64  FDLCPQIREISSAYIIYLTARASDLDVLSGFAIGGDDYVTKPFNPLEIVARTKAGLRRGV 123

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  + +  R + G   +     +  V GE  P P +  ++L YL  N     +K Q
Sbjct: 124 LMPVQHAEETRRRYDFGGFVLDEYEGELLVGGEAVPCPAQAYQLLLYLCKNPNMVFSKAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ A++G+ D   ++N V  HI K+R+++  +      + + R LGY +
Sbjct: 184 LYEAVWGI-DGMGDDNTVMVHIHKIRERIESDLGAPRYLVTVRGLGYKL 231


>gi|226325687|ref|ZP_03801205.1| hypothetical protein COPCOM_03500 [Coprococcus comes ATCC 27758]
 gi|225205811|gb|EEG88165.1| hypothetical protein COPCOM_03500 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       S      L    +   S I   L+  G    
Sbjct: 10  ILIVEDDTDINNLLYTALQKAGYETVQAFSGTEARMLFQMDKAGFSLILLDLMLPGISGE 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I ++    L   +    SG DD + KP   +E+LAR+    R ++ 
Sbjct: 70  EVLAQIRKQGNTPVIVLTAKDGLDEKIGLLTSGADDYITKPFEIQEVLARIQVQLRHMQQ 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      +  D    EV+        + ++E  ILE L+ +  +  +K +IF   +
Sbjct: 130 EPEHKSVSYKNLELDRERFEVRIAGVLLPKITKQEFAILELLLEHPKQVFSKEEIFEYAW 189

Query: 179 GLFDEAVEENVVESHISKLR-KKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +R KK++     + +D+   +GY +
Sbjct: 190 DEH-YMGETKTLDVHISNIRKKKIKAVTQEEYIDTVWGIGYRL 231


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G ++E                 D+  ++  L   G   +
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLML--PGLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQK 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         +++  + R      E+  L  +E  +L   M N  + + +  +   +
Sbjct: 122 EESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL      + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHGVDKEEYIQTVRGAGYVM 223


>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STINVSTEDTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRTGYKFE 225


>gi|167632633|ref|ZP_02390960.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170685451|ref|ZP_02876675.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254685422|ref|ZP_05149282.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254742948|ref|ZP_05200633.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167532931|gb|EDR95567.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170670811|gb|EDT21550.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 215

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V K  H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKTFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
 gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD    ++   +   + G  ++   +     ++      D+  ++           
Sbjct: 3   ILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVM--MPELDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + + A   +P+I ++   +++  +   + G DD + KP    E+LAR+    RR   
Sbjct: 61  EVMKTLDAQ-NIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGAN 119

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +++    R  E  G    L  +E  +L+  M N G+ +++T I S ++ 
Sbjct: 120 VKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVWD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  + +LR+K+        + +   +GY  +
Sbjct: 180 M-NFDSDTNVVDVAVRRLRQKVDEPFATPLIHTVHGVGYRCE 220


>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G      +        Q     D+  ++  L       L
Sbjct: 5   ILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGL--PEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S+VP++ ++        +   + G DD + KP   R     I A +     
Sbjct: 63  EVCREIRKISEVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKRSVS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K S+     G + + ++            L   E R+L  LM      + + Q+  A+
Sbjct: 123 APKPSDAAVIHGALHLDAERHQCTFNDTSVSLTGSEFRLLATLMIRPDHVLTRAQLVDAL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG ++  V +  ++SHI  +R KL      + + +   +G  +
Sbjct: 183 YG-YNIHVSDRTIDSHIRNIRAKLSQAGCVEGIVTVHGVGLRM 224


>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 236

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G   +   + E      +  R D+  ++  L   G   
Sbjct: 5   LLLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLML--PGIDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R IR +     +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FDVCRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILK 122

Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +  + + +         V     + ++ G+   L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQSAQHQEVLSAAGLDVDIVRHEVKLDGKEIVLTLMEFKLLVALLKRKGQAQSRDML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            S ++   D  +    +++HI++LR+KL        + + R LGY  + 
Sbjct: 183 LSDVW-EVDRFINTRTIDTHITRLREKLGVTGS--MIKTVRGLGYKFEE 228


>gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 11/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++ +      + E       S + DV  ++  L       L+
Sbjct: 4   LIVDDDLDILNIVRTACENESMQTSTAANAEELWSSLRSEKPDVILLDIML--PDANGLD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
           L + IR  +S++P+I ++   S    +   + G DD V KP + R     +  V      
Sbjct: 62  LVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRTEI 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++   G   V          G+   L RRE  +L+ L  N G+   + ++   ++
Sbjct: 122 SGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D   +   V+ HISKLR+K+        + + R +GY  
Sbjct: 182 GM-DFFGDFRTVDVHISKLREKVGE----GFIKTVRGVGYKF 218


>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR++AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + D    L   +G       S      L       +  ++  L   G    
Sbjct: 4   ILIIEDDAGINDMLRVLLRQNGYDTISAYSGTEGL-LAHGEEVSLILLDLML--PGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            + + ++    VP+I  S    +   +D F  G DD V KP H+ E    ++        
Sbjct: 61  AVIKGLKEKKNVPVIVTSAIHDVSKKVDLFALGADDYVTKPFHNEELLARISARLRNVLP 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +      I +          G    L + E  +LE  M +  +   K++I+  ++
Sbjct: 121 EQTKGDVLTYKDIILNKSEHTVSCHGTAVELSKHEFALLELFMESPKRTCTKSRIYDTVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++ + ++N +  HISKLRKKL+      D +++   +GY +
Sbjct: 181 D-YENSADDNTLNVHISKLRKKLKECSPDEDYIETVWGIGYRL 222


>gi|264677272|ref|YP_003277178.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262207784|gb|ACY31882.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G ++E     E  ++L      D + ++  L       L
Sbjct: 3   ILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGL--PVRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  RA  + +P++ ++   +    +   D+G DD + KP H  E+LAR+ A+ RRL 
Sbjct: 61  SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I + S      V+G+   L   E ++L  LM   G  V++T++   IY 
Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKL----PPGSIETVRGLGYRL 216


>gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
 gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
          Length = 238

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 12  ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 70  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 129

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                + +     +  + GE   L   E  IL  L+++ G  V+  +
Sbjct: 130 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 190 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 238


>gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 233

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 7/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +        +G  +    + E           D+  ++  L G  G +V
Sbjct: 6   ILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               + +     +P+I +S    ++  +   + G  D + KP   RE+ +RV A+ RR+ 
Sbjct: 66  CHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRIN 125

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +         +   G    +  E   L  +E  +L YL+   GK  ++ ++ + 
Sbjct: 126 QNPYHKKETLRYGKLTMDLKGYRVLINKEEIDLTNKEFNLLAYLIDKLGKVCSRDELLAN 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           ++G ++       V+ HI  LRKK     +    + + + +GY +  N
Sbjct: 186 VWG-YENVSGIRTVDVHIRMLRKKFTQYNIESLLIKTVQGVGYKLVKN 232


>gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH
           DNA-binding domain) [Clostridium ljungdahlii DSM 13528]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D   A    +G  +    +      L +     +  ++  L        
Sbjct: 4   ILVIEDEIKVSDVIKAYLEREGYKVYCATTGLEGIRLFNKIEFKLVILDLML--PDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S V +  ++   +L   L   + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCSTIRRISNVHIFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSS 121

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +             +  D R  +++GE   +   E  IL  L  NRG+ +++ Q+   ++
Sbjct: 122 AEEPEIISRDGLLVINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G+ D    +  ++ HI  +RKK+         + +   LGY  
Sbjct: 182 GI-DFEGSDRTIDVHIKNIRKKIERDTRFPKYIITVIKLGYKF 223


>gi|285017655|ref|YP_003375366.1| two-component system regulatory protein, ompr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472873|emb|CBA15378.1| probable two-component system regulatory protein, ompr family
           [Xanthomonas albilineans]
          Length = 236

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +E   ++     L +  + D+  ++      GE  L
Sbjct: 5   ILVVDDDPDLRRLISEFLSEHGYQVESAETVAQMRQLMAERQPDLIVLDVM--MPGEDGL 62

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R + +    P +I +S   S    +   + G DD + KP + RE+LARV A+ RR +
Sbjct: 63  SAARQLASERGAPAVIMLSALGSDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +    E         G           +  G    L   E  +L   + +  + +++ Q
Sbjct: 123 AATLPPEARGNVYEFAGWRLDVIRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 183 LLDYARGR-DTEVYDRAIDSQISRLRRKINERVQTELIRTVRNEGYML 229


>gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
 gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
          Length = 240

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G ++    + +  +   +    D+  ++  L   G+   
Sbjct: 7   ILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIML--PGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L + +R  S VP+I ++        +   + G DD + KP   R+            + 
Sbjct: 65  TLCKYVRQDSSVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRRTQQ 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K    R     +   +   +  V G+   +   +  +L   + +    + +  
Sbjct: 125 LQETTLSKPKAIRFAQWRLDPVAQRLNHLVTGQEVEMTSSDFALLMLFIESPNTLLDRNA 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           I +A  G  D   +E  ++  +S+LR++L++       + + R  GY  
Sbjct: 185 ISNATRGR-DAQPQERGIDVQVSRLRQRLKDNGRQSTIIKTVRGNGYMF 232


>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVML--PDVSGTE 62

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           + R I++      VP++ ++        +  F+ G DD V KP   RE++ R+       
Sbjct: 63  VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRA 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       GPIRV  +     V G    L   E ++L  LM+  G+  ++ Q+   
Sbjct: 123 GARPSERPPESVGPIRVDVESHRVYVDGAEVVLTPLEFKLLTTLMSRLGRVQSRDQLLED 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++      VE   V++H+ +LR+KL    G D +++ R +GY +
Sbjct: 183 VW-EMSAEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 223


>gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +   +          +   D+  ++  L       +
Sbjct: 7   ILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIML--PKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E    IR   Q+P+I +S        +    SG +D + KP +  E++A      R   +
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y+  +V     E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            ++        +N V  HI+K+R+K+         + +   +GY 
Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++            ++           +  S + D++ +   ++       +
Sbjct: 7   LVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTK-DIALVILDVMMPKMDGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120
           + R IR  S VP+I ++     +  L  F+ GVD+ +                       
Sbjct: 66  VCREIRGVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRRSNAL 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G I +       +  G+   L  +E  +L Y M N+G  +++ +I ++++  
Sbjct: 126 APDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNSVW-N 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR KL  +   D + +   +GY  + 
Sbjct: 185 YDYFGDARTIDTHVKKLRSKLGKQG--DYIKTIWGMGYKFEV 224


>gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 233

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   N+      +  + +  +      L+  G    
Sbjct: 6   ILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLL--LLDLMLPGMDGF 63

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           ++ + I+  S++    +I ++        +   + G DD + KP   R     + A +  
Sbjct: 64  DVCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++   +  ++V  +  +  V      L  +E  +L+ L+ N+G+ + +  + 
Sbjct: 124 TSSFNEAEDDVYNSENLKVDFERHEVYVNDRKVDLTLKEFELLQILIKNKGRILKRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPRFIETIRGVGYRFN 230


>gi|299822697|ref|ZP_07054583.1| two component response regulator [Listeria grayi DSM 20601]
 gi|299816226|gb|EFI83464.1| two component response regulator [Listeria grayi DSM 20601]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G+  +    +L        + + D+  ++  ++    + 
Sbjct: 4   ILIVDDEKELSLLLKRILEKEGLSDISIAQNLAEGYTKFEAEKPDLVLLD--IMLPDGEG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + IR  S VP++ +S        L     G DD + KP   +E+  RV A  RR  
Sbjct: 62  YDLCKKIRETSIVPILFMSAKGEEIDKLLGLAIGGDDYITKPFSPKEVAYRVKAHLRRAN 121

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    + GP +   +  +    GE   L  +E  ++   M N  + ++K  +F  +
Sbjct: 122 FTVPQQKALQVGPFQFNDNETELRKAGEPLELTAKEIALMRVFMHNPNQIISKETLFERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +        +N +  HI +LR+K+       + + + + LGY  
Sbjct: 182 W-QETFLGADNTLMVHIRRLREKIEAQPSKPEYLITVKGLGYKF 224


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++      +    + S+   D+  ++          L
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIM--MPKRNGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E        +     
Sbjct: 80  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 139

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +         +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 140 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           F  ++   D       V  HIS LR KL     G   + +   +GY I+ 
Sbjct: 200 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 248


>gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G        G  +           +       ++ ++          +
Sbjct: 6   ILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEEIHLAIVDVM--MPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 64  RMTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E               D  +  V G    +   E +IL  L  N G+  +  +I+
Sbjct: 124 FMEKLEPKENVHVIGGLEINEDRVEVLVDGNPVKMTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++   ++A+  + +  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 ERVW--QEKAISTDTIMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEK 230


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G  +                R D+  ++  L        
Sbjct: 11  LLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVML--PDMDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   +R       +                   DD V KP    E    +  V    R 
Sbjct: 69  AVAGRLREMGGQMPVVFLTARDATDDKVAGLRVADDYVTKPFSLEEVLARIRAVLRRTRG 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R + G + +  +       G    L   E ++L Y M N G+ ++K QI   ++
Sbjct: 129 DLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPTEFKLLHYFMVNTGRVLSKAQILDHVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  VVES++S LR+K+ +      + + R +GY +
Sbjct: 189 -NYDFGGDAGVVESYVSYLRRKV-DVSEPRLIHTLRGVGYVL 228


>gi|229551853|ref|ZP_04440578.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314797|gb|EEN80770.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 248

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   +      E        A +    I   L       +
Sbjct: 8   LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + IR  S+  PLI ++   +    +   + G DD V KP     ++AR+ A++RR  
Sbjct: 68  QVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 127

Query: 119 --------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                              +                    ++  L  +E  +L  L  + 
Sbjct: 128 VGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKSP 187

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 188 KQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 242


>gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 227

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +               E  +S +    L          ++  L       +
Sbjct: 4   ILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLML--PDGDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR HS VP++ ++        L   + G DD + KP   RE++ARV         
Sbjct: 62  EVCKAIRQHSNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRANP 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                          +          +   L   E  +L  L  + G+  ++ Q+   IY
Sbjct: 122 EPTEQEHELQLDEERYEAILKQPQGQQRIALTAIEFALLATLSRHPGRIWSRDQLMDEIY 181

Query: 179 GLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
                 V +  ++SHI KLR+KL   ++   D + S   +GY ++
Sbjct: 182 -KDHRVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +E   +         S    +  ++  L        
Sbjct: 4   ILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLML--PDMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   +    +     GVDD V KP    E++ARV A   R + 
Sbjct: 62  EICRQIREKKDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V  E      +E  IL +L +N  K  +K ++F
Sbjct: 122 LVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFTNKEFDILCFLASNPNKVFSKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + D   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SKIWNM-DSIGDIATVTVHIKKIREKIEFDTSNPQYIETVWGVGYRF 227


>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD A +++         G       + +    +    R D+  ++      G   +E
Sbjct: 7   LIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWM--MPGGSGIE 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++  S    +P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          +    +   +  +   +   E R+L++LM ++ +  ++ Q+   +
Sbjct: 125 TPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAYSRAQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK + N      + + R  GY  
Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKAIGN-THDSLIQTVRGTGYRF 225


>gi|317508033|ref|ZP_07965722.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316253672|gb|EFV13053.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G      +            R D+  ++  L   G   +
Sbjct: 8   ILVVDDDVALAEMLTIVLRGEGFDPVVVSDGSKVLPAVRELRPDLVLLDVML--PGLNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR +V
Sbjct: 66  DVCRQVRAESGVPIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +         + +           ++  L   E  +L  L     +   +  +   ++G 
Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRADQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224


>gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J1-208]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R  +
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 TSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 237

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++   +               +  ++  L   G   LE
Sbjct: 15  LVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLML--PGFDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
           + R IR  S   ++ +S        +    +G DD V KP   RE++ARV          
Sbjct: 73  VCRRIRTFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRAS 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +    R   V      L   E  +L  L        ++  I ++++
Sbjct: 133 SMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           G      ++++V+ H+  LR+KL +       + + R +GYS+
Sbjct: 193 GSP-WFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSL 234


>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
 gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
          Length = 242

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S              +  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 74  ATKRIVADRPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G + +    R   + G+   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNAENEKVLDFGSLIIDPAQRTVSLNGKDVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G D + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GPDMIRTVHGVGYAFE 236


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +              ++R D+  ++  L        
Sbjct: 16  LLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVML--PDMDGF 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R +R A    P++ ++    ++  +     G DD V KP         +  +     
Sbjct: 74  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +     G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 134 GSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 194 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 236


>gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 235

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +                   +  ++          +
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E  R IR  S+VP+I +S        +     G DD + KP             I   + 
Sbjct: 64  ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    N   E G ++   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETKSIKENKIHEYGDVKFDINNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R  +
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++   +  E    +      ++  ++          L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ +  R    +P++ +S        ++   +G DD V KP +H       R +L R   
Sbjct: 63  EVCKRARQKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
 gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +      +         + ++  ++  + G  G  +
Sbjct: 5   ILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLG-EKPELILLDWMMPGRSGIHL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119
           ++  +      ++P+I ++   S +  +   ++G DD + KP   + +     A   R  
Sbjct: 63  IKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRSY 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N      + +    +   V  +   L   E ++L +LM +  K   + Q+   I+G
Sbjct: 123 DPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLMTHPEKVYRREQLLDFIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE+  V+S+I +LRK L        + + R  GY  
Sbjct: 183 N-DIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGSGYRF 222


>gi|154482551|ref|ZP_02024999.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
 gi|149736576|gb|EDM52462.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   + +       + G  +  F +    E   +    D+  ++  L    G  V
Sbjct: 4   IYILEDDKNISEIEQFALKNAGYEVSAFATASDFENALTKEHPDLIIMDIMLPDRDGLSV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L+  R  ++ +++P+I ++   S    +   D G DD + KP    E+++RV A      
Sbjct: 64  LKDVRAEQSTAKLPVIMVTAKTSEMDKVKGLDQGADDYMTKPFGIMELISRVKALLRRAN 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++      I +        V G+   L  +E ++L+ L+ N G  + ++QI   ++
Sbjct: 124 VSGGSHIYSFDGITMDDAKHQVLVDGQETELTYKEYQLLKMLIQNSGIVLQRSQILDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   E   ++ HI  LR+K+  K     + + R +GY++++
Sbjct: 184 GI-DYEGESRTLDMHIKTLRRKIGEKGS--LIQTVRNVGYTMNY 224


>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
 gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
 gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       + G ++      +    +       +  ++          +E
Sbjct: 6   LVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIM--MPKMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115
           + R +R    +P++ +S        +    +G DD + KP +        + ++ R    
Sbjct: 64  VCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  + G + +  +     V G    L  RE  IL  L  N+G+  +  +IF 
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            ++         N V  H+S++R K+     G   + +   +GY I+ 
Sbjct: 184 KVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230


>gi|329939379|ref|ZP_08288715.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301608|gb|EGG45502.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 237

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        +G      +            R D+  ++      G   L+
Sbjct: 2   LIAEDDPRQAEVLRLYLDAEGYETVVAHDGRAAVDAARRLRPDLLVLDVM--MPGVDGLD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI+R  + +P++ ++   +    L   D G DD + KP   RE++ARV  + RR++ +
Sbjct: 60  VCRILRQETAMPILMLTARSNEDDLLLGLDLGADDYIGKPYSPRELMARVRTLLRRVERA 119

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R +               +  V   +      E  +L  L A  G+   + Q+     
Sbjct: 120 VPRRDGVLRVDGLTVDPLRHEVWVDDRLVDCTAGEFTVLATLAAEPGRVFTRQQLLERTR 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G +D A  +  ++ HI  LRKK+  +      + +   +GY +
Sbjct: 180 G-WDTAPTQRTIDMHIMHLRKKVERDPRRPARLLTVHGIGYKL 221


>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +  PL +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229097379|ref|ZP_04228341.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229103467|ref|ZP_04234149.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229116374|ref|ZP_04245764.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667206|gb|EEL22658.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228679963|gb|EEL34158.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686190|gb|EEL40106.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 215

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVRVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQQ 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++               + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDVKINFAKNKVYKNDIELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212


>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
          Length = 242

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         ++ R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              A+              +    R   V G+   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL +K     + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 236


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|313899606|ref|ZP_07833114.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
 gi|312955591|gb|EFR37251.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 84/222 (37%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +  G +     +G  +   +              D+  ++  L        
Sbjct: 5   LLFVEDDQAIAMGLVYTLKKEGYEVVWCDHKRSALQQLDQQTFDLLLLDVGL--PDGSGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLK 120
           ++    ++   VP++ ++        +   D G DD + KP    E+     +   R  +
Sbjct: 63  DICTYAKSRQDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRMRSVQRRYHR 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   + ++        + E   L   E R+L   + +  + ++++Q+   I+  
Sbjct: 123 QEEDIVQIQYLSIYPKQGKVYREQEEVLLTALEYRLLMVFINHPQQVLSRSQLLEGIWDA 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             + V +N +  +I +LR+KL  +      + + R LGY ++
Sbjct: 183 AGDFVNDNTLTVYIKRLREKLERDPQNPSIIVTVRGLGYRLE 224


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +   +             D+  ++  L       L
Sbjct: 4   ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVML--PELSGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R IRA     P+I ++   S+   +   D G +D V KP         + A +  + 
Sbjct: 62  EVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQ 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +         +V    R+     E   L  +E  +L Y + N+G+ + + QI + 
Sbjct: 122 SGTEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + N+V+ ++  LRKKL      + + + R +GY +
Sbjct: 182 VWG-FDYYGDTNIVDVYVRHLRKKLD---LSEVLVTLRGVGYRL 221


>gi|302530673|ref|ZP_07283015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439568|gb|EFL11384.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 222

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +        +G ++   ++     W       D   ++  L        
Sbjct: 3   LLIVEDELEFAETLRRGLVAEGFTVNVAHTGRDGLWSAMEHDYDAVVLDIML--PELSGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA  +  P++ ++         D FD G DD ++KP     +LAR+ A+ RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLLARLRALLRRGA 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     T          R          L  RE  +LE+L+  +G  + K +I   ++ 
Sbjct: 121 PARPAVLTAGDLQLDPAARTVHRGETRIELTAREFGLLEFLLRRQGAALTKNEILGHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +ENVVE ++  LR+K+    G   +++ R +GY +
Sbjct: 181 AH-YEGDENVVEVYVGYLRRKIDAPFGTRTIETVRGVGYRL 220


>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++   +  E    +      ++  ++          L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+         R   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  N+     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|17231280|ref|NP_487828.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132922|dbj|BAB75487.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L       +  ++  L        
Sbjct: 11  ILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNL--PDTSGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
            L + +++ + V ++ ++        +    +G DD + KP         + A +  I  
Sbjct: 68  SLCQEMQSRNNVLVMILTGRTEEADKIRILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L ++ G+  ++ Q+   I
Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKKL +     + + + R  GY  +
Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231


>gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      L    G +++   S         S    +  ++  L   G    
Sbjct: 6   ILVIEDDNDINKMLSKLIEKKGYNVKQAYSGTEGMLYIESLDFQLILLDLML--PGMTGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           EL + IR   ++P+I IS     +  L+ F  G DD V KP    E+        R    
Sbjct: 64  ELIKKIRKTKKLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYID 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +              I +  + ++  V G+   L  RE  ILE L+ +  K  +K  +F 
Sbjct: 124 FNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +++G  +   +EN V  HIS LR KL +     + +++   +GY +
Sbjct: 184 SVWG-DEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKL 228


>gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D   DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +            + +   ++  L       +
Sbjct: 8   ILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLML--PEMDGM 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            + + +R      P+I ++        +   + G DD + KP   RE++        R  
Sbjct: 66  TVLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQ 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K          + +    +    +  V  L  RE  +L Y     G+ + +  I
Sbjct: 126 VSTDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +A++G ++   E  +V+ HIS LR K+  N      + + R  GY
Sbjct: 186 LTAVWG-YEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGY 230


>gi|199597340|ref|ZP_03210771.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258539273|ref|YP_003173772.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591856|gb|EDY99931.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257150949|emb|CAR89921.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 243

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   +      E        A +    I   L       +
Sbjct: 3   LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + IR  S+  PLI ++   +    +   + G DD V KP     ++AR+ A++RR  
Sbjct: 63  QVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122

Query: 119 --------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                              +                    ++  L  +E  +L  L  + 
Sbjct: 123 VGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKSP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 KQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 237


>gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E   + +           ++  ++  L        
Sbjct: 5   ILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLML--PNIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRKIRESKNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D R   ++ +   L  +E  +L ++  N  +  ++ ++F
Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G+ D   + + V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 DNIWGM-DACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGYRF 228


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +              ++R D+  ++  L        
Sbjct: 16  LLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVML--PDMDGF 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R +R A    P++ ++    ++  +     G DD V KP         +  +     
Sbjct: 74  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +     G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 134 GSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 194 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 236


>gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 245

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +        +   +  ++  L   G    
Sbjct: 30  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILL--PGMNGH 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 88  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL +    + + + R +GY ++ 
Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 243


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++             ++  D+  ++  L       L
Sbjct: 3   ILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLL--PELDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + R +R    Q P++ ++   ++Q  +   ++G DD + KP    E+LAR+ A + R  
Sbjct: 61  SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G + + +  R  +       L  RE  +LEYLM +  + +++TQI   ++ 
Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   +  V++ +I  LR+K+        + + R +GYS+
Sbjct: 181 -FDFYGDYKVIDVYIGYLRRKIDRHGASSMIHTVRGVGYSM 220


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 21  ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 77

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 78  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +        I        P+ +          L  RE  + +  ++N  +   + ++  
Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 198 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 240


>gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P]
 gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P]
          Length = 232

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +       ++G  +    + +            +  ++  +    G + 
Sbjct: 8   ILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R I +   V +  ++      + +  F++G DD + KPI  + ++++V       +
Sbjct: 68  CEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKSLLRRLK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +      G I +  +       G+   LPR+E  +   L +  GK   +  I   +
Sbjct: 128 SEKQNEETVTIGDIVIDREEYVVFKAGKRISLPRKEFELFSLLTSKPGKVFKREVILDTV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V    ++ HI KLR+K+ +    D   + + +GY  
Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 225


>gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
 gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  LV D   A    +   +    +      +    + D+  ++  L     K  
Sbjct: 3   ILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDLVILDLML--PDMKGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S V L  ++   SL+  +   + G DD + KP   RE++AR+  + RR+  
Sbjct: 61  EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRING 120

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                              R  +VQ E+ P    E  +L  LM N+GK + + Q+ + I 
Sbjct: 121 PLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQIL 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G FD    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 181 G-FDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222


>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 240

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 14  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 72  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 131

Query: 123 NNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              A                      ++G +    GE   L   E R+L    A  G  +
Sbjct: 132 GGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 191

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 192 SRDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 238


>gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 221

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +           +  S+  D+  ++  L   G    
Sbjct: 3   ILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGL--PGIPGE 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    VP+I ++   ++   +   D+G DD + KP    E+LARV A  R   
Sbjct: 61  EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLRGGG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R   V+G    L  RE  +LE L+ +  +  ++ Q+   ++G
Sbjct: 121 QERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVVE ++S+LR+KL    G + + + R  GY +
Sbjct: 181 -YDFDGASNVVEVYVSQLRRKL----GSERIQTVRGAGYRL 216


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +          +   +    + E         + D+  ++       +   +
Sbjct: 5   LIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVM--MPKKDGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR+   
Sbjct: 63  VCREVRKFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITPK 122

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+          + +  +    ++  E+  L ++E  IL  L  N+ K   +  +   I+
Sbjct: 123 NDDSEKIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVFTRENLLDLIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G FD   E   V++HI +LR K+ N       + +   +GY  D
Sbjct: 183 G-FDYFGESRTVDTHIKRLRAKMDNYEHKKWNIKTIWGVGYKFD 225


>gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +                R D   ++  L       L
Sbjct: 8   ILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIML--PDMDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA S   P++ ++   +++  +    +G DD V KP    E++AR+  + RRL 
Sbjct: 66  EVLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLH 125

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S          G + +  + R+    G    L   E  +L Y M N  + ++K QI   
Sbjct: 126 RSTIWDGAVLVVGDLIMNEESREVTRAGREIRLTATEFELLRYFMRNPRRVLSKAQILDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 186 VW-NYDFGGQANVVELYVSYLRKKI-DAGRPAMIHTMRGAGYVL 227


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   +      +  ++  S+   +       L  +   D+  ++  +    G +V
Sbjct: 5   ILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLDGMEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L +       +++P+I +S     +  +   + G DD + KP    E++ARV ++ RR  
Sbjct: 64  LHVLNR--EQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRRAG 121

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        IR+   GR      +   L R E  +L  L  + G+  ++ ++   I
Sbjct: 122 SGPGMGGAEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +D   E   V++H+  LR+KL+      D +D+    GY 
Sbjct: 182 WG-WDFPGEVRTVDTHVKNLREKLKQAGASPDLIDTVWGYGYK 223


>gi|294814187|ref|ZP_06772830.1| Response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326442585|ref|ZP_08217319.1| winged helix family two component transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
 gi|294326786|gb|EFG08429.1| Response regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 239

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D              +G  ++  +          + R D+  ++          L
Sbjct: 5   ILVAEDDVKQARLIRIYLEREGNEVQIVSDGRSAIDRARATRPDLIVLDVM--MPHVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++R  SQ+P++ ++   + +  L   D G DD + KP   RE+ ARV A+ RR + 
Sbjct: 63  DVCRVLRTESQIPILLLTARTTEEDMLLGLDLGADDYMTKPYSPRELAARVRALLRRARA 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   A  G      + +     +    GE   L  +E  IL+ L    G+   + QI   
Sbjct: 123 AAVSAGAGVLAVGELEIDPARYEVRAGGEPVVLTGKEFAILQLLAEEPGRVFTRGQIIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G FD+ V E  V++H+  LR+KL         V++    GY +
Sbjct: 183 VFG-FDQNVLERTVDAHVMNLRRKLEADGRRPRVVETVYGRGYRL 226


>gi|268316932|ref|YP_003290651.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334466|gb|ACY48263.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G  ++        E    ++  D   ++  L        
Sbjct: 3   ILLVEDDERLARALARGLREEGYQVDRVADGVEAEARVQASHYDALIVDWRL--PRMDGQ 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R     +P++ ++    L+  +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TLVRRLREAGYQMPILMLTALDDLEHRVAGLDAGADDYLGKPFAFEELLARLRALLRRSP 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V          P+ +    R   V   V PL  +E  +L +L  + G+ +++T+I   ++
Sbjct: 121 VWQATDVIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SID 221
           G     V +N ++  +S LR+KL        +++ R +GY   ++
Sbjct: 181 GDP-FYVSDNTIDVTVSGLRQKLSEATPALQIETVRGVGYALRLE 224


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +    D    +E     E    L      D+  ++  L       +
Sbjct: 3   ILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIML--PKIDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +R+     P++ ++   ++   +   D+G DD + KP   +E+ AR+ A + R  
Sbjct: 61  SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +  +  +   Q +   L  +E ++LE+ + +  +   +TQI   ++ 
Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++  EE  V++HIS LR+K++   G  D +++   LGY +
Sbjct: 180 PLEQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRL 221


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ ++         +  D+G DD + KP  +  + ARV A+ RR  
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +R+ +  R   + GE  PL  +E  +LE+L+   G+ V+K  I   ++ 
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F  + + N+VE ++S LR+KL    G   + + R  GY ++
Sbjct: 181 -FAYSGDPNIVEVYVSTLRRKL----GAGLIRTVRGAGYLLE 217


>gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +       +DG  +    +      + +  +  +  ++      G   L+
Sbjct: 5   LIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIM--MPGIDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP    E+LARV A  RR    
Sbjct: 63  VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122

Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N   +    +                  + G    L   E +IL  L +N GK  +   I
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNSGKVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  I+         N V +HI +LR+KL +       V++   +GY I+
Sbjct: 183 YKEIWAEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD          L  + G  +   +       L      D+  ++           
Sbjct: 3   ILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVM--MPKIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S +P+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  EVCRQIRRNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRNA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 T   +        E +          L   E R+L YLM N G+ +  TQI S 
Sbjct: 121 DVLNTSTRLSQGNITLDPVEHKVLFTDGRVVELTPLEFRLLYYLMKNSGRILNVTQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+         V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKVEEDPDHPRHVITVRNLGYKFE 225


>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia sp. TJI49]
          Length = 233

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHTDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + DG       +G +++   +     W+    R D   ++      G    
Sbjct: 3   ILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIM--MPGMNGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R A    P++ ++        ++  D+G DD ++KP  +  ++AR+ ++ RR  
Sbjct: 61  TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       ++    R          L  RE  +LE+L+ N G  V+K Q+   ++ 
Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N+VE ++  LR K+    G   +++ R  GY +
Sbjct: 181 -GDFEGDPNIVEVYVRHLRNKVDRPFGRASIETLRGAGYRL 220


>gi|302559265|ref|ZP_07311607.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302476883|gb|EFL39976.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRTDRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESMVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 125

Query: 123 NNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           N   E                + + G +    G+   L   E R+L    A  G  +++ 
Sbjct: 126 NGGREEPAADAGGVLAFGELEIDTGGMEVRRAGQPVALTPTEMRLLLEFSAAPGTVLSRD 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 KLLERVW-EYGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 229


>gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++G   L   +G  ++            S    D+  +   ++  G   +
Sbjct: 7   ILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKVSD---DIDLVILDIMMPGISGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +    IR  S VP++ ++        L    +G DD + KP  +                
Sbjct: 64  KTCEEIRKISHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALLRRYHV 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   +  K   +  E G ++V +   +     +   L   E RIL  +M N  K  +  
Sbjct: 124 YSQTLQGEKTKEHWIEYGKVKVNTQCNEVFRNEKEISLREMEYRILLLMMENPKKVFSVK 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++ +++         N V  HI +LR K+ +       + +    GY +
Sbjct: 184 NLYESLWEEPFLYSSGNTVMVHIRRLRMKIEDDPQKPKMIQTVWGKGYRL 233


>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A    IR     +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
 gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
          Length = 235

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +    +      L       ++ ++          +
Sbjct: 5   ILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R +  +P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 63  TMTMKLRENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQ 122

Query: 122 SNNRAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                +                 +  + ++  ++ +   L  +E +ILE LM   G+  +
Sbjct: 123 ILRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             QI+  ++   +EAV  + +  HI KLRKK+       + +     +GY I+ 
Sbjct: 183 AEQIYENVW--EEEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGYKIEK 234


>gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 251

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   +++         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  LM   G+ V+   I
Sbjct: 125 RAQLNSTNQQEILNYGPLTLVPERFEAIWFESAVRLTHLEFELLHCLMQRHGQTVSPALI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPKYIKTVYGAGYCLE 232


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 81/218 (37%), Gaps = 9/218 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   + D        DG  +              + R  +  ++  L   G   LE+
Sbjct: 114 VVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGL--PGIDGLEV 171

Query: 64  PRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
            R +R A    P++ ++        +     G DD V KP   RE+              
Sbjct: 172 CRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRSTGV 231

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +RV    R   V+     L   E  +L  LM   G+ + + Q+ + ++G 
Sbjct: 232 TGGAVLVVGAVRVDPGSRQVWVEEREVVLTATEFDLLLALMRRPGQVLRREQLLADVWGE 291

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D +     V+ H++++R KL +     P+ + R +GY
Sbjct: 292 ADYSG-SRTVDVHVAQVRAKLGDAS---PIRTHRGVGY 325


>gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 236

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S     + E           ++  ++  L   G    
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAVNMVLLDIML--PGIDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----A 114
           E+ R IR     S +P++ ++        +  F+ G+DD V KP   RE+  R+      
Sbjct: 64  EVCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R             I +       ++ G+   L   E ++L  L+  RG+   +  + 
Sbjct: 124 DRRNRSNVQEVLRADGIEIDIGKHIAKLDGQPLALTLMEFKLLALLLKRRGQAQTREVLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + D+++    +++H+++LR+KL +      + + R LGY  D
Sbjct: 184 SDVWDV-DKSINTRTIDTHVTRLREKLGDAG--KLIKTVRGLGYKFD 227


>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +  +     DG         E    L  S R  +  ++  L   G   L
Sbjct: 5   ILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIML--PGMNGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   A S   +I ++              G DD V KP   +E++ARV ++ RR
Sbjct: 63  EVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRR 122

Query: 119 LKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K ++ +    E G +++  D  + ++  +V PL   E ++L  L    G+   + Q+  
Sbjct: 123 TKNASFKKELLEIGDLKINMDNYEVKIGHDVIPLTLTEFKLLCQLAGKPGRVFTRDQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DW 222
           AI G+    ++   ++ HI+ LRKKL++    + + + R +GY   +W
Sbjct: 183 AIAGVETIIID-RTIDVHIASLRKKLKSF--KNHIITIRGIGYKFMEW 227


>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
 gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 233

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     E       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
 gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
          Length = 236

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD   +++    L   +G  +   ++ +      S    D+  ++      G+  +
Sbjct: 10  ILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVM--MPGKSGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    VP++ ++           F +G DD + KP  + E++ARV A+ RR  V
Sbjct: 67  LACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
                           RD  +  +   +            E RIL  L  NRGK      
Sbjct: 127 YQGGGNRKEDDAQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+ +++      +  N V  HI  LRKKL  +      + +    GY I+
Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  +E          L  S + D+  ++  L   G   L+
Sbjct: 5   LLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLML--PGVNGLD 62

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +R    +   P+I ++      T +   ++G DD V KP   +E+         R 
Sbjct: 63  LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKEL-LARIEAVLRR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E   I      +   V G+   L + E ++LE+ + +  +  ++ ++   I+G
Sbjct: 122 AGYSEVLEFEGIVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +         V+ +IS+LRKKL +K     + +   LGY +
Sbjct: 182 VEHNE-TTRTVDVYISRLRKKLGDKG--KFLKTLPRLGYKL 219


>gi|295100813|emb|CBK98358.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D + +++        +G    GF S E       +   ++  ++  L   GE  
Sbjct: 1   MIYIVEDDSAIRELEQYALQSNGYEAVGFESSEPFWQAVHTTPPELVILDVML--PGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115
             + + +RA     ++P+I I+   S   T+   D G DD + KP    E L+RV A   
Sbjct: 59  FSILKKLRAAPSLRRLPIIMITAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALR 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N      I + +      V G    L  +E  +L  L+ N    V +  I  
Sbjct: 119 RAEPEARPNVYSFREILLDNARHSVTVSGAPVELTYKEYSLLRLLLENTNLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--KYICTVRKVGYKL 220


>gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++                             +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 240

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +    +  ++G              +    + D+  ++  L   G    
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K 
Sbjct: 62  GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKP 121

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          + N  E G I +          G+   L   E  +L  L A  G+
Sbjct: 122 AAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++  +   ++G ++ + +  +V  H+ +LR K+ +       V + R +GY  
Sbjct: 182 AISRPSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 235

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++G   L   +G  +E   +        +     +  ++      G   +
Sbjct: 6   ILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT-HLVILDIM--MPGISGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
                IR  S VP++ ++        +    +G DD + KP  +           R    
Sbjct: 63  RTCEEIRKVSNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRRRNV 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A            + G IR+ +      V+GE   L   E R+L   M    K  + 
Sbjct: 123 YDKAAQEEKSNLPEWLKKGDIRICTIQNSVFVRGEEVNLTELEYRLLLLFMEYPQKIFSA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++ + +    +    N V  HI +LRKK+         +++    GY +
Sbjct: 183 RNLYESAWEEPFDLGSANTVMVHIRRLRKKVEEDAQNPKLIETVWGKGYRL 233


>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 233

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     E       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVAINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 239

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +  + ++  +S +           D+  ++  L       
Sbjct: 6   ILVVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIML--PDLSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            EL   IR H+  P+I IS   +    L     G DD + KP +        + + R   
Sbjct: 64  FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           I       N   + G +    +     V+G+      +E  +L +   +        Q++
Sbjct: 124 IMENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D   EE  V  HISKLRKK+ +       + + R +GY  
Sbjct: 184 ELVWGN-DVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKF 229


>gi|282853701|ref|ZP_06263038.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583154|gb|EFB88534.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923679|gb|EFS87510.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967118|gb|EFT11217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314983174|gb|EFT27266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092396|gb|EFT64372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103851|gb|EFT75827.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327251|gb|EGE69027.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 236

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARSDTPDVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 QREEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+  N      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R+     PL+ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
           abscessus]
          Length = 227

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G +++  ++             D+  ++  L   G   L
Sbjct: 7   ILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVML--PGLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R ++AH+ +P++ ++   +    L     G DD + KP   R ++ARVA       R
Sbjct: 65  EVCRQVQAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRRTHR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G +R+    R    + +   L R E  +L YL  N    +++ ++   ++
Sbjct: 125 IAPPSTDVRIGQVRIDVSERRVYHRDDEVHLTRTEFDLLAYLADNPRVAISRDRLLDQVW 184

Query: 179 GLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G           V+SHI  LR+KL    G + + +   +GY+++
Sbjct: 185 GWSAGLPSGRRTVDSHIKALRRKL----GQELIRTVHGIGYALE 224


>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB056]
 gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB058]
 gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB059]
 gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii AYE]
 gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         + ++  ++  +       L
Sbjct: 4   IMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMV--PRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|308051430|ref|YP_003914996.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307633620|gb|ADN77922.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A  +      F + G  ++     +    L +S    +  ++  L     + L
Sbjct: 3   ILIIEDDATNRQYLSKGFSEQGYVVDCAEDGQQGLMLATSESYRLIVLDRML--PKLEGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +RA     P++ +S    +   +    +G DD + KP    E+L R   +  R  
Sbjct: 61  ALLAALRATGNTTPVVILSALGDVDERIKGLRAGGDDYMVKPFSFAELLIRAQRLMERPS 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++     + +        V      L  +E ++L +L+ ++G+ + +T +F +++
Sbjct: 121 NDSRPSQLSLANLHLDLLAHKARVDDHTMTLQPKEFQLLRFLLEHQGQLLTRTLLFESVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI++LRKKL+       +++ R  GY I
Sbjct: 181 D-YHFDPGTNVIDVHIARLRKKLQEAGARVHIETVRGAGYRI 221


>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++    T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
 gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
          Length = 238

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +           L       ++ ++          +
Sbjct: 8   ILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEVQLAIVDVM--MPRMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR + 
Sbjct: 66  TMVVKLREMYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYRR 125

Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              R                     D  +  V  +   L   E +IL  L+ N G+    
Sbjct: 126 FMERLNRQQPENSKIHRLGGLEINEDTVEVTVDDKPVKLTPIEYKILLLLVQNPGRVFPA 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +I+  ++   + A+  + V  HI  +R+K+  N      V     +GY I+ 
Sbjct: 186 DEIYERVWN--ERAINTDTVMVHIRNIREKIEVNPKEPKYVKVVWGVGYKIEK 236


>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++   +  E    +      ++  ++          L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+         R   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
 gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
          Length = 220

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 5   ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +  +     E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 123 VAKELHYGKLTILPEDFNVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL +    + + + R +GY ++ 
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 218


>gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++   +    +    +   D+  ++  L   G+   
Sbjct: 3   ILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E++ARV +I RR K 
Sbjct: 61  TLLQNLRRKRCTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRRGKP 120

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                            R    Q +V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 REFTLLKVADLELDLTRRKATRQHDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
 gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       +    ++          L      D+  ++  L   G    
Sbjct: 3   ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVML--PGVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            +   +R     P++ ++   +++  +   + G DD + KP    E+LARV A + R   
Sbjct: 61  GVLAAVREQKDTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R  +  G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  + +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPYDTKLLHTVRGMGYVLE 220


>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 236

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 24/235 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMV--PGLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 NNRAETGPIRV-----------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           +     G  +                    +G +    GE   L   E R+L    A  G
Sbjct: 125 SGPGGRGGEQPGPEEPEGGVLRFGDLEVDPEGMEVRKGGEQVALTPTEMRLLLEFSAAPG 184

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 TVLSRDRLLERVW-EYGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 234


>gi|167577808|ref|ZP_02370682.1| response regulator [Burkholderia thailandensis TXDOH]
 gi|167615936|ref|ZP_02384571.1| response regulator [Burkholderia thailandensis Bt4]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +           G  ++   +      L ++   D   ++  L   G   L 
Sbjct: 4   LVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSL--PGMDGLT 61

Query: 63  LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L R +R       P++ ++   +L   L  F  G DD + KP   +E+ AR+ A+ +R +
Sbjct: 62  LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRYR 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +A      +R+       E  G    +P +   +L  LM    + +   ++ + I+
Sbjct: 122 GQVTQAALCRADVRLDLQTLTVERAGRPVKMPPKCLHLLRILMQTPNRVIGHAELEAEIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   + + + +H+  LR+ L  +   D +++   LGY +
Sbjct: 182 G--DALPDSDTLRAHVYTLRRALTAQGEPDLIETVHGLGYRL 221


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +   ++           R D   ++  L       LE
Sbjct: 14  LVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIML--PDFDGLE 71

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           + R IR+    VP++ ++   +++  +    +G DD V KP    E++AR+  + R    
Sbjct: 72  VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAGA 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +++    G + +  D R+    G    L   E  +L +LM N  + ++K QI   +
Sbjct: 132 QQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDRV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 192 W-NYDFGGQANVVELYISYLRKKI-DAGHEPMIHTMRGAGYVL 232


>gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
 gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    +         +   D+  ++  L       +
Sbjct: 8   ILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGL--PDIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  S VP++ +S        +   D+G DD + KP   +E+    RVA  +R  
Sbjct: 66  EVVRRIREWSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRTP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E   +RV    R+  VQG    L   E  +++ L+ + G+ +   Q+   ++G
Sbjct: 126 DQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEYDLIKVLVQHAGRVLTHNQLLRQVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                 E +++  +IS LR+K+         + ++  +GY +
Sbjct: 186 -PAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRL 226


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 45  ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 102

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 103 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 162

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 163 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 222

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 223 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 269


>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         + ++  ++  +       L
Sbjct: 4   IMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMV--PRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++  ++      L      ++  ++  L   G+   
Sbjct: 3   ILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNL--PGKDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+   +R +    ++ ++    L   +   D G DD + KP    E+LARV         
Sbjct: 61  EVLEQLRRNGTQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +               L  +E  +L+ LM   G+ + +TQI S ++ 
Sbjct: 121 IPQPEVFSVQDLELDPRRHRAYRGSRRIDLTTKEFALLQVLMRQTGEVLTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ ++     + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRAKVDDQSEVKLIHTIRGVGYVLE 221


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ ++         +  D+G DD + KP  +  + ARV A+ RR  
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +R+ +  R   + GE  PL  +E  +LE+L+   G+ V+K  I   ++ 
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F  + + N+VE ++S LR+KL    G   + + R  GY ++
Sbjct: 181 -FAYSGDPNIVEVYVSTLRRKL----GAGLIRTVRGAGYLLE 217


>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
           [Actinomyces oris K20]
          Length = 219

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +            L      D+  ++  L        
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGL--PDIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + +R      P+I ++   S+   +   + G DD + KP    E+    RV      
Sbjct: 62  EVLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ S+++
Sbjct: 122 TAPDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G   V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218


>gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment']
          Length = 225

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             ++GV ++  NS +  E+L S    DV  ++  L   G+  +
Sbjct: 3   LLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLL--PGKDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +RA     P++ ++   +L+  +   D+G DD + KP    E+LAR+ A + R  
Sbjct: 61  QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +          G    L  +E  I+E+L    G+ V +T +   I+ 
Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N+V+ HIS LRKK+        + + R  GY +
Sbjct: 180 EDEFDNLTNLVDVHISNLRKKIDAGSTVSLIHTVRGRGYRL 220


>gi|229091866|ref|ZP_04223055.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228691446|gb|EEL45205.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 215

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DNVIQVQDLKIDFTKNKIYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|229119146|ref|ZP_04248471.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
 gi|228664299|gb|EEL19815.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
          Length = 230

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 15  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 73  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+   GK ++   I S ++G +
Sbjct: 133 VAKELHYGKLTLLPEDFKVFYGDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL +    + + + R +GY ++ 
Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 228


>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 232

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +              +   +       L ++   D+  ++  L       L
Sbjct: 5   ILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIML--PSMDGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA +   P++ ++   S    +   ++G DD + KP   RE+ ARV A  RR  
Sbjct: 63  QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +S   +          G + +    R   +  +   L  +E  +L Y+ ++ G+  ++ +
Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A++G +  +  E+ V SHI++LR KL  +      V +   +GY  
Sbjct: 183 LLDAVWG-YQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      +S   D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGL--PRRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        ++G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D        +G   E   + +    L  + R D+  ++  L       L
Sbjct: 9   ILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRAFRPDLILLDLML--PEIGGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ R IRA S VP++ ++        L   + G DD + KP   RE++ARV         
Sbjct: 67  EVARTIRAQSDVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLRRVGG 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G I V  D  +     E   L   + R+L  L    G+ +++ ++   + 
Sbjct: 127 GARAARIYRVGAIAVDLDAFEARCGDEPVALSPTQLRLLAALAQAEGRALSRHELLDQL- 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +  V+   V++H+  LR++L        +++ R +GY +
Sbjct: 186 --GEAYVDTRTVDAHVKNLRRRLGPCGAQ--IETVRGVGYRL 223


>gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44]
 gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      G++G  ++  ++      L +    D+  ++  L   G   L
Sbjct: 3   LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGML--PGIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 61  AVLAALRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 120

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    E   +R+               G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 121 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 VWDM-NFDSETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 224


>gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
 gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 5   ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                + +     +  + GE   L   E  IL  L+++ G  V+  +
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231


>gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++   A    +G  +   +       + +++  DV  ++  L   G   LE
Sbjct: 7   LVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVML--PGFDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115
           + R ++A   VP++ ++        L     G DD ++KP            +L R    
Sbjct: 65  VCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADRA 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  +         G + V    R      +   L R E  +L Y  +     +A+  + +
Sbjct: 125 HEAVPAERGGLAVGDLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIARESLLA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  D A     V+SH+  LR+KL    G D + +   +GY++D 
Sbjct: 185 EVWGWGDGAG-SRTVDSHVKALRRKL----GGDLIRTVHGVGYALDV 226


>gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
 gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus cereus AH820]
 gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
 gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus cereus AH820]
          Length = 220

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 5   ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 123 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + + V +HI  LR KL +    + + + R +GY ++ 
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 218


>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
 gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++         +G  +      E    +    + ++S +   ++       E
Sbjct: 17  LMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDK-NISLVILDVMMPKMDGWE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
             + IR  SQVP+I ++     +  L  F+ GVD+ + KP   + +              
Sbjct: 76  TLKEIRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTSDA 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S  R   G I +        + G+   L  +E  +L+Y + NRG  +++ +I + ++  
Sbjct: 136 ASEERLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNVW-N 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++H+ KLR K+  K   D + +   +GY  + 
Sbjct: 195 YDYYGDARTIDTHVKKLRSKMGAKG--DYIKTIWGVGYRFEV 234


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G  +E     E           DV  ++           
Sbjct: 5   ILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVM--MPKLGGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           E+ R + +   V ++ ++    +   +   + G DD ++KP          + L R    
Sbjct: 63  EVCRRLESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+RV    R  E+  +   L  +E  +L  L+++ G+   +  +  
Sbjct: 123 EGAPAPEGTEVILGPLRVRPSSRTAELGVKALDLTPKEFDVLALLVSHTGRVYTRDDLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G+ D       V+ HI +LRKKL        + +   +GY  + 
Sbjct: 183 QVWGI-DYVGGTRTVDIHIQRLRKKLE--PHQSMLQTVYGIGYKAEK 226


>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 227

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G   E     +         + D+  ++  L   G+    
Sbjct: 6   LVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLML--PGKDGTV 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        +   ++G DD V+KP   +E++AR+    RR++  
Sbjct: 64  VCREIRRESGVPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEEP 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +   G      G+V  L   E  +L  L     + +++  +   ++G +
Sbjct: 124 EPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGYK 221


>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +  E    L      DV  ++  L         
Sbjct: 4   LVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIML--PRLSGYN 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R   + VP++ +S         D  D G DD + KP  +  ++AR+ A+ RR   
Sbjct: 62  VCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGAN 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +    R          L  RE  +LEYLM    + V+KT+I   ++  
Sbjct: 122 RRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NVVE ++  LR+K+        + + R  GY +
Sbjct: 182 FD--TDPNVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRL 219


>gi|251797032|ref|YP_003011763.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544658|gb|ACT01677.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 216

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD  ++     + F  +G ++      E    +    + D++ ++          +
Sbjct: 3   LLLADDEPMMLQILKSYFIKEGFNVLTAGDGEEALEMFYEHQVDLAVLDWM--MPKVSGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I+  S+  ++ ++     +  L   ++G DD V KP   R ++AR   +      
Sbjct: 61  EVCKEIKKVSRTKVLLLTAKGEPEDELYALNAGADDYVRKPFDPRVLIARACKLLNWASQ 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +G + V  + +     G       +E ++++YL+ N+G+ V +  +   ++G F
Sbjct: 121 LR----SGDLVVDMEAQKIYRDGSDVQATSKEFQLMKYLIQNKGQIVPRKMLLDQVWG-F 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   ++  V++HI +LR+K+        + + R LGYS++ 
Sbjct: 176 DYYGDDRTVDTHIRRLREKIGET----RIKTFRGLGYSLEE 212


>gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli]
 gi|47716815|gb|AAT37590.1| SilR [Escherichia coli]
          Length = 226

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N  G   + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLEV 223


>gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
 gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
          Length = 233

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|304405338|ref|ZP_07386997.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345377|gb|EFM11212.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D   A       +++             + + D+  ++  L        
Sbjct: 4   ILVIEDDEKIADMLSAAIAKYDFAVQVVEDFRLVLECFLAVKPDLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IRA S  P+I IS   S    +   ++G DD + KP     ++A++ +  RR   
Sbjct: 62  YWCRQIRAQSTCPIIFISARDSQMDQVMALENGADDYITKPFDIEIVIAKIRSQLRRAYG 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +     V       + +      QG    L ++E  +LE LM   G+ V++ ++ 
Sbjct: 122 AYAAGQEQERTVTSAGIVLYPERFVVSCQGNSIELTQKEAALLEVLMLKEGRVVSRERLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      +++N +  +I+++R+KL++    D +++ R  GY +
Sbjct: 182 DLMW-EDQHFIDDNTLNVYITRVRRKLKDIGIGDRIETVRGAGYRL 226


>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
           [Corynebacterium pseudotuberculosis C231]
 gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 237

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   NS      +    + D   ++      G    
Sbjct: 11  ILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVM--MPGMDGY 68

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR  
Sbjct: 69  ELLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGS 128

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +   +         D  +    G+V  L   E  +L  LM N    ++K +I  
Sbjct: 129 SVEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILD 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 189 HVW-HYDFGGDGNVVESYISYLRRKI-DTHDPQLIQTVRGVGYVL 231


>gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 232

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ I+          + 
Sbjct: 7   LIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEEIHLAIIDIM--MPRMDGIR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR +  
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRRF 124

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +                 D  +  + G    L   E +IL  L  N G+  +  +I+ 
Sbjct: 125 LEKLVPQENVHVIGGLEINEDTVEVTMDGNPVKLTPIEYKILLLLAKNPGRVFSSEEIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   ++A+  + +  H+  +R+K+  +      +     +GY ++ 
Sbjct: 185 RVW--QEKAINTDTIMVHVRNIREKIEIDPKKPKYLKVVWGVGYKLEK 230


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    +      +  SA  D+  ++           
Sbjct: 5   ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVM--MPKVDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R +R   S VP++ ++    ++  +   D G DD + KP         + A +    
Sbjct: 63  EVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRRKD 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  D R+    G+   L  +E  +L   M N  + + +  I   
Sbjct: 123 SGSRSGSQRLIFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEEHGGKRVIQTIRGAGYIL 225


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G  LE  +S E           D+  ++      G    
Sbjct: 6   ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVM--MPGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E  + IR  S VP++ ++        +   + G DD + KP  HRE       +L R+  
Sbjct: 64  ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +  N       + +  D       GE  P+   E ++L  LM+  GK V K  ++
Sbjct: 124 DKNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G  +    +  ++ H+S +R+KL        + + R +GY  
Sbjct: 184 LEVLGR-EIMAYDRSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMF 228


>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
 gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
           [Streptococcus pyogenes]
 gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
 gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
 gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
 gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
 gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
 gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
 gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
 gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
 gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
 gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
 gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
 gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
 gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
 gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
 gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
 gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
 gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
 gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
 gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
 gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
 gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
 gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
 gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
 gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
 gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
 gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
 gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
 gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
 gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
 gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
 gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +       F      +    + +       +A  D+  ++          L
Sbjct: 5   ILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTA-PDIILLDIN--MPQMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
           E+ R IR     P++ ++     +  ++   SG DD + KP   +E+ AR+ A     +R
Sbjct: 62  EVCRKIRDKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKREQR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G + +    ++ ++  E+    + E  I+E L  + G+   K +I+    
Sbjct: 122 HSQNTEFRFHGELCIDYGQKNVQINEEIIEFTKLEYEIIELLSTHPGQVFDKERIYEITC 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +  V+   I ++RKK+ N    + +++   +GY 
Sbjct: 182 G-YDAEGDSRVITELIRRIRKKIGNYSDTEYIETVWGMGYK 221


>gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G ++    + E      +    D+  ++  +  K     
Sbjct: 4   ILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT-DLIILDIMMPIK--SGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  +  P++ ++           F +G DD ++KP  + E+++RV A+ RR  +
Sbjct: 61  KACIEIREKTSAPILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRRYYI 120

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +  +   +++     +  +  E   L   E R+L  + +NR K  +   +
Sbjct: 121 YKGKEAPESSDSIDINGLKINKTSNEVSIDNEEIILTEIEYRLLLLMASNRSKIFSAQNL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI  LR KL  +      + +    GY I+
Sbjct: 181 YESVWNEPYFYTNNNTVMVHIRNLRSKLECDPQNPKYIKTVWGKGYRIE 229


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D + V +  +     +   +      E    +      D+  ++  L       +E
Sbjct: 6   LVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWML--PKVSGIE 63

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +RA   +  +P+I ++        +   D+G DD V KP    E++ARV A+ RR+
Sbjct: 64  ICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +R   G I +           E   L   E R+L+Y M + G+  ++ Q+   +
Sbjct: 124 RPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLDTV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  VE   V+ H+ +LRK LR   G DP+ + R  GY++
Sbjct: 184 WG-SDVYVEARTVDVHVGRLRKALRQSGGEDPIRTVRSAGYAL 225


>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 225

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|315092676|gb|EFT64652.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 236

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARSDTPDVVQRLGAGADDYVCKPFRSAELIARIRARLRTPVA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 QREEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+  N      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     +    +   +      +    +  S   D+  ++  +        
Sbjct: 6   ILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMI--PKISGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S    ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 64  DLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
            N                       F       L + E +I++ L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDWN 223
             +G FD    +  +++HI  +R+K+ +       + +   +GY    ID N
Sbjct: 184 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYKSGGIDDN 234


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +         D+G  +                  D   ++  L   G   L
Sbjct: 10  IFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLML--PGVDGL 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  S   P+I IS   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 68  EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQE 127

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +              + +    R+    G+   L  RE  +L +   + G+  ++  +
Sbjct: 128 AMSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQAL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V SHI++LR K+  +    + + +    GY +
Sbjct: 188 LDQVWG-YQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234


>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 253

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G S+           +      D+  ++           
Sbjct: 16  ILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVM--MPRLNGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            + + IR  S +P+I ++    +   +   + G DD + KP            IL R   
Sbjct: 74  GVCQKIREISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +S    +   +R+ +  R      ++ PL   E  +LE L    G+ V++++I 
Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G       +  VV+ H+++LR K+  ++   + + + R +GY
Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGY 239


>gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +      +         + ++  ++  + G  G  +
Sbjct: 5   ILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLG-EKPELILLDWMMPGRSGIHL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119
           ++  +      ++P+I ++   S +  +   ++G DD + KP   + +     A   R  
Sbjct: 63  IKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRSY 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N      + +    +   V  +   L   E ++L +L+ +  K   + Q+   I+G
Sbjct: 123 DPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLITHPEKVYRREQLLDFIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE+  V+S+I +LRK L        + + R  GY  
Sbjct: 183 N-DIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGSGYRF 222


>gi|168186973|ref|ZP_02621608.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295067|gb|EDS77200.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 227

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  ++    DG  ++G       +        D+  ++  L    E   +
Sbjct: 6   LVVEDEISINDILVSALRSDGYIVKGVFLASEAKEALGLFNPDLVLLDINL--PDENGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP H +E+        R    Y
Sbjct: 64  LCRYINKKCIIPIIMLTARNDIVDKVLGLELGADDYITKPFHIKEVLTRVKVAMRRVNKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +       +++  +GR      +   L  +E  +LE+ + NR K   + ++   
Sbjct: 124 KDSSEESFIDINNSVKINLEGRIVLKNNKEVKLKPKEYELLEFFVKNRNKVFCREELLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  FD   E   V+ H+ +LR KL +K     +D+   +GY +
Sbjct: 184 VW-EFDYDGEIRTVDVHVRRLRSKLNDKHEASIIDTVFGVGYVM 226


>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
 gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ +++  F S         S   D++ ++  L       L
Sbjct: 5   ILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIML--PDISGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111
            + +I+R      P+I ++        +     G DD + KP            +    +
Sbjct: 63  SICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +    E   + +     +  + GE   L   E  IL  L+  +G  V+  
Sbjct: 123 KYNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +F  I+         N +  HI  LR+K+++  G    + +   +GY I+
Sbjct: 183 DLFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGYKIE 233


>gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 251

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +        +      +      DV  ++  L   G   LE
Sbjct: 18  LVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGL--PGIDGLE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR +V 
Sbjct: 76  VCRQIRTFSDAYVVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRVL 135

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +              + GP+ +    R+  + GE   L R E  ILE L  + G  +++ 
Sbjct: 136 HTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSRR 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 196 QLIEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGYRM 244


>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           ++E  +         +    D+  ++           
Sbjct: 6   ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVM--MPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ ++IR+ S VP+I ++     Q  +  FD G+DD + KP     ++ RV A       
Sbjct: 64  EVAKMIRSQSNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +N      +RV  D     V      L  +E  IL+ L+ N  + + +  I   ++G
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 184 -YDYIGESRIIDTHMKNIRKKLDIP----YIKTIKGIGYKIDE 221


>gi|325263675|ref|ZP_08130409.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
 gi|324031384|gb|EGB92665.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I      G+  +GF          +    ++  ++  L G  G  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAQGFAEGGSFMEALAFDTPELILLDIMLPGEDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   +       +P+I ++   +    +   DSG DD V KP    E+++RV A+ RR 
Sbjct: 61  LLGKLKSSSKTKDIPVIMVTAKGAEYDKVVGLDSGADDYVTKPFGMMELVSRVKAVLRRT 120

Query: 120 KVSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++++ +     + V     +  V G+   L  +E  +LE LM N+   + + Q+   I
Sbjct: 121 GRASDKDDMSVGGVCVNVKKHEVTVDGKTVTLTLKEFELLERLMRNQNIVLTRDQLLEDI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL  K   + +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGVKG--EIIETVRGVGYRI 220


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +        +    DV  ++  L   G    E
Sbjct: 4   LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIML--PGRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +R+++   P++ ++         D FD G DD + KP   R ++AR+ A + R   
Sbjct: 62  VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I + ++  
Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +           +    +  V  ++      G    
Sbjct: 12  ILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVM--MPGMDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           E+ R+++    V  I ++    ++  +     G DD + KP    E+LAR+   I     
Sbjct: 70  EVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHYP 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++   GP ++    ++    G +  L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 130 HLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   EEN+VE +I  LR KL ++     + + R  GY +D+
Sbjct: 189 YDFGGEENIVEVYIRSLRDKLNDR-QHRIIRTLRGAGYRVDF 229


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 253

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G S+           +      D+  ++           
Sbjct: 16  ILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVM--MPRLNGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            + + IRA S +P+I ++    +   +   + G DD + KP            IL R   
Sbjct: 74  GVCQKIRAISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +S    +   +R+ +  R      ++ PL   E  +LE L    G+ V++++I 
Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G       +  VV+ H+++LR K+  ++   + + + R +GY
Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGY 239


>gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +  +++     +    + S    D+  ++  L        
Sbjct: 3   ILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLML--PEINGT 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R  +   P++ ++   +L   +  F+SG DD + KP    E+L R+ A+ RR  
Sbjct: 61  ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V            +          G+   L  +E  +LEYL  N G+ +++T I   ++ 
Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   N+V+ ++ +LR K+        + + R +GY I+ N
Sbjct: 181 QS-FEGLTNIVDVYVRQLRAKIDEPFDRKLIHTVRSVGYVINEN 223


>gi|160939834|ref|ZP_02087181.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437268|gb|EDP15033.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +         G + EGF + E         + D+   +  L   G    
Sbjct: 4   IYIIEDDENIMNLLKIALEGFGYAAEGFETAEEGLARMREEKPDLVIFDWML--PGMDGT 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           E  + +R       VP++ ++        +   D G DD + KP    E+ AR+ +    
Sbjct: 62  EAIKEVRNTEQLKYVPIMLLTAKEKELDKVVGLDCGADDYMVKPFGVLELSARIRSLLRR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +   +      I+V    R+    G +  L  +E  +L YL+ N+ + V + ++ + 
Sbjct: 122 TKREEDRDVLFYQDIQVNRKTREVSSGGRLVELTLKEFELLVYLLENQSRVVTRDELLNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++   E   ++ HI  LR+KL  + G   + + R +GY +
Sbjct: 182 IWG-YEYDGETRTLDMHIRTLRQKLGEEGGA-CIKTVRGVGYRM 223


>gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36]
 gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36]
          Length = 237

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +K+         G S+      +  + + ++   D+  ++      G+   
Sbjct: 7   ILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
            L + IR  SQVP+I ++        +   + G DD + KP   RE+LAR+       + 
Sbjct: 65  TLCQKIRRTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLRRSSY 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +          +   +     +       L   E  +L+  + N  + +++  +  
Sbjct: 125 TKPTQGRYFIFAHWKLDTLTRQLINQHDNATTELSGSEFNMLKLFVTNPNQVLSRDALSD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           A  G  +    E  ++  +S+LR+KL +       + + R  GY +
Sbjct: 185 ATRGR-EALPLERGIDIQLSRLRQKLGDNSKSPTLIKTIRGRGYVL 229


>gi|50842818|ref|YP_056045.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289425213|ref|ZP_06426990.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|295130871|ref|YP_003581534.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|50840420|gb|AAT83087.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289154191|gb|EFD02879.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|291375364|gb|ADD99218.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313764116|gb|EFS35480.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771854|gb|EFS37820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792423|gb|EFS40518.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801533|gb|EFS42778.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313809578|gb|EFS47314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813262|gb|EFS50976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816381|gb|EFS54095.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313827322|gb|EFS65036.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313829983|gb|EFS67697.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833010|gb|EFS70724.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314914892|gb|EFS78723.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918039|gb|EFS81870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919689|gb|EFS83520.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930068|gb|EFS93899.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956471|gb|EFT00759.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314957307|gb|EFT01410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314963204|gb|EFT07304.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967673|gb|EFT11772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314972933|gb|EFT17030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975639|gb|EFT19734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984091|gb|EFT28183.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315078181|gb|EFT50226.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080885|gb|EFT52861.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315095758|gb|EFT67734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098866|gb|EFT70842.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101706|gb|EFT73682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109432|gb|EFT81408.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327329939|gb|EGE71693.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL097PA1]
 gi|327330096|gb|EGE71849.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA2]
 gi|327442666|gb|EGE89320.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327443798|gb|EGE90452.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327452406|gb|EGE99060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327452714|gb|EGE99368.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327453471|gb|EGF00126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328752586|gb|EGF66202.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328753863|gb|EGF67479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328761465|gb|EGF74990.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL099PA1]
          Length = 236

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+  N      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + +   +   ++     +       S   D   ++  L    +   
Sbjct: 19  ILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIML--PKKDGF 76

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ + IR  +   P++ ++    ++  +   D G DD + KP    E    +  +     
Sbjct: 77  EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  +   + V  +            L  +E  ILEYL+ N+GK V+K +I   +
Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  FD     N+VE +I  LRKK+ +      + + R +GY +
Sbjct: 197 WD-FDYEGGSNIVEVYIKFLRKKIDDNFSPKLIHTIRRVGYIL 238


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G ++           L      D   ++  L       L
Sbjct: 4   ILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLML--PSVDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-----RVAAI 115
           E+ R IR  ++  P+I IS   S    +   ++G DD + KP   +E++A          
Sbjct: 62  EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++       + +    R   + G+   L  RE  +L +   + G+  ++ ++  
Sbjct: 122 AMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
            ++G +     E+ V +HI++LR K+  +    + V +    GY   + N
Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAELN 230


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 265

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    ++  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  LM   G+ VA + I
Sbjct: 125 RAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    L    G       + +    +  S    +  ++           E
Sbjct: 9   LVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLM--MPDISGEE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAIY 116
           + R IR  S+VP+I ++        ++    G DD V KP   +E+ A      R     
Sbjct: 67  VCRAIRKKSRVPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRRTESD 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V  N    G +    +  +   +G    L   E +IL  L+   GK   + ++  A
Sbjct: 127 LVPLVKRNSWRNGDLVTDFEKNEVRKKGVSLTLTPSELKILSVLIKYPGKVFTREELIEA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                  A  +  ++SHI  +RKK+ +       V +   LGY  
Sbjct: 187 ALDKG-FAGYDRAIDSHIKNIRKKVEDDPKNPVYVRTIPGLGYKF 230


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      +S   D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGL--PRRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
 gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 241

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   S +P++ ++        +   + G DD + KP + RE        +  ++
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQI 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAEISFGEFSLDLATREMYHGNEAIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D        I    +   +++  ++ +   +L  +++ D+  I+  L   G   L
Sbjct: 3   ILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRML--PGIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +++RA   ++P++ +S   S+   ++    G DD + KP    E+LAR+  + RR K
Sbjct: 61  SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  +       ++  +        +   L   E ++L YL+ +RG+ + +T +   I+G
Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++   + N+V+ HIS+LR K+      + + + R +GY I+ 
Sbjct: 181 -YNFDPQTNIVDVHISRLRSKIDRGFDKELIKTIRGIGYKIEE 222


>gi|325956445|ref|YP_004291857.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333010|gb|ADZ06918.1| Response regulator [Lactobacillus acidophilus 30SC]
          Length = 238

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 3   ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 63  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 122

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A     +                         V  L  +E  +L  +     +  
Sbjct: 123 MEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 3/219 (1%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLEL 63
           ++D A +         + G S+    S E    + +  R D+  I+  L    G  + + 
Sbjct: 2   VEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTKT 61

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKVS 122
            R      ++P+I ++        +  FDSGVDD + KP   RE++ARV A+  R    +
Sbjct: 62  LRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRSTDGA 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E+  + + +     ++ GE   L  R   +L+YLM N  + +++ Q+    +G   
Sbjct: 122 GSLIESNGMSLNTHNHTLQINGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWGRSV 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             VEE  V+ +I +LRKKL        + +   +GY  D
Sbjct: 182 Y-VEERTVDVYIVRLRKKLEPSGKSAVIKTIHGVGYVYD 219


>gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
 gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
          Length = 232

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +           G  +    S+E  + L +    D+  ++  L    G + 
Sbjct: 5   ILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQTSGVQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           +   R      ++P+I ++            + G DD + KP   RE++ARV A    R 
Sbjct: 65  VGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALLRRRA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + N      + +       +V  +       E ++L + M +  +   + Q+   ++
Sbjct: 125 PQKTENIIRLSSLTLDPSQFSVQVADKKIEFSPSEFKLLHFFMTHPNRIYTRRQLLDLVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  ++ HI +LR+ L +      V + R  GY  
Sbjct: 185 GDH-IFVEERTIDVHIRRLRRGLESVNLAHWVQTIRGSGYQF 225


>gi|269957744|ref|YP_003327533.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306425|gb|ACZ31975.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 246

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 25/241 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D    +D        +G  +          E  ++    D+  ++  L   G   
Sbjct: 4   ILVVEDEESYRDPLTYQLAREGFDVVAAADGLEAIEKFEADGGIDIVLLDLML--PGLSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
            E+ R +R  S VP+I ++   +    +   + G DD V KP   RE+LARV A+     
Sbjct: 62  TEVCRRLRLVSDVPVIMLTAKDTEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRA 121

Query: 116 ---------------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                              +  +   + GP+R+  D     V G    LP +E  +LE L
Sbjct: 122 PVAVDPSGRARPDDGRHGWEDDDGVLDVGPVRMDVDRHTVTVDGAPVALPLKEFDLLELL 181

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           + N G+ + + Q+   ++G  D   +   ++ H+ +LR K+    G    + + R LGY 
Sbjct: 182 LRNAGRVLTRGQLIDRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPGTPRFLLTVRGLGYK 240

Query: 220 I 220
           +
Sbjct: 241 L 241


>gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++    A+   +G ++           L  SA  D+   +  +    G  +
Sbjct: 4   ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHVDLIICDIMMPNMDGYAL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
            +  R   A++ +P++ ++   +       F  G DD + KP+   E++    A + R  
Sbjct: 64  TDTLRK--ANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRRSR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  R   G + +  D          + LP++E  +L  L++   +   + Q+   I+G
Sbjct: 122 IINERRLSIGEVELNYDTLTVHRNNNSYILPKKEFYLLFKLLSYPKQIFTRQQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +E  V+ HI +LR+K  +   F+ + + R LGY  + 
Sbjct: 182 M-DAEADERTVDVHIKRLREKFADFPEFE-IVTVRGLGYKAEK 222


>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++   +  E    +      ++  ++          L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ +  R    +P++ +S        ++   +G DD V KP +H       R +L R   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
 gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
          Length = 258

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 94/234 (40%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    D    L   +  +    L  S   D+  ++  L   G   L
Sbjct: 24  ILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRL--PGMGGL 81

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R    + P++ ++   S    +   + G DD ++KP    E+ AR  A+ RR +
Sbjct: 82  DICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTR 141

Query: 121 VSNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           ++ ++                 P  +        + G+   L  RE  +L +     G+ 
Sbjct: 142 MNRHQENAELEQNGAAEPLKLGPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRV 201

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++++   ++G +     E+ V +HI++LR K+  +      V++   +GY  
Sbjct: 202 FRRSELLDEVWG-YGHDGYEHTVNTHINRLRGKIETDPGNPQYVNTVWGVGYRF 254


>gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 40  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 98  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157

Query: 123 NNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              A                      ++G +    GE   L   E R+L    A  G  +
Sbjct: 158 GGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 217

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 218 SRDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 264


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++             +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  KICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G F
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G S+    +      +    + D+  ++  L  K     
Sbjct: 4   ILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEK--NGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + + IR  S  P+I ++    +   L+ FD G DD + KP    E++ARV         
Sbjct: 62  TILKEIRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAVG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    + G + +        + GE   L  R+  +L +L  +  +   + Q+   ++
Sbjct: 122 SPDSATSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G ++    +  V+  I +LRK L+     +  + + R LGY +
Sbjct: 182 G-WEYEGSDRAVDLAIKRLRKALKEWDEAEGEIKTLRGLGYQL 223


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++       ++G+                S   D+  ++          +
Sbjct: 5   ILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIM--MPKMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           +    IR    +P+I +S        +    SG DD ++KP +        +  L R + 
Sbjct: 63  QACLKIREEKSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +K +    E G + + +D R   VQ +   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            A++   D    +N V  HI+ +R+K+  +      + +   +GY I
Sbjct: 183 EAVW-KEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGYKI 228


>gi|1903396|gb|AAC45062.1| response regulator protein [Aeromonas jandaei]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +      + +R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFTLGQQLLSRLAQSRPDFLILDVGL--PDISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +R  +  PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRTLTDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S        + +  +      +G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 123 PSA--QPAPLLALDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQD 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 181 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 221


>gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 239

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   +  +    L  + + D+  ++       +  +
Sbjct: 6   ILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIM--MPKKNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +IR  S +P++ +S        +   + G DD + KP +  E++ARV ++ RR   
Sbjct: 64  DTTMLIRQESIIPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRRYSR 123

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R      +           + +   V  E   +   E +IL  LM+  GK  +  +I
Sbjct: 124 YGGRYSEETEQSIRIGGIELNKETKQIFVDEEEVRITPLEYKILLLLMSYPGKVFSIDEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++       E   V  HI ++R+K+  N      +     +GY  + 
Sbjct: 184 YEQVWKEPAYNPE--TVTVHIRRIREKIEINPKEPRYLKVVWGIGYKFEK 231


>gi|217960300|ref|YP_002338860.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229139497|ref|ZP_04268068.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|217065692|gb|ACJ79942.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644044|gb|EEL00305.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 215

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  ++++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|325660728|ref|ZP_08149356.1| hypothetical protein HMPREF0490_00088 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472802|gb|EGC76012.1| hypothetical protein HMPREF0490_00088 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKACGFPDGTAFMKALAFETPELVLLDIML--PGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + L + ++       +P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  ISLLKKLKSSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELISRVKAVLR 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK--RVAKTQIFS 175
           R K      +     +  D +  EV+ +  P+    +      +  R K   +++ ++  
Sbjct: 119 RTKREEKSTQYEIRNLMLDQKKHEVRVDGIPVTLTLKEFELLELLIRNKNIVLSRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   ++ HI  LR+KL++    D +++ R +GY +
Sbjct: 179 EVWG-YDFDGETRTIDVHIRTLRQKLKSAG--DLIETVRGVGYRM 220


>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY ++
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGYRVE 266


>gi|296394611|ref|YP_003659495.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181758|gb|ADG98664.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G      +            R D+  ++  L   G   +
Sbjct: 8   ILVVDDDVALAEMLTIVLRGEGFDPVVVSDGTKVLPAVRELRPDLVLLDVML--PGLNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR +V
Sbjct: 66  DVCRQVRAESGVPIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +         + +           ++  L   E  +L  L     +   +  +   ++G 
Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRGDQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +      V + R +GY 
Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224


>gi|284044693|ref|YP_003395033.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948914|gb|ADB51658.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +              S   D+  ++  L       ++
Sbjct: 11  LVVEDDDEIAQVLQRSLRMEGYDVRTAGDGVSALDEAHSFLPDLVILDLGL--PKLDGID 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP++ ++   +L++ ++  D+G DD + KP   +E+LAR+ A+ RR    
Sbjct: 69  VARTLRRGDDVPILMLTARDALESRVEGLDAGADDYLVKPFERQELLARLRALLRRRPPR 128

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +        R+  D  +         L +RE  +LEYLM N    +++ ++   ++G +
Sbjct: 129 GSAPLVVGDLRLNPDTHEVHRGERSIELTQREFELLEYLMRNERIVISRQRLLDEVWG-Y 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N +E  +S LR+KL        + + R  GY +
Sbjct: 188 DPFSTTNTIEVFVSNLRRKLEADGEPRLLHTIRGAGYVL 226


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +  S++     E       S   D+  ++           
Sbjct: 4   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLM--MPKLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ +IIR  S +P+I ++    +   ++  D G DD + KP    E+ AR+      +  
Sbjct: 62  EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      +++           +   L + E  +  YL+ N+   V++ +I + ++G
Sbjct: 122 FSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +      + + R  GY +
Sbjct: 182 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 220


>gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
 gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++   S E           D+  ++  L   G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            +    R   + G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYT 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +   +  I V    R   +  +   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STVNVSIEDTLTSSGIHVHFPSRTVNIDEKEINLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRTGYKFE 225


>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
 gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 107/225 (47%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A V D        +G S++   + E    L +    DV  ++  L   G +  
Sbjct: 3   ILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLML--PGIQGQ 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  S+ P++ ++     +  ++    G DD + KP    E++AR+ A++RR  
Sbjct: 61  GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G I       +  V+ +   L ++ER +L+ L+ + G+ +++ +I +
Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++GL +     NVV+ ++ +LR+KL  +     + + R +GY +
Sbjct: 181 TVWGL-NADPLTNVVDVYVGRLRRKLGQEG--QRIVTLRNVGYRM 222


>gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 236

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           +L R ++       +P+I ++        +   D+G DD + KP   RE+    +     
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKVIDANGLMLDPVSQRVSFGNSILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|187935582|ref|YP_001887366.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187723735|gb|ACD24956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 242

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +   ++G  + E    L    +  +  ++  L        
Sbjct: 6   ILVVEDEFSINDTLKFALSKENFEVKGAYNGESALKLLEEFQPHLVLLDIML--PDISGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
           EL + I     V ++   D    +       +         I                  
Sbjct: 64  ELCKSISQKFYVIMLTARDDVIDKILGMEIGADDYITKPFEIREVIARINAIFRTAGKNI 123

Query: 116 --------------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
                               +        I +  + R     GE   L R+E  +L YL 
Sbjct: 124 WNNENNNMIMNVLECNTNDDNKGNTVEDEISINFNTRTVIKDGEEIILKRKEFELLSYLY 183

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+G    + Q+ + ++G +D   +   V+ HI +LR  L        +++   +GY I
Sbjct: 184 KNKGIVFTRQQLLNEVWG-YDYYGDTRTVDVHIRRLRANLGEDKENSVIETVFGVGYVI 241


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G ++              +   D   ++  L       L
Sbjct: 4   ILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLML--PNVDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-----RVAAI 115
           E+ R IR  ++  P+I IS   S    +   ++G DD + KP   +E++A          
Sbjct: 62  EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    +   + +    R   + G+   L  RE  +L +   + G+  ++  +  
Sbjct: 122 AMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
            ++G +     E+ V +HI++LR K+  +    + + +    GY   + N
Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELN 230


>gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     E    L  +   D + ++  L       +
Sbjct: 3   ILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGL--PKLDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R   A   +P++ ++        +  F++G DD V KP    EI+ R+ A I R  
Sbjct: 61  SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      GP+R+ ++G    + G+V  L  +E RIL YLM + GK V++T++   +Y 
Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + NV+E  I +LRKK+    G + + + R  GY +
Sbjct: 181 R-NFDSDSNVLEVMIGRLRKKI----GAEMIQTVRGQGYVL 216


>gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 260

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   +++         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  L+   G+ V+   I
Sbjct: 125 RAQLNSTNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPALI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPTYIKTVYGAGYCLE 232


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +  +     +       ++             D+  ++     +G     
Sbjct: 7   LVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVM--MEGMDGFH 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I ++   +    +    +G DD + KP   +E++ARV A  RR  + 
Sbjct: 65  VCERIRQKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124

Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             R             DGR   V G +  L RRE  +L +L  N G+  ++  +F  ++ 
Sbjct: 125 KIRGRRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A     V++HI  LR KL        +++   +GY  
Sbjct: 184 TDTAASSLRTVDTHIKTLRLKL--NGAGRFIETVWGVGYKF 222


>gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 254

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V     A     G                   R DV  ++  L       LE
Sbjct: 26  LVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPL--MSGLE 83

Query: 63  LPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA      + + S        L   + G DD + KP   RE L RV A+ RR + 
Sbjct: 84  VLRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRRAER 143

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E   +RV +  R   V G    L  RE  +L YL+A+ G    K Q+  
Sbjct: 144 LGAVTLLPKVTERLGVRVDTGSRTATVDGRGVELTTREFDLLAYLIAHPGLTFTKEQLMR 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G      + + V  H+ ++R+K+  +      + + R  GY  
Sbjct: 204 RVWGWD--FGDTSTVTVHVRRVREKIETDPSDPQRIVTVRGAGYRF 247


>gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
 gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
          Length = 247

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++    +      +  S    +  ++  L   G   L
Sbjct: 11  ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIML--PGLNGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110
           E+ R ++     P+I ++   ++   +   D+G  D + KP    E+             
Sbjct: 69  EVLRRLQQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +  R  +        G +++          G    L  RE ++L+ L+ N+   + +
Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + + + G +D   E NVV+ +I  LR K+        + + R +GY I
Sbjct: 189 EVLLNRVCG-YDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVI 237


>gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +        +    D+  ++  L   G    E
Sbjct: 4   LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIML--PGRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +R+++   P++ ++         D FD G DD + KP   R ++AR+ A + R   
Sbjct: 62  VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I + ++  
Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 8   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 66  DIVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 228


>gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
 gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
          Length = 236

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD   +++    L   +G  +   ++ +      S    D+  ++      G+  +
Sbjct: 10  ILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVM--MPGKSGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    VP++ ++           F +G DD + KP  + E++ARV A+ RR  V
Sbjct: 67  LACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172
                      V    RD  +  +   +            E RIL  L  NRGK      
Sbjct: 127 YQGGGNRKEDDVQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+ +++      +  N V  HI  LRKKL  +      + +    GY I+
Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +    +      D+  ++  L       +
Sbjct: 5   ILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVML--PKMSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR K 
Sbjct: 63  EVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S            +           +      L +RE  +L++L+ N+G  +++ +I   
Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD    +N+++ +I  LR K+        + + R +G+  
Sbjct: 183 VWG-FDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225


>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 231

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +I+D   + +     F  +G  +  F + +         + D+  ++  +    G +
Sbjct: 3   LIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAA 114
             +L R  +    +PLI ++   +    +   + G DD V KP   RE+LAR       +
Sbjct: 63  FCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRS 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    + G +++  +  +  ++G+   L   + ++L  L+ ++GK +++  I 
Sbjct: 123 KSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYII 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++  +D+ V +  ++ HI KLR+ L+       + + R +GY  +
Sbjct: 183 EHVW-AWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWE 226


>gi|304407984|ref|ZP_07389634.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343003|gb|EFM08847.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 231

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D  +  D       ++   +    S             +V  ++  L     + + 
Sbjct: 5   LIIEDDNIFGDMLSLYLTEEQYEVTRVPSAGEGLRALQEFAPNVVLLDLML--PDTEGIN 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              ++R  + +P+I IS    +   +     G DD + KP   +E+ AR+ A+ RR  + 
Sbjct: 63  ACAMLRGFTTIPIIVISAETKVSERILSLSEGADDYLCKPFSMQELKARIEAVLRRTNMQ 122

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +          A+   + +    R     G        E  I++ L  N GK  ++ ++ 
Sbjct: 123 SAVIAPPAAPNADEWTLVLDMARRLLICNGNEIETTFSEFEIIKLLYHNPGKVFSREELI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +AI G+ D  + E  ++ HI+ LRKK+  N      + +   +GY 
Sbjct: 183 NAIRGI-DSYINERAIDVHITNLRKKIEQNPKEPQYIKTVWGVGYK 227


>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
 gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 7   ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 67  ARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 E       L   E R+L + M +  +  ++TQ+ 
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAASAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|210631746|ref|ZP_03296988.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279]
 gi|210159866|gb|EEA90837.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279]
          Length = 241

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKG 57
           +++DD   + D     F  +G  +   N         S++R      D+  ++  +    
Sbjct: 14  LVVDDEVEIADMLAEYFRMEGYDVATANDGAAALEAVSASRGGRGAFDIILLDVNMT--N 71

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ R IR H   P+I ++        +D F +G DD V KP     +  RVAA   
Sbjct: 72  MDGFEVCRRIREHLSCPIIFLTARVEDVDQIDGFAAGADDYVLKPFSLEVLGRRVAAHMA 131

Query: 118 RLKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  + +              R  EV G    L + E  ++  L    G+   +  I
Sbjct: 132 REGRARRQEQAVRFFRGLTIDYGSRTVEVAGSPVDLTKLEFDLVALLSKRPGQVFDREAI 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           +  ++G +D A + + V  H+ ++R KL       DP+++   +GY 
Sbjct: 192 YERVWG-WDAAGDPSQVREHVRRIRNKLAAAGLDEDPIETVWGVGYR 237


>gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 237

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +           +      D   ++  L   G   L
Sbjct: 7   ILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLML--PGIDGL 64

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R         P+I  S   S    +   + G DD + KP          + +  R  
Sbjct: 65  EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ R L++         + +    R+  +  +   L  RE  +L +   + GK  ++  +
Sbjct: 125 AMSRNLRMDAGTLSFDGLTIDPIAREVHLNQQTIDLTPREFDLLYFFAKHPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  N    + + +   +GY  
Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGMGYKF 231


>gi|239940925|ref|ZP_04692862.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987401|ref|ZP_04708065.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444359|ref|ZP_06583749.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347306|gb|EFE74210.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 219

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G +       +       +   D+  ++  L   G    
Sbjct: 4   ILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGL--PGRDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P+I ++   S++ T+   + G DD + KP    E+LARV    R   
Sbjct: 62  TVLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRRRTAA 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +    R    +     L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTMLRSGTLALDLRTRRARAEDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LR+KL    G + +++ R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRRKL----GAERLETVRGMGYRL 218


>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 221

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +++        +G  +    +      L          +   L+       +
Sbjct: 5   LLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLL----PQADVVILDLMLPQLTGWQ 60

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R  +  +PL+ ++        +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 61  VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRSGF 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I      R+   +G+   L + E  +L  L  + G   ++ ++   ++G  
Sbjct: 121 KQELVFGDLILR-PRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVWG-S 178

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           D    + VV+ H++ LRKKL  +      +++ R +GY  
Sbjct: 179 DFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRF 218


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 234

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G+++      E         R D   ++  L  +    +
Sbjct: 8   ILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPAR--DGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR HS  P+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 66  SVCQRIREHSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRARG 125

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +     +        + G    L   E  +L+ L    G+ +++ ++    
Sbjct: 126 QAGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMELA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            G  +EA +   ++ HIS+LR+K+ +       + + R  GY 
Sbjct: 186 KGNAEEAFD-RSIDVHISRLRQKIGDDPRHPTRIRTVRGAGYQ 227


>gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 268

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++   +    +G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ I+     +  +  F+SG DD + KP    E+  RV ++ RR  
Sbjct: 65  CQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLLRRTD 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +          +         +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGTNAHHEILSYGPLTLVPERFEVIWFERPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+R   +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|297588607|ref|ZP_06947250.1| DNA-binding response regulator [Finegoldia magna ATCC 53516]
 gi|297573980|gb|EFH92701.1| DNA-binding response regulator [Finegoldia magna ATCC 53516]
          Length = 218

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G         +    +  +   +++ ++  L       L
Sbjct: 3   LLVVEDDKMIREGICEFLSEFGYKTYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P I ++ +   +  ++ F S  D  + KP        R+ ++ ++   
Sbjct: 61  EVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVFKVRIESLIKKYYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++   
Sbjct: 121 NNETFNYKNTEVNFTSYTAKINGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216


>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
 gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 244

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +    + +    D+  ++  L   GE  L
Sbjct: 12  IVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLML--PGEDGL 69

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + R +R A+   P+I ++        +   + G DD + KP + RE             
Sbjct: 70  SICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRRP 129

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V                GP       R     GEV  L   E  +L+ L+ +  + +++ 
Sbjct: 130 VMEAPGAPSREAQSVTFGPFEFDLALRRLTRDGEVISLTTGEFSMLKALVRHPRQPLSRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 190 KLAQLARGR-EFEPFDRSLDVQVSRLRKMIEPDPSQPRYIQTVWGVGYVF 238


>gi|168182818|ref|ZP_02617482.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794261|ref|YP_002861813.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673963|gb|EDT85924.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263864|gb|ACQ54897.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 240

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR  
Sbjct: 69  YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N  E       GP  +     + + +G +  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVENAIEEKNILSFGPFELNMSKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234


>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 234

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  I      G +    +       L  +   D+  ++           
Sbjct: 16  ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIM--MPHLDGF 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + ++ R  S +P+I ++   S    L  ++ G DD + KP   R +LA+  A+ RR   
Sbjct: 74  SVCKMAREMSSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSS 133

Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +                V G+   L  +E  +L + + N G+  ++ Q+ + I+G 
Sbjct: 134 GKTDSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWG- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++HI  LR+KL +      + +    GY  + 
Sbjct: 193 YDFAGTTRTVDTHIKTLRQKLGD--ESRHIVTLIRSGYKFEE 232


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +           + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227


>gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
 gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  ++  ++      +    + DV  ++  L       L
Sbjct: 3   ILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRML--PELDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L + +RA     P++ +S    +   ++   +G DD + KP    E    +  +A    
Sbjct: 61  SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   + +    R     G+   L  RE R+LEYLM+N G+ V +T +   +
Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  ++   + NV++ HIS+LR K+        + ++R  GYS+
Sbjct: 181 W-EYNFDPQTNVIDVHISRLRSKIDKDFNPPLIHTERGAGYSM 222


>gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +    +        +             D+  ++  L     +  
Sbjct: 4   ILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLML--PDMEGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ ++   +  + +  F +G DD + KP   RE++AR+ A+ RR   
Sbjct: 62  RVCQEIRTFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLRRGDD 121

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S           G + + S   +    G+V  L   E ++L  L     +  ++ ++   
Sbjct: 122 SKLLADVIVYHQGRLVINSLKHEVTCDGQVINLTPSEYKLLLLLAKYPQRNFSREELVDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G  D   +  +++ HI  LR+K+         + +    GY  
Sbjct: 182 VLGC-DFIGDIRIIDQHIKNLRQKIEPDSRQPQYIITVYGFGYRF 225


>gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N  G   + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLEV 223


>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 252

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   V +         G  +E          + +    D+  ++  L   G   LE+ 
Sbjct: 2   VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRML--PGLDGLEVC 59

Query: 65  RIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           R IRAH   S VP++ ++     +  ++  D+G DD + KP   RE    +  V      
Sbjct: 60  RRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVP 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V       GP  +    R+    G +  L  RE  +L +L+ N  +   +  +  +++
Sbjct: 120 EAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRSVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G   E  + + V  H+ +LR+K+  +      + +   +GY  
Sbjct: 180 GW--EIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 220


>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G         +      ++   D++ +   L+      +
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTN-PDINLVILDLMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ + +R  S +P++ +S   +    +    SG DD V KP +  E++A      R    
Sbjct: 62  EVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       I          ++G+V  L   E  IL  L ++  +  +   IF 
Sbjct: 122 EVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         +   S++     E      +    D   ++          L
Sbjct: 3   ILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIM--MPKINGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR   +  P++ ++   S++  +   D G DD + KP    E+LAR+  + R+  
Sbjct: 61  QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                     I       +            L  +E  IL Y+  N+G  +++ +I   I
Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   NVV+ +I  LR+K+ +      + + R  GY +
Sbjct: 181 W-NYDYAGASNVVDVYIRYLRRKIDDSYEPKLIHTIRGAGYVL 222


>gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 232

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 8   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVML--PDVNGW 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++RA  + +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 66  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 228


>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
 gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +           +    + D++ I   ++       
Sbjct: 6   ILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENK-DIALIILDVMMPRMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ R +RA SQVP+I ++     +  L  F+ GVD+ +                    R 
Sbjct: 65  QVCREVRALSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKRGRA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +  + G I +       ++      L  +E  +L Y + N+   +++ +I + ++ 
Sbjct: 125 AASEDLIDAGVIVIDKAAHLVKIDDVPIDLSVKEFELLTYFVENQKMALSREKILNNVWD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL  K     + +   +GY  + 
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEKGN--YIKTIWGMGYKFEV 224


>gi|148378962|ref|YP_001253503.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932237|ref|YP_001383344.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936363|ref|YP_001386892.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288446|emb|CAL82523.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928281|gb|ABS33781.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932277|gb|ABS37776.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 240

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IRA S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N    GP  +     + +   E+  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVENANEEKNILSFGPFELNISKAEFKKDREIIELKPKELALITFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 252

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 28  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 86  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 145

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 146 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLITE 205

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 206 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 248


>gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 249

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G  +           L  +A   +  +   L+  G   L
Sbjct: 26  LLVVDDEDAIRETVAVALEEQGYQVLQAADGRQALELVHTAE-RLDLMILDLMLPGLNGL 84

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           +L R++ R  + +P++ ++   S    +   + G DD + KP   R       + +    
Sbjct: 85  DLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRRQ 144

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G I +F+      V+G       +E R+LE  M+N  +   + Q+   
Sbjct: 145 QSHASEATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLER 204

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 205 IWG-SDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 248


>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 264

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 19/230 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 40  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR    
Sbjct: 98  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +      G + V ++G +    GE   L   E R+L    A  G  +++
Sbjct: 158 GGGARQAVEEEAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLSR 217

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 218 DRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 262


>gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
 gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
          Length = 227

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus
           GG]
          Length = 266

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +        +G  L      +       +   DV  ++  L  K     
Sbjct: 37  ILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEK--NGF 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I I+     Q  +     G DD + KP     + AR+ A  RR   
Sbjct: 95  NVLKELRQTKMTPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                  +  +          L  +E R+L+ LM + G   +K 
Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+  ++G      +EN V   I +LR K+++ +    + +   +GY ++
Sbjct: 215 AIYEKVWGES-YIGDENTVNVCIKRLRDKIQD-VNQRYIRTVWGIGYVLE 262


>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +            +E     +           D+  ++  L   G    E
Sbjct: 5   LIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIML--PGVDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR   ++P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREAKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRYQRL 122

Query: 123 NNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N               +    R   + GE      +E  +L +L  +  +   K ++F+
Sbjct: 123 VNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEELFN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 183 KIWDM-ESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGYRF 227


>gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium
           variabile DSM 44702]
          Length = 231

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G  +      E  + L      D+  ++  L       L
Sbjct: 3   ILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGIL--PKVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG-VDDVVNKPI-------HHREILARVA 113
           E+ R +R      L+ +    S             DD + KP          R +  R  
Sbjct: 61  EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +   +       + +  + R+         L R E  +LE L+ N  K +++  I
Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++G +D     N +E +I  LR+K   +     + + R +GY +  N
Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRRKTEAEGEDRLIHTVRGVGYVLREN 229


>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 227

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G      +              D+  ++  L    +   
Sbjct: 5   ILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVML--PNKDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+ S +P+I ++        +   + G DD + KP   RE++ARV AI+RR+  
Sbjct: 63  EICREIRSFSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNF 122

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++A + P    +  +     + G+   L   E R+L+ L++N G+   ++Q+   +Y 
Sbjct: 123 KDDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMY- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +  V +  ++SHI KLRKK++      + + S    GY  +
Sbjct: 182 PDNRIVSDRTIDSHIKKLRKKIKEISPEKEVIYSVYGAGYKFE 224


>gi|83717997|ref|YP_439386.1| response regulator [Burkholderia thailandensis E264]
 gi|257142507|ref|ZP_05590769.1| response regulator [Burkholderia thailandensis E264]
 gi|83651822|gb|ABC35886.1| response regulator [Burkholderia thailandensis E264]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +           G  ++   +      L ++   D   ++  L   G   L 
Sbjct: 4   LVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSL--PGMDGLT 61

Query: 63  LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L R +R       P++ ++   +L   L  F  G DD + KP   +E+ AR+ A+ +R +
Sbjct: 62  LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRYR 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +A      +R+       E  G    +P +   +L  LM    + +   ++ + I+
Sbjct: 122 GQVTQAALCRADVRLDLQTLTVERAGRAVKMPPKCLHLLRILMQTPNRVIGHAELEAEIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   + + + +H+  LR+ L  +   D +++   LGY +
Sbjct: 182 G--DALPDSDTLRAHVYTLRRALTAQGEPDLIETVHGLGYRL 221


>gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system
           with AgrS [Cupriavidus metallidurans CH34]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       +    ++  ++             D+  ++  L   G    
Sbjct: 3   ILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVML--PGMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLK 120
           E+ + +R H   P++ ++    ++  +   + G DD + KP    E+       + R   
Sbjct: 61  EVLKELREHKDTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGPT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R E   + +          G    L  RE  +L +L    G+ +++TQI S ++ +
Sbjct: 121 REAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ +      + S R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKMDDTYAPKLIHSVRGIGYVLE 220


>gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + +         G +++ F + E        +  D+  ++  L        E+
Sbjct: 8   VVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S VP+I +S        +   + G DD ++KP         I   +  + +  
Sbjct: 66  CKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKGP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  E   I+V    R+    G    L  +E      L+    K + ++ I   I+G
Sbjct: 126 TKQDNVIEMFGIKVDFSQRNVFYNGTHIELSPKEFETFALLLKESTKVLKRSYILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  I +LRKK+        + +   LGY ++ 
Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYSLPVEIKTMWGLGYKLEE 227


>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 230

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++      E      +     +  ++  +       +
Sbjct: 5   ILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPL--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S  P+I I+        +   +SG DD + KP    E++AR+ A+ RR+  
Sbjct: 63  EVCNKIREKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRRITF 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +           D    +++G+   L ++E  +L  L ++  K V++  +   I
Sbjct: 123 PESNKMSLIKYESLELDIDNYSVKLKGKNINLTKKEIEVLWMLSSSPNKIVSRDDLLDNI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL     ++  + +   +GY  + 
Sbjct: 183 WGV-DYFGDPRTVDTHIKRIRSKLHLNGQYNWDIKTIWAIGYKFEV 227


>gi|284043027|ref|YP_003393367.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947248|gb|ADB49992.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+         DG  +      +      +    D   ++  +   G   +
Sbjct: 3   ILVVDDEPAVRTALERALRLDGYEVALAADGQEALDALAGVAPDAVVLDLLMPQVG--GV 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVCRRLRAAGDRTPVLMLTARDRIADRVSGLDAGADDYLVKPFALEELSARLRALLRRAG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +         +     +         L R E  +LE L+ +  + + ++ IF  ++G
Sbjct: 121 ADEHDRLRFGDLVLDQAAHEVRRGEREIELTRTEFLLLELLLRHPRQVLPRSVIFEHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 -YDFGSTSNSLEVYVGYLRRKTEAGDEPRLIHTVRGVGYVL 220


>gi|253578483|ref|ZP_04855755.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850801|gb|EES78759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  L++D   +++  I      G   +GF             +  +  ++  L    G  
Sbjct: 1   MIYLVEDDESIRELVIYTLKSQGFEAKGFERPSHFWKALEKEKPALLLLDVMLPEEDGIS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R+     ++P+I ++   S   T+   DSG DD + KP    E+++R+ A+ RR 
Sbjct: 61  ILKKLRMRPDTRKLPIIMLTAKSSEYDTVVGLDSGADDYIPKPFRMMELISRIRALLRRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +                 R    V  +   L  +E  +L  L+ N G  +++TQ+ + ++
Sbjct: 121 EDDGAEEYRTGNLYVCPSRHIATVDKKNVNLTLKEYEVLCLLLKNSGTVLSRTQLLNQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   E   V+ HI  LR+KL +    + V++ R +GY I+
Sbjct: 181 G-YEFDGESRTVDVHIRTLRQKLGSAG--ELVETVRGVGYKIN 220


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + +         D+G  +                  D   ++  L   G   L
Sbjct: 7   IFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLML--PGVDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
           E+ R IR  S   P+I IS   S    +   + G DD + KP    E++        R  
Sbjct: 65  EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ + L++         + +    R+  + G+   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQAL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V SHI++LR K+  +    + + +    GY +
Sbjct: 185 LDQVWG-YQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 231


>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
 gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
 gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 241

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   S +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQV 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAEITFGEFSLDLATREMYHGDEAITLTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +           L       V  ++      G    
Sbjct: 9   ILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVM--MPGMDGF 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E  R+I+   S+V +I ++    +   +     G DD + KP    E+LAR+ A    + 
Sbjct: 67  ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G   +    ++ + +G+   L   E  +L+Y++AN G  ++K+ I   ++G
Sbjct: 127 PMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDKVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE ++  LR KL +K     + + R  GY ID
Sbjct: 187 -YDFGGEENIVEVYVRSLRDKLGDK-EHRLIRTLRGAGYRID 226


>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+L R+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +   ++        +  + D+  ++  L        
Sbjct: 13  LLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVML--PDMDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    + P++ ++     Q  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 71  TVTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 130

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +R+  D  +         L   E ++L YLM N G+ V+KTQI  
Sbjct: 131 GGAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILD 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D + E  +VES+IS LR+K+        + +KR +GY +
Sbjct: 191 HVWD-YDWSGEVGIVESYISYLRRKIDVIGEP-MIHTKRGIGYVL 233


>gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSEALEKNYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G  +  FN+             D++  +  L       +
Sbjct: 5   IYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVML--PELDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + IR  +   P++ +S        +   DSG DD + KP    E+ ARV ++ RR +
Sbjct: 63  SAIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +T  + +         QGE   L  +E ++L YL+ N+ + V + ++ + I+G 
Sbjct: 123 HHSKVIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +      + + R +GY  
Sbjct: 182 YDFVGESRALDVHIRSLRAKLGDDGHH-YIKTIRSVGYRF 220


>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+L R+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVML--PDVDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS++R +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++
Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ D        +  S++     +       SA  DV  ++  L        
Sbjct: 10  ILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIML--PKLDGF 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR      P++ ++   S+Q  +   D G DD + KP    E+LAR+  I R+  
Sbjct: 68  EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNS 127

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +    N  +   + V  +        +   L  +E  ILEY++ N+ + ++K +I   
Sbjct: 128 IKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQH 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           IY  FD  +  NV+E HI  LRKK+        + + R +GY + + N
Sbjct: 188 IYD-FDSEINSNVIEVHIRLLRKKIDTDFTPKLIHTIRGVGYVLKEEN 234


>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         +   +++     E    L  +   D+  ++  L       + 
Sbjct: 4   LLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVML--PKLDGIS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L + +R     +P++ ++   + +  +   D G DD V KP    E+ AR+ A + R   
Sbjct: 62  LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGNT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+       + +  +        +   L  +E  +LE  + N    ++++ I   ++  
Sbjct: 122 SSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D    E  V+ HI +LRKKLRN     D +++   LGY +
Sbjct: 182 ED-PPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRL 221


>gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 241

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G++++  +  +   +L S    D   ++  L       L
Sbjct: 19  ILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRML--PKRDGL 76

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R +    P + +S    +   +    +G DD + KP    E+     +    + 
Sbjct: 77  SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+    G   + + R  GY +
Sbjct: 197 D-YHFDPQTNVIDVHISRLRSKIEKDFGEPLLKTVRGAGYMM 237


>gi|315646885|ref|ZP_07900000.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277815|gb|EFU41139.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 235

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD A +      +   +G+  +    + E         + ++  ++  L     +  
Sbjct: 8   LIVDDEADIVRLLQTVLVKEGIDQVYTAATAEAAWDEFQRCQPEIVILDIML--PDGEGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S VP+  +S        +  F  G DD + KP   +E+  R+ A +RR   
Sbjct: 66  EVCKKIRAVSNVPIFFLSAKAEEIDKILGFAIGGDDYITKPFSPKEVAYRIKARFRRADP 125

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +        P  +  +  + +  G+V PL  +E  +L  L+ + G+ ++K  ++ 
Sbjct: 126 VQLEDKANRLIKVGPFELDEEKVELKKNGKVIPLKPKELGLLTLLLKHPGQIISKESLYD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  +    +N V  H+ +LR+K+ +       + + + LGY +
Sbjct: 186 QVWGE-EFFGFDNTVMVHVRRLREKIEDDPSAPRYLLTVKGLGYKL 230


>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  L             +  + DV  ++          +
Sbjct: 6   ILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVM--MPNMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E    IR     P+I +S        +     G DD V KP          +  L RV  
Sbjct: 64  EACMKIRETEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVRK 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V  +      + + +   +  + GE   L  RE  I+E L  +RG+ ++  QI+
Sbjct: 124 YTHSSSVLEHEMVLDELSINTVTHEVTLAGESVKLTPREFAIVELLARHRGQVLSMEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++         N +  H+ K+R+K+  +      + +   +GY ++ 
Sbjct: 184 EKVWKEQYLE-SNNTLMVHVRKIREKIETDPRKPKYLKTVWGIGYKMEK 231


>gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
 gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
          Length = 227

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + +    R     G    L  +E  +LE+ + +RG+ + ++ I S ++
Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYVLEV 223


>gi|172039329|ref|YP_001805830.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700783|gb|ACB53764.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 248

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +   +E     +    L      D++ ++  L    E   
Sbjct: 21  ILIVDDDPAICQLISRFFSYNNYYIESAVDAKTARQLFQKFNPDLAILDVNL--PDESGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            L + IR    + ++ ++        L+ F+ G DD + KP +   +         R   
Sbjct: 79  NLCKEIRQTGTL-VLMLTCMTDTSHVLEGFEQGADDYLTKPFNLEILKAKIAALLKRRNG 137

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L   NN      + +  +  +  +  EV PL   E  +L +L  +  +   ++ + 
Sbjct: 138 GEVNLNTPNNSVSIEGLTIDPNRCEVSLNHEVLPLTSLEFELLYFLATHPNRVWERSDLI 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +A++G   E   E  V+ HI ++RKK+ +  G   + + R  GY  +
Sbjct: 198 AAVWGNHHEIGAERKVDVHIGQIRKKINDIQG-KLIKTVRGKGYLFE 243


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +        +    DV  ++  L   G    E
Sbjct: 4   LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIML--PGRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +R+++   P++ ++         D FD G DD + KP   R ++AR+ A + R   
Sbjct: 62  VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I + ++  
Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D GVDD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       +D   ++     E    +          ++      G+   
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIM--MPGQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           EL R IRA S VP++ +S        +     G DD + K     EI+ARV         
Sbjct: 65  ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R  +     + G +R+    R+  V G    L  +E  +L     +        Q+ +  
Sbjct: 125 RRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKF 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   D   + + +  H+S+LR+K+         + +   +GY  +
Sbjct: 185 W---DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFE 226


>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQNIRDKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +           + R    + +   L  +E  I+E L  +  +  +K QI+  I
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227


>gi|311033146|ref|ZP_07711236.1| two-component response regulator; MrsR2 protein [Bacillus sp.
           m3-13]
          Length = 236

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G   +    ++       +    ++  ++  L     + 
Sbjct: 6   ILIVDDEKDLCTLIKTALIKEGFSEIRIAGTVNQGWNEFNDFHPNIVILDVML--PDGEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + IR  S+VP++ +S        +     G DD ++KP   +E+  RV A  RR  
Sbjct: 64  YDLCKKIREISRVPVLFLSAKTEEVDKILGLAIGGDDYISKPFSPKEVAFRVKAQLRRAG 123

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +      G   +  +  +    G++  L  +E  ++   M N    ++K
Sbjct: 124 YSTVGASTSNKNEKVISVGSFSINHEETEVMKDGKMLELTAKEVGLMACFMRNPNHIISK 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +F+ ++G  +    +N +  HI +LR+K+ +       + + + LGY  
Sbjct: 184 ETLFNKVWGE-EFYGADNTLTVHIRRLREKIEDTPSKPTYIITVKGLGYRF 233


>gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       ++G  ++   +      + S    D+  ++  L   G    
Sbjct: 3   LLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R + Q P+I ++    ++  +    +G DD + KP    E++AR+  + RR   
Sbjct: 61  GLLAALRQNKQTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAAG 120

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G ++V    R     G+   L  +E ++L  L+  +G+ +++T+I   
Sbjct: 121 TAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NV++  + +LR KL        + + R +GY ++
Sbjct: 181 VWDV-NFDHGTNVIDVAVRRLRSKLDLPFERPLLHTVRGMGYVLE 224


>gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 230

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++ DG        G +++        +   +    D+  ++  L       +
Sbjct: 3   ILLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYDLLILDLGL--PRMNGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA  S  P++ ++    +   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +      R  ++ G++  L  RE  +LE  +   G+ V+K Q+   + G 
Sbjct: 121 GQPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKKL +      + + R LGY ++
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG--VRIVTVRGLGYCLE 218


>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +            +E     E    L  +   D+  ++  L   G    E
Sbjct: 5   LIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIML--PGVDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR    +P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREKKDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYRRL 122

Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +              ++    R   + GE      +E  +L +L ++  +   K ++F+
Sbjct: 123 VSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTFLASHPNRVFTKEELFN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 183 KIWDM-ESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGYRF 227


>gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
 gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G        G  +E   S +  +        D+  ++  L     + L
Sbjct: 4   ILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL-EHGFDLILLDRNL--PDGRGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           +  R +R  ++VP+I ++   +    ++ F +G DD + KP     +  R       +  
Sbjct: 61  DYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V   R   G + V  +     +  E   L   E RILE L+ N+G+ + +  I   
Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+   +  V+EN +  HI +LR+K+  +    + V +   +GY+ 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225


>gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 234

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK--GEK 59
            ++++D A +++  +      G        +          R  +  ++  L G   G  
Sbjct: 6   ILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGDKSGID 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
              + +     S++P+I ++      + +   D+G DD + KP   RE+++R+ A     
Sbjct: 66  FCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRRS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + + +  +   V   +  +   E R+L + M++  +   + Q+   +
Sbjct: 126 SALSGDKPINIGKLTLDAKSQRFMVGDNIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  +E+  ++ H+ +LR  LR       + + R  GY  
Sbjct: 186 WG-GNVYIEDRTIDVHVKRLRTLLRPYDCDTLIQTVRGTGYRF 227


>gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824]
 gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +    +        ++ +  +  ++  L       +
Sbjct: 4   ILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVML--PDIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    VP+I +S        +    +G DD + KP +  E + RV  + RR  +
Sbjct: 62  EVCRKIREKLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTYL 121

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + R     +                  +      L   E  IL+ L  N+G+  +  +I
Sbjct: 122 FDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  ++         N V  HIS LR K+  K  G   + +   +GY I+
Sbjct: 182 FETVWKEK-YFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGYKIE 229


>gi|322516470|ref|ZP_08069390.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322125016|gb|EFX96425.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 217

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G  +           L      D+  ++  L       L
Sbjct: 3   ILIVEDEVLIREGMSDYLMECGHEVFETGDGHEALDLFYREMPDLVLLDIQLPI--LNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++ +      L  F    D    +      +L        +   
Sbjct: 61  EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLRVRIEAIFKKLQ 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++   
Sbjct: 120 PSRVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215


>gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + +P    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++      L  +A  D+  ++           
Sbjct: 5   IMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVM--MPQVDGW 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++    +   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKS 122

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + + +  I         D R+    G    L  +E  +L   M N  + + +  I  
Sbjct: 123 DKIDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D + E NV+E +I+ LR+KL        + + R  GY +
Sbjct: 183 KIWG-YDFSGESNVLEVYIAMLRQKLEEGGAKRIIQTVRGTGYVL 226


>gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 230

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +           G      ++ E           D+  ++  L   G   
Sbjct: 5   MLLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVML--PGIDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R IR +      P+I ++        +  F+ G+DD V KP   RE++ R+ AI++
Sbjct: 63  FEVCRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFK 122

Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +    R           V        ++G    L   E ++L  L+  +G+  ++ ++
Sbjct: 123 RDRRHGGRVPEQLRAGTLDVDLVRHLVTLEGRELLLTLMEFKLLAALLKRKGEAQSREKL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D ++    +++HI++LR+KL        + + R  GY  +
Sbjct: 183 LSDVWDV-DRSINTRTIDTHITRLREKLGETG--RMIKTVRGFGYKFE 227


>gi|293395322|ref|ZP_06639606.1| two component response regulator IrlR [Serratia odorifera DSM 4582]
 gi|291422006|gb|EFE95251.1| two component response regulator IrlR [Serratia odorifera DSM 4582]
          Length = 225

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +     +       D   ++  L   G    
Sbjct: 5   ILVVEDDTSTGDYLKKGLEEAGYRVDLARNGTDGLFRALEHGYDAIVLDVML--PGLDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S VP++ ++    +Q  +   + G DD + KP    E++ R+  + RR  V
Sbjct: 63  QIIEVLRKKSDVPILFLTARDGVQDRIHGLELGADDYLIKPFSFTELVLRLRTLLRRGTV 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +    R    Q +   L  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 123 READHYAIADLHIDVLRRKVVRQEQTITLTNKEFMLLHLLVRREGEVLSRTMIASQVWDM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+        + + R +GY  +
Sbjct: 183 -NFDSDTNVVDVAIKRLRAKIDRPFAVKLIHTVRGIGYVCE 222


>gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens
           CN-32]
 gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella putrefaciens CN-32]
          Length = 226

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLML--PHVDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R IR  ++  P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 65  EICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ + +++         + +    R+  ++GE+  L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +    + + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGYKF 231


>gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  LV D   A    +   +    +      +    + D   ++  L     K  
Sbjct: 3   ILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDFVILDLML--PDMKGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S V L  ++   SL+  +   + G DD + KP   RE++AR+  + RR+  
Sbjct: 61  EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMNG 120

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                              R  +VQ E+ P    E  +L  LM N+GK + + Q+ + I 
Sbjct: 121 PLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQIL 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G FD    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 181 G-FDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222


>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +                  DV  ++           
Sbjct: 4   ILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIM--MPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R   
Sbjct: 62  SSYKEIKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N         ++   GR   V GE   L  +E  +L +L+ N    +++  + + ++G
Sbjct: 122 TTNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   ++  V++HI  LR  +++      + + R +GY  D
Sbjct: 182 -YDFFGDDRTVDTHIKMLRNSIKDY--RKFIVTVRGVGYKFD 220


>gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15]
          Length = 239

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++     F + G  ++  +      +L       +  ++  L   G    
Sbjct: 19  ILLIEDNQRTQEWVTQGFSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 233

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLPGKSGISF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     E       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|145301166|ref|YP_001144007.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853938|gb|ABO92259.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +         R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFPLGQPLLTRLEQTRPDFLILDVGL--PDISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +RA    PL+ ++        L   + G DD V KP   RE+      +  R  
Sbjct: 63  FELCKQVRARCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-CARVRVILRRS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  +  + +  +       G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 122 QPVATQPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSG 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 182 AEESLD-RTVDTHIKTIRAKLRERDADANLILTHRGLGYSLE 222


>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 234

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   ++D        +G  +      +   WL +    D+  ++  L  G G ++
Sbjct: 4   ILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGIEL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           L   +   A   +P+I ++     +  +   D G  D + KP   +E+    R    +  
Sbjct: 64  LSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRHTE 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N++   G + +  D R   +  +V  L   E ++L++ M +  +  A+ QI   I+
Sbjct: 124 DDDVNHQLRVGDLVLELDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQHIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           G  +  V+   V+  I +LRK L++      + + + R  GY  
Sbjct: 184 GN-NACVDARTVDVSIRRLRKTLQSAHPVYSELIQTVRGTGYRF 226


>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +  F+  +      +  +  +  ++  +       L 
Sbjct: 5   MLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMV--PRMDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL   
Sbjct: 63  ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLRRLDRK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +        R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I     
Sbjct: 123 SEPESNDLFRMDKSQQRIWYQQKALNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             V + V++SHI  LR+K+ +        + + +   +GY  ++
Sbjct: 182 FDVADRVIDSHIKNLRRKISDAAETGNRHEWIQAVYGVGYRFEY 225


>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  +              +   DV  ++      G   L 
Sbjct: 13  LVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIM--MPGMDGLG 70

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R      P + ++   S++  +     G DD V KP    E++AR+  + RR   
Sbjct: 71  LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSGF 130

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 T           +  +    GE+  L   E  +L Y M N G  ++K +I   +
Sbjct: 131 GQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 191 W-HYDFGGDVNVVESYVSYLRRKV-DTGEPRLIHTLRGVGYVL 231


>gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        +G  ++   ++             D+  ++  L       
Sbjct: 6   IMLVDDEPDILDLLDKALTIEGYCNITKIDNGLSAINTCKEINPDIIVLDVML--PDIDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S  P++ +S        +     G DD V KP   +EI  RV A  RR +
Sbjct: 64  YEVCKKIREISHCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQLRRAE 123

Query: 121 VSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N  +   +      + +DG       +   L  RE  IL+YL  N G+ +++ +++ 
Sbjct: 124 YKYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRERLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G  D    +N +  HI  LR+KL +       + + + LGY +
Sbjct: 184 TVWGE-DSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKL 228


>gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 260

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  L+   G+ V+   I
Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPALI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              ++G ++   +   +  HI  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 260

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  L+   G+ V+   I
Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPALI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              ++G ++   +   +  HI  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
           [Thiomonas sp. 3As]
          Length = 244

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +         G       S E    +      DV  I+  L    G  +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR  
Sbjct: 67  ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +         P    +  + P  +     L   E ++L YLMA+  +  ++  +
Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G     +EE  V+ HI +LR+ L      + V++ R  GY  
Sbjct: 187 LDKVWGDH-VFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232


>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            ++  +  E  E +       +  ++  L   G+   
Sbjct: 4   ILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVML--PGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKAIRKEKNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYDR 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                            ++    R   V  E      +E  +L +L +N  K  +K ++F
Sbjct: 122 LVASTVPQNDVLEIRGLKIDKTARRVFVNNEEKVFTTKEFDLLLFLASNPNKVFSKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 RNIWDM-ESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRF 227


>gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 10/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A + D        DG  +              S R    A++  L   G+  +E
Sbjct: 12  LIAEDDAAIADLVSMYLRRDGFGVRVETDGVGALTAIRSVRPVAVALDIGL--PGKDGIE 69

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++        L   + G DD + KP   RE+ ARV  + RR   
Sbjct: 70  LCTELRAAGDWTPVLFMTARDDEVDRLLGLEIGADDYITKPFSPRELTARVRTVLRRASG 129

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G +R+    R          L   E  +L  LM N G+  A+ Q+ SA++
Sbjct: 130 GSAATEALTVGAVRLDPARRRVWAADAEVELTVTEFDLLASLMRNPGQVFAREQLLSAVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G    A     V+ HI++LR KL +     P+ + R +GY
Sbjct: 190 GYTASAG-TRTVDVHIAQLRGKLGDHS---PIRTVRGVGY 225


>gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 253

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD          +   +G  +E  ++      +      D+  ++           
Sbjct: 29  ILVVDDDRFANTLVQFVLSKEGYEVETADNPRGALQMIQKREPDLLILDV--TMPYINGF 86

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    ++A    +PLI ++   +++  L  F+ G DD + KP +H+E++ARV A+ RR+K
Sbjct: 87  EFSAKLKAEGYEIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIK 146

Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S             +    E        +   L   E  +L  LM + G+ V + Q+ +
Sbjct: 147 KSGKTGNQSIRGGQIELFPAELKVAVTGKQPVTLTPTEMHVLRVLMHSAGQVVNRDQLLA 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++   D     N+V+ +I +LR KL +       + S R +GY  
Sbjct: 207 EVWN--DNENNSNIVDVYIRRLRVKLEDDPDKPLYILSVRGVGYKF 250


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +      +    +      D+  ++  L       +
Sbjct: 5   ILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVML--PKMSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR K 
Sbjct: 63  EVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S            +           +      L +RE  +L++L+ N+G  +++ +I   
Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD    +N+++ +I  LR K+        + + R +G+  
Sbjct: 183 VWG-FDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225


>gi|116749438|ref|YP_846125.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698502|gb|ABK17690.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++G +++     E    +      D+  ++  L       +
Sbjct: 3   LLVVEDEKKVASFIRKGLEEEGYAVDVALDGEVGLQMAMDRVHDLIILDIQL--PRLSGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA     P++ ++   +++  +   D+G DD + KP   RE++ARV A+ RR  
Sbjct: 61  ELLRSLRAKRISTPVLLLTVRATIEDKVLGLDAGADDYLTKPFSFRELVARVRALLRRRA 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+                      E   L  +E  +L+Y M N  + + +T I   ++ 
Sbjct: 121 ESSQTELRVADLTLDPVRHTVSRGSEKIELTAKEFALLDYFMRNPDRVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +++ LR+K+ +      + + R +GY +
Sbjct: 181 -YDFDSMTNVIDVYVNYLRRKIDSDREPKLIHTVRGVGYML 220


>gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +G  +E     +  E        D+  ++  +    G ++
Sbjct: 6   IMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPAISGIEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               ++     ++P+I ++        +    +G DD + KP    E +ARV A     +
Sbjct: 66  CRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRRAK 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V +   + G I +  +      +     L   E R+LE++M + G+  +++Q+   ++
Sbjct: 126 PEVLSTVLKVGDIVLDREAHRVYRRKNEIHLGPTEFRLLEFMMQHPGRVFSRSQLLDNVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G     ++E  V+ H+ +LRK +      D + + R  GY+I  N
Sbjct: 186 GETIY-IDERTVDVHVGRLRKAVNQGRMPDVIRTIRGAGYAIREN 229


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  +    DV  ++  L        E
Sbjct: 4   LVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLML--PSLDGFE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ +S   ++   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRGAH 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +R+   GR     G    L  +E  +LEYLM + G+ + +T I   ++  
Sbjct: 122 ERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F      NVV+ +++ LR+K+    G   +++ R  GY +
Sbjct: 181 FAYDGTSNVVDQYVAYLRRKIDKPFGTSQLETVRGAGYRL 220


>gi|255280412|ref|ZP_05344967.1| phosphate regulon response regulator PhoB [Bryantella formatexigens
           DSM 14469]
 gi|255268877|gb|EET62082.1| phosphate regulon response regulator PhoB [Bryantella formatexigens
           DSM 14469]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D   +++       + G S+E F   +      S  + D+  ++  L    G +
Sbjct: 3   LIYILEDDKNIREIESYSLKNSGYSVEEFEYAKPFWNKVSERKPDLVLLDIMLPDSDGVE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           VL+  R      +VP++ ++   S    +   D+G DD + KP    E+++RV A     
Sbjct: 63  VLKKLRRNPETKKVPVVMVTAKSSEIDKVKGLDNGADDYITKPFGVMELISRVKAVLRRV 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I + ++ R   V      L  +E  +L+  + N G  +A+  I   +
Sbjct: 123 NQMEEEKLMRLHEIFMDNEKRMVYVSDVPCELTYKEFELLKLFLQNAGIVMARESIMERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ D   E   ++ HI  LR+KL        + + R +GY I+
Sbjct: 183 WGV-DFEGESRTLDMHIKTLRQKLGVAG--KYIKTVRNVGYRIE 223


>gi|225572220|ref|ZP_03781084.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040282|gb|EEG50528.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM
           10507]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +G       +   ++  +S+E      +     +  ++  L        
Sbjct: 4   ILLVEDDLLLSEGISYALRKESYLVDCADSIEKAWECLNKG-PSLVLLDVNL--PDGDGR 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R+ ++VP++ ++   S +  L+ FD+G DD + KP     +  ++  + + +  
Sbjct: 61  EFLKRLRSANKVPVVFLTARDSEKDMLEGFDAGCDDYITKPFPISVLSRKIGLLLKGVAY 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G        ++  +Q     L   E R+LEY + NRG+ + + QI   ++  
Sbjct: 121 LDKSLYYQGDFVYDYAKKELTIQNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDS 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++  V+E  +  ++ +LR+K+  +      + +   +GY 
Sbjct: 181 YENFVDERTLNVNVRRLREKIEKDPKNPRYIVTMFGIGYK 220


>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D       ++G       + +    +      D+  ++      G   +E
Sbjct: 23  LVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIM--MPGLDGME 80

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA     P++ ++   +++  +    +G DD V KP +  E++ R+  + RR   
Sbjct: 81  LLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHVA 140

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A+            +  + E  G    L  +E  +L YLM N  + ++K QI   +
Sbjct: 141 AIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     +VVE +IS LRKK+ +      + + R +GY+I
Sbjct: 201 WS-YDFGGNGSVVEIYISYLRKKIDSLGEP-LIHTVRGVGYTI 241


>gi|257066704|ref|YP_003152960.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798584|gb|ACV29239.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 237

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        DG  +           + +  + D+  ++  L        
Sbjct: 6   ILIVEDEKTISDIVKNYLIKDGYHVFQAFDGVKALEIFNEEQIDLVILDLMLPM--LSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQVP+I  S        +     G DD V KP  ++E++ RV A+ RR++ 
Sbjct: 64  EVLKDIRNKSQVPVIITSAKVEEFDRIQGLRLGADDYVTKPFSNKELVERVKAVLRRIEK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N                               L + E  I++ L ++  K   + +I  
Sbjct: 124 YNIPRADIIKTNDGRLLMDLKYNRFLKDGREISLTKNEFSIVKTLFSSPNKIFTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +GL D    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 184 LTFGL-DYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R  RA     P+I  S   S    +   + G DD + KP          + +L RV 
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +  K+         + +    R+  V G+   L  RE  +L Y   + GK  ++  +
Sbjct: 125 ALAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +    + + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231


>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++   A    +G  +   +          ++  DV  ++  L   G   LE
Sbjct: 7   LVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVML--PGYDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115
           + R ++A   VP++ ++        L     G DD ++KP            +L R    
Sbjct: 65  VCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADRA 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +    +    G I V    R      +   L R E  +L Y  +     +A+  + +
Sbjct: 125 QETVPAERDGLSVGDIEVDLVERRVRRGVDEIHLTRTEFDLLAYFASRPRAAIARESLLA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  D A     V+SH+  LR+KL    G D + +   +GY++D 
Sbjct: 185 EVWGWGDGAG-SRTVDSHVKALRRKL----GGDLIRTVHGVGYALDV 226


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++             +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+         R + 
Sbjct: 62  EICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G F
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 248

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +              L   ++      +       +  I+           
Sbjct: 21  ILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVM--MPYIDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
            +   IRA S VP+I I+        +  F+ G DD + KP    E+             
Sbjct: 79  TVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + ++     G + +        + GE   L   E  +L +L AN G+   +  +F  
Sbjct: 139 YQHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   + N+V+  + +LR+K+         + + R +GY +
Sbjct: 199 VWG-YEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKL 242


>gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 624

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+              ++     E    L +    D+  ++  L       +
Sbjct: 3   ILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVIL--PKLDGI 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +R      LI  ++   +    +   D+G DD V KP   +E+ AR+ A + R  
Sbjct: 61  SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G + +     +         L  +E  +L+  + N  +  ++  I   ++ 
Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              +  EEN ++SHI  LR+KL+      D +++   +GY +
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRL 222



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +           G++L+      +     +    D+  ++A +    G ++
Sbjct: 500 IMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIEL 559

Query: 61  LELPRIIRAHSQVPLIGISDY 81
            ++ R       +P++ + D 
Sbjct: 560 CQVVRNDPCWKLLPVVFVVDN 580



 Score = 42.3 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
           + ++I +   V +G +    + G+ ++   +L     +  S   DV  ++  +   
Sbjct: 354 LLLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDIEED 409


>gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 246

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++         G  +      +      +S+  D+  ++  L   G+    
Sbjct: 17  LVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHVDLIVLDVML--PGDDGFT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR +S+VP+I ++        +   + G DD + KP   RE+ ARV A+ RR   S
Sbjct: 75  LCRQIREYSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKALLRRASFS 134

Query: 123 NNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +                         +   L   +  +L+  +++  + + +  I    
Sbjct: 135 RSDNPRYVDFDRWRLDTLAHELIDENQQGTALSGADFALLQLFLSHPNEVLDRDTISDVT 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            G  +    + VV+  +S+LR++L ++      + + R  GY +
Sbjct: 195 RGR-ESMPLDRVVDVAVSRLRQRLGDQGRNPRLIKTVRGAGYLL 237


>gi|254824434|ref|ZP_05229435.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|255520946|ref|ZP_05388183.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|293593670|gb|EFG01431.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYDAFFKDEYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R  +
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|254410123|ref|ZP_05023903.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183159|gb|EDX78143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 222

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            +  S   D+  ++  L   G+  L
Sbjct: 4   ILIAEDEPRIASFLEKGLRAKGFTTSVAIDAGETLDMALSHEFDLLIMDLGL--PGKDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           ++   +R    Q+P+I ++    ++  +   + G DD + KP         +  R+   +
Sbjct: 62  QVLEELRGQGEQIPIIILTARDDIRDKVAGLEGGADDYMTKPFRFEELLARVRLRLRNNH 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +    R   V+G+   L  RE  + E L+ + G+ +++ Q+ S 
Sbjct: 122 LPKTKEEMVLTIGHVSLDLRTRRVRVKGQRVELSAREFTLAETLLRHPGQVMSREQLLSH 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ +I  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYIGYLRKKL----GSDLIETVRGMGYRL 220


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            +E     +    L      D+  ++  L       +
Sbjct: 3   LLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLML--PKLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  +  R      P++ ++        +   D+G DD + KP + +E+LARV A+ RR  
Sbjct: 61  QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S+           +              L  +E  ILE  + NR +  +++ +   ++ 
Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            FDEA  EN V + I  LR+KL+      + +++   LGY ++ N
Sbjct: 181 -FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224



 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   +           G S+      +    +      D+  ++  +    G ++
Sbjct: 500 IMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIEL 559

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            ++ R       +P++ +S +   +   + F +G DD + KP
Sbjct: 560 CQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKP 601



 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D+  ++    +      G+  +    +   +   + +R DV  ++     + E  L
Sbjct: 375 LLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEICL 434

Query: 62  ELPRIIRA-HSQVPLIGISDYPS 83
           EL + IR     +P +  SD  +
Sbjct: 435 ELLKDIRQLIPPIPTVITSDQNN 457


>gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PEMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLKRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEVDLIRRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNTYEKKLIHTIRGMGYVLE 220


>gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 243

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + + +DD  L       L  ++G  +E                 D+  ++  L       
Sbjct: 7   LILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALEQRTPDLILLDVQL--PRMDG 64

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             L + I + + ++P+I ++    +Q  L   +SG DD V KP    E++ARV ++ RR 
Sbjct: 65  FTLLKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPE------VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      I       +          GE   L   E RIL+ LM++  + V++  +
Sbjct: 125 NRQLAATMDMLIVENGIELNIPDLTAKLPSGEKVTLTPMEMRILQRLMSSPNRVVSRDDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                G +      N ++ +I ++RKKL +       + + R  GY  
Sbjct: 185 AMYAAG-YVADTSSNQIDVYIGRIRKKLGDDPNDPKYIATIRGSGYKF 231


>gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 242

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                     +  +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 46P47B1]
 gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 103P14B1]
 gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 12P80B1]
 gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC8]
 gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC1]
 gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC7]
 gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis CO72]
 gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis O35E]
 gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 101P30B1]
          Length = 230

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59
            ++++D   + +            +      +         + D+  ++  +     G  
Sbjct: 5   ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGID 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                +   A + +P+I ++        +   D+GVDD + KP   RE+++RV A+ RR 
Sbjct: 65  FARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRRT 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAI 177
            +   +       +  +     V      +     E R+L + + +  +   + QI  A+
Sbjct: 125 GIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDAV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  ++E  ++ HI +LRK L        + + R  GY  
Sbjct: 185 WG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 226


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +  S++     E       S   D+  ++           
Sbjct: 9   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLM--MPKLSGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ +IIR  S +P+I ++    +   ++  D G DD + KP    E+ AR+      +  
Sbjct: 67  EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      +++           +   L + E  +  YL+ N+   V++ +I + ++G
Sbjct: 127 FSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +      + + R  GY +
Sbjct: 187 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 225


>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
 gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
          Length = 241

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D  +      G +    +       +  S   D+  ++            
Sbjct: 24  LIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVM--MPHLDGFS 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + ++ R  S +P+I ++        L  ++ G DD + KP   + +LA+  A + R    
Sbjct: 82  VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G I V        + G+   L  +E  +L +LM N G+  A+ Q+ + I+G +
Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWG-Y 200

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D       V++HI  LR+KL ++     + +    GY  + 
Sbjct: 201 DFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 239


>gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G         +       +   D+  +   ++      +
Sbjct: 3   ILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTI-PDIELLILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K+
Sbjct: 62  QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V +   + +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|293189576|ref|ZP_06608295.1| DNA-binding heavy metal response regulator CopR [Actinomyces
           odontolyticus F0309]
 gi|292821476|gb|EFF80416.1| DNA-binding heavy metal response regulator CopR [Actinomyces
           odontolyticus F0309]
          Length = 219

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G   E +++           R  +  ++  L        
Sbjct: 4   ILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGL--PDIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR     +P+I ++   S+   +   + G DD V KP    E+LARV    R   
Sbjct: 62  EVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREET 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++       G + +    R   V  E   L  RE  +LE  M N G+ +++ Q+ SA++
Sbjct: 122 PTSSAMTLTRGSLVLDLKTRRACVGEEWVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D     NVV+ ++S LR+K+    G D  ++ R +GY +
Sbjct: 182 GI-DFDGASNVVDVYLSYLRQKI----GKDYFETVRGMGYRL 218


>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 244

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +         G       S E    +      DV  I+  L    G  +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR  
Sbjct: 67  ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +         P    +  + P  +     L   E ++L YLMA+  +  ++  +
Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G     +EE  V+ HI +LR+ L      + V++ R  GY  
Sbjct: 187 LDKVWGDH-VFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232


>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +           + +  +  V  ++      G    
Sbjct: 9   ILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVM--MPGMDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R + +   +I ++    ++  +     G DD V KP    E+LAR+ A  R   
Sbjct: 67  EVCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQF 126

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +                ++     +V  L   E  +L+YL+ N G  ++KT I   ++G
Sbjct: 127 PALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE +I  LR+KL ++     + + R  GY +D
Sbjct: 187 -YDFGGEENIVEVYIRSLREKLNDR-EHRLIRTLRGAGYRVD 226


>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 242

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         ++ R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              A+              +    R   V G+   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL +K     + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 236


>gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
 gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
          Length = 227

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++RA +  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
 gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 65  ARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 E       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAAAEGNEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|322805284|emb|CBZ02848.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 240

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILVIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IRA S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +K   N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKKDGELIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  ++G + EG  +         S   D+  ++  L  K     
Sbjct: 6   ILVVEDDREINSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDYDLLILDLMLPYK--SGD 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R+ S +P+I IS   ++Q  LD F  G DD + KP    E+L RV A+ RR   
Sbjct: 64  AVLQELRSFSSLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRRCGS 123

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S  +     ++     V ++ +   V G+   L  +E  ILE LM    K  +K  +F +
Sbjct: 124 SEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANLFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+   + A E+N +  H+S LR KL+      + + +   +GY ++
Sbjct: 184 IWNE-EYACEDNTLNVHMSNLRNKLKAADPETEYIKTVWGMGYRMN 228


>gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 236

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +++    L   +G  +      E    +      D+  ++      G+  L
Sbjct: 6   ILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMVD-DSIDLIILDIM--MPGKSGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------------REI 108
           ++ +IIR   Q+P++ ++   +          G DD ++KP  H               +
Sbjct: 63  DVCKIIREKYQMPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSLLRRYYV 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                A      ++ +  +    R          +     L   E +I + L+++ G+  
Sbjct: 123 YKGKEAPADDNFITYDVFKVAKDRNEVYSTSSTGEECPLDLSELEYQIFKLLISSPGRIF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
               I+ +I+           +  HI  LR K+  +      + +    GY +
Sbjct: 183 PAQLIYESIWNEPYFYSSNATIMVHIRNLRTKIEEDPSNPRHLLTVWGKGYKL 235


>gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016]
 gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 231

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++                 D+  ++  L       +
Sbjct: 9   ILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVML--PSLNGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S++P+I ++    +   +   D G +D + KP    E+LAR+  +++    
Sbjct: 67  EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 126

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N +          ++         +     L ++E  +L+YLM N+   +++  I   +
Sbjct: 127 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + N+V+ +I  LR K+ +K     + + R LGY  
Sbjct: 187 WG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 228


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +           L +    DV  ++  L   G   +
Sbjct: 27  ILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVML--PGINGI 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  SQVP+I I+   ++   +   D+G DD + KP         I   +     
Sbjct: 85  EICRRVRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   ++       I +     +  VQG    L + E  +L+ L+ ++ +   +  I +++
Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  +E NVV+ +I  LR KL        +++ R +GY +
Sbjct: 205 WG-YDTDIETNVVDVYIRHLRTKLPGDTNA-YIETVRGVGYVM 245


>gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 251

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +   +    DG              L      DV  ++  L       +E
Sbjct: 27  MVVEDEAALANLIGSYLERDGFEATITGDGAEAIALARRIDPDVLVLDLGL--PSLDGVE 84

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++       TL     G DD + KP   RE++AR+ A+ RR + +
Sbjct: 85  VCRQLRTFSDAYVVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPRTT 144

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +                 +GR+  V G    L R E  +L  L  + G  + + Q+  A+
Sbjct: 145 DTARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIGAV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +G  +   +E++V+ HI  LR+KL +       V + R +GY +
Sbjct: 205 WG-PNWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGYRM 247


>gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 233

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+ G        G  +    S E         R D+  ++  L       LE
Sbjct: 5   LLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLML--PNMSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP----------IHHREILARV 112
           + R IR   ++P+I +S        +   ++G DD + KP                +A  
Sbjct: 63  VCRRIRESKRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLRRVAPA 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                R            + V          G   PL   E ++L +L A  G+  ++ Q
Sbjct: 123 QDGGSRDPADAGPERHADLTVDRTTLVVAKHGTELPLAPSELKLLLFLTATPGQVYSRQQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   ++       +  +V++ + +LR ++ +       V + R  GY  
Sbjct: 183 LLEQVW-EHSFYGDVRLVDACVMRLRARIEDDPRKPVYVQTVRGFGYRF 230


>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 233

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       + E           D+  ++  L   G   
Sbjct: 5   LLLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIML--PGIDG 62

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R IR H     +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FEVCRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +      +         V        + G+   L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQRAGLQEVLSAGGLDVDITRHQITLDGKGVILTLMEFKLLVALLKRKGQAQSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            S ++ + D+ +    +++HI++LR+KL        + + R LGY  D 
Sbjct: 183 LSDVWDV-DKTINTRTIDTHITRLREKLGETG--KMIKTVRGLGYKFDE 228


>gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+         +G+ +   +       L  +   DV  ++  L   G     
Sbjct: 6   LVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIML--PGLSGYR 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLK 120
           +   +RA     P++ +S         D  D G D  + KP      +    A + R   
Sbjct: 64  VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R+    G    L  RE  +L  L    G  V+K  +   ++G 
Sbjct: 124 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVWGE 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            D+ V  NVVE ++  LR+KL        V + R  GY 
Sbjct: 184 -DQFVTRNVVEVYVGYLRRKLAAAGAGHLVQTVRGHGYR 221


>gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 227

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++RA +  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ + G + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|239931754|ref|ZP_04688707.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440123|ref|ZP_06579513.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343018|gb|EFE69974.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +       E       +   D+  ++  L        
Sbjct: 4   ILIVEDEERIASFVEKGLRANGFTTTVVPDGEAGYEYALTGGFDLVVLDIGL--PDRDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P+I ++   S++ T+   + G DD + KP    E+LARV    R   
Sbjct: 62  TVLRELRESRVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +    R          L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTVLKSGDLSLDLRTRRARAADRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LRKKL    G + V + R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GAEKVQTVRGMGYRL 218


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|229059543|ref|ZP_04196925.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
 gi|228719826|gb|EEL71420.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
          Length = 229

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++   S E           D+  ++  L   G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVILEDYDLLILDIML--PGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            +    R   + G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++      F D+G ++   ++             D   ++  L G G+  L+
Sbjct: 12  LVVDDDPRIRQMLTRYFEDEGYAVSTASNGLEMRACLQQENFDAILLDWVLPG-GKDGLD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IRA S VP+I ++    +   +   + G DD + KP H RE+ AR+ +I RR + +
Sbjct: 71  LAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQPA 130

Query: 123 NNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +  P  V                   G    L   E  IL     + G+ +++  +
Sbjct: 131 IRSPDKNPDDVIRFEGWQLDTGKRQLLAAEGHEIELTTGEFDILVVFARHAGRVLSRELL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                G   EA +   +++ I++LRKK+  +      + S R +GY  
Sbjct: 191 MDLTRGRNLEAFD-RTIDAQIARLRKKIETDPARPQLIKSIRGVGYVF 237


>gi|254390598|ref|ZP_05005812.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812195|ref|ZP_06770838.1| Two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440649|ref|ZP_08215383.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704299|gb|EDY50111.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324794|gb|EFG06437.1| Two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 220

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +       +       +   D+  ++  L   G    
Sbjct: 4   ILIVEDEERIASFVEKGLRANGFTTTVVGDGDSAFDYAVTGGFDLIVLDIGL--PGRDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     VP+I ++   S++ T+   + G DD + KP    E+LARV    R   
Sbjct: 62  TVLRQLREARVSVPVIILTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R          L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTVLRNGELSLDLRTRRARSGERTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LRKKL    G   V++ R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GAGRVETVRGMGYRL 218


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++G +++     E  E+L      D+  ++  L    +  L
Sbjct: 3   ILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLML--PKKNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++   S++  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +         +    R    QG    L  +E  +LEYLM N GK +++T I   ++ 
Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   E NV++ +IS LR K+        + + R  GY +
Sbjct: 181 M-NFDPESNVIDVYISHLRSKIDKGFDVSLLHTLRGQGYLL 220


>gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|315646998|ref|ZP_07900112.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277650|gb|EFU40975.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G  +           L       +  ++  L       + 
Sbjct: 7   LIVDDDKEIRDVLHVYLRNEGYHVLEAEDGLQALQLLQQHEVQLIILDVML--PKLDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
               IR  S +P+I +S        +    +G DD V KP H  E++ARV A  RR    
Sbjct: 65  ACLQIRERSAIPIIMLSAKVESLDKITGLSTGADDYVTKPFHPVELMARVKAQLRRQNFL 124

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + +       +V+G    L   E  ILE L ANRG+  + ++I   
Sbjct: 125 SLREEEPSEIHIGDLSIHKKQHLVKVRGAAVSLTPIEFSILELLAANRGQIFSVSKIHEC 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        +N V  HI  +R+K+         + +   +GY I+ 
Sbjct: 185 VWKEQTPFFSDNTVMVHIRNIREKIELVPRKPQYIKTVWGVGYKIEK 231


>gi|315037993|ref|YP_004031561.1| Response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312276126|gb|ADQ58766.1| Response regulator [Lactobacillus amylovorus GRL 1112]
          Length = 240

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A     +                         V  L  +E  +L  +     +  
Sbjct: 125 MEEKPALLQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
 gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++      +    +      ++  ++          L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+         R   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +++ ++N      + +        +      L  RE  IL  L  NRG+  +  +IF
Sbjct: 123 LNTKMQTTDNIIRIESMVIDKKQHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEKYMEGSKVIHTVWGVGYKIEK 230


>gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
 gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
          Length = 232

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 5   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++   +R+     P+I ++    ++  +  F+ G +D V KP        R        I
Sbjct: 63  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHI 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 123 SAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +   + NV++  + +LR K+        + + R +GY ++ 
Sbjct: 183 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 228


>gi|332185060|ref|ZP_08386809.1| response regulator [Sphingomonas sp. S17]
 gi|332014784|gb|EGI56840.1| response regulator [Sphingomonas sp. S17]
          Length = 236

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        ++G +++  N+           + D+  ++  L   G   +
Sbjct: 6   ILIVEDDPALRTLTARALQENGFAVKLANAAPEMWQALEVGQIDLILLDIML--PGTSGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R  + VP+I IS   S    +   + G DD + KP   RE++AR+ A+ RR  +
Sbjct: 64  DLCRQVRQRNAVPIIFISAKGSEVDRVVGLELGADDYLPKPFSTRELVARIRAVLRRGGL 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
            N   E     +  DG    +              L   E  +L   + N  + VA+ ++
Sbjct: 124 ENAPGEREAGILGFDGWTANLPRRELMSPSGAQVELTGAEFDLLVAFLDNAQRVVARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                        +  ++  +S+LR+KL    G  P+ + R +GY ++ 
Sbjct: 184 IELSRARIG-DSSDRSIDVLVSRLRRKLSGAGGAAPIVTVRGVGYMLNV 231


>gi|162453349|ref|YP_001615716.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163931|emb|CAN95236.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
          Length = 235

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   ++          G  +           L    R D+  ++  L    G +V
Sbjct: 4   ILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQRPDLVLLDLMLPDIPGTEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
               +      ++P++ +S        +  F+ G  D V KP   RE    +  V    +
Sbjct: 64  CRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVLRRAK 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G +R+        V+ E   L   E ++L  L   R +   +T +   +
Sbjct: 124 SSGDGERSIEFGCLRIDEGAHRVWVEREEVELTLLEFKLLVALYEARERVQTRTALLDGV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D ++    V++H+ +LR KLR     D + + R +GY  
Sbjct: 184 WGI-DVSITTRTVDTHVKRLRDKLRRAG--DYIQTVRGIGYRF 223


>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + +    R   +      L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A +++ + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231


>gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
 gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
          Length = 230

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++   +R+     P+I ++    ++  +  F+ G +D V KP        R        I
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHI 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 SAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +   + NV++  + +LR K+        + + R +GY ++ 
Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 226


>gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 234

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              I+D   + +G       +G  +  F++        +  + D+  ++  L       L
Sbjct: 4   IFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAIAERQPDLVLLDWNL--PDGDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
            L R I   + VP++ I+        +   +SG DD +     +   +         R  
Sbjct: 62  ALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRRRGG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S+    +G IR+        ++     L   E ++L+Y + N+ + + K QI + ++ 
Sbjct: 122 QDSSGWLISGDIRLQEKEMKAYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
                VEEN +  +I +LR K+  +      + +   +GY  +
Sbjct: 182 SGGSFVEENTLMVNIRRLRTKVEEDASHPRYIKTVHGMGYLWE 224


>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 233

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG S+    + +    L  S   D+  ++  L        
Sbjct: 8   IIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLE--DMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            + + IR     P+I ++        +     G DD + KP +          ++     
Sbjct: 66  SVCKKIREKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N   +   + +        +  +   L   E  I+ YL  N+GK V+  ++
Sbjct: 126 YNKTEKIQDNETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  I+         N V +HI ++R K+ +       + +   +GY I+
Sbjct: 186 FENIWKEKYLD-NNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGYEIE 233


>gi|327183273|gb|AEA31720.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 3   ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 63  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 122

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A     +                         V  L  +E  +L  +     +  
Sbjct: 123 MEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVIDLTPKEFDLLYTMAQKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233


>gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
 gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
          Length = 230

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++   +R+     P+I ++    ++  +  F+ G +D V KP        R        I
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +   + NV++  + +LR K+        + + R +GY ++ 
Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 226


>gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
 gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
          Length = 240

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A T                             V  L  +E  +L  +     +  
Sbjct: 125 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016]
 gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 235

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  ++    + E       S    +  ++  L       +
Sbjct: 11  ILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLML--PYIDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S        +     G DD + KP   RE+ ARV +  RR   
Sbjct: 69  EVLRKIRESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      PI  ++D            + +   L  +E ++L+  + N  +   K QIF+
Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++       ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 189 NVW-ENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKL 233


>gi|324326833|gb|ADY22093.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 215

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E ++++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELQLIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V+ G        G S+    + E       + R ++  ++  L   G   +
Sbjct: 4   ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVML--PGIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R IR    +P+I ++        +   ++G DD V KP+  R + AR+ AI  R   
Sbjct: 62  EVCRRIRKIDSLPVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAILRRVES 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  +R   G + +        ++G+   L   E R+L  L+ +R K + +  +   ++  
Sbjct: 122 VPADRLTFGDLVIDRGALKVTLKGKEVHLTPTELRLLLELVRHRDKVLNRRYLLRTVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                +  +V++ + ++R K+         + + R  GY  
Sbjct: 181 HGHVGDSRLVDTCVQRIRAKIEPVPSEPRYIHTVRGFGYRF 221


>gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
 gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
          Length = 248

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 22  ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 80  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                + +     +  + GE   L   E  IL  L+++ G  V+  +
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248


>gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905]
          Length = 225

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       ++G+ +             +S + D+  ++           
Sbjct: 4   LLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKVDMVIMDIM--MPNMDGW 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IR+++   P++ ++        +  F  G DD + KP    E++ RV +I +R +
Sbjct: 62  ALCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ ++              + ++ GE+  L  +E  +L  L +  GK  ++ Q+   I+G
Sbjct: 122 IALSQVVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +E  V+ HI ++R++   ++    + + R LGY ++
Sbjct: 182 -YDYEGDERTVDVHIKRIRERFPQEISGFAIRTIRGLGYRLE 222


>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 244

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   V+          G  +    + +    L SS   D   ++  +    G  V+
Sbjct: 22  LMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAVV 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              R +   + +P+  +S   ++   +   ++G DD + KP    E++AR+         
Sbjct: 82  TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 139

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++    G + + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 140 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  +S LR+KL  +     + + R +GY +
Sbjct: 200 G-YDFDVDTNVADVFVSYLRRKLEREGLPRVIHTVRGIGYVL 240


>gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 246

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +   +S             DV  ++  L   G   +E
Sbjct: 15  LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLAL--PGIDGVE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR +  
Sbjct: 73  VCRQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTV 132

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             GP+ +   GR   +  E   L R E  IL  L +      ++
Sbjct: 133 ATPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSR 192

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            Q+  A++G       +++V+ HI  LR+KL  +  G   V + R +GY +
Sbjct: 193 RQLLEAVWGDS-WGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGYRM 242


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 81/226 (35%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++E     +       S   DV  ++           +
Sbjct: 5   LVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVM--MPKLSGYD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +    +  ++ ++    +   +   + G DD + KP   RE           +R  
Sbjct: 63  VCRRLGDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTP 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +  +  +      + +    R    +G+   L  +E  ++  L  N  +  ++  +
Sbjct: 123 EAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ + D A     V+ H+ +LRKKL N    + + +   +GY 
Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGN--QHEVIQTVYGIGYK 225


>gi|325661025|ref|ZP_08149652.1| hypothetical protein HMPREF0490_00384 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472532|gb|EGC75743.1| hypothetical protein HMPREF0490_00384 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 223

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G         +            +  ++  L        
Sbjct: 4   ILIVEDDETIARLLREHLEKWGYQARCAEDFKQVAKEFKEYAPHLVLMDIGL--PFYNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
                IR  S VP++ +S        +     G DD V KP     +  ++         
Sbjct: 62  YWCTEIRKTSNVPILFLSSMSDNMNIVMAIQMGGDDFVTKPFDLNVLTVKIQALLRRTYA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S +  E   + +         Q +   L + + +IL+ LM   G  V + +I   ++
Sbjct: 122 FQGSASVMEHKGVMLNLSDASVTFQSQKIELTKNDYKILQILMERAGTIVKREEIMQRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE +++N +  ++++LRKKL      + + +K+ +GY I+
Sbjct: 182 -ESDEFIDDNTLTVNMTRLRKKLEELGVQEFIKTKKGIGYIIE 223


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +    +     +G  +   ++              +  ++  L        
Sbjct: 11  ILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVML--PEMSGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R    +P++ ++   S +  +    +G DD + KP    E +ARV ++ RR  V
Sbjct: 69  AVLSELRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +    R   VQ +   L  +E  +L +L  N G+   K Q+
Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           ++ I+   D A ++  + ++ISKLR+K+  K      + +   +GY  + 
Sbjct: 189 YTQIW-QEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFNK 237


>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 239

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +  DD + +          +   +   +  E    +      D+  ++          
Sbjct: 7   VILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVM--MPRVDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
             + + IR  S VP+I I+     +  +   D G DD + KP    E        +    
Sbjct: 65  FTVCKHIREFSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRSR 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     + +  +A  G + +           +   L   E R+L YL  N G+ V   Q
Sbjct: 125 FSASEPGQSARMQASIGELTIDYSQHLIIKGTKELSLTPIEYRLLAYLAQNMGRIVTHDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +   ++G  +   E ++++ +I++LR+KL  +      + +K  +GY
Sbjct: 185 LLEHVWG-SEYIGESHMLQVNINRLRRKLEPDPSHPRYLLTKVGIGY 230


>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
 gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
          Length = 241

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +            + +S + D+  ++  L       LE
Sbjct: 15  LVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIML--PVMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 73  ATKRITAARPVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    E   + +    R   + G+   L   E  +L  L     + + + ++
Sbjct: 133 KVIAKNSENEKVLEFNGLTIDPAQRLVLLNGQEVHLTPTEFDLLATLARKPKQVLTREKL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 193 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSEMIRTVHGVGYAFE 235


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++                 D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLML--PGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+  +           + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +              S  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL        + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGADT----IRTVHGVGYAFE 236


>gi|315647964|ref|ZP_07901065.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276610|gb|EFU39953.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 236

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       DG S    + +   + + +   +  +     L        
Sbjct: 12  ILLVEDDKTIASGLEYSLQQDGFSTVLCHDVASAQRVLAEDIDQFALCLFDLQLPDGSGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           EL ++++    +P+I ++        +   D G DD + KP   RE    +  V   Y++
Sbjct: 72  ELCKLVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   IR+ +       +G   PL   E R+L     + G+ + + Q+   I+
Sbjct: 132 PSHTRAIIDIDHIRINTLEGKVHKKGTEIPLTALEYRLLLIFGNHIGQVLTRNQLLEQIW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  + V +N +  +I +LR+KL +  G    + + R LGY 
Sbjct: 192 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYK 233


>gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 232

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +      E    L       V  ++  L       LE
Sbjct: 10  LVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGL--PRIDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++        +     G DD + KP   RE++ARV A+ RR +  
Sbjct: 68  VCRSLRRFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRRM 127

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + A T        +   GR+  +  +   L   E  +L  L  +     +++Q+  A++
Sbjct: 128 PDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           G      +E +V+ H+ ++R+KL +       V + R +GY +
Sbjct: 188 GAG-WVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGYRM 229


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    +V  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I++    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 223

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 99/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G  ++  N      +        +  ++  L   G    
Sbjct: 3   ILLIEDHLKTQVWVKNGLEEAGFLVDVTNDGRDGLYFALENSYQLVILDIML--PGMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +++     D E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 ASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ ++     +++ R +GY ++
Sbjct: 180 DFESDTNIIDVAIRRLRKKIDDEFDVKLIETIRGMGYRLN 219


>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   V+          G  +    + +    L SS   D   ++  +    G  V+
Sbjct: 26  LMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAVV 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              R +   + +P+  +S   ++   +   ++G DD + KP    E++AR+         
Sbjct: 86  TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++    G + + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 144 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  +S LR+KL        + + R +GY +
Sbjct: 204 G-YDFDVDTNVADVFVSYLRRKLERDGLPRVIHTVRGIGYVL 244


>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 228

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E        +  D+  ++  L    +   
Sbjct: 5   ILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIML--PKKNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           ++ + I+     P+I ++    +   +   + G DD + KP  +RE+        R A  
Sbjct: 63  DVCKEIQQKLDTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRRAKK 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + + +   GP+ +  D R  ++      L  +E  +L  L ++  +   + ++  
Sbjct: 123 ITNADMQSAKIINGPLCIIPDERIVKLDDHEIHLTPKEFDLLLLLASHLEQVFPRDELLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ HI ++R+K+        + +   +GY +
Sbjct: 183 EIWG-YDYYGDTRTVDMHIQRIRRKIDIHPN-KLIQTVFGIGYKM 225


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++        ++  +++     E   +       D+  ++  L       +
Sbjct: 3   ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIML--PKVNGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R   S  P++ ++    +   +   D+G DD + KP    E+ AR+ A   R  
Sbjct: 61  AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K        G + +    +  +   +   L  RE  +LEY + N    + KTQI   ++ 
Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++     N+VE+++  LRKK++      + + + R  GY +
Sbjct: 181 -YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYIL 221


>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 232

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        + ++ D+  ++  L        
Sbjct: 10  ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGL--PDMDGQ 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R  R  S VP++ +S   S    ++  DSG +D V KP   +E LARV A+ R+   
Sbjct: 68  QVLREFREWSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALLRQAPA 127

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 128 GEAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 188 GPTHTE-DSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229


>gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 226

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G + E   + +        A  D+  ++  L    +  L
Sbjct: 4   ILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGL--PDKDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R   + +P+I ++    +   +   + G DD V KP    E+LARV    R+  
Sbjct: 62  QVIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAP 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++       + +    R  +V GE+  LP RE  + E    + G+ +++ Q+
Sbjct: 122 AAGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D +   N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 LDRVWG-YDYSPGSNIVDVYVGYLRKKL----GADLIETVRGIGYRL 223


>gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 245

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++       G +G            + + +  R D+  ++  L   GE  L
Sbjct: 10  LLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIML--PGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L R +RA   VP++ ++        +   + G DD + KP + RE            + 
Sbjct: 68  SLCRRLRAQGDVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQA 127

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           AA         + A  G I            G    L   E  +L   +    + +++ Q
Sbjct: 128 AARVGEDPRRQDIAFGGLIADLDARSVRTPDGIALDLTSAEFDLLACFLERPRRVLSRDQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
           +     G       +  ++  +S+LR++L          + + R  GY  
Sbjct: 188 LLDWTRGRS-ADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIF 236


>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 242

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E     E           D+  ++  L    +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLML--PKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV         
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                     +  +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +      +L       +  ++  L   G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
 gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++    A    +G      N       +      D+   +           
Sbjct: 4   ILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIM--MPNMDGY 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +  A  Q+P+I ++   S +   + F +G DD + KPI   E++ RV A+ +R K
Sbjct: 62  ELTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRSK 121

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++    T    V            G    +P+ E ++L  L++   K   + Q+   ++
Sbjct: 122 LASEHTMTVGSCVLDYDAQTVSIDGGAGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G+ D+ V+E  V+ HI +LR++  +   F  + + R LGY 
Sbjct: 182 GM-DKDVDERTVDVHIKRLRERYGSTDDFS-IVTVRGLGYK 220


>gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +           +      D+  ++           
Sbjct: 4   ILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVCREMEFDIIVMDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR     P++ +S        +  F+ G+DD V KP   +E++ RV AI +R   
Sbjct: 62  SACKEIRKFCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVKRSSG 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +             GR   +  E   +  +E  +  Y++ NRG  + + ++ + +
Sbjct: 122 DKGNKKDIFTIEGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYMVKNRGIALTRERLITDV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 WG-YDFFGDDRTLDTHIKLLRKSLGDYSKN--IVTLRGVGYRFE 222


>gi|254503410|ref|ZP_05115561.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222439481|gb|EEE46160.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 246

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G+      +         +A  D+  ++      GE  L
Sbjct: 12  ILVVDDHRDIRETLARYLVKNGLRATACENASAARKALKAASIDLVVLDIM--MPGEDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +     +P+I ++        +   + G DD V KP + RE+LAR+ A+ RR  +
Sbjct: 70  SLCRHLVETGSMPVILLTAMADDTDRVIGLEIGADDYVTKPFNPRELLARIRAVLRRTSL 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRR---------ERRILEYLMANRGKRVAKTQ 172
                +                                  E ++L   +      + + Q
Sbjct: 130 VPKDRDPIEQDRMHFDGWALNVTRRELTDPDGVAVALSSGEFQLLCAFLKRPKMVLNRDQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +     G    AV +  +++ +S+LR+K+  +      + +    GY  
Sbjct: 190 LMDLTTGRT-PAVFDRSIDNQVSRLRRKIEEDPKDPKLIKTVWGGGYMF 237


>gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 227

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++RA  + +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 231

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++E     +       S   DV  ++           +
Sbjct: 5   LVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVM--MPRLSGYD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R +    +  ++ ++    +   +   + G DD + KP   RE           +R  
Sbjct: 63  VCRKLEDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTP 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +     +      + +    R    +G+   L  +E  ++  L  N  +  ++  +
Sbjct: 123 EAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ + D A     V+ H+ +LRKKL N    + + +   +GY 
Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGN--QHEVIQTVYGIGYK 225


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   +S      +  + R D   ++      G    
Sbjct: 10  ILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVM--MPGMDGF 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
            L R +RA     P++ ++   SL   +     G DD V KP        R  +    A 
Sbjct: 68  GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAG 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + R +   I +  D R+   +GE+  L   E  +L Y M N G  ++K +I  
Sbjct: 128 RGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILD 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 188 HVW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 230


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   +S      +  + R D   ++      G    
Sbjct: 18  ILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVM--MPGMDGF 75

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
            L R +RA     P++ ++   SL   +     G DD V KP        R  +    A 
Sbjct: 76  GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAG 135

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + R +   I +  D R+   +GE+  L   E  +L Y M N G  ++K +I  
Sbjct: 136 RGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 196 HVW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 238


>gi|169350719|ref|ZP_02867657.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552]
 gi|169292582|gb|EDS74715.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G       S             D+  ++  L   G    
Sbjct: 6   ILIIEDNNDINEMIYNYLNKNGFKCYQAYSGTEGLLYCKDDNYDLIILDLML--PGMDGK 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S +P+I ++   SL + ++  + G  D + KP    E+LAR+    R+   
Sbjct: 64  SVLVKIREKSDIPVIVLTAKDSLNSKVEILEIGAYDYLCKPFELEELLARIHVQLRKSNK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N      + + +   D  +  ++  L R E  ILE L+ N  +   K +I++  +   
Sbjct: 124 KTNNMTFKKLTLDNQIYDAIINNQLLQLTRHEYYILELLIQNPKRVFTKQEIYAYAW-ND 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   ++  +  HIS +RKK+  +   D + +   +G+ +
Sbjct: 183 DYLSDDKTINVHISNIRKKISKQTDEDYIKTVWGIGFKM 221


>gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638]
 gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 220

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      ++G +L+   +    + L  S    +  ++  L    +   
Sbjct: 3   LLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGL--PDKDGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L    R      P++ ++   +++  +   DSG DD + KP    E+ AR  A I R  
Sbjct: 61  TLLSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N+   G + +    +          +  +E  +L  L+   G+ V +  +   IY 
Sbjct: 121 GHSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D     N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 181 WQD-DPGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 235

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +        +G  +    + E   W  +    D   +   L   G    E
Sbjct: 4   LVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIML--PGLNGYE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAAP 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T          R      E   L  RE  +LE+L+ N    + K +I   ++  
Sbjct: 122 ARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +EN+VE ++  LR+K+    G   +D+ R +GY +
Sbjct: 182 H-YDGDENIVEVYVGYLRRKIDAPFGAHTIDTVRGVGYRL 220


>gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator,
           winged helix family [Chromohalobacter salexigens DSM
           3043]
          Length = 223

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +   D      G+ G  +E          L   A  ++  ++  L   G    
Sbjct: 3   ILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           EL R+IR H QVP++ ++   +++  +   + G DD + KP    E+LARV   + R   
Sbjct: 61  ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R +   + +    R          L  +E  +L+ L+   G+ +++T I S ++G+
Sbjct: 121 RERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWGM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  + +LR K+ +      + ++R +GY ++
Sbjct: 181 -NFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220


>gi|16081017|ref|NP_391845.1| two-component response regulator YxdK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311939|ref|ZP_03593786.1| hypothetical protein Bsubs1_21391 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316263|ref|ZP_03598068.1| hypothetical protein BsubsN3_21302 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321175|ref|ZP_03602469.1| hypothetical protein BsubsJ_21250 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325459|ref|ZP_03606753.1| hypothetical protein BsubsS_21401 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313531|ref|YP_004205818.1| two-component response regulator YxdK [Bacillus subtilis BSn5]
 gi|1176993|sp|P42421|YXDJ_BACSU RecName: Full=Transcriptional regulatory protein yxdJ
 gi|709991|dbj|BAA03300.1| hypothetical protein [Bacillus subtilis]
 gi|2636512|emb|CAB16002.1| two-component response regulator [YxdK] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291486589|dbj|BAI87664.1| hypothetical protein BSNT_06087 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019805|gb|ADV94791.1| two-component response regulator (YxdK) [Bacillus subtilis BSn5]
          Length = 229

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G              +    + DV  ++  L        
Sbjct: 4   IMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPA--YDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR HS  P+I IS        +   ++G DD + KP  +  +        R A  
Sbjct: 62  YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      E   +++F +  +   Q E   L ++E ++LE L+    K  ++ ++  
Sbjct: 122 EYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLME 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   D  +++N +  +I++LRKKLR       +++ R  GY +
Sbjct: 182 KTWDT-DIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQL 225


>gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 225

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A     G         +       S + D+  ++  L   G   +E
Sbjct: 5   LIVEDEPKLAELMSAYLEQAGYEHHHLERGDIVVDYVKSNQVDLILLDLML--PGLDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + + +R  S +P+I ++        L   + G DD V KP   RE++ARV A   R    
Sbjct: 63  VCKQVRQFSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLRRVELD 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +T    + +D      +GE+  L   E ++L+ L+   G+   +  I  +IY   
Sbjct: 123 HIESPKTDGFDLDADRLRATYKGELIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYSDS 182

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
              V +  ++SHI KLRKK+       + + S    GY  + N
Sbjct: 183 -RVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224


>gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 233

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV       R+
Sbjct: 65  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  +  A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|229085620|ref|ZP_04217852.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228697700|gb|EEL50453.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 215

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 92/219 (42%), Gaps = 11/219 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    L    + D++ ++          + 
Sbjct: 4   LIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALELFYEEKIDLAILDWM--MPKRNGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   +L R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLVLTAKSENEDELVALQSGADEYVKKPFHPGILLTRA----KKLLNQ 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            NR +   + +           +   + + E  +++  + ++G  + + ++   ++G F 
Sbjct: 118 GNRIQVKDLLIDVTKNKVYKNDKELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FA 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +E  V++H+ +LRKK+      D + +   LGYS++
Sbjct: 177 YFGDERTVDTHVRRLRKKIGE----DIIKTHHGLGYSLE 211


>gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
 gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G        G  +           +       ++ ++          +
Sbjct: 6   ILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKEDIHLAIVDIM--MPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 64  RMTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E               D  +  + G+   L   E +IL  L  N G+  +  +I+
Sbjct: 124 FMEKLEVRENVHVIGGLEINEDTVEVSIDGKPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++   ++A+  + +  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 ERVW--QEKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEK 230


>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +G ++                R D++ ++  L   G   +
Sbjct: 4   ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSARE--QLPRADLAILDWML--PGVSGV 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  RA    +P++ ++     +  L   D GVDD V KP   RE++ARV A+ RR+ 
Sbjct: 60  DLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRVG 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V    A     R+   G    + GE   L + E  +L  L  + G    + ++   ++G 
Sbjct: 120 VQEEIAVGDL-RIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D    E VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 178 SDFPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRF 218


>gi|237802299|ref|ZP_04590760.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025156|gb|EGI05212.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 224

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLTRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|229197037|ref|ZP_04323775.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|228586457|gb|EEK44537.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
          Length = 215

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++      +++           +   + + E  +++  ++++G  + + ++   ++G FD
Sbjct: 118 DDVIRVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 233

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + +    R   V         +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQFTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A +++ + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R         
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +    S +           DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVML--PDIDGY 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+ 
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVT 119

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     IR     V    R   V GE   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KREVPQNHEVIRAGEIVVCPKERKVHVNGEEVQLTYREFNLCKLFVSNPQRVFMREELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL+       + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLKASGEH--IKTIYGVGYKLD 222


>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|325679549|ref|ZP_08159129.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8]
 gi|324108836|gb|EGC03072.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8]
          Length = 220

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++++G       +G      +S+   + L      D+  ++  L        
Sbjct: 3   ILLVEDDPIIQEGLKLALTSEGCGFAAASSVAEAKALLG-GEYDICILDVML--PDGTGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++   IR     P+I ++       T+   ++G DD + KP   RE++AR+        R
Sbjct: 60  DVCAEIRRKGDTPVIFLTACDDELHTVLALENGADDYIAKPFRMRELMARIKAVLRRMGR 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    + G   V          G    L   E ++L   + NRG  +++ Q+   I+
Sbjct: 120 KTDSEEPVKVGSNDVNVRTGKVFRDGSEVILTAMEYKLLLIFINNRGAVLSRQQLLHNIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  + V +N +  ++ +LR+KL N  G + + + R LGY +
Sbjct: 180 DVAGDYVTDNTLTVYVKRLREKLEN--GDEVIQTVRGLGYRL 219


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L      A+  +   ++E  +       L  +   D+  ++  L       +
Sbjct: 3   ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVIL--PRLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R IR+   Q+P++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +          ++     +      +  L  +E  +LE  + +  +  + + I   I+ 
Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR KLRN     D V++   +GY +
Sbjct: 181 YEDTPGEE-AVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221



 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 3    VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
            ++ DD  L++    +L    G  +    + +      S+   DV  ++  +    G + +
Sbjct: 1382 LVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWETM 1441

Query: 62   ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
             + +       +P++  S Y          D    
Sbjct: 1442 AMLKESTETKHIPIVICSVYKPTTNNQPSSDFVDW 1476



 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           + +DD   +      L    G+ +   +              D+  ++  +    G ++ 
Sbjct: 384 LAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIELC 443

Query: 62  ELPRIIRAHSQVPLIGISDY 81
           ++ R     S++P++ ++ +
Sbjct: 444 QVVRNDPQWSELPILFLTVH 463



 Score = 43.5 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 15/40 (37%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS 41
             ++++D A + + ++ LF    +      +      L   
Sbjct: 1503 ILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQE 1542


>gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   E     +           D+  ++  L   G + L
Sbjct: 5   ILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLML--PGRRGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR+ S VP+I I+        L   + G DD + KP   RE++ARV ++ RR   
Sbjct: 63  DICKEIRSFSDVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRRTGG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +  G   + +      + G V  L   E ++L +L +N G+  +++Q+   IY   
Sbjct: 123 RLTASVQGL-ILDTSRYQATLHGHVLDLTVVEFKLLHFLFSNPGQIYSRSQLMHRIY-PD 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  V +  ++SH+ KLRKK+       + + S   +GY  +
Sbjct: 181 ERIVSDRTIDSHVKKLRKKISLAAPDQELIHSVYGIGYKFE 221


>gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
          Length = 232

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +          +G                     +++ +   ++       E
Sbjct: 5   LIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEIDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----R 118
           + R +R  S VP+I I+        +   D G DD V KP    E++ARV A+ R    +
Sbjct: 65  VCRRLRKESMVPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAVLRRLGAQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +  +    ++ GE   L ++E  +L  L  N  K  ++  +  +I+
Sbjct: 125 EPANAQTLSYANLYINLEKYAVQINGEDVALTKKEIELLWTLAKNSTKVFSRDNLLDSIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G +D   +   V+SHI +LR KL         + +   +GY  +
Sbjct: 185 G-YDYFGDSRTVDSHIKRLRAKLDKYEHPLWEIKTIWGVGYRFE 227


>gi|295692613|ref|YP_003601223.1| response regulator [Lactobacillus crispatus ST1]
 gi|295030719|emb|CBL50198.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 240

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A T                             V  L  +E  +L  +     +  
Sbjct: 125 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPRQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 7169]
          Length = 230

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59
            ++++D   + +            +      +         + D+  ++  +     G  
Sbjct: 5   ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGID 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                +   A + +P+I ++        +   D+GVDD + KP   RE+++RV A+ RR 
Sbjct: 65  FARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAVLRRT 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAI 177
            +   +       +  +     V      +     E R+L + + +  +   + QI  A+
Sbjct: 125 GIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDAV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  ++E  ++ HI +LRK L        + + R  GY  
Sbjct: 185 WG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 226


>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|160947044|gb|ABX54691.1| response regulator [Enterococcus faecalis]
          Length = 231

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   + +       ++G  +  F   E      +     ++ ++  L        
Sbjct: 5   IVVVDDEQEIANLITTFLENEGFQVTTFYKGEDFLTYIARESISLAILDVML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR +   P++ ++        +     G DD + KP +  E++ARV    RR++ 
Sbjct: 63  RILQEIRKNFYFPVLMLTAKEENMDKIMGLTLGADDYITKPFNPIEVVARVKTQLRRVQK 122

Query: 122 SNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N + E   +  F+        D     +  +   +   E  +L YL  ++G  V+  ++
Sbjct: 123 YNRKVENESVIEFNKDGLTLKKDSHQVFLFDKEITVTPIEFNLLLYLFEHQGVVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           F A++         N + +HI++LR+KL         + +   +GY I+ 
Sbjct: 183 FEAVWKEKYLE-NNNTIMAHIARLREKLDEQPRKPKFIKTVWGVGYIIEK 231


>gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 240

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  +    +               +AI+  L   G    
Sbjct: 3   LLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVML--PGMSGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IR     +P++ ++   +++  +   DSG DD + KP    E+ ARV A+ RR  
Sbjct: 61  ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        + S      V G   PL RRE  +L     N  K +++  I  +++G
Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +     NV++ ++S LRKKL        + ++R  GY +D
Sbjct: 181 TTENIG-TNVIDQYVSYLRKKLDVAGAGLSIVTERGRGYRLD 221


>gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 223

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 89/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++         +   +E   S E    L ++   D+  ++  L    G  +
Sbjct: 3   ILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGFDL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117
           +   R   +   +P++ ++    +   +     G DD + KP +  E++ RV        
Sbjct: 63  IPQLRS--SQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       +   + + S  R   + GE  PL  RE  +L   + +  +   + ++   +
Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G FD + +   V+  + +LRKKL  +   + + +    GY 
Sbjct: 181 WG-FDFSGQTRAVDIMVQRLRKKLGPQG--ERLKTIYGAGYK 219


>gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 235

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +           G S     +         + + D   ++  L       +E
Sbjct: 8   LIIEDERDISRIVNDYLRVQGFSTFITENARDGLQGVRNRQPDFIILDLTL--PDADGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + R +R  +  P++ +S   S    +     G DD + KP          +   R  A  
Sbjct: 66  VCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMADP 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G + +    R          L  +E  +L +L +N  +   KTQ+   
Sbjct: 126 KLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G +   VE+N +  +I +LR+KL         + +   +GY  D
Sbjct: 186 VWG-YSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGYKFD 230


>gi|285018336|ref|YP_003376047.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283473554|emb|CBA16057.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 229

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 84/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A       A    DG  +      +    L +  + D+  ++  L        
Sbjct: 6   ILLVEDDADSASILEAYLRRDGFEVAVAEDGQKAVRLHAQWKPDLVLLDIMLPM--LSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I ++        L     G DD V KP   +E++ARV A+ RR   
Sbjct: 64  EVLSTIRRSGDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPKEVVARVYAVLRRTGP 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E       S          RD + +     L   E  +L  LM    K   + ++
Sbjct: 124 ARGSEEPLRHDRLSVDTAAVRATVRDDQGRESPLELTPTEFNLLATLMKTPFKAFTRNEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D    E VV++H+  LRKKL  +     + + R +GY  
Sbjct: 184 LEIC--LPDSDALERVVDAHVHNLRKKLEQEGIHGLLVTVRAIGYRF 228


>gi|70730005|ref|YP_259744.1| transcriptional regulatory protein RstA [Pseudomonas fluorescens
           Pf-5]
 gi|68344304|gb|AAY91910.1| transcriptional regulatory protein RstA, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 236

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +   +  +         +  +  ++  L   G+  L 
Sbjct: 10  LLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTALAAFLEFKPKLVVLDLML--PGQSGLH 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA +  P++ ++        +   +SG DD V KPI    +LAR+ A+ RR    
Sbjct: 68  VCREIRAVADTPIVILTAKEDDLDHILGLESGADDYVIKPIKPAVLLARLRALQRRQVPE 127

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +  + R+  + GE   L   E  +L  L +  GK +++  I + + 
Sbjct: 128 TTTLRGALAFGVLSIDRNSREVRLAGEPVELTTMEFELLWLLASAPGKTLSRDDILNRMR 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G+ +       V+ +ISKLR KL++       + +    GY  +
Sbjct: 188 GI-EFDGLNRSVDVYISKLRGKLKDNPREPVCIKTVWGKGYLFN 230


>gi|42781949|ref|NP_979196.1| response regulator [Bacillus cereus ATCC 10987]
 gi|42737873|gb|AAS41804.1| response regulator [Bacillus cereus ATCC 10987]
          Length = 215

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|302187377|ref|ZP_07264050.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. syringae 642]
          Length = 230

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP+ V    R   +  +   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 NDKPESALRFGPLTVDLAYRRVLLDEQEMALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     AL   +G S++  ++ E   +L      D++ ++           
Sbjct: 3   ILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIG--MPKLDGF 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119
           E+ R   +A    P++ ++     Q  ++  D+G DD + KP H+ E+     A I R  
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   + GPI + +   +  + G+   L   E +++EYLM N  K ++KT++   IY 
Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  ++ NV+E  + +LRKKL       P+++ R  GY I+
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPTGELKPIETLRGRGYRIN 221


>gi|229590533|ref|YP_002872652.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229362399|emb|CAY49304.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 248

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G              L  S + D+  ++   +      
Sbjct: 20  LILIAEDEPEIADILSAYLKRSGFQTAQALDGRRALELHQSLKPDLVLLDV--LMPNLDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------- 112
             +   IR     P+I ++        L     G DD + KP +  E++AR         
Sbjct: 78  WMVLAEIRHRGTTPVIMLTAQDQDMDKLMGLRIGADDYIVKPFNPAEVVARTQAVLRRSL 137

Query: 113 -AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 R  V    A    I           Q     L   E R+L  L     +  ++ 
Sbjct: 138 DHGYATRPSVLRVNAFEIDIDSHEVSVQIGAQKHPLNLTVTEFRLLAQLAKAPKRVFSRA 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +      +    E  V+SHISKLR+K+ +        S R +GY  
Sbjct: 198 ELLALC--SPESDSLERTVDSHISKLRRKIEDLGLQGVPVSIRGVGYRF 244


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           ++++D A + D      GD+G  +    S +    L       D   ++  L   G   L
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
           ++ +  RA    VP+I IS   S    +   + G DD + KP    E++        R  
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +  ++     E G +++    R   V+G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKL 231


>gi|157150931|ref|YP_001450784.1| response regulator Rr1 [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|262283082|ref|ZP_06060849.1| response regulator Rr1 [Streptococcus sp. 2_1_36FAA]
 gi|157075725|gb|ABV10408.1| response regulator Rr1 [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|262261334|gb|EEY80033.1| response regulator Rr1 [Streptococcus sp. 2_1_36FAA]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           L       +  ++  L        
Sbjct: 4   IMLVEDDPVIRQMIKKMLEQWGYQVFAVEDFMEVLSLFVKEEPQLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 62  HWCQEIRKISTVPIMFLSSRDQAMDIVMAINMGGDDYVTKPFDNNVFLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E   + +     D    G+V  L + E +IL  L    G  V +  +   ++
Sbjct: 122 FGTDQNLLEHRGVILNLKSMDLMYNGQVITLTKNEFQILRVLFERAGSIVEREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEETGLKNFIETKKGIGY 220


>gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB
 gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 234

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  L   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVML--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + V +DG +    G    L   E R+L    +  G  +
Sbjct: 126 GGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGTVL 185

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 SRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232


>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +      S+   D++ +   ++      +
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       I          V+G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+ +   G + + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227


>gi|294146553|ref|YP_003559219.1| two-component system response regulator [Sphingobium japonicum
           UT26S]
 gi|292676970|dbj|BAI98487.1| two-component system response regulator [Sphingobium japonicum
           UT26S]
          Length = 236

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +  FG  G+        E           D+  ++          L
Sbjct: 5   ILIVDDDPHIRQLLVFAFGKAGLETIEAADGEAALAAVERHAPDLVILDIN--MPRMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RAH  VP+  +S        +   + G DD V KP   RE++AR  AI RR   
Sbjct: 63  EVCRRLRAHDDVPIFFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVVARSMAILRRASA 122

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + + ++       G    L   E  IL  L+A   +  ++ QI  
Sbjct: 123 RPPAVEAIGAIRHGRLSLDTESWSAHWGGAEVSLTVTEFTILRTLLAMPSRIFSRDQIID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G    A+ +  V+SHI  LR+K  +  GFD ++++  +GY +
Sbjct: 183 RFRG-PGFALTDRTVDSHIRNLRRKFADVGGFDIIETRPGIGYRL 226


>gi|169343156|ref|ZP_02629700.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298794|gb|EDS80869.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 223

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       +      L    + D+  ++A L        
Sbjct: 3   ILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAML--PDISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++    +   L     G DD + KP +  E++ R+  + + +  
Sbjct: 61  NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +              D R   ++ E   L  +E  +L  L  N+ K  ++ ++ + +
Sbjct: 121 DSKKKVKDLTVGDLTLFLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V+  I +LRKKL      + + +    GY +D 
Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222


>gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 265

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    ++  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  +L  LM   G+ VA + I
Sbjct: 125 RAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|222056601|ref|YP_002538963.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565890|gb|ACM21862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 222

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +                  +          + + ++  ++  L GKG   
Sbjct: 4   MILIVEDEEKLAKLLADYLHQADYETHCLSDGSRVVPWIQAQKPEMILLDLMLPGKG--G 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR+ S VP+I I+        L   + G DD + KP   RE+         R  
Sbjct: 62  LEICKEIRSFSSVPIIMITARVEEIDRLLGLELGADDYICKPFSPREV-VARVKAVLRRA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +        +      L   E ++L  L A+ G+   + Q+   IY  
Sbjct: 121 HGAEAVNGKELVLDDSRYRAMLHDRDLHLTAVEFKLLSLLAASPGRIFGRQQLMDHIY-P 179

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
               V +  ++SHI KLR+KL     G + + S    GY  +
Sbjct: 180 DQRIVSDRTIDSHIKKLRRKLSGADPGQEYIHSLYGAGYKFE 221


>gi|77460250|ref|YP_349757.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384253|gb|ABA75766.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 241

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R  R  +  P++ +S   S    +   D G +D V KP   +E LARV A+ R+   
Sbjct: 65  QVLREFREWATAPVLVLSVRASEGQKVQALDGGANDYVTKPFGIQEFLARVRALLRQAPA 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 GEAQQAALNFGPLTVDLAYRRVLLDGVEVGLTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           G      + + +   +  LR+KL  +      + ++  +GY +  N
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRLLDN 229


>gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   + +        +G  +   N+              +  ++  +    G + 
Sbjct: 7   ILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEAKDFLPQLILMDIMMPKMDGVES 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R I    +  +I ++      + +  F++G DD + KPI  R +++RV+A +RR  
Sbjct: 67  CRKIREIPKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVSAFFRRGT 126

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + N  E+  I+               +   LP++E  +L +L         + ++   I
Sbjct: 127 KNTNEKESVVIKDLVIDRSSYTVMKGPDKIILPKKEFELLYFLANRPNTVFNRDELLKNI 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     V    V+ HI K+R+K+      D + + + +GY  
Sbjct: 187 WGTDVYVV-PRTVDVHIRKVREKIGE----DYITTIKGIGYKF 224


>gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 240

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G+ +   +  E       + + D+  ++  L   G   L
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLML--PGADGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
            + R +R+  + P++ ++        +   + G DD V KP+  R +LAR+         
Sbjct: 69  TVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVET 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S  R E G + + +  R+  + GE   L   E  +L  L +N G  +++  IF 
Sbjct: 129 DSERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGTVLSRETIFE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + G+     ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 189 KLRGI-QYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLF 233


>gi|89895456|ref|YP_518943.1| hypothetical protein DSY2710 [Desulfitobacterium hafniense Y51]
 gi|89334904|dbj|BAE84499.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 239

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   ++   + +   +G   +    S +  + L  + +  V  ++  L       
Sbjct: 9   LLLVDDEPDLRGMLVEILQKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSL--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113
             L   +R+ S VP++ +S     ++ L     G DD + KP   RE       +L R  
Sbjct: 67  FSLMAELRSFSAVPVLFLSARDEDESRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTY 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +        G   V  +       G    L  +E  +LE L  NRG  V    +
Sbjct: 127 FPPTLRQSKKPLFRLGEAAVDLNSALVIRPGGEVTLTAKEYILLEKLYENRGNIVTGDSL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               +G  D    EN +  HI +LR+K+         + + R LGY +
Sbjct: 187 CRTAWG-DDLYGYENTLMVHIRRLREKIEPEPSSPCYLLTVRGLGYKL 233


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIG-KGEK 59
            ++++D   +       F   G       +      L S     D+  ++  L G  G  
Sbjct: 5   ILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGISGYD 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVA 113
           V +  R   +  ++P+I ++           FD+G DD V KP   RE+      L R A
Sbjct: 65  VCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMRRA 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +      +      GP+ V        V G+   L   E ++L   + NRG+ + +  +
Sbjct: 125 QVVSLPSAAVEDLCFGPLTVDQTAHQVWVNGQEVQLTYMEFKLLVAFLENRGRLLTRDFL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++GL   AV+   +++H+ +LR+KL +      +++ R  GY  
Sbjct: 185 LDEVWGLS-AAVQTRTIDTHVKRLRQKLSDAG--QYIETLRGAGYRF 228


>gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       +D   ++     E    +          ++      G+   
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIM--MPGQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           EL R IRA S VP++ +S        +     G DD + K     EI+ARV         
Sbjct: 65  ELCRRIRAESHVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAT 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R  V     + G +R+    R+  V+G    L  +E  +L     +        Q+ +  
Sbjct: 125 RQPVEGRVLDYGRLRLNLSTREVVVEGNNVVLTPKEFELLRLFAEHPRHVFTYDQLLAKF 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +   D   + + +  H+S+LR+K+         + +   +GY  +
Sbjct: 185 W---DGVGDRHTIRVHLSRLREKIEADPNQSQFLVNVWGVGYRFE 226


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +               +R D+  ++  L        
Sbjct: 10  LLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVML--PDMDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR  
Sbjct: 68  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 127

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 128 GGEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 188 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 230


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +             I V    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens]
 gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2]
 gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance)
           [Serratia marcescens]
 gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1]
 gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894]
 gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2]
 gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 226

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223


>gi|329939486|ref|ZP_08288822.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301715|gb|EGG45609.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 233

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              S R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRSRRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESNVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                                  V + G +    G    L   E R+L    A  G  ++
Sbjct: 126 GGMRGEEDDPAAEGGVLTFGELEVDTGGMEVRRSGRPVSLTPTEMRLLLEFSAVPGTVLS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 RDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 231


>gi|296330321|ref|ZP_06872802.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676074|ref|YP_003867746.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152589|gb|EFG93457.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414318|gb|ADM39437.1| two-component response regulator (paired with YvcQ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 237

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   +  + D+  ++  L        
Sbjct: 4   ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFTEMKPDLVLLDINL--PFFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR   
Sbjct: 62  YWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + + +   R+        + D  + E         ++E ++L   +    K V++ ++
Sbjct: 122 EYSPSLSQESRIVELGGLTVYPDQNEAEWNSTRILFSQKEFQLLSIFVREHKKIVSRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LRKKL N    D + + R  GY    N
Sbjct: 182 LEALWDDVDF-VDDNTLTVNVNRLRKKLENAGLKDCISTIRGQGYQFQVN 230


>gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330]
 gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330]
 gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 236

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G         +       +   D+  +   ++      +
Sbjct: 10  ILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTI-PDIELLILDIMMPEMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K+
Sbjct: 69  QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V +   + +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 129 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 189 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234


>gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           SDF]
 gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii]
          Length = 236

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++       +P++ ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|206974063|ref|ZP_03234981.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748219|gb|EDZ59608.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 215

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  ++++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
 gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +   +                  D+  ++  +       +
Sbjct: 3   ILLVEDDREISEMLEEFLIQEAFEVVPAFDGLEACEKFEDGEFDLVLLDLMI--PKMSGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ +S   SL       + G DD + KP    E+LAR+ A  RR   
Sbjct: 61  DVMKTIREKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTNQ 120

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G I++         +G+   L  +E  IL  LM N  K   K 
Sbjct: 121 YAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTKE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           QI+S ++       +EN V  HIS+LR K+ +     + + +    GY I
Sbjct: 181 QIYSLVW-EDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGYRI 229


>gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 230

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  ++    + E       S    +  ++  L       +
Sbjct: 6   ILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLML--PYIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S        +     G DD + KP   RE+ ARV +  RR   
Sbjct: 64  EVLRKIRESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      PI  ++D            + +   L  +E ++L+  + N  +   K QIF+
Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++       ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 184 NVW-ENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKL 228


>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V          +G  +    +           +  +  ++  L       +
Sbjct: 5   LLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWML--PEMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S++ +I ++        +   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  EVCRELRKMSRMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRMEG 122

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +                  QG+  PL   E R+L  L A  G   ++  +     
Sbjct: 123 LEFTEQQMQRGELLISESQCRAWKQGKEIPLTPTEFRLLLTLAAKPGIVYSR--LQLLAA 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   +E  V++HIS+LRKK+ +       + +    GY  
Sbjct: 181 LEDELLNDERTVDAHISRLRKKIEDAPSDPVYIQTVYGFGYRF 223


>gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
 gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D             ++G   + FN+        S  + D+  ++  L    G ++
Sbjct: 9   ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  +  R  
Sbjct: 69  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 127 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 187 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 227


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 90/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +  ++      E            +  ++  +       +
Sbjct: 5   ILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPL--IDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S  P+I I+        +   +SG DD + KP    E++AR+ A+ RR+  
Sbjct: 63  EVCNRIREKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRITP 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N      +  P+ +  +    ++ GE   L ++E  +L  L ++  K + +  +   I
Sbjct: 123 VENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDNI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL     +   + +   +GY  + 
Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLALNGQYSWDIKTIWGMGYKFEV 227


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVML--PNISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+ R IR  ++ +P+I ++   S+   +   D G  D + KP         I A +    
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    V + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLVHTVRGVGYVL 225


>gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         + + +   ++ E    L +     ++ ++  L   G    
Sbjct: 4   ILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVML--PGIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++   +R     + +I ++        +   + G DD + KP +  E++ R+ A + R  
Sbjct: 62  KVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++ E GP  +    +          +  +E  +++  + N  K   + ++   ++G
Sbjct: 122 DEDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +   +  +++ +I +LR K+ +       +++   +GY 
Sbjct: 182 E-NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGYR 221


>gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
 gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
          Length = 237

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++           
Sbjct: 19  ILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVM--MPELDGF 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              R IR     P++ +S        +  F+ G+DD V KP   RE++ RV       + 
Sbjct: 77  STCREIRKFKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNRSQP 136

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +     A    + +   GR   +      +  +E  +L YL+ N+G  + + ++   ++
Sbjct: 137 PQAEKEIAAFEGLTIDFTGRMVYIDDVRIDMSPKEYDLLFYLVKNKGIALTREKLICDVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++HI  LR +L        + + R +GY  +
Sbjct: 197 G-YDFYGDDRTLDTHIKLLRGRLGAY--RHYIVTLRGVGYRFE 236


>gi|190576270|ref|YP_001974115.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014192|emb|CAQ47836.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G++ E  +            + D+  ++  L  +    +
Sbjct: 11  ILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFVRYQPDLVLLDLMLPQR--DGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 69  DLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +          G+   L   E R+L  L+A  G+  A+ ++   +Y   
Sbjct: 129 DPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 188

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V+   V+SH+  LR+KL +     +P+ S   +GYS +
Sbjct: 189 RVVVD-RTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 228


>gi|154500018|ref|ZP_02038056.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC
           29799]
 gi|150271616|gb|EDM98873.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC
           29799]
          Length = 221

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D     D         G  +      +    L   +  D+  ++  L    +  
Sbjct: 3   VIMIVEDDRQTNDAVSEYLKSLGHRMFSAYDGDEALQLFECSNIDLVILDIML--PKKTG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L +   IRA S VP++ ++      T +  FD   DD + KP     +  RV A      
Sbjct: 61  LAVLHTIRAKSSVPILMLTAISDEYTQVTSFDEQADDYITKPFSMVLLGRRVTALLRRSG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS +    G + V   G   +       +  +E  +L+ L+ ++G  + ++Q+  +++
Sbjct: 121 QTVSPDTMTFGDVTVDFSGYTAKGPEGKIDITPKEIDLLKLLVEHKGLVLTRSQMLDSLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G  D  + +  ++++I  LRKKLR     D + + + +GY  + 
Sbjct: 181 GA-DYPIIDRTIDTYIKNLRKKLRL----DCIVTVKGIGYKFEV 219


>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 236

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD + +++         G       +++    +    R D+  ++      G   +E
Sbjct: 12  LIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWM--MPGGSGIE 69

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           L R ++  +    +P+I ++        +   + G DD + KP   RE++AR+ A     
Sbjct: 70  LTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 129

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +   E   + +    +   +      +   E R+L++LM ++ +  ++ Q+   +
Sbjct: 130 TPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYSRAQLLDQV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK + +   F  + + R  GY  
Sbjct: 190 WG-GNVYVEERTVDVHIRRLRKAIGSTHDF-LIQTVRGTGYRF 230


>gi|37526668|ref|NP_930012.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786100|emb|CAE15152.1| two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 234

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +          +     +           D+  ++  L+  G   + 
Sbjct: 11  LIVEDEPKLGQLLVDYLQAADYETQWLLRGDEAVSHVQQHNPDIILLD--LMLPGCDGIT 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        L   + G DD + KP   REI+ARV  I RR    
Sbjct: 69  ICREIRRFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCYRP 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   + +         + ++  L   E R+L+ + +  G+  ++ ++ + +Y    
Sbjct: 129 QDIVKQSDLHIDEACFQARYRDKILDLTPVEFRLLKTMASRPGQVFSRDKLLNNLYDDH- 187

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  ++SHI  LR+KL         + S   LGY  +
Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDNSKTFIRSIYGLGYRWE 227


>gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 224

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + +P    E+    R        
Sbjct: 61  EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +    R D+  ++  L   GE  L
Sbjct: 9   LMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLML--PGEDGL 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            + + +RA     P+I ++        +   + G DD + KP + RE             
Sbjct: 67  SICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQP 126

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +       +     GP  +    R+    GEV  L   E  +L+ L+ +  + +++ 
Sbjct: 127 SPELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLSRD 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  D    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 187 RLAELARGR-DYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVF 235


>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         +D   +    S             D+  ++      G+   
Sbjct: 5   ILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN-PDLILLDVM--MPGKNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
           E+ R IR     P+I ++     +  +     G DD ++KP   R++             
Sbjct: 62  EVCREIRDIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHLRRDQR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + +   GR     GEV PL ++E  ++E L  N G+  +K QI+  
Sbjct: 122 SFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKEQIYEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+G +D   +   V  HI K+R KL+      + + +   +GY  + 
Sbjct: 182 IWG-YDAEGDSATVAEHIKKIRYKLKKYDKDREYISTVWGVGYKWEK 227


>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
 gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          DG  +    +      +  S    ++ ++          +
Sbjct: 6   ILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIM--MPAMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R IR    +P++ +S   +    +    +G DD + KP            ++     
Sbjct: 64  EVCRRIREQYNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V  N+ +   + +    R   + G+   L + E  IL  +  NR +     +I
Sbjct: 124 FNQVPSEVHKNKIQIRGLEIDELSRKVLLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + +I+         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESIWRERAHE-SNNTVMVHIARLRNKIEEDPKKSTIIQNVWGVGYKIE 231


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 86/227 (37%), Gaps = 6/227 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +        +        + E  E        D+  ++  L    G   
Sbjct: 6   ILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDGIDF 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118
           L+  R     +++P++ ++        ++ FD G DD               +     ++
Sbjct: 66  LKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKK 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + + G ++V  D  +   Q +   L   E ++L  L  N+ + +++  I   I+
Sbjct: 126 PDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
              +  ++   ++ H+ +LR  L++    + +++ R  GY +  + N
Sbjct: 186 NN-ESEIDARTIDVHVKRLRSTLKSHGIENSIETIRGAGYKLSDEIN 231


>gi|49081912|gb|AAT50356.1| PA1437 [synthetic construct]
          Length = 230

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   D       + G +++  ++      L      DV  ++  L   G     
Sbjct: 4   LIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVML--PGVDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + ++       +    R          L  +E  +L  L    G+ ++KT I   ++ +
Sbjct: 122 ESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 182 -NLDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  ++                 D+  ++  L       LE
Sbjct: 5   LLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN-PDLVLLDLGL--PKVDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  + +P++ ++       T+   D+G DD V KP    E+         R   
Sbjct: 62  VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAEL-LARVRALLRRTP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +R+ SDGR    +GE   L  +E  +L  L+  +GK V + Q+   ++   
Sbjct: 121 TDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWDTA 180

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
                   ++ HIS LR+KL +       + + R +G+  +
Sbjct: 181 -WFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFE 220


>gi|229173513|ref|ZP_04301056.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228609895|gb|EEK67174.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 215

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S   ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSAKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 635

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A               +++  N+ E    L      DV  ++  L       +
Sbjct: 3   ILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIML--PQLDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++     +  +   ++G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +     +   QG++  L   E  +LE  + +  +  ++  I   I+ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           L     EE  + SHI  LR+KL+      + + +    GY +
Sbjct: 181 LDKVPGEE-TISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD     +   A     G ++   ++ +    +  +   D+  ++  +    G  +
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            +  R       VP++ +S +   ++       G D  + K 
Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKT 611


>gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16]
 gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++                 D+  ++  L   G    
Sbjct: 3   ILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ R+  I  R   
Sbjct: 61  QVLRELRRERDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++ +  R     G+   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + ++R +GY +D
Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFPHKLIHTRRGMGYVLD 220


>gi|313124626|ref|YP_004034885.1| response regulator consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281189|gb|ADQ61908.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +      S+   D++ +   ++      +
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR + 
Sbjct: 62  DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSRK 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E         I          V+G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227


>gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +            ++                 D+  ++  L        
Sbjct: 4   ILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLNCLKENEFDLLILDIML--PKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+    +P++ +S        +  F+ G DD + KP    E++ARV +  +  + 
Sbjct: 62  SILRSIQDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKNYER 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N+ ++             +  D R+  V  +   L ++E  +L Y+  N  +  ++ +
Sbjct: 122 IKNKFDSNKKSDTILIRGLEIRKDSREVFVNCKEVTLAQKEFDLLLYMSENPNRVFSREE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +F  ++GL D   + + V  HI ++R+K          +++    GY I
Sbjct: 182 LFEKVWGL-DAIGDTSTVTVHIGRIREKTEASPSNPQYIETVWGAGYRI 229


>gi|160900531|ref|YP_001566113.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366115|gb|ABX37728.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 223

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G ++E        ++L      D + ++  L       L
Sbjct: 3   ILVVEDEPTLCGQLVQALQQAGHTVETAADGATAQYLGEVEEFDAAVLDLGL--PVRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  RA  + +P++ ++   +    +   D+G DD + KP H  E++AR+ A+ RRL 
Sbjct: 61  TVLRAWRAQGRVMPVMILTARGAWHEKVAGMDAGADDYLAKPFHMEELMARLRALLRRLS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +        V                L   E ++L  LM   G+ +++T++   IY 
Sbjct: 121 PHASAQWQCGPIVLDSRHARVSVAGQPLTLTSHEFKVLALLMQRVGQVISRTELSEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKLPAGS----IETVRGLGYRL 216


>gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 229

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +    +              +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            E+ R         +  ++      + +  FD+G DD + KPI  + ++++         
Sbjct: 68  CEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVKALLRRLK 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  + G I +  +       G+   LPR+E  +L  L +   K   +  I  
Sbjct: 128 EDNAAEQEDIVKVGNIVINREEYKVINDGQEIVLPRKEFELLALLTSKPNKVYKREVILD 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  V    ++ HI KLR+K+ +    D   + + +GY  
Sbjct: 188 KVWGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 227


>gi|310641017|ref|YP_003945775.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309245967|gb|ADO55534.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 253

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D    +   +G   ++   + +    +   +R DV  ++  L        
Sbjct: 21  LIVDDEQGLRDMLTKVLKKEGFLHVKHAATGQEALQIVMESRIDVIVLDVML--PDNDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +++VP++ ++   +    L  F  G DD + KP +  E++AR+ A  +   V
Sbjct: 79  EVCRQMRLYTEVPILFLTARDTDLDKLMGFGIGGDDYITKPFNPLEVVARMKARMKYRNV 138

Query: 122 SNNRAETGPIRVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +     +               VQ +    P RE  +L +L  +  +  +  Q++
Sbjct: 139 TTADMKPALQTLDFGYFCLELESGALYVQDQEVDCPAREWLLLVFLCKHPNRIFSVRQLY 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            AI+       +E  V  HIS+LRKK+  +      + + R LGY +
Sbjct: 199 EAIWSET-FLGDEKTVVIHISRLRKKIEPDPKHPQFLVNVRGLGYKM 244


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +  ++   ++      L      D+  ++  +   G    E
Sbjct: 7   LIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMI--PGIDGFE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVA 113
           + R IR   A  ++P+I ++        +     G DD + KP    E+      + R +
Sbjct: 64  VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +      S+N  + G I + +D  + + +G V  L  RE ++L+ L  N+G  V++  +
Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            S ++G  +   +   ++ HI KLRKKL +       +++ R LGY I
Sbjct: 184 LSEVWGCGNL-GDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMI 230


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +             I V    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G +    +       +    +     +   ++   +   
Sbjct: 5   ILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIF--NKYSPLLLLLDVMMPKKDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S VP+I I+        +   D G DD + KP    E++AR+ AI RR+ +
Sbjct: 63  EVCREIRQNSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDI 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+   +               + +V G    L ++E  IL  L  N GK  ++  +  ++
Sbjct: 123 SDEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDSV 182

Query: 178 YGLFDEAVEENVVESHISKLRKK--LRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++HI +LR K  + +   +D + +   +GY  + 
Sbjct: 183 WG-YEYFGDARTVDTHIKRLRAKTDITDTSAWD-IKTIWGVGYKFEV 227


>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 240

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         S+ R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              A+              +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL +K     + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 236


>gi|312959066|ref|ZP_07773585.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286836|gb|EFQ65398.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++          L       V  ++  L   G    
Sbjct: 3   ILIVEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVML--PGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R   
Sbjct: 61  GVLRALRARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ +
Sbjct: 121 HEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 -NFDSDANVVEVAIKRLRAKLDGPFEHKLLHTIRGMGYVLE 220


>gi|229815480|ref|ZP_04445812.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
 gi|229809013|gb|EEP44783.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
          Length = 229

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ----SSAREDVSAIEAFLIGKG 57
            +L++D  L+ D    L    G S++  ++      L     S+    +  ++  L    
Sbjct: 5   ILLVEDDPLIVDALTELLTSSGYSVDTADTQTRAIELATGAGSAGTYQLVLLDVTLR--E 62

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                +   ++  S   P+I ++       T+     G DD V KP   RE+LAR+AA  
Sbjct: 63  GNGFAVCAAVKETSPSTPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR + S      G IR+ +D    E +G    L   E R+L     N GK V++  I  A
Sbjct: 123 RRSQPSRRIVSLGDIRIDTDRAYVERKGVELTLSALEYRLLLLFATNPGKLVSRDMIRDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++      +EEN +  +I +LR K+ +     + + + R LGY 
Sbjct: 183 LWDSAGTYIEENTLSVYIKRLRDKIEDDPSRPELIQTVRGLGYK 226


>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D   +++  +  E    L  +   D+  ++  L       L
Sbjct: 3   LLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVML--PKMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA    +P++ ++   +    +D  D+G DD V KP    EI AR+ A+ RR  
Sbjct: 61  AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++         ++  +  +   Q E+  L  +E  +LE  + N+ +  ++ QI   ++ 
Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++   EE+ V++HI  LR KL+      D + +    GY +
Sbjct: 180 AYEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRL 221


>gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2]
 gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2]
          Length = 235

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      G++G  ++  ++      L +    D+  ++  L   G   L
Sbjct: 9   LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGML--PGIDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 67  AVLAALRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 126

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    E   +R+               G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 127 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 187 VWDM-NFDSETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 230


>gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 235

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G         E  +    +   DV  ++  L   G+  L 
Sbjct: 8   LIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWML--PGQSGLM 65

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  RA      +P++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++    G + + +       QG+   +   E ++L + M +  +  +++Q+   +
Sbjct: 126 APEQVSDSVTIGELVLDAATYRVTFQGQPLKVGPTEFKLLHFFMKHSERVHSRSQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGAAGA--MVETVRGAGYRL 225


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D       + G +++  +      W       D   ++  L   G    E
Sbjct: 4   LVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLML--PGLDGFE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A    P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  V
Sbjct: 62  VCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGAV 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                            R  +  GE   L  +E  +LE LM   G+ + ++ I   ++ L
Sbjct: 122 ERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  NVV+ ++  LR+K+    G   +++ R  GY +
Sbjct: 182 G-YDGTSNVVDQYVRYLRRKIDPADGLSRIETVRGAGYRL 220


>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    +P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 242

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 78/228 (34%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++         +G  +      E    L      D+  ++  L   G+   
Sbjct: 8   IVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTPDLIILDIML--PGDDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
            + + +R  S VP+I ++        +   + G DD + KP             +     
Sbjct: 66  TICQRLRKSSTVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILRRVQP 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +   +     +  G+   +   +  +L   +    + +++ +I
Sbjct: 126 KQSAPSGQPKIYRFGNLVLDTTSRMLVQPNGDKSAISGADYTLLCLFLEKGNEVLSRDEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G     ++   ++ H+S+LR++L +       + + R  GY +
Sbjct: 186 SDVLHGRECSPLD-RSIDVHMSRLRQRLGDDAKNPTLIKTVRGSGYVL 232


>gi|70731644|ref|YP_261385.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           fluorescens Pf-5]
 gi|68345943|gb|AAY93549.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           fluorescens Pf-5]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R  R  S VP++ +S   S    ++  D G +D V KP   +E LAR+ A+ R+   
Sbjct: 65  QVLREFREWSAVPVLVLSVRASELQKVEALDGGANDYVTKPFGIQEFLARIRALLRQAPS 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    + GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 GEVQEAALQVGPLTVDLAYRRVLLDGVEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRL 226


>gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB]
 gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 243

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D  +   G+ G  ++     +  + L+S     +  ++      GE  L
Sbjct: 10  ILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLM--MPGEDGL 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARV 112
            + R +R    Q P+I ++        +   + G DD + KP +        H  +  + 
Sbjct: 68  TICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQG 127

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +      +          I V    R  +   E+  L   E  +L+ L+ +  + +++ +
Sbjct: 128 SKPPGAPEDEPETITFSNIEVDLAARTLKRGEELQALTTGEFAVLKVLLQHPRQPLSRDK 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + S   G  ++   +  ++  +S+LRK +  +      + +    GY  
Sbjct: 188 LMSLARGR-EQGPFDRAIDVQVSRLRKLIETDPAQPRYLQTVWGFGYVF 235


>gi|296329901|ref|ZP_06872385.1| YxdJ [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676627|ref|YP_003868299.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152940|gb|EFG93805.1| YxdJ [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414871|gb|ADM39990.1| two-component response regulator (paired with YxdK) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 229

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G              +    + DV  ++  L        
Sbjct: 4   IMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINL--PSYDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR HS  P+I IS        +   ++G DD + KP  +  +        R A  
Sbjct: 62  YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +K      E    +++ +  +   Q E   L ++E ++LE L+    K   + ++  
Sbjct: 122 EYAVKQGERIVEFEGAQLYVERFELRYQEEKCELSKKESKLLEVLLERGEKVTGRDRLME 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   D  +++N +  +I++LRKKLR+      ++S R  GY +
Sbjct: 182 KTWDT-DLFIDDNTLNVYITRLRKKLRDLGVPFSIESVRGEGYQL 225


>gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB900]
 gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB056]
 gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB058]
 gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB059]
 gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
 gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2]
 gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter
           calcoaceticus PHEA-2]
 gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
          Length = 236

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++       +P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
 gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
          Length = 272

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 40  ILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLML--PGVDGL 97

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 98  EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 157

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 158 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 217

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 218 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 264


>gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 228

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +      S+   D++ +   ++      +
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTT-PDIALMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       I          V+G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+ +   G + + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227


>gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
 gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 251

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G +++   +         S +  +  ++  L        
Sbjct: 35  ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGL--PDRDGA 92

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R     +P++ +S   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 93  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E H+  LR+KL    G D + + R +GY ++ 
Sbjct: 213 WQD-DTSSNTLEVHMHNLRRKL----GKDRIKTVRGVGYRLEE 250


>gi|300776691|ref|ZP_07086549.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300502201|gb|EFK33341.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD   + +        +G  +    +             D+  ++  +    G + 
Sbjct: 5   ILLIDDELDILEILSYNLEKEGYDIYTATNGNEGIEKAKEIVPDLILLDVMMPEKDGIET 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYR 117
            +  R ++   +  ++ +S      + L  F +G +D +    KP      +  +  +  
Sbjct: 65  CQELRKVKELQKTLIVFLSARSEEFSQLAGFQAGANDYIVKLIKPKILISKVNALLQLTS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++  +    E G + +  D       G+ F LP++E  +L  L +N  K   + +I   +
Sbjct: 125 QVSDNAKLIEIGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTEKVFKREEILEKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V E  ++ HI +LR+KL    G + + + + +GY +
Sbjct: 185 WGN-DVIVGERTIDVHIRRLREKL----GINTIQTLKGIGYKL 222


>gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G +++     E   +L  +   D   ++  L    +  L
Sbjct: 3   ILVVEDDKDLNRQLTAALSQAGYAVDHAFDGEEGWFLGDTEPYDAVVLDLGL--PKKDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R A   +P++ ++        ++  D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLKEWRKAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRALLRRSA 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     GP+++ +      V+     L   E R+L Y+M + G+ +++++I   +Y 
Sbjct: 121 GRASDELVCGPVKLDTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + N +E  + +LRKKL    GFD +++ R LGY 
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GFDIIETLRGLGYR 215


>gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           MSMB43]
          Length = 229

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I  R   
Sbjct: 61  TVLERLRRERSTPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRAKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii]
          Length = 220

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +           G +++     +   +L      D   ++  L       L 
Sbjct: 4   LLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGL--PVLDGLT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R A   +P++ ++   S    +   D+G DD + KP H  E+LARV A I R   
Sbjct: 62  VLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNSV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     GP+ + +      + G    L   E ++L  LM + G+ V++ Q+   +Y  
Sbjct: 122 HASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   + N ++  I +LRKKL      D +++ R LGY +  N
Sbjct: 181 QDFDRDSNTIDVFIGRLRKKL----PPDTIETVRGLGYRLAGN 219


>gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +  +   R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 231

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G + +   S E      S    D+  ++  L   G   
Sbjct: 5   LLLVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIML--PGMNG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL + I+ H      P+I ++        +  F+ G+DD V KP   RE+  R+ A+ +
Sbjct: 63  FELCQKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLK 122

Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +  + + +         +               L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRKSAKMQEILNGDGIVIDLSRHRVTSDQRELELTLMEFKLLVALLKRKGEAQSRETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D  +    +++HI++LR+KL  K     + + R +GY  +
Sbjct: 183 LSDVWDV-DRNINTRTIDTHITRLREKLGEKGN--LIKTLRGIGYKFE 227


>gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
 gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G  +E   +           +  +  ++  +    G + 
Sbjct: 6   ILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKAKVFKPHLILMDVMMPQMDGVEA 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
               R + A     ++ +S      + L  +D+G +D + KPI  + +++++     I +
Sbjct: 66  CGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKALLKIKQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +   +        +  +      +GE F LPR+E  ++  L +N  +   + +I   +
Sbjct: 126 QDEEVADIIRLKDFTINRETYKVTFKGEDFTLPRKEFELIALLGSNPERVFKREEILDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +  V    ++ H+ KLR+K     G D   + + +GY ++
Sbjct: 186 WGN-EVVVGGRTIDVHVRKLREK----FGNDRFSTIKGIGYKMN 224


>gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 230

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  +E  +  E       S + DV  ++           
Sbjct: 5   ILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVM--MPKLTGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R +     + +I ++    +   +   + G DD + KP   RE++AR          
Sbjct: 63  EVCRKLENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G ++V    R   V  E+  L  +E  ++  L+AN  +   +  +   
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+ D A     V+ H+ +LRKK+        + +   +GY 
Sbjct: 183 VWGM-DYAGGTRTVDIHMQRLRKKVGEA-EPYLLQTVYGVGYK 223


>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 233

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 E       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++    A   ++G  ++   + E   +   S   D++ ++  L   G   +
Sbjct: 3   LLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGL--PGMSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R      P++ ++   + Q  ++    G DD V KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G + +    +   V  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL   LG   +++ R  GY  + 
Sbjct: 180 PGDDDRDPNVIEVLVGRLRRKLEAVLGGKSIETVRGQGYMFNE 222


>gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        +  S+   +         +    D+  ++      G   LE
Sbjct: 6   LVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVM--MPGLDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP++ ++   + +  L  FD G DD V KP   RE++ARV ++ RR   S
Sbjct: 64  VVRALRRESDVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRAGPS 123

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +R                    V          E RILE LMA  G+ +++ Q+ +  +
Sbjct: 124 GSRPVLPLRVGALLLDQIRHTVRVHDRPIDCTPAEFRILEALMAEPGRVLSRRQLLNQAH 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  D  V E   ++H+  LR+K+       + + +   +GY I
Sbjct: 184 GQ-DTFVTERTADAHLKNLRRKIEADPRRPEYLHTVYGVGYKI 225


>gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 267

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +G  ++          +    R D   ++  L       L
Sbjct: 44  ILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIML--PDMDGL 101

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA S   P++ ++   +++  +    +G DD V KP    E++AR+  + RRL 
Sbjct: 102 EVLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLH 161

Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S            + +  + R+    G+   L   E  +L + M N  + ++K QI   
Sbjct: 162 RSTLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDR 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LR+K+ +      + + R  GY +
Sbjct: 222 VW-NYDFGGQANVVELYVSYLRRKI-DVGRQPMIHTMRGAGYVL 263


>gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 249

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLML--PKVDGF 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + IR     + +P++ ++     Q  +D F++G DD + KP    E+L RV A+ RR
Sbjct: 62  TVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRR 121

Query: 119 LKVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  A+   I  +       +  +     +   L   E  +L  L+   G+ ++ ++
Sbjct: 122 SDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D + +   +  H+  LR KL         + +    GY ++
Sbjct: 182 ILKEVWG-YDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLE 230


>gi|89069932|ref|ZP_01157265.1| DNA-binding response regulator PetR [Oceanicola granulosus
           HTCC2516]
 gi|89044486|gb|EAR50614.1| DNA-binding response regulator PetR [Oceanicola granulosus
           HTCC2516]
          Length = 231

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++      GE  +
Sbjct: 6   ILIVDDDERIRGLLQKFLLRNGFLVSVARDGAHARRLLDGLEFDLIVLDVM--MPGEDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R   + P++ ++        +   ++G DD + KP   +E+L R+ AI RR+  
Sbjct: 64  SLCRDLRGRLKTPILLLTAKGETTDRIAGLEAGADDYLAKPFEPKELLLRINAILRRVPA 123

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     T       P R   +  +     E+  L   E  ++    A  G+ +++  +  
Sbjct: 124 AEPAPVTPKVLLLGPCRYDIERGEMWCGEELVRLTATENHLMRIFSARPGEALSRNMLVE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G      +E  V+  I++LR+KL  +      + + R  GY +
Sbjct: 184 EL-GRAGGQAQERAVDVQITRLRRKLEADPKQPRYLQTVRGAGYML 228


>gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus 10329]
          Length = 230

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++   +R+     P+I ++    ++  +  F+ G +D V KP        R        I
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +   + NV++  + +LR K+        + + R +GY ++ 
Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 226


>gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 228

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +      S+   D++ +   ++      +
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV         
Sbjct: 62  DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +  +       I          V+G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227


>gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   V+ G        G  +    +          A  D+  ++  L    G ++
Sbjct: 5   LLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQLPQA--DLVVLDWMLPDEPGVRL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R    +  +P++ ++        ++    G DD + KP    E+         R  
Sbjct: 63  LERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPEL-LARIQALLRRS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R E G + +  +     + G    L RRE  +L +L  + G+  ++ ++   ++G 
Sbjct: 122 GKSGRIERGGLALDLERHQASLDGRPLDLTRREFDLLAFLARHPGRVYSREELLERVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +       V+ H+++LR+KL  +      +++ R +GY  
Sbjct: 181 PEFMGTARTVDQHVAQLREKLQEDPKLPRFLETLRGVGYRF 221


>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 237

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++   +               +  ++  L   G   +E
Sbjct: 15  LVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLML--PGFDGME 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
           + R IR  S   ++ +S        +    +G DD V KP   RE++ARV          
Sbjct: 73  VCRRIRTFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRAS 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +    R   V   +  L   E  +L  L +      ++ +I ++++
Sbjct: 133 SLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           G      ++++V+ H+  LR+KL +       + + R +GYS+
Sbjct: 193 GSS-WFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSL 234


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           ++++D A + D      GD+G  +    S +    L       D   ++  L   G   L
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
           ++ +  RA    VP+I IS   S    +   + G DD + KP    E++        R  
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +  ++     E G +++    R   V G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKL 231


>gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 245

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 7/220 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D   + +        +G+ +   +       +      D+  ++  L       + +
Sbjct: 21  VIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLML--PDIDGMVV 78

Query: 64  PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
            R +RA S+  P+I ++    +Q  +     G DD + KP    E+            + 
Sbjct: 79  CRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGIS 138

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +  + R+  + G    L   E  +LE  M +  +   +  + S ++G 
Sbjct: 139 RPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG- 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F    + N+VE HIS LR+K+ +      + +   +GY++
Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTL 236


>gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G  ++  N+      L      D+  ++  L        
Sbjct: 3   ILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINL--PHIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            +   IR  S   ++ ++    L   +   D G DD + KP    E+    R        
Sbjct: 61  GVLGQIRQDSSTRVMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +           +   L  +E  +L  LM   G  +++TQI S ++ 
Sbjct: 121 APVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFERKLIHTLRGVGYVLEE 222


>gi|58337060|ref|YP_193645.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|58254377|gb|AAV42614.1| response regulator [Lactobacillus acidophilus NCFM]
          Length = 240

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFRKNADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +          +                      +  V  L  +E  +L  +     +  
Sbjct: 125 MEEEPDTAKEDKQDYEITTKHLKISKNRREVLFDKQPVTNLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SREQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1]
 gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044]
 gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator
           [Escherichia coli ATCC 8739]
 gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR
 gi|619132|emb|CAA58529.1| pcoR [Escherichia coli]
 gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1]
 gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli
           ETEC H10407]
 gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509]
 gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 226

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D             ++G   + FN+        S  + D+  ++  L    G ++
Sbjct: 4   ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  +  R  
Sbjct: 64  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 182 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 222


>gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + E     +  +    +V      +    +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 222

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + + D       ++  +++  ++      +      D+  ++  L   G   +
Sbjct: 3   ILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLL--PGLSGV 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R   + H+QVP+I ++    L   +   +SG +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLSG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +          G+   L  +E  +LEYL+ NRG    +++I   ++ +
Sbjct: 121 SETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +++ LRKKL        +++ R +GY I
Sbjct: 181 H-FDADTSVIDVYVNFLRKKLDGAGCGALIETVRGVGYVI 219


>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++          L ++   D+  ++  L        
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVML--PRMDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R +  ++P++ ++   +++  +   + G DD + KP    E+LARV + + R  
Sbjct: 61  ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+        + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDEPFEPKLIRTVRGMGYVLE 221


>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis TXDOH]
 gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis Bt4]
 gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
 gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
          Length = 233

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 227

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +           G + +   + +       +   D+  +   ++       
Sbjct: 5   ILIVEDDSKIARLLELELNHAGYATQVAFNGKDGLVAAEN---DIDLVLLDVMMPELSGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R +R   + VP+I ++    +   +   D G +D V KP    E    +  +  +  
Sbjct: 62  EVLRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  V  N+     + +  D  +         L  RE  +L YLM N+   + + QI + +
Sbjct: 122 QAAVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E N+V+ +I  LRKK+ ++     + + R +GY +
Sbjct: 182 WG-YDYFGETNIVDVYIRYLRKKM-DRSQSPLIQTVRGIGYVL 222


>gi|313633173|gb|EFS00056.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           N1-067]
 gi|313637755|gb|EFS03112.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYETFLKEDFDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTIWGVGYKFDE 226


>gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 281

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +       + G  ++            +    D+  ++  L   G    
Sbjct: 56  LLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESVAELVPDLVILDRKL--PGIDGT 113

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R+ + VP++ ++   + +  +D  +SG DD + KP   RE    +  +      
Sbjct: 114 EVCRRLRSFTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKRTVD 173

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP  +   GR     G    +  RE  +L + + +  +   +  +  +++
Sbjct: 174 ESTPEAPFRLGPFHLDVSGRRVSRNGIPLEVSAREFDLLAFFLKHPHQVFDRETLLRSVW 233

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           G   E  + + +   + +LR+K+ +       + +    GY  D 
Sbjct: 234 GW--EIGDPSTITVTVRRLREKIEDDPSHAQFLSTVWGAGYRFDV 276


>gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
          Length = 236

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G         +       +   D+  +   ++      +
Sbjct: 10  ILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTI-PDIELLILDIMMPEMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K+
Sbjct: 69  QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V +   + +         +   L   E  IL  L ++  +  +  +IF 
Sbjct: 129 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 189 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234


>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 227

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   D       +            + D+  ++  L   G+  +
Sbjct: 5   ILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLML--PGKDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   ++G DD + KP   +E++ARV A  R+   
Sbjct: 63  EVCREIRRTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +   G       E   L   E  ++  L     +   +  +   ++G 
Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 183 RHQA-DTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGYR 221


>gi|254391878|ref|ZP_05007072.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816204|ref|ZP_06774847.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444537|ref|ZP_08219271.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197705559|gb|EDY51371.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328803|gb|EFG10446.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+ G     G  G  +E     E         R D+  ++  L       LE
Sbjct: 5   LLIEDDPAVQKGVSLALGRRGHDVEVAARGETGLLALERYRPDLVLLDLML--PQMSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
           + R IR   QVP+I +S        +   ++G DD + KP     I AR+          
Sbjct: 63  VCRRIRESKQVPIIILSARGDEIDMVVGLEAGADDYITKPAGGAIIEARMKAVLRRVAPA 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +           G + V          G    L   E ++L +L A  G+  ++ Q+
Sbjct: 123 QDAQEAIPPAGAEHYGDLTVDRTTLVVTKHGAELALAPSELKLLLFLTAAPGQVYSRQQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++  +    +  +V++ + +LR K+ N       V + R  GY  
Sbjct: 183 LEQVW-EYVFYGDVRLVDACVMRLRAKIENHPRRPVYVQTVRGFGYRF 229


>gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 254

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D + ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ I+     +  +  F+SG DD + KP    E+  RV A+ RR  
Sbjct: 65  CQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRRTD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +    +   I  F       +  +     +   L   E  +L  L+   G+ VA + I 
Sbjct: 125 HAPLSTQHNEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +           +  +   D+  ++  L       +
Sbjct: 7   ILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIML--PKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E    IR   Q+P+I +S        +    SG +D + KP +  E++A      R   +
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y+  +V     E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            ++        +N V  HI+K+R+K+         + +   +GY 
Sbjct: 185 MVW-EDLFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 228

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G  +    +           +  +  ++          +
Sbjct: 8   ILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVM--MPEMDGI 65

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
           E    IR  S      +  ++      + +  FD+G DD + KPI  +    ++ A +  
Sbjct: 66  EACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N   + G + ++ +      +G+   LPR+E  +L  L    GK   + +I 
Sbjct: 126 LKSDENAVNTIVKIGNLVIYKEEYKITNKGKEITLPRKEFELLSLLATKPGKVFKRDEIL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  +  V    ++ HI KLR+K+ +K       + + +GY  
Sbjct: 186 DKVWGN-EVVVGGRTIDVHIRKLREKIGDKS----FKTVKGVGYKF 226


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +   ++    +      +       +  I+           
Sbjct: 4   ILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIM--MPRLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I +S        +   + G DD + KP +  E+LARV +  RR   
Sbjct: 62  KTTIKIRETSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTN 121

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N        +          D ++  V G+   +   E RIL  LM+N  +  +  +I
Sbjct: 122 YANNNTPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++       +   V  HI ++R+K+  N      +     +GY  +
Sbjct: 182 YEKVWKEPAYNPD--TVTVHIRRIREKIEINPGEPRYLKVVWGVGYKFE 228


>gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ I+          + 
Sbjct: 7   LIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEEIHLAIIDIM--MPRMDGIR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR +  
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRKF 124

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +                 D  +  + G    L   E +IL  L  N G+  +  +I+ 
Sbjct: 125 LEKLAPQENTHVIGGLEINEDMVEVSMDGNPVKLTPIEYKILLLLAKNPGRVFSAEEIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   ++A+  + +  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 RVW--QEKAINTDTIMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 230


>gi|194367612|ref|YP_002030222.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|43294862|gb|AAQ90163.2| putative responder [Xanthomonas campestris]
 gi|194350416|gb|ACF53539.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G++ E  +         +  + D+  ++  L  +    +
Sbjct: 11  ILIVEDEPRLASVLRDYLAAAGMTSEWVDDGGLVIDAFARYQPDLVLLDLMLPQR--DGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S VP+I ++        L   D G DD + KP   RE++ARV A+ RR + 
Sbjct: 69  DLCRELRAASDVPVIMVTARVEEIDRLLGLDIGADDYICKPFSPREVVARVVAVLRRYRP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +          G+   L   E R+L  L+A  G+  A+ ++   +Y   
Sbjct: 129 DPAARANSGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 188

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V+   V+SH+  LR+KL +     +P+ S   +GYS +
Sbjct: 189 RVVVD-RTVDSHVRNLRRKLSDAGMEGEPIRSVYGMGYSYE 228


>gi|49477887|ref|YP_036945.1| two-component response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118478209|ref|YP_895360.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043341|ref|ZP_03110579.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225864835|ref|YP_002750213.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228915460|ref|ZP_04079049.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229185077|ref|ZP_04312265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|49329443|gb|AAT60089.1| two-component response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417434|gb|ABK85853.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025650|gb|EDX64319.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788786|gb|ACO29003.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228598334|gb|EEK55966.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228844107|gb|EEM89167.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 215

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         +   +++     E    L  +   D+  ++  L       + 
Sbjct: 4   LLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVML--PKLDGIS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L + +R     +P++ ++   + +  +   D G DD V KP    E+ AR+ A + R   
Sbjct: 62  LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGNT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +  +        +   L  +E  +LE  + N    ++++ I   ++  
Sbjct: 122 SLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D    E  V+ HI +LRKKLRN     D +++   LGY +
Sbjct: 182 ED-PPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRL 221


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++I+D   +           G   E  ++         +   D+  ++  L    G +V
Sbjct: 4   ILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAGSEV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           L + +      +  +I +S        +   + G DD V KP   RE    +  V     
Sbjct: 64  LRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRRAD 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +    +G I + +      V+GE   L   E R+L  L+    +   +  + S +
Sbjct: 124 AEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLSDV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+    +    V++HI +LR+KL      D +++ R +GY +
Sbjct: 184 WGI-QAEIHTRTVDTHIKRLREKLGPAG--DIIETVRGVGYKL 223


>gi|210630068|ref|ZP_03296230.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
 gi|210160688|gb|EEA91659.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
          Length = 236

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   ++   +      G+  EGF S    +   +    D   ++  L    G +
Sbjct: 12  MIYYVEDDDNIRGLTLYALRQQGIEAEGFASDSEFKAAVARRVPDAVLLDIMLPDTDGLE 71

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   R  +A + VP++ ++   S    +   D G DD + KP    E+ +R  A+ RR 
Sbjct: 72  IMRRLRADQATATVPIMMLTAKDSELDKVVALDGGADDYLTKPFSLMELTSRCRALLRRG 131

Query: 120 KVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +++  A               R   V+G+   L  RE  +LEYLM   G    +  +  
Sbjct: 132 GMTSRPASETLQVGGIELSPSRRTVRVEGQELKLTLREFDLLEYLMRKPGVVFTRESLLQ 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G +D       V+ H+  LR+KL +    D +++ R +GY +
Sbjct: 192 SVWG-WDFDGGSRTVDVHVQTLRQKLGDH--ADRIETVRGVGYRL 233


>gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
 gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
          Length = 250

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++   N+ +    +    R D+      ++      +
Sbjct: 20  ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMV--ERYDIHLAIVDIMMPVMDGI 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR +   P+I +S        +   + G DD V KP    E+LARV++  RR   
Sbjct: 78  EMTMKIRENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 137

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             N                       D ++  V G+   +   E +ILE LM   G+  +
Sbjct: 138 YLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFS 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             QI+  ++   + A+    V  H+  LR+K+  N      +     +GY I+ 
Sbjct: 198 SEQIYENVW--HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEK 249


>gi|29375010|ref|NP_814163.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227519052|ref|ZP_03949101.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553742|ref|ZP_03983791.1| response regulator [Enterococcus faecalis HH22]
 gi|229547739|ref|ZP_04436464.1| response regulator [Enterococcus faecalis TX1322]
 gi|229548299|ref|ZP_04437024.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255970931|ref|ZP_05421517.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256617297|ref|ZP_05474143.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761300|ref|ZP_05501880.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256852353|ref|ZP_05557729.1| response regulator [Enterococcus faecalis T8]
 gi|256959583|ref|ZP_05563754.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|257080788|ref|ZP_05575149.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083459|ref|ZP_05577820.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|257088874|ref|ZP_05583235.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415107|ref|ZP_05592101.1| two-component response regulator [Enterococcus faecalis AR01/DG]
 gi|257418153|ref|ZP_05595147.1| two component system response regulator [Enterococcus faecalis T11]
 gi|293384250|ref|ZP_06630138.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|293387019|ref|ZP_06631587.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|300861877|ref|ZP_07107957.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275240|ref|ZP_07556386.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288746|ref|ZP_07568724.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307292514|ref|ZP_07572363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900547|ref|ZP_07759847.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312904930|ref|ZP_07764069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312906317|ref|ZP_07765328.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909663|ref|ZP_07768517.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952008|ref|ZP_07770892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29342469|gb|AAO80234.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933142|gb|AAS49388.1| response regulator [Enterococcus faecalis]
 gi|227073499|gb|EEI11462.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177124|gb|EEI58096.1| response regulator [Enterococcus faecalis HH22]
 gi|229306515|gb|EEN72511.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307231|gb|EEN73218.1| response regulator [Enterococcus faecalis TX1322]
 gi|255961949|gb|EET94425.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256596824|gb|EEU16000.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256682551|gb|EEU22246.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256712207|gb|EEU27239.1| response regulator [Enterococcus faecalis T8]
 gi|256950079|gb|EEU66711.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256988818|gb|EEU76120.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991489|gb|EEU78791.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|256997686|gb|EEU84206.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257156935|gb|EEU86895.1| two-component response regulator [Enterococcus faecalis ARO1/DG]
 gi|257159981|gb|EEU89941.1| two component system response regulator [Enterococcus faecalis T11]
 gi|291078398|gb|EFE15762.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|291083561|gb|EFE20524.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|295114236|emb|CBL32873.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848402|gb|EFK76159.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496436|gb|EFM66004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500215|gb|EFM69554.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306508108|gb|EFM77232.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|310627692|gb|EFQ10975.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630008|gb|EFQ13291.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310631814|gb|EFQ15097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290065|gb|EFQ68621.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292372|gb|EFQ70928.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028498|gb|EFT40430.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315144040|gb|EFT88056.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315146803|gb|EFT90819.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315153816|gb|EFT97832.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315167757|gb|EFU11774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315172811|gb|EFU16828.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315574822|gb|EFU87013.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315576415|gb|EFU88606.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582269|gb|EFU94460.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323479529|gb|ADX78968.1| response regulator [Enterococcus faecalis 62]
 gi|327534112|gb|AEA92946.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 230

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVML--PTMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R +  
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+     D P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 250

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  ++             +   D+  ++  L       + 
Sbjct: 22  LVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAHDLLILDVML--PELDGIG 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP++ +S        +   ++G DD V KP+    ++AR+ A+ RR    
Sbjct: 80  LCRRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139

Query: 123 N---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                           +    G + V + G +    GE   L   E R+L    A  G  
Sbjct: 140 PDPEGPAAAGRSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++   ++  +    +  VV+  + +LRKK+    G   +++ R  GY +
Sbjct: 200 LDRRRLLREVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 247


>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 229

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  S    DV  ++  L        E
Sbjct: 4   LVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLML--PVLDGFE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A    P++ +S    +   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGAQ 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   +R+    R     G    L  +E  +LEYLM + G+ +++T I   ++ L
Sbjct: 122 ERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                  NVV+ +++ LR+K+    G   +++ R  GY +  N
Sbjct: 182 A-YDRNSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLRVN 223


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +             I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 235

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +     ++ GD G +            +      D+  ++           
Sbjct: 4   ILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVM--MPRMDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R++R      P+I +S    +      F +G DD + KP   RE+L  + A  RR  
Sbjct: 62  TTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRAS 121

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +    G   +          GE   L  +E +I   L ++ G  ++K Q+
Sbjct: 122 MAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             A +G  +   E + +   I KLR+K+ +       + +   +GY  +
Sbjct: 182 VEAAWGK-EFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFE 229


>gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 248

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    DG+     +       L    + D+  ++  L   G   L+
Sbjct: 15  LVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLFRQLKPDMVLLDIHL--PGMDGLD 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110
           L R IR   Q P+I ++        L     G DD V KP    E+              
Sbjct: 73  LLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRAQAQ 132

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             A      ++   R E       +     + +    PL   E R+L  L A   +  ++
Sbjct: 133 PAAPARAAQRIRVGRIEIDQEAHAAFAHGDDGRAVPLPLTLTEYRLLACLAAQPRRCFSR 192

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +      L +    + V++SH+SKLR+KL+     + +++ R +GY +
Sbjct: 193 SHLIEHC--LPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240


>gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 229

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +   +       G  +   +              D+  ++  L    +   
Sbjct: 5   ILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVEWIRDNTPDLILLDLML--PVKDGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 63  TICQEVRQFSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLRRQEP 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        ++   D            L   E  +L+ L+++ GK  +++++ + IY   
Sbjct: 123 TYYERAQSALQFNEDTLSVSTASTQIELTVVEFELLKALVSHPGKIFSRSRLAAIIYSDH 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              V E  ++SHI K+RKKL  +     + S    GY  + N
Sbjct: 183 -RIVSERTIDSHIKKIRKKLAAEPINLTIQSVYGAGYKAEPN 223


>gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
 gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
 gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
 gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
          Length = 236

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L  +   D+  ++      G+   
Sbjct: 7   ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
            L + +R HS VP+I ++        +   + G DD + K    RE       IL R   
Sbjct: 65  TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +   +          V  L   +  +L   + +  K + +  I 
Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKILTRDDIA 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228


>gi|300361402|ref|ZP_07057579.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300354021|gb|EFJ69892.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 236

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +  +  +    +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGVEAVEMFKAHPDSYDIVTLDLNLPKKDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170
           +  +   +  ++     +  ++  +   +            +E  +L  +     +  ++
Sbjct: 124 IEKDMHASNGLKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 236

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++       +P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKVIDANGLMLDPVSQRVSFGESILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae]
 gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae]
 gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 226

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYILE 222


>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 86/221 (38%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +  +    + G S+                  DV  ++           
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVM--MPKMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+ R +R  +  P++ ++    +   +   + G DD + KP    E++AR+     R   
Sbjct: 61  EVLRRLRKEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGPS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   +++    R     G    L  +E  +L     ++ + ++++ I S ++ +
Sbjct: 121 REEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+ +      + S R +GY  D
Sbjct: 181 -NFDSDTNVVDVAVRRLRLKIDDPFQLKLIHSVRGIGYRFD 220


>gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 249

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD + + +         G  +         + L      D+  ++  L    G  V
Sbjct: 5   ILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFTV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ +R  
Sbjct: 65  CQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQRTD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + A    I  +       +  +         L   E  +L  L+   G+ VA ++I 
Sbjct: 125 RIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     I        P      V  +   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N    + + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222


>gi|331085549|ref|ZP_08334633.1| hypothetical protein HMPREF0987_00936 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407436|gb|EGG86938.1| hypothetical protein HMPREF0987_00936 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKACGFPDGTAFMKALAFETPELVLLDIML--PGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + L + ++       +P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  ISLLKKLKSSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELISRVKAVLR 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK--RVAKTQIFS 175
           R K      +     +  D +  EV+ +  P+    +      +  R K   +++ ++  
Sbjct: 119 RTKREEKSTKYEIRNLILDQKKHEVRVDGIPVTLTLKEFELLELLIRNKNIVLSRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   ++ HI  LR+KL++    D +++ R +GY +
Sbjct: 179 EVWG-YDFDGETRTIDVHIRTLRQKLKSAG--DLIETVRGVGYRM 220


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   + +       + + ++  +   ++       
Sbjct: 3   ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIK-NIDLMVLDVMMPNMDGN 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           ++ + +R   Q+P++ +S   +    +    +G DD V KP +  E++AR+         
Sbjct: 62  QVVKEVRKEMQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSNY 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N       +          + GE   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 MTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++   +  V    V  H+S LR K+     G   + +   +GY I
Sbjct: 182 RVW-QQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|315650118|ref|ZP_07903194.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
 gi|315487610|gb|EFU77917.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  E  +          S    +  ++      G    
Sbjct: 4   ILVIDDDRELCALIRHTVLQESIEAECCHFGRVGLEKLKSNEYQLIILDVM--MPGFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
                IR  S +P++  +      + +    +G DD + KP    E+      L R   +
Sbjct: 62  HTLEQIRKESCIPVLMFTAKNDSFSKVRGLRNGADDYMTKPFVMEELLARIISLIRRYTM 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R            + +  D R    +   F LP +E  +L +   N+G+ + K QI+ 
Sbjct: 122 FNRNGNEAKTLNYDGLIIDLDTRSFTTEKGTFELPPKEFDLLLFCAKNQGRIMTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G      + N + S IS+LRKKL  +      + + + +GY  + 
Sbjct: 182 KVWGEPYVYDDSN-IMSVISRLRKKLETDPGNPKYIQTVKGIGYRFNK 228


>gi|255281374|ref|ZP_05345929.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267862|gb|EET61067.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 237

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 15/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G              L      D+  ++  L   G+   +
Sbjct: 8   LIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLML--PGKSGYD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LAR 111
           + R IR    +P++ ++        +     G DD + KP    E+              
Sbjct: 66  ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +  I               +R+  +             P RE  +L++L  N     ++ 
Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           Q+F  I+G +D   +   V  HI+++R+K+ +       +++    GY  + +
Sbjct: 186 QLFEKIWG-YDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237


>gi|300812325|ref|ZP_07092761.1| response regulator receiver domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496745|gb|EFK31831.1| response regulator receiver domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +      S+   D++ +   ++      +
Sbjct: 5   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNLSGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR + 
Sbjct: 64  DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSRK 123

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +         I          V+G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 124 QVKEEQPDVLEVGPLIINKDSHEVKTVEGKEIRLTALEFGILYLLASHPNRVFSADEIFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 184 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 229


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E++ARV +I  R   
Sbjct: 61  TLLQNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+S I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLEV 221


>gi|169824609|ref|YP_001692220.1| two-component DNA-binding response regulator [Finegoldia magna ATCC
           29328]
 gi|167831414|dbj|BAG08330.1| two-component DNA-binding response regulator [Finegoldia magna ATCC
           29328]
          Length = 218

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G         +    +  +   +++ ++  L       L
Sbjct: 3   LLVVEDDKMIREGICEFLSEFGYKTYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P I ++ +   +  ++ F S  D  + KP     +  R+ ++ ++   
Sbjct: 61  DVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++   
Sbjct: 121 NNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216


>gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 262

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D AL            G  +   +       +      DV  ++  L   G   L+
Sbjct: 33  LIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLP-NGFDGLQ 91

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           + + +R+   Q P++ +S   +    +    +G DD + KP    E+ AR+       ++
Sbjct: 92  ILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQI 151

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+    R  E  G+   L  RE R+L +LM +  + V +T +  +++ 
Sbjct: 152 PAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVWD 211

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR K+        + + R +GYS+
Sbjct: 212 -YRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSL 251


>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G +    N       +  S   D+  ++           
Sbjct: 4   ILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIM--MPYLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +      ++F     R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
 gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   S +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
 gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
 gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
 gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
 gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
 gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
 gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
           13177]
 gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
 gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
 gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
 gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
 gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I  R   
Sbjct: 61  TVLERLRRAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
 gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ + +  F S E       S   D++ ++  L       L
Sbjct: 5   ILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIML--PDISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111
            + + IR      P+I ++        +     G DD + KP            +    +
Sbjct: 63  SICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  +  ++   +   + +     +  + GE   L   E  IL  L+  +   V+  
Sbjct: 123 KYNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++F  ++         N +  HI  LR+K+++       + +   +GY I
Sbjct: 183 ELFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +            L      D+  ++  L        
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGL--PDIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + +R      P+I ++   S+   +   + G DD + KP    E+    RV      
Sbjct: 62  EVLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ SA++
Sbjct: 122 TGPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G   V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218


>gi|187779953|ref|ZP_02996426.1| hypothetical protein CLOSPO_03549 [Clostridium sporogenes ATCC
           15579]
 gi|187773578|gb|EDU37380.1| hypothetical protein CLOSPO_03549 [Clostridium sporogenes ATCC
           15579]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         E    +    + ++  ++  L        
Sbjct: 5   IMIIEDDKNIAKLLGEHIEKYGYEALVAKDFEKILEIFEMEKPNLILLDVNL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
              R IR  S  P+I IS   S    +   +SG DD + KP ++       +  L RV  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y          +   +  + +       G+   L ++E  +L+ +M    K   + ++ 
Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFNGKEAMLSKKEGDLLDAMMKIYPKVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+      V+EN +  +I++LRKKL +    D +++ R  GY ++ 
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLSDLGIKDSIETVRGAGYRLNV 229


>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + +        +G  +   ++             DV  ++          
Sbjct: 8   LILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIM--MPVMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R +R  S VP++ ++     +  +   + G DD + KP  HRE+++R+ A+ RR  
Sbjct: 66  FETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHY 125

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        +++    R+  V GE   L   E R+L +L+ N G  +   Q+ S
Sbjct: 126 TPPPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G      E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 186 KVWGPEYRD-ETHYLRLYITYLRQKIEEDPANPKYILTERGIGYRF 230


>gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 263

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +        S      +      DV  ++  L   G   LE
Sbjct: 34  LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGL--PGIDGLE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR ++ 
Sbjct: 92  VCRQLRTFSDAYVVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMR 151

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +    R+  + GE   L R E  ILE L A  G  +++ Q
Sbjct: 152 PVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQ 211

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 212 LLDIVREGP-WVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259


>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       +    +    + +       + +  +  ++          +
Sbjct: 5   ILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIM--MPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I      P+I +S   S++  ++    G DD + KP    E++ARV A+ RR   
Sbjct: 63  EVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N            D R     G V  L  +E  +L   M   GK   K +I+  ++  
Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    ++N +  HIS LR+K+ +       + + R LGY +
Sbjct: 183 YYFE-DDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYML 222


>gi|270284725|ref|ZP_05966555.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
 gi|270276295|gb|EFA22149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G      +         ++ + D+  ++  L       LE
Sbjct: 2   LVVEDEPTLATAIAQRLTAEGWIARVASDGASAVQASTTLKPDLVIMDVML--PVMDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 60  ATKRIVAMRPVPVLMLTARDDETDKIIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 119

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G + +    R   + GE   L   E  +L  L       + + Q+
Sbjct: 120 KVIAQNSQNEKILDYGSLVIDPTQRVVTLNGESVHLTPTEFDLLVTLARKPKSVLTREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL +      + +   +GY+ +
Sbjct: 180 LEEVWDWVDASG-TRTVDSHVKALRHKLGSST----IRTVHGVGYAFE 222


>gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD+  + D    +    G  +    +          +   +  ++  L        E
Sbjct: 8   LVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRAGESHPRLVVLDVLL--PDGDGFE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    + ++ ++   + +  +     G DD V KP    E++ARV A+ RR+  
Sbjct: 66  VCRTLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRRIGS 125

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A             +  +    G +  L   E ++L +LM N G+ +++ QI  A+
Sbjct: 126 TPVPATGVLRYADLELDEETCEVRRGGRLLSLSPTEYKLLRHLMLNPGRVLSRAQILDAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVV+++I  LR+KL + LG   ++++R  GY++
Sbjct: 186 W-RYDFDGASNVVDTYIGYLRRKL-DPLGPPLIETRRGFGYAL 226


>gi|110799909|ref|YP_694689.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206598|ref|ZP_02632603.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210569|ref|ZP_02636194.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168217561|ref|ZP_02643186.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182625212|ref|ZP_02952987.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674556|gb|ABG83543.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661960|gb|EDT14643.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711371|gb|EDT23553.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177909524|gb|EDT71964.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182380359|gb|EDT77838.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       +      L    + D+  ++A L        
Sbjct: 3   ILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAML--PDISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++    +   L     G DD + KP +  E++ R+  + + +  
Sbjct: 61  NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +              D R   ++ E   L  +E  +L  L  N+ K  ++ ++ + +
Sbjct: 121 DSKKKVKDLTVGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V+  I +LRKKL      + + +    GY +D 
Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222


>gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          L  D G  +                  D+  ++           
Sbjct: 3   ILVADDDLASVKLTSFLLEDAGYRVIKAYDAAGVLHAIEQRTPDLVLLDVG--MPKVSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           ++ R IR  S VP+I ++    LQ  +     G DD + KP    E+LAR          
Sbjct: 61  DICRQIRRMSDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +      ++        +       G    L   E R+L YLM N G+ ++  QI + 
Sbjct: 121 DMVNPVTRISQGPLTLDPIEHTVLFEDGRHVVLTPIEFRLLYYLMQNSGRVLSPDQILNK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G +D   E N+V  ++ +LR K+ +       + + R LGY  
Sbjct: 181 VWG-YDYEGESNLVAVYVRRLRAKIESDGESPRHIITVRNLGYKF 224


>gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 234

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + +         G S++ F + E        +  D+  ++  L        E+
Sbjct: 8   IVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S+VP+I +S        +   + G DD + KP         I   +  + +  
Sbjct: 66  CKRIRKNSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRRVNKSP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  E   I+V  + R+    G    L  +E      L+    K + +  I   I+G
Sbjct: 126 IKQDNVIEMFGIKVDFNQRNVFYNGTHIELSPKEFETFALLLKESNKVLKRNCILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  I +LRKK+        + +   LGY ++ 
Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLEE 227


>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 16  LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGFQ 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 76  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 135

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + +    R   +      L  +E  +L +L +N+G+   K QI++
Sbjct: 136 NPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A +++ + S ISKLRKK+         + + R +GY  + 
Sbjct: 196 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 242


>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G +++         +L +    D   ++  L   G   L
Sbjct: 5   ILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRML--PGLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA   Q P++ +S   +L   +    +G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  SVLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSA 122

Query: 121 VSNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +    +     R     G   PL +RE ++LEYLM + G+ V +T +   
Sbjct: 123 AGTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 183 VW-NYHFDPQTNVIDVHISRLRQKVDKDFDSPLIHTVRGSGYML 225


>gi|332653533|ref|ZP_08419278.1| phosphate regulon response regulator PhoB [Ruminococcaceae
           bacterium D16]
 gi|332518679|gb|EGJ48282.1| phosphate regulon response regulator PhoB [Ruminococcaceae
           bacterium D16]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  +++D A ++   +      G+  +GF+              ++  ++  L    G +
Sbjct: 1   MIYILEDDASIRKLVVYTLQSQGMEAQGFDRPSQFWEAMEKGSPELVLLDIMLPEEDGLQ 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           VL+  R + A   +P+I ++   +    +   D G DD V KP    E++ARV       
Sbjct: 61  VLKRLRSMPATKTLPVIMLTAKSTEYDKVLGLDEGADDYVAKPFGMMELMARVRTALRHA 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +        G + V  +            L  +E ++L  L+   G    + Q+ + 
Sbjct: 121 GQNQPKEKTYSLGSLFVDPERHIVRDGDREVTLTLKEFQVLCLLLERAGTVFTRDQLLNT 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++       V+ HI  LR+KL      D +++ R +GY I
Sbjct: 181 IWG-YEFDGASRTVDVHIRTLRQKLGKSG--DCIETVRGIGYKI 221


>gi|300741844|ref|ZP_07071865.1| DNA-binding response regulator [Rothia dentocariosa M567]
 gi|300381029|gb|EFJ77591.1| DNA-binding response regulator [Rothia dentocariosa M567]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 4/214 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   + +    +   +G +     +             D+  ++  L   G+  +E+  
Sbjct: 12  DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLML--PGKSGIEVCE 69

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            IR+ S VP+I ++     +  +   ++G DD + KP  H E++AR+ A  R  +     
Sbjct: 70  QIRSSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLV 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G   +  DGR  + +G   P+   E  +L  L+   G+ +++ ++   ++G  D  V
Sbjct: 130 VRVGDTIMDMDGRTLKYKGAEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--V 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +++V  H+ +LR K  +      + + R +GY 
Sbjct: 188 SDSLVNVHVQRLRAKFTDIGAEQVIQTVRGVGYK 221


>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +              S  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G I +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSIVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL        + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGADT----IRTVHGVGYAFE 236


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     +    +   +      +    +  S   D+  ++  +        
Sbjct: 9   ILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMI--PKISGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S    ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 67  DLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
            N                       F       L + E +I++ L +N  K   + +I  
Sbjct: 127 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDWN 223
             +G FD    +  +++HI  +R+K+ +       + +   +GY    ID N
Sbjct: 187 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYKSGGIDDN 237


>gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLI-GKGEK 59
            +LI+D   V D         G S+E     E    L   S   DV  ++  L    G  
Sbjct: 3   ILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDGLT 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++  R     S V ++        +            V                  ++ 
Sbjct: 63  IIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQKS 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  + +   + +          G  F L  RE ++LEYLM + G+ V +T +   ++ 
Sbjct: 123 STSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 182 EYHFDPQTNVIDVHISRLRQKIDKDFDQQLLSTVRGAGYML 222


>gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D             ++G   + FN+        S  + D+  ++  L    G ++
Sbjct: 6   ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  +  R  
Sbjct: 66  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 124 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 184 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 224


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D   A   ++       ++ +    +      D   ++  L        E
Sbjct: 9   LIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLML--PDLSGEE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  SQVP++ ++        +   D G DD + KP   +E++ARV AI RR    
Sbjct: 67  ICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNE 126

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +A    +      V     +   + E+  L   E ++L   + N GK  ++ ++   +
Sbjct: 127 GLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D    +  ++ HI  LR K+  +  +  + +   +GY  
Sbjct: 187 LG-YDYVGYDRTIDVHIKNLRHKIECEY-YKYIVTVYGVGYRF 227


>gi|331271140|ref|YP_004385849.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329127635|gb|AEB77577.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           + +    D+  ++A L        
Sbjct: 3   ILVVDDEISILKLLKMTLQLEGHEILLAKDAIEALNIIAKNYPDIIILDAML--PDIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++    +   L     G DD + KP + RE++ R+  I +R+  
Sbjct: 61  NLIGKIKRIKDIPIIILTAKSDMNDKLLGLQLGADDYITKPFNSRELILRINVIKKRILK 120

Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    +   I+V      P       + E   L  +E ++L YL  N G+   + ++ + 
Sbjct: 121 SKTNEDKKVIKVGELTLIPNEKKVLVKDESVTLTYKEFKVLNYLCENPGRVFTRDELLTK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++  +D       V   I ++RKKL      + + +   LGY +D N
Sbjct: 181 VW-WYDFEGTTRAVNILIQRIRKKLG--PCQNYIKTIYGLGYKLDVN 224


>gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G        G  +E   S +  +        D+  ++  L     + L
Sbjct: 4   ILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL-EHGFDLILLDRNL--PDGRGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           +  R +R  ++VP+I ++   +    ++ F +G DD + KP     +  R       +  
Sbjct: 61  DYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V   R   G + V  +     +  E   L   E RILE L+ N+G+ + +  I   
Sbjct: 121 ALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+   +  V+EN +  HI +LR+K+  +    + V +   +GY+ 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D        +G     F++        +    D+  ++  L       
Sbjct: 4   LILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGL--PDIGG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R+IR  S VP+I ++        +   + G DD + KP   RE+ ARV A+ RR  
Sbjct: 62  LELCRLIRQTSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTS 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N  +  G   V    R     G +  L R E  +L+  +   G   ++ Q+   ++ 
Sbjct: 122 NPGNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             + +++   +++HI  +R KL+      +P+ + R  GY++
Sbjct: 182 NPECSLD-RTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYAL 222


>gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G  +    S             D+  ++  L   G    
Sbjct: 4   ILVVEDDLNINNMLREALEEAGYEVVQAYSGTEAMLNVGMTEFDLILLDLML--PGMSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  ++     + P+I +S    L + +D    G DD + KP   +E+L R+    RR+  
Sbjct: 62  EFLKLFNKKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRRVNR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +++    +  S       +             L ++E +ILE L+ +  K  +K +I
Sbjct: 122 NIEKSQDETNQCLSHKDLLLNRSSYEVRLAGNLISLTKQEYKILELLLLHPNKVFSKQEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +  +    E+  +  HIS +R KL+     D +D+   +G+ +
Sbjct: 182 YNYAWEEY-FIGEDKTINVHISNIRMKLKKVTEDDYIDTVWGIGFKL 227


>gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G+     ++ E    L  +    +  ++          + 
Sbjct: 7   LVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVM--MPKMDGIV 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              +IR  S VP+I ++        +     G DD + KP +  E++ARV +  RR  + 
Sbjct: 65  TTSLIREFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLML 124

Query: 123 NNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             ++                R+    +   V      L   E +IL  LM N+G+  +  
Sbjct: 125 GAKSSNQQTTDEGTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSIN 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+  ++       E N V  HI K+R+K+  N      +     +GY I+
Sbjct: 185 DIYERVWDEPGYNAE-NTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234


>gi|255973443|ref|ZP_05424029.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256957737|ref|ZP_05561908.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256963145|ref|ZP_05567316.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257080045|ref|ZP_05574406.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257085734|ref|ZP_05580095.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294780611|ref|ZP_06745972.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307270032|ref|ZP_07551354.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272184|ref|ZP_07553444.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307282378|ref|ZP_07562585.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|255966315|gb|EET96937.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256948233|gb|EEU64865.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256953641|gb|EEU70273.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256988075|gb|EEU75377.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|256993764|gb|EEU81066.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294452221|gb|EFG20662.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306503741|gb|EFM72968.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306511073|gb|EFM80083.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306513608|gb|EFM82218.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|315026240|gb|EFT38172.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032211|gb|EFT44143.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035425|gb|EFT47357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|329574672|gb|EGG56234.1| putative transcriptional regulatory protein ResD [Enterococcus
           faecalis TX1467]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVML--PTMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R +  
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SNAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+     D P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 93/233 (39%), Gaps = 18/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  +   D+  ++  L        E
Sbjct: 5   LVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLML--PEMSGEE 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + I    +  P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 SNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S   ++               P  +        V  +   L  +E  +++YL+ +  + +
Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G FD + +  +V+  I+ LR+K+  +      + + R  GY  
Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEF 234


>gi|225390210|ref|ZP_03759934.1| hypothetical protein CLOSTASPAR_03960 [Clostridium asparagiforme
           DSM 15981]
 gi|225043721|gb|EEG53967.1| hypothetical protein CLOSTASPAR_03960 [Clostridium asparagiforme
           DSM 15981]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G S+    +        +  R D++ ++  L+       
Sbjct: 4   IFLVEDDEAIARNLIRLLRAEGFSVTHALTRGKAHETLAGDRFDLALVDISLL--DGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+ +  +P+I ++      + +  F  G DD V KP   RE++AR+ A  R+   
Sbjct: 62  AVCTEIKENGDIPVIFLTASDDEASVVTGFHMGADDYVTKPFRPRELVARIRAALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    +   + V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SGAVFKISGLSVDTASGVVKKNGGDVFLSALEYRLLLVFVNNPKMILTRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEEDPANPQIILTVRGTGYRL 221


>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   V+          G  +    + +    L S+   D   ++  +    G  V+
Sbjct: 21  LMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAVV 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              R +   + +P+  +S   ++   +   ++G DD + KP    E++AR+         
Sbjct: 81  TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 138

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++    GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  IS LR+KL        + + R +GY +
Sbjct: 199 G-YDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239


>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   V+          G  +    + +    L S+   D   ++  +    G  V+
Sbjct: 21  LMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAVV 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              R +   + +P+  +S   ++   +   ++G DD + KP    E++AR+         
Sbjct: 81  TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 138

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++    GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  IS LR+KL        + + R +GY +
Sbjct: 199 G-YDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239


>gi|116513986|ref|YP_812892.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093301|gb|ABJ58454.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125674|gb|ADY85004.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal precursor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF   +       ++R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFEDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   R   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLRSTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220


>gi|313900334|ref|ZP_07833828.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
 gi|312954883|gb|EFR36557.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    ++    DG  +    S E      +     +  ++  L        
Sbjct: 4   ILLVEDHRELAQLIVSFLKRDGFQVHHVESGEAALSYLAQTEVRLLLLDIML--PHMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
            + + +R H  VP++ +S        L+ ++ G DD +             R        
Sbjct: 62  TVCKKVREHKAVPILIMSARKDRNDQLNGYELGADDYIEKPVDPQILAAKIRAVLQRTSD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +        V G +  L  +E  +L  L++N GK + K  IF++I+G
Sbjct: 122 LHRKETISCCGVVIERAQHRAFVDGNLMELNAKEFELLTLLVSNAGKTLRKEYIFASIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + D   E+  +  HI  LR K+  N      + +   +GY  + 
Sbjct: 182 M-DSFSEQQTLTVHIKMLRDKIEKNPKQPQRIKTVWGVGYRFEE 224


>gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+     L    G S+    +      L  SA  D+  ++           +
Sbjct: 7   LVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDV--TMPELDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
               IR  ++VP++ ++        +    SG DD V KP   +E    +  +       
Sbjct: 65  TLERIRDLTEVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLRRTSGP 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + V    R+  V G    L   E ++L   + +  + +A+ ++   ++G
Sbjct: 125 PEVRPAYRDAIVMVDYVSREVTVAGRPVQLTPLEFKLLSAFVRHPNETLARDRLLELVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +    +  V+ ++  LR+KL  +     P+++ R  GY 
Sbjct: 185 DTEGFGGDQ-VKLYVGYLRRKLGWDAAAPSPIETVRGFGYR 224


>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 268

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +              + + DV  ++  L        
Sbjct: 5   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR++
Sbjct: 62  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVR 121

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +    IR     +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 122 KEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N      + +   +GY +D
Sbjct: 182 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEH--IKTIYGVGYKLD 224


>gi|187778087|ref|ZP_02994560.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
 gi|187775015|gb|EDU38817.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +      +   +G   +    +LE      +    D+  ++  L     + 
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVML--PDGEG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
            EL + IRA S+VP++ +S        +  F  G DD + KP       +  +   R  +
Sbjct: 69  YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +K   N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I 
Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKRDGEIIELKPKELALITFFAKHPNQIISKEKIC 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D    +N +  HI +LR+K+       + + + + LGY +
Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I  R   
Sbjct: 61  TVLERLRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
 gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
          Length = 222

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  ++   S+        + + D+  ++  L   G  + 
Sbjct: 4   ILIVEDDLSIRNILKKYLKSHGYEVDEAGSIVDFRKKLYNDKFDLVLLDIMLP-DGFSIN 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ELP I      + +I IS   S    +   + G DD V KP + RE++AR+ + +RR+  
Sbjct: 63  ELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARIKSYFRRVSK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   + GP+ +F +    ++      +  +E  +L  L  N     ++ +I   ++   
Sbjct: 123 NNEYIKYGPLEIFCENYVVKLNNNEVEMTAKEFEVLCLLAKNPDYVFSREKILDTVW--E 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE + + VV+ HIS +R KL    G   + + R  GY  +
Sbjct: 181 DEFISDRVVDVHISNIRNKL----GKSWIKTIRGAGYKFN 216


>gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
 gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
          Length = 250

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +      G+  EGF+     +   +    D   ++  L       
Sbjct: 9   MIYYVEDDDNIRDLTVYALRKQGIEAEGFSCDGEFKAAVARRVPDAVLLDIML--PDTDG 66

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R +RA      VP++ ++   +    +   D G DD + KP    E+ +R  A+ R
Sbjct: 67  LAIMRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIF 174
           R  +    ++   +                    L  RE  +LEYLM   G    +  + 
Sbjct: 127 RGGMVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++G +D       V+ H+  LR+KL        +++ R +GY +
Sbjct: 187 QSVWG-WDFDGGSRTVDVHVQTLRQKLGEHASA--IETVRGVGYRL 229


>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLITE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   A F  +G +++   S +   +L   A  D + I+  L       L
Sbjct: 3   LLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGL--PELDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           ++ R +RA  Q  P+I ++     +  +D  +SG DD + KP    E+LARV A+  R +
Sbjct: 61  DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++++    G   + +  +   V G    L   E   LEYLM ++ K V+KT++   +Y 
Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + NV+E  I +LRKKL      +P+ ++R LGY  +
Sbjct: 180 EQDYDRDSNVIEVFIRRLRKKLDPDGERNPILTQRGLGYRFN 221


>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
 gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +      +       +   D+  I   ++      +
Sbjct: 3   ILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTI-PDIDLIILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR  +
Sbjct: 62  QVVKKLRKESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSNI 121

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E         I          + G+   L   E  IL  L ++     +  +IF 
Sbjct: 122 KPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKID 227


>gi|237803521|ref|ZP_04591106.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025503|gb|EGI05559.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 282

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           S+   DV  ++  L   GE  L 
Sbjct: 56  LIVDDDVAIRELLCDYLTRFNINARGVTDGAQMRQALSNETFDVVVLDLML--PGEDGLS 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 114 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 173

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 174 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 233

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 234 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 277


>gi|219669886|ref|YP_002460321.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540146|gb|ACL21885.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   ++   + +   +G   +    S +  + L  + +  V  ++  L       
Sbjct: 9   LLLVDDEPDLRGMLVEILHKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSL--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113
             L    R+ S VP++ +S     +  L     G DD + KP   RE       +L R  
Sbjct: 67  FSLMSEFRSISAVPVLFLSARDEDENRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTY 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +        G   V  +            L  +E  +L  L  NRG  V    +
Sbjct: 127 FPPTLRQSKKPLFRLGEAVVDLNSALVTRPQGQVTLTAKEYILLAKLYENRGSIVTGDSL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A++G  D    EN +  HI +LR+K+         + + R LGY +
Sbjct: 187 CRAVWG-DDLYGYENTLMVHIRRLREKIEPEPSSPRYLLTVRGLGYKL 233


>gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
 gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  +  +  +P++ ++        L   + G DD + KP   RE+ ARV       +
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|327480541|gb|AEA83851.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           stutzeri DSM 4166]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++          G  +             +  + D+  ++  L        +
Sbjct: 9   LIIDDEPQIRKFLRISLASQGYRVLESTDGRDGLARAALEQPDLVVLDLGL--PDMDGQD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           +   +R+ ++VP+I +S   S    +   D+G +D V KP   +E LARV     + +  
Sbjct: 67  VLGELRSWTRVPVIVLSVRSSEAEKVRALDAGANDYVTKPFGIQEFLARVRALLRLPQST 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  +   G + +    R   +   +  L R+E  +L  L  + G+ V +  +   ++G
Sbjct: 127 TNSPGQVLCGALCIDLAFRRVSLGERMVSLTRKEYAVLAELARHAGRVVTQQHLLKIVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               A + + +   I  LR+KL +       + ++  +GY +
Sbjct: 187 PSH-AGDSHYLRVVIGHLRQKLGDDPAAPRFIVTEAGVGYRL 227


>gi|325289382|ref|YP_004265563.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964783|gb|ADY55562.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G    F  DG       S++  + +      D+  ++  L       +
Sbjct: 4   ILILEDDENLSRGIAFTFEKDGYDAVSAGSIQDGKRMLEQHNIDLIILDLGL--PDGSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR +S +P+I ++        +     G DD + KP     + ARV A+ RR + 
Sbjct: 62  DLCKEIRTYSNIPIIMLTACDLETDEVSGLLVGADDYITKPFSLSVLRARVEALLRRTES 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +                   +GE   +P    E R+L +LM N G+ ++K QI S ++ 
Sbjct: 122 ESRHIIHSGKYKLDAELCKFFRGEEEEIPISATEYRLLSFLMTNAGQVLSKEQILSFLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
                V+EN +  +IS+LR KL +       + +   +GY   WN
Sbjct: 182 NEGNFVDENTLPVNISRLRAKLEDDPKNPQTIKTIHGIGYI--WN 224


>gi|302538254|ref|ZP_07290596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302447149|gb|EFL18965.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 222

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S++  +      W+      D+  ++  L   G     
Sbjct: 1   MVVEDERRLALALQRGLRSEGFSVDVAHDGPQGLWMACEHDYDLIVLDIML--PGLNGYR 58

Query: 63  LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA      I  ++         +  D+G DD ++KP  +  ++AR+ A+ RR   
Sbjct: 59  VCARLRAAGNESGILMLTAKDGEYDEAEALDTGADDFLSKPFSYLVLVARLRALGRRTGR 118

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R        V          G    L  RE  +LE L    G+ V K +I   ++  
Sbjct: 119 RAPRTMQFGDLLVDPARHLCSRGGTEIRLTAREFAVLECLARRAGEVVPKREILEQVWDS 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE H+S +R+K+    G   +++ R  GY +
Sbjct: 179 A-FDGDPNVVEVHVSAVRRKIDAPFGRSALETVRGAGYRL 217


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          DG  +              +   D+  ++  L        
Sbjct: 10  ILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVML--PDLDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ ++IR  S  P+I ++        +   + G DD + KP   RE+++RV A+ RR++ 
Sbjct: 68  EVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVEA 127

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        +++    R+  V+G +  L   E R+L +L+ N G  +   Q+ +
Sbjct: 128 TSLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLLT 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G ++   EE+ V  +++ LR+K+  +      + ++R +GY  
Sbjct: 188 KVWG-YEYRDEEHYVRLYVNYLRQKIEEDPSNPKYILTERGVGYRF 232


>gi|301054385|ref|YP_003792596.1| two-component response regulator [Bacillus anthracis CI]
 gi|300376554|gb|ADK05458.1| two-component response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 215

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDKKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|258650654|ref|YP_003199810.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258553879|gb|ACV76821.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++       GD G  +    S E        A  DV  ++  L   G   L 
Sbjct: 16  LLVEDDERIRLALGLALGDLGFQVRDAASGELALERLEVADVDVVLLDLML--PGVDGLT 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   +P+I  +        +   ++G DD ++KP+   E+ AR+ A+ RR +  
Sbjct: 74  VCRTLRARGDLPIIITTARSDTADVIAGLEAGADDYMSKPLVASELAARIRALLRRRRPV 133

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N      ++V      P             L R E R+L  L++  G  V + ++   +
Sbjct: 134 SNTTVQSYVQVADLEVWPMEGRVRRAGADVHLTRTEFRLLAELVSADGVVVTREELLHRV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G +D   +  +++ HI +LR+K+  +      + + R LGY  
Sbjct: 194 WG-YDYFGDTRLLDVHIRRLRRKVETDPDNPALITTVRGLGYRF 236


>gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
 gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V         + G  ++  ++      +  S + D+  ++  L       L 
Sbjct: 4   LIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRML--PELDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +   +R      P++ +S    +   ++   +G DD + KP    E    +  +      
Sbjct: 62  VIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRGG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   +++    R     G    L  RE R+LEYLM+N G+ V +T +   ++
Sbjct: 122 EIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             +    + NV++ HIS+LR K+        + ++R  GYS+ D N
Sbjct: 182 -EYHFDPQTNVIDVHISRLRSKIDKDFDPPLIHTERGAGYSLYDPN 226


>gi|326203672|ref|ZP_08193535.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986112|gb|EGD46945.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 258

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +  G      ++G ++     L        + + D+  ++  L        E
Sbjct: 32  LLVEDDTTLAFGIEYTLKNEGFNVSLAVDLAEARKALHTNKLDIVLLDVRL--PDGNGFE 89

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
             + IRA S++P+I ++        +   D G DD + KPI  +E+++R+          
Sbjct: 90  FCKEIRAVSKMPIIFLTSCNDEANVVMGLDLGADDYIPKPIRIKELISRINAVLRRNSAE 149

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  ++  I +         +G+   L   E ++L  L+ +  + +++  I   ++ 
Sbjct: 150 ANIASIIKSNDIEINVMQGKVMKRGQEVMLTAVEYKLLLTLIEHSEQILSRNTILEHLWD 209

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
           +  E +++N +  +I +LR+K+ +       + + R +GY 
Sbjct: 210 IDGEFIDDNTLSVYIRRLREKIEDNASSPVNILTVRGVGYK 250


>gi|220905834|ref|YP_002481145.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219862445|gb|ACL42784.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 253

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE--------AFL 53
            +L++D  L+++       ++G  +           + ++      AI+          L
Sbjct: 21  ILLVEDEELIRETVSLALMEEGYEVITAADGRQALDILNARVLHSQAIDSAGLDLMILDL 80

Query: 54  IGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +      L+L R+IR      P++ +S   S    +   + G DD V KP   RE++AR 
Sbjct: 81  MLPYINGLDLCRLIRREGCTLPILMLSAKGSEIDRVVGLEVGADDYVTKPFGMRELVARC 140

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRV 168
            A+ RR +                    E +     +   L  +E R+LE  M+   +  
Sbjct: 141 RALLRRQRAQTPPPVPILKFRDLQLYPQECRVLVRGQEVNLSPKEFRMLELFMSYPRRVW 200

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + Q+   I+G  D   +   V+ HI  LR+K+  +    + + + R  GY  
Sbjct: 201 PREQLLDKIWGT-DFVGDSKTVDVHIRWLREKIELDPSHPEYLLTVRGFGYRF 252


>gi|88800403|ref|ZP_01115968.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88776850|gb|EAR08060.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   + +         G  +  F+  +  +    +   D+  ++  L   G   L
Sbjct: 4   IVIVEDERQLAELERDYLKAAGYEVTLFDRGDTAQQWLETHEPDLLVLDLML--PGLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S VP+I  +        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 62  ELCRNLRRRSTVPIIMTTARVEEVDRLIGLEIGADDYLCKPFSLRELVARVKVILRRTHP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +    +       E+      L + E R+L  L  +  +  ++ QI   IY   
Sbjct: 122 EAAPPVSLNPILNEALAMVELGSHSVELTQVEVRLLALLQNHPRRIFSRDQIIDHIY-ED 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
              V +  V+SHI KLR+KL+      D + S    GY 
Sbjct: 181 RRIVSDRTVDSHIKKLRRKLQQLSEDHDFIHSVYGAGYR 219


>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    +P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           ++++D   +++        +G  +    S+E  E +  +    +  ++  L GK G    
Sbjct: 11  LVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLAWC 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + R      ++P+I ++        +   +SG DD + KP   RE++ARV A       
Sbjct: 71  RMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRSYG 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R   G ++V               L   E R+L   + N  +  ++  +   I+G
Sbjct: 131 GTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                VEE  V+ HI +LR+ L +      +++ R  GY 
Sbjct: 191 R-QSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGYR 229


>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 7   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 246

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   ++D         G  ++        + L    + D+  ++  L    G  V
Sbjct: 4   ILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ +S     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +         L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAICFENTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|327470525|gb|EGF15981.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 238

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMVKKMLEQWGFQVVAVEDFMDVLAVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + +    R   V      L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A +++ + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231


>gi|196042000|ref|ZP_03109286.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027134|gb|EDX65755.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 215

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +G  +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V K  H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKTFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
 gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
          Length = 218

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +++            S    +++ ++  L       L
Sbjct: 3   ILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGL--PRMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + ++A +   P++ ++   +    +   D+G DD + KP    E+ AR+ A + R  
Sbjct: 61  QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   IR+    +  E QG+   LPR+E  +L  L+   G+ + + ++  A+YG
Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +DE VE N +E H+  LRKK       + + + R +GY +D 
Sbjct: 181 -WDEEVESNALEVHVHHLRKK----FFPELIRTVRGVGYLVDK 218


>gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator
           [Escherichia coli ETEC H10407]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A    P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N      + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLE 222


>gi|225026361|ref|ZP_03715553.1| hypothetical protein EUBHAL_00610 [Eubacterium hallii DSM 3353]
 gi|224956301|gb|EEG37510.1| hypothetical protein EUBHAL_00610 [Eubacterium hallii DSM 3353]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 91/225 (40%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M + I+D  ++ +       ++   +E   + +    L  S   D+  ++  L       
Sbjct: 1   MILFIEDDIMLSEEISEFLKENDFEVEVVGNGDDALKLLQSRIYDLCILDIGL--PDCSG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
             L + IR   + P+I  + Y + +  +    +G DD V KP         I +++    
Sbjct: 59  FLLCKKIRQFYRNPIIIFTAYENEEDIVTGLMAGADDYVTKPCSLRVLRSRIFSQLRRKQ 118

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++      +G + +         +G    +   E R+   L+ N G+ + +  +   
Sbjct: 119 WSEEIETEIIRSGDLVIDVVHNMIFKKGRELSIKDTEFRLCYMLVRNDGRIMPRELLLER 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +  +E N +  ++S+LRKKL    G   +++ + +GY  +
Sbjct: 179 LWDMDEHFIENNTLSVYVSRLRKKLGVYNGVSYIETIKGIGYRWN 223


>gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +   +++  ++     +L      D+  ++  L   G    
Sbjct: 3   ILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVML--PGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R   Q P++ ++   ++   ++  + G DD ++KP  + E LAR+ ++ RR   
Sbjct: 61  ELLRRLRKEKQTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +         + V    R  +       L  +E  +L+ L   +G+ + +T I S I+ +
Sbjct: 121 AVKDVLRIADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ + +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAVKRLRAKIDNSFETKLLHTVRGMGYVLE 220


>gi|119385327|ref|YP_916383.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119375094|gb|ABL70687.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +           L      D+  ++      GE   
Sbjct: 12  ILVVDDDERIRSLLRRFLMRNDFLVTTARDAAHARRLLDGLDFDLIVLDVM--MPGEDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R     P++ ++        ++ F+SG DD + KP   RE+L R+AAI RR+  
Sbjct: 70  TLTRDLRKRMTTPILLLTAKGETGDRIEGFESGADDYLPKPFEPRELLLRIAAILRRMPT 129

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +        P+R  +D  +         L   E+ +L  L     + V+++ +   +
Sbjct: 130 AEAKGPKFLSLGPLRYDADKGELWQGDAPLRLTGTEQALLRRLADTPRQPVSRSTLIEDL 189

Query: 178 YGLFDEAV---EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                E      E  ++  I++LR+K+  +      + + R  GY +
Sbjct: 190 GRSHSEEAGENSERAIDVQITRLRRKIEPDPKEPRYLQTVRGTGYML 236


>gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      L    G  +    S         +    +  ++  L   G    
Sbjct: 7   ILIVEDDNGINTLLARLMEKKGYGVVQAYSGTEAMLHIEAKDFQLVILDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR   Q+P+I IS     +  ++  + G DD + KP    E+ ARV +  RR   
Sbjct: 65  ELIKNIRKTKQMPVIVISAKIDKKDKIELLNLGADDYITKPFDIEEVCARVYSNLRRYMK 124

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N             I +  + ++  V G+      RE  ILE L+ +  K  +K  +F
Sbjct: 125 FSNNNVSVNENLTYKDIVLNKETKEVCVNGKNITFTAREFEILELLLTHPKKVFSKANLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +++G  +   ++N V  H+S LR KL +     + +++   +GY I
Sbjct: 185 ESVWGE-EYLGDDNTVNVHMSNLRSKLQKANPKEEYIETIWGMGYKI 230


>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +I+D   + +     F  +G  ++ F + +         + D   ++  +    G +
Sbjct: 3   LIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDGLE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAA 114
             +L R  +  S  PLI ++   +    +   + G DD V KP   RE           +
Sbjct: 63  FCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIRRS 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S  + +   + +  +  +  ++G+   L   + ++L  L+   G+ +++  I 
Sbjct: 123 KSYHFPTSKPKYKFKDLEIIPEKFEVTIKGQHINLTITQFKLLLALVNAEGRVLSRDYIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+  +D+ + +  ++ HI KLR+ L +      + + R +GY  +
Sbjct: 183 ENIW-KWDKDIYDRTIDVHIKKLREVLGDYGN--CIKTVRGVGYKWE 226


>gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D     +       + G  ++  ++     +L      ++  ++  L    G +V
Sbjct: 3   ILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R     S++ ++      + +       +    +            R         
Sbjct: 63  LELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSDHP 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S        + +          G+   L  +E  +L YLM N G  +++TQI S ++ +
Sbjct: 123 ASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVWDM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 183 -NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEK 223


>gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6]
 gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6]
          Length = 234

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      +         R +V  ++  L       L
Sbjct: 5   ILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGL--PVMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  SQVP+I +S        ++  D G DD + KP         I   +     
Sbjct: 63  EVCRRIRGWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRHSSH 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G +++    R   ++G    L   E  +L     + GK +    I   +
Sbjct: 123 IQANDEPVLHFGELQIDRSRRIVTLKGHEVHLTPTEYELLRLFTNHVGKVLTHRMILRTV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +G  +   E   +   I++LR+K+         + ++  +GY  
Sbjct: 183 WGA-NYEQELPTLRVFITQLRRKIEPDPAQPMYILTEPGIGYRF 225


>gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++    +     +G +++         +       D   ++  L        +
Sbjct: 4   LVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIML--PRVNGYD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +RA     P++ ++         D  D G DD + KP  +  + AR+ A I R   
Sbjct: 62  VCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGHI 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   GR     G    L  RE  +LEYL+ + G+ V+K +I + ++  
Sbjct: 122 PRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWAE 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++ NVVE +I  LR+K+        +++ R  GY +
Sbjct: 182 H-FDLDPNVVEVYIGYLRRKIDTPFRVRSIETVRGAGYRL 220


>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  +++D        +G  +      E  +         +  ++  L        E
Sbjct: 6   LVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLML--PKISGEE 63

Query: 63  LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + I  +  ++V +I ++   S    +     G DD V KP    E++AR+ A+ RR  
Sbjct: 64  VCQWIRAQERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLRRGG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +     +  + GE+ PL + E  +L Y M N    +++ Q+   I+  
Sbjct: 124 QFCQKISHEGLVIKPRKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQIHPD 183

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  + +  +++HI KLR+K+         + + R +GY  
Sbjct: 184 DEADILDRTIDAHIKKLREKIETEPKKPQRIVTVRGMGYQF 224


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   S +    +    + +   ++      G    E
Sbjct: 13  LVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVM--MPGMDGFE 70

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR  V
Sbjct: 71  LLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 130

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +        IR        D  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 131 TETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILDN 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+        +++ R +GY +
Sbjct: 191 VW-HYDFGGDGNVVESYISYLRRKVDQ-GEPQLINTVRGVGYVL 232


>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis MSMB43]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E  + L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
               R       +P+I ++     Q  +   + G DD V KP   +E++A      R  A
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +                 +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|161522839|ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348324|ref|YP_001941520.1| two-component system aerobic respiration control protein
           [Burkholderia multivorans ATCC 17616]
 gi|160346392|gb|ABX19476.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189338462|dbj|BAG47530.1| two-component system aerobic respiration control protein
           [Burkholderia multivorans ATCC 17616]
          Length = 253

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       D+ + +      +       S   D+  ++  L   GE  ++
Sbjct: 10  LVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILD--LRMPGEDGVQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
           + R +R  S +P+  +S        +   + G DD + KP  +RE+LARV          
Sbjct: 68  IARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGAT 127

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                R K +     +G        R  +  G    L   E  +L   +A  G+ +++ Q
Sbjct: 128 APATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRDQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  +      + V +  ++  I +LR+K+  +      + + R  GY +D 
Sbjct: 188 LLES--SRLYDDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDV 236


>gi|160893557|ref|ZP_02074341.1| hypothetical protein CLOL250_01111 [Clostridium sp. L2-50]
 gi|156864542|gb|EDO57973.1| hypothetical protein CLOL250_01111 [Clostridium sp. L2-50]
          Length = 238

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 92/230 (40%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +   +   ++L   + L      D+  +   ++       
Sbjct: 6   ILLVEDDFALAMGTEYTLKTENYEVVKASNLAEAKALLQ---PDIDLVLLDVMLPDGNGY 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R IR H    P+I ++        +   + G DD + KP   +E+L R+A I RR K
Sbjct: 63  DFCRYIREHDNYVPVIFLTAVSDEVNLVQGLELGADDYIAKPYRVKELLTRIAVILRRQK 122

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +++              G  R+ +       +         E R+L+ L+ +  + + +
Sbjct: 123 YNSDTKEKKEETEADIIFGHTRLDNRLYKIYQKERNVDCTPSEFRLLKELVTHADQVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++ + +  V++N +  +I +LR KL        + + R +GY+ 
Sbjct: 183 KQLIERLWDVDEAFVDDNTLSVYIKRLRDKLEED--AVYIQTVRGIGYTF 230


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   +         + R D   ++      G     
Sbjct: 20  LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVM--MPGMDGFG 77

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 78  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 137

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+++              D R+    GE   L   E  +L Y M N G  ++K +I   +
Sbjct: 138 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 198 W-NYDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 238


>gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 236

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +  +       +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKANPSSYDIVTLDLNLPKKDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170
           +  +   +  I+     +  ++  +   +            +E  +L  +     +  ++
Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G       +         +   D+  +   ++      +
Sbjct: 3   ILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTIN-DIELLILDIMMPEVDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +I+R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  +
Sbjct: 62  QVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRSTM 121

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +         I          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 182 RVW-KQESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKID 227


>gi|315646856|ref|ZP_07899971.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
 gi|315277786|gb|EFU41110.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G       S             D+  ++  L    +  L
Sbjct: 6   ILIIEDEGPIADLLAYGLAMEGFETRTAASGAAGFRELEDFSPDLLLLDWML--PDQSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
           ++ + + A   +P+  I+    +   +   + G DD + KP                   
Sbjct: 64  DICKKVTADYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A    R +          I +  + R  +  G +  L  +E  +L  L  +RGK   +++
Sbjct: 124 ANHVEREEAQEVVIRFKCIEIIMEERLVKKDGSLIDLTPKEFDLLMTLYRHRGKIYTRSE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   ++G +D   +   V++HI +LRKKL      D + +   +GY  + 
Sbjct: 184 LLDLVWG-YDFMGDTRTVDTHIQRLRKKLD---ASDLITTVFGIGYKFEK 229


>gi|167770186|ref|ZP_02442239.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM
           17241]
 gi|167667508|gb|EDS11638.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++       D+G  +         E L    R  +  +   ++       
Sbjct: 10  ILVAEDDYSLRELMSDFLSDNGYQVYRAKDG--AEALIQIERSHIDLMICDIMMPELDGY 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
            L R +R      P+I ++   +L+     F +G DD + KPI   E +    A + R  
Sbjct: 68  GLTRELREAGFDLPVIMVTARETLEDKHMGFLAGTDDYMVKPIDFEELLWRVSALLRRAQ 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +  E G I++  D      +     LP++E ++L  L+   GK   + Q+   I+G
Sbjct: 128 IASGHTLEIGGIKLDYDALSVTTEQGTDVLPKKEFQLLFKLLNTPGKTFTRQQLMDDIWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           L D   +E  V+ HI +LR+K      F  + + R LGY  + 
Sbjct: 188 L-DSDADERTVDVHIKRLREKFGGFSQFK-IVTVRGLGYRAEK 228


>gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
 gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++   +R+     P+I ++    ++  +  F+ G +D V KP        R        I
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +   + NV++  + +LR K+        + + R +GY ++ 
Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLEE 226


>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 236

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       + E      S    D+  ++  L   G   
Sbjct: 5   LILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVML--PGMDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL RIIR H      P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FELCRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +    + E     G + +        + G+   +   E ++L  L+  +G+  ++ ++
Sbjct: 123 RDRRQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            S ++ + D+++    +++HI+++R+KL        + + R LGY  + 
Sbjct: 183 LSDVWDV-DKSINTRTIDTHITRIREKLGETG--RMIKTVRGLGYKFEE 228


>gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
 gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
          Length = 251

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +++D   +++       + G  +E F           S    +  ++  L    G  +
Sbjct: 32  IYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLESKVPALILLDIMLPNEDGLDI 91

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  +  ++VP+I ++   S    +   D G DD ++KP    E+++RV A      
Sbjct: 92  LTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALLRRTT 151

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++     I V +D     V G++  L  +E  +L+YL+ N+G  +++ +I + ++
Sbjct: 152 NAQEESQIAYENILVDNDKHAVYVDGKLCELTYKEFELLKYLVINKGIVLSRDKIMNQVW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD   E   V+ HI  LR+KL        + + R +GY ++
Sbjct: 212 G-FDYEGESRTVDMHIKTLRQKLGEAGSH--IKTVRNVGYMVE 251


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G  ++  +  +       SA  D + ++           
Sbjct: 3   ILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIM--MPRRNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +R+   + P++ ++   S+   +   D G DD + KP    E+LAR+     +R 
Sbjct: 61  EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +R+ +             L  RE  ILEYL  N+GK +++ QI + ++ 
Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD +   NVV+ +IS LRKK+ +  G   + +    G+ +
Sbjct: 180 NFDYSGGTNVVDVYISYLRKKIDSGEGKKLIRTVWGTGWML 220


>gi|169335564|ref|ZP_02862757.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258302|gb|EDS72268.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +++D   + +            ++ F + E         +  +  ++  L    G   
Sbjct: 5   IYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGIDA 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L+L +    +  +P+I +S   S    ++  + G DD V KP    E+ +R+ ++  R  
Sbjct: 65  LKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRRSY 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           KV +N      I +  +       GE   L ++E +IL Y++ N+G+ V + ++ + ++G
Sbjct: 125 KVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +D   E   ++ H+  LR K+      +  + + R +GY +
Sbjct: 185 -YDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225


>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
 gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
          Length = 255

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G ++           +      D+  ++           
Sbjct: 36  ILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVM--MPRLDGF 93

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
              + IR     P++ +S        L  F+ GVDD V KP   +     I A +     
Sbjct: 94  SACKEIRKFKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKS 153

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +   + +    RD  + GE   L  +E  +L YL+ N+   + + ++   +
Sbjct: 154 GNEPVGETVKFEGLEINFTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEV 213

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   ++  +++HI  LR  L        + + R +GY  
Sbjct: 214 WG-YDFFGDDRTIDTHIKMLRNNLGPY--RKFIVTLRGMGYKF 253


>gi|154246098|ref|YP_001417056.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160183|gb|ABS67399.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 261

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +         E   ++ R D   ++  L       L
Sbjct: 29  ILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQRIDFVVLDLML--PDASGL 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 87  DLCRALRNRSKIPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRTGA 146

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           F+         R  + +G    L   E  +L   +   G+ +++ Q+ 
Sbjct: 147 AEPEPVAATAFRFARFRAEPELRRVTDAEGVEVALTGAEFDLLMAFLERPGRILSREQLL 206

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               G  +    +  V+  +S+LR+KL ++  F  + + R  GY +
Sbjct: 207 DITRGR-EAGPFDRSVDVLVSRLRRKLGDQGAFQILKTLRNGGYQL 251


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         +D  S+   +          S    ++ ++  +    +  L
Sbjct: 3   ILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMV--PKKDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   SQ+P++ ++   +    +   ++G DD + KP    E+LARV A+ RR +
Sbjct: 61  TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+          G    L  +E  +LEYL+ N  K +++  I   ++ 
Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R  GY +
Sbjct: 181 -YAFDSFTNIIDVYVNYLRKKVDKEYSTKLIHTVRGQGYIL 220


>gi|309778021|ref|ZP_07672962.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914211|gb|EFP60010.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 227

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D   +  G +     +G  +   +  +           D+  ++  L        +
Sbjct: 4   LFVEDDQAIAMGLVYTLKKEGYEVVWCDCKQAALQQLHRETFDLLLLDVGL--PDGSGYD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLKV 121
           +    ++   VP++ ++        +   D G DD + KP    E+     +   R  + 
Sbjct: 62  ICTYAKSRQDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRIRSVQRRYHRQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   + ++        + E   L   E R+L  L+ +  + ++++Q+   I+ + 
Sbjct: 122 EEDIIQIQYLSIYPKQGKVYKEQEEILLTALEYRLLMVLVNHPQQVLSRSQLLEGIWDVA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + V +N +  ++ +LR+KL  +      + + R LGY ++
Sbjct: 182 GDFVNDNTLSVYMKRLREKLERDPKNPTIIVTVRGLGYRLE 222


>gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 236

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++       +P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKMIDANGLILDPVSQRVSFGDSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|229160850|ref|ZP_04288840.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
 gi|228622587|gb|EEK79423.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++   S E           D+  ++  L   G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227


>gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118]
 gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +G  +      +    L      D+  ++      GE  L
Sbjct: 11  ILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLM--MPGEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R      E  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 TQEAPGSPASDSAVVTFGPFTFDLGARTLRKDDEDQPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|310778431|ref|YP_003966764.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747754|gb|ADO82416.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   ++      F  +G  +E  +           ++ D+  ++  L    G+   
Sbjct: 4   LIVEDDLEIQQLVSYFFSKEGYGVETASDGLEGLRFLKKSKPDLVILDIMLPSLDGKNFT 63

Query: 62  ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +      P+I + +    ++  L+  + G +D + KP   RE++ R         
Sbjct: 64  KIVRELPEEYGNPVIIMLTAKTEIEDVLEGLEIGANDYMKKPFDPRELILRSKKFLNNGA 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +     + V  D      +G    L ++E  +L  L+ N+G  +++ +I   ++  
Sbjct: 124 KVSKKYIFKDVVVDDDRHLVTEEGVEVELSKKEYDLLHLLIRNKGLVLSREKILDKVWNT 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              A +   V+ +ISKLR+K+ +      + + + +GY ++ 
Sbjct: 184 SYYAGD-RSVDIYISKLREKIVSISKN--IKTVKGVGYKLEE 222


>gi|308175743|ref|YP_003922448.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens DSM 7]
 gi|307608607|emb|CBI44978.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555717|gb|AEB26209.1| two component transcriptional regulator, winged helix family
           protein [Bacillus amyloliquefaciens TA208]
 gi|328914103|gb|AEB65699.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++G  +           L  + +  ++ ++      G   LE
Sbjct: 10  LIVDDEPAIIDFLTMGLVNEGFEVMSAADGMSAMNLVKTFQPHIAVLDVM--MPGMDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121
           L R+++  S   +I ++    ++  +     G DD + KP    E+LAR+   I  +   
Sbjct: 68  LSRMLKKTSNTAVIMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPH 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    GP R+    R+     +   L   E  +L++L+   G  ++KT+I   ++G +
Sbjct: 128 LFDEVVLGPFRIDDRSREIHYNEQPLKLSATEYELLKFLVLRHGTVLSKTRILDQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E+N+VE +I  LR+KL++K     + + R  GY +D
Sbjct: 187 DFYGEDNIVEVYIRSLREKLKDK-EHKVIRTVRGAGYRVD 225


>gi|291486019|dbj|BAI87094.1| hypothetical protein BSNT_05286 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 237

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   +  + D+  ++  L        
Sbjct: 4   ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINL--PFFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR   
Sbjct: 62  YWCRQIRTISNAPIIFISARIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + +     R+        + D  + E         ++E ++L   +    K V++ ++
Sbjct: 122 EYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQKEFQLLSIFVREHKKIVSRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LR+KL N    D + + R  GY    N
Sbjct: 182 LEALWDDVDF-VDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVN 230


>gi|303235216|ref|ZP_07321835.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302493703|gb|EFL53490.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 218

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G         +    +  +   +++ ++  L       L
Sbjct: 3   LLVVEDDQMIREGICEFLSEFGYKTYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P I ++ +   +  ++ F S  D  + KP     +  R+ ++ ++   
Sbjct: 61  DVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++   
Sbjct: 121 NNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216


>gi|227529596|ref|ZP_03959645.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350495|gb|EEJ40786.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 238

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +G   E        E   S+A  +   I   L    +  +
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEGWQYEFAYDGVEAEEKFSAAPHEWDVILLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++   IR  S   PLI ++   S    +   + G DD V KP               R  
Sbjct: 63  QVAADIRRISTTVPLIMLTARDSESDQVLGLEIGADDYVTKPFSPITLIARIKALQRRSQ 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           L+         +   +                     V  L  +E  +L+ L +   +  
Sbjct: 123 LSATQGAQHSNQDRFDIKTKHFKMDTKTREVYMYGKPVKDLTPKEFDLLKTLASKPRQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++Q+   ++  ++   +E  V++HI KLR+KL   +G   + +   +GY  D
Sbjct: 183 TRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLEA-VGPQVIQTVWGVGYKFD 233


>gi|197105366|ref|YP_002130743.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196478786|gb|ACG78314.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 249

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D      G  G  +E        E +      D+  ++  L   GE  L
Sbjct: 18  ILMVDDDPGIRDVVSDFLGRHGYKVETAADAPEMERVLERGPVDLIVLDVML--PGEDGL 75

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +  A +  P+I +S        +   + G DD + KP + RE+LARV A+ RR +
Sbjct: 76  AICRRLTTADNAPPIIMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARVRAVLRRAE 135

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N    G    F               QG V  L   E  +L   +    + + + Q+
Sbjct: 136 QRTNGGALGAGCEFAGWRLDLVRRELRSPQGVVVNLSSGEFSLLRAFVERPQRVLTRDQL 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                G  D    +  ++  IS+LR+KL +   G D + + R  GY  
Sbjct: 196 LEFARG-PDSDAFDRAIDVQISRLRRKLDDGGGGHDLIRTIRNEGYMF 242


>gi|169349485|ref|ZP_02866423.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
 gi|169293560|gb|EDS75693.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
          Length = 271

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +             ++   N+      +       ++ ++          +
Sbjct: 39  ILVVEDEIEIAKAIEIYLKSQNYNVYIANNGLEGLKIIEQHPIHLAIVDIM--MPVMDGI 96

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+   IR     P+I +S        +   + G DD V KP                  +
Sbjct: 97  EMTMKIREQYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 156

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              I  + + + ++   G + +  D ++  + G++  +   E +ILE LM   G+  +  
Sbjct: 157 FLNIIDQKQENTHKYIVGGLELDIDTKEVIIDGKIVKVTPIELKILELLMEKPGRVFSSE 216

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           QI+  ++   + A+    V  HI  LR+K+  N      +     +GY I+ 
Sbjct: 217 QIYENVW--HEAAINTETVMVHIRNLREKIEINPSNPQYLKVVWGVGYKIEK 266


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  +      E    L +    ++  ++           
Sbjct: 4   ILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVM--MPKLNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++     Q  ++  ++G DD + KP   RE+LARV AI RR + 
Sbjct: 62  AMLARLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +            + +    +     GE+  L   E  +LE L+ N G+ V+K+Q+ 
Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLS 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             + G   E  +   ++ H+S LRKKL     G     + R  GY
Sbjct: 182 ELVLGKKLEPFD-RAIDMHLSNLRKKLPERTDGQPRFKTVRGRGY 225


>gi|332652940|ref|ZP_08418685.1| response regulator DrrA [Ruminococcaceae bacterium D16]
 gi|332518086|gb|EGJ47689.1| response regulator DrrA [Ruminococcaceae bacterium D16]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++     +    G   +   S         +A  D   ++  L        
Sbjct: 5   ILIVDDEPALQSMVQEILSQAGYETKTALSCAQALEQFRTAVPDAVLLDVML--PDGDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLK 120
            L   +R    VP++ +S     ++ L     G DD + KP      +L   A + R  +
Sbjct: 63  SLFGKLREIRDVPVLFLSARDEDESRLRGLGLGADDYITKPFLPQELLLRLRAVLRRVYR 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A  G   +          G+   L  +E  +L  L   RG  V    + SA++  
Sbjct: 123 EEVCLARLGEAEINWGKGTVRRGGQETALTAKEFALLRKLWEARGNIVTIDALCSALWDG 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 EN +  HI +LR+K+  +      + + R LGY +
Sbjct: 183 P-LVGYENTLMVHIRRLREKVEADPSHPQFLLTVRGLGYRL 222


>gi|290769853|gb|ADD61625.1| putative protein [uncultured organism]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++     E    L ++ R D+  ++  L       +
Sbjct: 3   LLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNL--PKVNGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + R +R    + P++ +S    +   ++  D+G +D + KP H  E+ ARV +   R+ 
Sbjct: 61  TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +   +  R     G+  PL R+E  +LEYL+ ++G+ V++ ++   ++ 
Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   N +  HIS LRKKLR  LG+DP+ ++   GY ++ N
Sbjct: 181 SS-VDAFSNSIRVHISALRKKLRTALGYDPIRNRIGEGYELEEN 223


>gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
 gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        + +      S      +  ++  D+  ++      GE  L
Sbjct: 8   ILIVDDHRDIRESLARYLTKNNMRTTVAESAAAARKVLKNSSIDLVVLDIM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +   +Q P+I ++        +   + G DD V KP + RE+LAR+ A+ RR   
Sbjct: 66  SLCRHLVETNQAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAVLRRATS 125

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +       +              + +    PL   E ++L   +      +++ Q
Sbjct: 126 VPRERDPIETEKLAFNGWMLDTARRELIDPEQVAVPLSSGEFQLLLAFLKRPRVVLSREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G     V +  +++ +S+LR+K+  +    + + +    GY+ 
Sbjct: 186 LLDLTSGRS-LGVFDRSIDNQVSRLRRKIEIDPKSPELIKTVWGGGYTF 233


>gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 263

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +        S      +      DV  ++  L   G   LE
Sbjct: 34  LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGL--PGIDGLE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR ++ 
Sbjct: 92  VCRQLRTFSDAYVVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMR 151

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +    R+  + GE   L R E  ILE L A  G  +++ Q
Sbjct: 152 PVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQ 211

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 212 LLDIVREGP-WVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259


>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
 gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + +       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   +++P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 66  SICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKV 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +    E G  ++    R+   +G    L   E  +L+ L+ +  + +++ +
Sbjct: 126 VEAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|327399045|ref|YP_004339914.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327181674|gb|AEA33855.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 4/218 (1%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLE 62
           +I+D   + +         G  ++ F++             D+  ++  L G +GE  +E
Sbjct: 7   VIEDDHKIAELIEFTLSSAGYEVQSFDNANDALIYIKQDLPDLIILDLMLPGLQGEDFIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L         +P++ I+            + G DD + KP   + +LA+V AI RRLK  
Sbjct: 67  LVSSKEKLKDIPILIITAKTQDDLFAQLLNKGADDFLVKPFSTKVLLAKVNAILRRLKNR 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +      I +  D     V  E   L + E  IL+  + N  K  ++ +I  +++G ++
Sbjct: 127 TSVISVCGIELNEDEYSILVNSEPIELTKTEFSILKLFLENPNKVFSRDRILESVWG-YN 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V +  ++ H+S LRKKL+ K     + S   +GY  
Sbjct: 186 ANVSDRTIDVHLSNLRKKLKEKGS--RIISIPRVGYKF 221


>gi|317471402|ref|ZP_07930756.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901153|gb|EFV23113.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V         + G   E   S             D+  ++  L  K     
Sbjct: 4   ILIIEDNQDVSRMLSEFLSESGYQPEAAFSGTDGLIKLREKSYDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I IS    + T +D    G DD + KP    E+ ARV +  RR   
Sbjct: 62  QVLRELRGFSNIPVIVISAKDIVGTKIDLLKLGADDYITKPFDLGEVEARVLSNLRRQSS 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  + +T   R     +D +     G+   L  +E  IL+ LM +  K   K  ++  ++
Sbjct: 122 SKVKEQTLQYRDLVLSKDAKSVLLGGQDLELTAKEYAILQLLMEHPKKVYTKANLYETVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              +   ++N V++HIS LR KL+        +++   +GY +
Sbjct: 182 -EDEYLGDDNAVKTHISNLRNKLKKASPLEQYIETVWGIGYRM 223


>gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+  G +     +G +++   +      L  S +  +  ++  L        
Sbjct: 3   LLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGL--PDRDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R  +   P++ ++   +L+  +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  QLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   +  +   L  +E  +L  L+    + V +  +   +Y 
Sbjct: 121 GRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E HI  LR+KL    G D + + R +GY ++ 
Sbjct: 181 WQD-DTGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLEE 218


>gi|300723580|ref|YP_003712885.1| response regulator in two-component regulatory system with BaeS
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630102|emb|CBJ90739.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus nematophila ATCC 19061]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +                +         + D+  ++  L   G   L 
Sbjct: 11  LIVEDEPKLGRLLVDYLQSADYQTAWLKRGDEVIDHVQKYQPDIILLDLML--PGLDGLS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 69  VCREIRKFSDIPIVMMTAKTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYRP 128

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +         +  +         V  L   E R+L+ + +  G+  ++ Q+ + +Y   
Sbjct: 129 QDIISEQGALSIDENHFQARYLERVLELTPIEFRLLKIMSSQPGRVFSRDQLLNNLYNDH 188

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + S   LGY  +
Sbjct: 189 -RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228


>gi|293381660|ref|ZP_06627641.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290921707|gb|EFD98728.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 7   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 67  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 126

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A T                             V  L  +E  +L  +     +  
Sbjct: 127 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVF 186

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 187 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 237


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 18/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  +   D+  ++  L        E
Sbjct: 5   LVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLML--PEMSGEE 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + I    +  P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 SNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S    +               P  +        V  +   L  +E  +++YL+ +  + +
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G FD + +  +V+  I+ LR+K+  +      + + R  GY  
Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEF 234


>gi|30022904|ref|NP_834535.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|206969682|ref|ZP_03230636.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218231548|ref|YP_002369645.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218900007|ref|YP_002448418.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903354|ref|ZP_04067485.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910691|ref|ZP_04074502.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923592|ref|ZP_04086872.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228942018|ref|ZP_04104561.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955112|ref|ZP_04117127.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228961108|ref|ZP_04122734.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967956|ref|ZP_04128966.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974949|ref|ZP_04135510.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981542|ref|ZP_04141839.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|229048543|ref|ZP_04194104.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229112300|ref|ZP_04241839.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229130118|ref|ZP_04259079.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229147408|ref|ZP_04275757.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229153043|ref|ZP_04281224.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|229181156|ref|ZP_04308488.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229193119|ref|ZP_04320074.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|296505302|ref|YP_003667002.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29898463|gb|AAP11736.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|206735370|gb|EDZ52538.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218159505|gb|ACK59497.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218545331|gb|ACK97725.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228590383|gb|EEK48247.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228602347|gb|EEK59836.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228630463|gb|EEK87111.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228636090|gb|EEK92571.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228653333|gb|EEL09210.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228671140|gb|EEL26445.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228722807|gb|EEL74191.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228778221|gb|EEM26491.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784802|gb|EEM32820.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228791737|gb|EEM39329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228798551|gb|EEM45538.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804622|gb|EEM51226.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817687|gb|EEM63769.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228836061|gb|EEM81422.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848959|gb|EEM93802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228856315|gb|EEN00844.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|296326354|gb|ADH09282.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|326942620|gb|AEA18516.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 226


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   +           G  +      +    +   +  D+  ++  L    G +V
Sbjct: 6   ILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIMDGWEV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       +P+I ++     +  ++  + G DD V KP    E+ AR+  I RR  
Sbjct: 66  CRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRAH 125

Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ + ET  +       D      +     L   E  +++ LM N  K V++ Q+ + +
Sbjct: 126 PASPQNETIKLGKLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLAKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G      E   ++ HIS+LR K++     F+ +++ R  GY +
Sbjct: 186 WGT--YLGETRTIDVHISRLRTKVKKAGLNFNLIETVRHRGYRL 227


>gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630]
 gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291]
 gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile]
 gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291]
          Length = 234

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G  +    + E    L  S    +  I   ++   +   
Sbjct: 9   ILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST---IDLIILDVVMPVKTGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  +  P++ ++        +  F +G DD ++KP  + E+++RV ++ RR  +
Sbjct: 66  VACNEIREKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + +             V  D +D  + GE   L   E  IL  ++ NR K  +   +
Sbjct: 126 YQGKEKEREPNILKTKELCVNLDTQDVTLNGEPVFLTTIEYSILILMLKNRKKVFSSENL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +  I+         N +  HI  LRKKL         + +    GY ID
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYID 234


>gi|311111737|ref|YP_003982959.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943231|gb|ADP39525.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 4/214 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   + +    +   +G +     +             D+  ++  L   G+  +E+  
Sbjct: 12  DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLML--PGKSGIEVCE 69

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            IR+ S VP+I ++     +  +   ++G DD + KP  H E++AR+ A  R  +     
Sbjct: 70  QIRSSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLV 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G   +  DGR  + +G   P+   E  +L  L+   G+ +++ ++   ++G  D  V
Sbjct: 130 VRVGDTIMDMDGRTLKYKGVEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--V 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +++V  H+ +LR K  +      + + R +GY 
Sbjct: 188 SDSLVNVHVQRLRAKFTDIGAEQVIQTVRGVGYK 221


>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
 gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 257

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       + G S++        +        D+  ++  L   GE  L
Sbjct: 9   ILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLML--PGEDGL 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A +Q+P+I ++        +   + G DD V KP + RE++AR+ A+ RR  
Sbjct: 67  SICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQP 126

Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   A T    +            R     GE   L   E  +L+ L+ +  + +++ +
Sbjct: 127 HTLPGAPTPEDEIVAFGRVKVNLGTRVLVRDGEEIQLTTGEFSLLKVLLTHPRQPLSRDK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +     G  +  V +  ++  +S+LRK + +       + +    GY  
Sbjct: 187 LMELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 234


>gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 234

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   +       S+   ++ +           D+  ++  L        
Sbjct: 5   ILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIML--PEIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ +S        +     G DD + KP    E+ ARVA   +R K 
Sbjct: 63  AVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N +     I  + +            +  E   L  +E  +L  L  N  K   K +++
Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +     N +  H+ +LR+KL++       + +    GY  
Sbjct: 183 ENVWNQDNLEGN-NTITVHVKELRQKLKDNVKNPKYIQTVWGTGYKF 228


>gi|229493212|ref|ZP_04387004.1| KDP operon transcriptional regulatory protein KdpE [Rhodococcus
           erythropolis SK121]
 gi|229319943|gb|EEN85772.1| KDP operon transcriptional regulatory protein KdpE [Rhodococcus
           erythropolis SK121]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   ++        +    DV  ++  L        
Sbjct: 4   ILVVDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAERPPDVVVLDLGL--PDMDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+   +R     P+I +S        ++  D+G DD V KP    E LARV A  RR   
Sbjct: 62  EVLAGLRGWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGTS 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S    ET    V    +    +GE   L   E  +LE L+ NRGK V + ++   +
Sbjct: 122 AADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLREV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G      E + +  ++++LR+KL +       + ++  +GY  
Sbjct: 182 WG-PAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRF 224


>gi|254470046|ref|ZP_05083450.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211960357|gb|EEA95553.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD + ++D      G++G  +      E      S    D+  ++      GE  +
Sbjct: 14  ILLIDDDSRIRDLLNRFLGENGFRVTVAKDAEEARRRLSGLEFDLLILDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R    VP++ ++    ++  ++  ++GVDD V+KP   RE+L R++AI RR   
Sbjct: 72  ELAKDLRRSKAVPILMLTARSEIEDRIEGLEAGVDDYVSKPFEPRELLLRISAILRRGGP 131

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP +  ++  + +   E   L  RE++IL       G+ VA+T +    
Sbjct: 132 KPKMKLEVLSFGPFQYNAERGELKRNDEHVRLTDREKQILNTFAEKPGQTVARTDLV--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
               D ++ E  ++  +++LR+K+  +      + + R +GY +  N
Sbjct: 189 --GADASLGERTIDVQVNRLRRKIEEDPGNPLYLQTVRGIGYRLITN 233


>gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        ++G  ++   + E   +   S   D++ ++  L   G   +
Sbjct: 3   LLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGL--PGMSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R      P++ ++   + Q  ++    G DD + KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G + +  + +   V  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL   LG   +++ R  GY  + 
Sbjct: 180 PGDDERDPNVIEVLVGRLRRKLEAMLGGKLIETVRGQGYMFNE 222


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++G      ++G+++           L+    ED+  +   ++      ++
Sbjct: 8   LVVDDDKEIREGITIYLKNEGMNVFQAKDGIEA--LERLNEEDIHLMLLDVMMPRLDGIQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 66  TTLKIREARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +   +          D ++ +  GE   L   E RI+E LM N G+  +  +I+  
Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI K+R+K+  +      +     +GY ++
Sbjct: 186 VWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKME 231


>gi|30264900|ref|NP_847277.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530386|ref|YP_021735.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187716|ref|YP_030969.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481771|ref|YP_038879.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65322198|ref|ZP_00395157.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869737|ref|ZP_02214395.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634030|ref|ZP_02392353.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638007|ref|ZP_02396285.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685909|ref|ZP_02877132.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705536|ref|ZP_02896000.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651274|ref|ZP_02934105.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196033172|ref|ZP_03100585.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041444|ref|ZP_03108737.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043886|ref|ZP_03111123.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206977011|ref|ZP_03237912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962325|ref|YP_002340897.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218906060|ref|YP_002453894.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098310|ref|YP_002532367.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225866835|ref|YP_002752213.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817627|ref|YP_002817636.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917487|ref|ZP_04081036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929881|ref|ZP_04092896.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936145|ref|ZP_04098948.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948581|ref|ZP_04110860.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228988098|ref|ZP_04148197.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229093945|ref|ZP_04225036.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|229124398|ref|ZP_04253586.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229141576|ref|ZP_04270108.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|229158457|ref|ZP_04286518.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|229187098|ref|ZP_04314247.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|229199005|ref|ZP_04325691.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|229604112|ref|YP_002869105.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687640|ref|ZP_05151496.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725206|ref|ZP_05186989.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736944|ref|ZP_05194650.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741979|ref|ZP_05199666.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754423|ref|ZP_05206458.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757256|ref|ZP_05209283.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259575|gb|AAP28763.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505534|gb|AAT34210.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181643|gb|AAT57019.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333327|gb|AAT63973.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164714566|gb|EDR20085.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513824|gb|EDR89192.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530831|gb|EDR93533.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129661|gb|EDS98524.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670373|gb|EDT21113.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083100|gb|EDT68162.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195994601|gb|EDX58556.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025222|gb|EDX63892.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027692|gb|EDX66306.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206744816|gb|EDZ56222.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217063173|gb|ACJ77423.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218534774|gb|ACK87172.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242368|gb|ACM15078.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225788218|gb|ACO28435.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007195|gb|ACP16938.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228584471|gb|EEK42603.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228596407|gb|EEK54078.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228624976|gb|EEK81742.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228641856|gb|EEK98155.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228659050|gb|EEL14702.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228689427|gb|EEL43241.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228771596|gb|EEM20063.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811080|gb|EEM57422.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823490|gb|EEM69319.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829797|gb|EEM75419.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842159|gb|EEM87258.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268520|gb|ACQ50157.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|324328738|gb|ADY23998.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++G   L   +   +           L S    D+  ++      G   L
Sbjct: 6   ILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT-DLVILDIM--MPGISGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110
           +    IR  S VP++ ++        L    +G DD + KP  + E+             
Sbjct: 63  KTCEEIRKTSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRRYHI 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +   +  E+G  R+  D  +  V G    L   E  IL  +M    +  + 
Sbjct: 123 YRGKEDEASQPEEHFIESGRFRINEDFNEVYVDGTEVNLSDIEYHILLIMMQYPKRIFSA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++ +I+           V  HI  LRKK+         + +    GY  D
Sbjct: 183 QNLYESIWSEPYFYSCNATVMVHIRNLRKKVEKNPQNPVSITTVWGKGYRFD 234


>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 240

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         +  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 236


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        SS   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLML--PELDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R +R     P+I ++   S    +   D G DD + KP        R         +
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|218297199|ref|ZP_03497861.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218242476|gb|EED09015.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+ G        G  +    S E    L   A      ++  L   GE   +
Sbjct: 5   LVVEDEPAVRLGVRLALERAGHRVLEAESAEAAWPLLKEAE--AVVLDWML--PGEPGTK 60

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   +R       P++ ++    ++  ++    G DD         E L        R  
Sbjct: 61  LLERMRQGPYPSLPVLMLTARAEVRDRVEGLSRGADDY-LAKPFATEELLARLEALLRRA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ +  +  +  ++    PL RRE  +L +L    G+   + ++  A++G 
Sbjct: 120 GKRKVLRRGPLLLDLERMEATLEDRPLPLSRREFELLAFLAERPGRVYTREELLEAVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            D       V+ HI +LR+KL  +      +++ R +GY  
Sbjct: 179 PDYLGTPRTVDQHILQLREKLGEDPKAPRFLETVRGVGYRF 219


>gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++                 D+  ++  L   G    
Sbjct: 3   ILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E+ R +R     P++ ++    L   L   + G DD + KP    E++ R+  I  R   
Sbjct: 61  EVLRELRRERDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++ +  R     G+   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + ++R +GY +D
Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFPRKLIHTRRGMGYVLD 220


>gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +      +    L  +   D+  ++  L        
Sbjct: 3   ILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLML--PDIDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++   I+  +S++P++ +S    +   L     G DD + KP   RE++ R+ AI RR  
Sbjct: 61  QVIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K   N  E G I++  D R   +  +       E  IL  ++ N  K   + +
Sbjct: 121 KAKLLSNKKQVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G +D +     V+ HI ++RKKL +    D + +   +GY  + 
Sbjct: 181 LLDTIWG-YDFSGNTRAVDIHIKRIRKKLLDH--EDAIKTIYGVGYRFEV 227


>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   ++D                      +   +    D+  ++  L G  G  +
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLPGTSGLDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
               R  +   ++P+I ++        +   ++GVDD V KP   RE+    R      R
Sbjct: 65  ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +R+              P+   E R+L + M +  +   +TQ+   ++
Sbjct: 125 EDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFDLENMVQTVRGSGYRF 225


>gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
 gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++   +R+     P+I ++    ++  +  F+ G +D V KP        R        I
Sbjct: 61  QVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +   + NV++  + +LR K+        + + R +GY ++ 
Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLEE 226


>gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 244

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
             ++DD   ++            ++   +S E       + +E D+  ++  L   G+  
Sbjct: 7   IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIML--PGQDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
             + R +R  SQVP+I ++        +   + G DD + KP + RE             
Sbjct: 65  FAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRME 124

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +     V++         + +  R+   + E   L   +  +L   + + G  + + 
Sbjct: 125 HTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            I     G  D A  +  ++ H+S+LR++L  +      + + R  GY +
Sbjct: 185 LIAENTRGR-DSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYIL 233


>gi|70730512|ref|YP_260253.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344811|gb|AAY92417.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G  ++  N+      L      ++  ++  L   G+   
Sbjct: 3   ILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINL--PGKDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++   ++ +    ++ ++    L+  +   D G DD + KP    E+    R       +
Sbjct: 61  QVLEQLQGNYPARVMMLTARGRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSEV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     +   +++               L  +E  +L  LM + G+ + +TQI S ++ 
Sbjct: 121 IVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHVLMRHSGEVLTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRGKIDDASDVKLIHTLRGVGYVLE 221


>gi|317489022|ref|ZP_07947549.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316911889|gb|EFV33471.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 243

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G  +                  D+  ++  +        
Sbjct: 23  LLVVDDEPEIVALLDEYFTGLGYRVLTAEDGATALKRA-EQSPDLIVLDVGMPL--MDGY 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
            + R +R H   P++ ++ +      L+ F++G DD V KP     + ARV A      R
Sbjct: 80  AVCRRLREHLTCPILFLTAHVEDVDALEGFEAGADDYVLKPFSLAVLGARVKAHLARDNR 139

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V       G I +    R     G    L RRE  I+ +L  + G+   + +I   + 
Sbjct: 140 QHVRAEVRFDGDIAIDYRSRTVTAAGRPVELTRREFDIVAFLSKHPGQVFDRDRIHERV- 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           G ++   +  VV  HI ++RKKL       DPV++   +GY 
Sbjct: 199 GGWENESDSQVVTEHIRRIRKKLAAAGAEPDPVETVWGMGYR 240


>gi|315105932|gb|EFT77908.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 236

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDTALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+  N      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +  E   WL +    DV  ++  L         
Sbjct: 4   LVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIML--PRLNGYR 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA     P++ ++         +  D+G DD ++KP  +  ++AR+ A+ RR   
Sbjct: 62  VCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTGR 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +        +    R     G    L  RE  +LE L    G  V+K +I  +++  
Sbjct: 122 RLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + N+VE HIS LR+K+        V + R  GY +
Sbjct: 182 A-FDGDPNIVEVHISALRRKIDAPFARTSVGTVRGAGYRL 220


>gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [uncultured Desulfobacterium sp.]
          Length = 242

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +        DG +++   S E    L  S   D+  ++  L G  G  V
Sbjct: 17  ILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGGIDV 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            +  R +     +P+I ++   S +T +    +  DD V KP            + R   
Sbjct: 77  AKRLRSVHNTINIPIIMLTA-KSEETDIISGLTLADDYVTKPFSPKILSARISAILRRIN 135

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   + G I + +  R  EV GE   L   E +IL  L    G   +++QI 
Sbjct: 136 DSSDDASDDKIIKRGDIVIHTGRRRVEVCGEPVELSFSEFQILIMLSKRPGWVFSRSQIV 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D  V +  V+  I  LRKKL +      +++ R +GY  
Sbjct: 196 DTVHGE-DYPVTDRSVDVQIVGLRKKLGSCG--RYIETVRSVGYRF 238


>gi|229072342|ref|ZP_04205546.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710767|gb|EEL62738.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 226


>gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       + +      ++   D+S +   L+      +
Sbjct: 3   ILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTM-PDISLVILDLMMPEMNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +   L   E  IL  L ++  +  +   IF 
Sbjct: 122 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227


>gi|110801905|ref|YP_697561.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682406|gb|ABG85776.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       +      L    R D+  ++A L        
Sbjct: 3   ILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKERPDIIILDAML--PDISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++    +   L     G DD + KP +  E++ R+  + + +  
Sbjct: 61  NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +              D R   ++ E   L  +E  +L  L  N+ K  ++ ++ + +
Sbjct: 121 DSKKKVKDLTIGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V+  I +LRKKL      + + +    GY +D 
Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222


>gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator
           [Geobacter metallireducens GS-15]
 gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter metallireducens GS-15]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F ++G S +   + E    L  +   D+  ++  L   G    
Sbjct: 3   ILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIML--PGRDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
            +   +R   S+VP+I +S   ++Q  +   + G DD + KP    E +      + R  
Sbjct: 61  SVLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R     + +   G      G    L  +E  +L  L+  +G+ +++  I   ++G
Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + N+V+  I +LR+K+ +      + + R  GY +D
Sbjct: 181 I-NFDSDTNIVDVAIRRLRRKVDDPFERKLISTVRGAGYVLD 221


>gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 249

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD + + +         G  +         + L      D+  ++  L    G  V
Sbjct: 5   ILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFTV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 65  CQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + A    I  +       +  +         L   E  +L  L+   G+ VA ++I 
Sbjct: 125 RIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E   +             D+  ++  L   G   +E
Sbjct: 14  LIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVML--PGMDGIE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA + VP+I ++   +++  ++  D G DD + KP    E++AR+    RR  +S
Sbjct: 72  ICRRVRAVTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRDIS 131

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A        + +F    + +V GE   L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 132 TEDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G FD   E NVV+ +I  LR KL ++     + + R +GY 
Sbjct: 192 G-FDYTGETNVVDVYIRYLRAKLDDRFNKKYIYTVRGVGYV 231


>gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +     F + G  ++     E    L    + DV  ++  L  +    L
Sbjct: 15  LLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPAR--DGL 72

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R      P++ +S    +   +    +G DD + KP    E+       +    
Sbjct: 73  SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    +   + +          G+  PL  RE R+LEYL+ + G+ V +T +   ++
Sbjct: 133 SQGAETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +    + NV++ H+S+LR K+        + + R  GY 
Sbjct: 193 D-YHFDPQTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYM 232


>gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565]
 gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565]
          Length = 218

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++           G   +  +      +L  +   D   ++  L   G   L
Sbjct: 3   ILIVEDEKILAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGL--PGRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + +  R+     P++ ++    L   ++  ++G DD + KP    E++ARV A + R  
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +R+         +G    L   E R+L YLM +RGK V+++++   IY 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + N VE  I ++RKK       D +++ R LGY I+ 
Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----TNPDLIETVRGLGYRINE 218


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +               L  S + D   ++  L       +
Sbjct: 5   ILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVML--PQLNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  S VP++ I+    +   +   D+G DD V KP    E+    R      + 
Sbjct: 63  EVCRRIRKTSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + +     + +  D  +   +     L R+E  +L+ L+ NR     + +I   ++G
Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ +I  LR KL+ +     +++ R +GY +
Sbjct: 183 -FDTEVETNVVDVYIRHLRTKLQTEHTP-YIETVRGVGYVM 221


>gi|270264908|ref|ZP_06193172.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041206|gb|EFA14306.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I     +G  +  F   E      +     +  ++  L        EL
Sbjct: 7   LVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALVILDVGL--PDINGFEL 64

Query: 64  PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + + S   P++ ++        L   + G DD V KP   RE+ ARV  I RRL+  
Sbjct: 65  CRRLLSQSADLPILFLTARSDEVDRLIGLEIGADDYVAKPFSPREVSARVRTILRRLQKQ 124

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP  +   G       +  PL R E  +L+ L+   G+  ++ Q+  ++
Sbjct: 125 QRLQQPALYTFGPFDLDEPGAILYYHQQPLPLTRYEFLLLKTLLLAPGRVFSRQQLMDSV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           +   +E+++   V++HI  LR KLR    G  P+ + R +GY
Sbjct: 185 WAQAEESLD-RTVDTHIKTLRAKLRAIDPGEPPIHTHRGMGY 225


>gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 244

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        DG  +   +         +    D+  ++  L   G   LE
Sbjct: 6   LVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWML--PGLDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P++ ++   +    L   D G DD + KP   RE++AR+  + RR + S
Sbjct: 64  VCRRLRGAGELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRRSRPS 123

Query: 123 NNRAETGPIRV----------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
              A    +                   +      V          E RIL  + A+  +
Sbjct: 124 AGPATVAAVSPAAPESPAVLTVGGLTVNAAQHQVFVHDRPVNCTPGEFRILSAMAASPDR 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++Q+   +       V E  V+ HI  LRKK+  +      + +   +GY +
Sbjct: 184 VFTRSQLLDCLTD-HGRPVSERTVDVHILNLRKKIETSPRRPQHLLTVHGIGYKL 237


>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G         +      ++   D+  I   L+      +
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTN-PDIGLIILDLMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P++ +S   +    +    SG DD V KP +  E++ARV ++ RR + 
Sbjct: 62  QVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRSQG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + V     + +         +   L   E  IL  L ++  +  +   IF 
Sbjct: 122 EVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGYKVE 227


>gi|154509392|ref|ZP_02045034.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799026|gb|EDN81446.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC
           17982]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G   E +++           R  +  ++  L        
Sbjct: 4   ILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGL--PDIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR     +P+I ++   S+   +   + G DD V KP    E+LARV    R   
Sbjct: 62  EVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREET 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++       G + +    R   V  E   L  RE  +LE  M N G+ +++ Q+ SA++
Sbjct: 122 STSSAMTLTRGSLVLDLKTRRARVGAEWVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D     NVV+ ++S LR+K+    G D  ++ R +GY +
Sbjct: 182 GI-DFDGASNVVDVYLSYLRQKI----GKDYFETVRGMGYRL 218


>gi|221068535|ref|ZP_03544640.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713558|gb|EED68926.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G ++E     E  ++L      D + ++  L       L
Sbjct: 3   ILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGL--PVRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  RA  + +P++ ++   +    +   D+G DD + KP H  E+LAR+ A+ RRL 
Sbjct: 61  SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I + S      V+G+   L   E ++L  LM   G  V++T++   IY 
Sbjct: 121 PHASALWQCGAITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKLPAGS----IETVRGLGYRL 216


>gi|311899558|dbj|BAJ31966.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 245

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV-SAIEAFLIGKGEKVL 61
           +++DD A ++          G  +E            +    D    +   +   G    
Sbjct: 6   LVVDDDAAIRRSLERGLRLSGFRVEVAADGAQALSRLAGDAPDPPDVLVLDVGMPGLSGT 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ +S    L   +    +G DD + KP    E++ R+ A+ RR  
Sbjct: 66  DVCRTLRARADDTPVLMLSALDELADRVAGLQAGADDYLVKPFALEELVLRLHALLRRRP 125

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+  + R    + +   L RRE  +L  L  N G  +++  +   ++G
Sbjct: 126 PQPTDLIRVGPLRIHPETRQAFWEEDELRLTRREFELLAQLARNAGLVLSREVLLDRVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  + V++ +S LR+KL        V + R +G+ +
Sbjct: 186 -YDFEVRSDAVDTFVSYLRRKLEAGGRPRTVHTVRGVGFVL 225


>gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
 gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
          Length = 235

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 88/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D       + G  +    + +    + S     ++ ++          +
Sbjct: 5   ILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHEIHLAIVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV    RR + 
Sbjct: 63  TMTMKLRQKYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYEQ 122

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                                       ++     +   L  +E +ILE LM+  G+  +
Sbjct: 123 IIKLKNMTTNDNAQHKLVVGGLELDKYTKEVSANNKTVRLTAKEFQILELLMSYPGRVYS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +I+ A++   +EA+    +  HI KLR+K+  N    + +     +GY I+ 
Sbjct: 183 AEEIYQAVW--KEEAINTETIMVHIRKLREKIEINPKKPEYLKVVWGIGYKIEK 234


>gi|126651878|ref|ZP_01724079.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591346|gb|EAZ85454.1| two-component response regulator [Bacillus sp. B14905]
          Length = 256

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD + + D    +   +G   ++  ++ +      +    D+  ++  L       
Sbjct: 21  ILLVDDESAILDMLQMVLTKEGFRQIDRASTAQEALNACNKKPYDMILLDVML--PDRSG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REIL 109
            ++   IR  ++ P++ I+   S    L  F  G DD + KP +            R + 
Sbjct: 79  FDICPFIRETTEAPILFITAKNSDLEKLTGFAMGGDDYITKPFNPLEIVARMKAQLRRVK 138

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                    L  +    + G  +V     +  V G+V   P +  ++L +   +  +   
Sbjct: 139 LYEEERPLHLSSNMFIYDFGRFQVNERAGELMVDGQVISCPAQVYQLLLFFCKHPNQIFT 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           K+Q++ A++G      ++N V  HI ++R+++  +    + + + R LGY +
Sbjct: 199 KSQLYEAVWGDH-SFGDDNTVTVHIGRIRERIEKDPKDPELLLTIRGLGYKL 249


>gi|306826127|ref|ZP_07459462.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431603|gb|EFM34584.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 217

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++++G  A   ++G  +      +    L+      +  +   L+       
Sbjct: 3   ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEA--LEKFHEFPIHLMVLDLMLPKRSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I  +  +P+I +S     +T +  FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALLRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V        V+ E   +  +E  +L+ L+ ++ + +++ QI  +I   F
Sbjct: 121 VEDIWHYQDVTVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILESISNDF 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + +  GY I
Sbjct: 181 ADLPLDRVVDVYIRNLRKKLDL----DCIVTVKNAGYKI 215


>gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223]
 gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223]
          Length = 236

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L  +   D+  ++      G+   
Sbjct: 7   ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
            L + +R HS VP+I ++        +   + G DD + K    RE       IL R   
Sbjct: 65  TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +   +          V  L   +  +L   + +  K + +  I 
Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKILTRDDIA 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228


>gi|262045791|ref|ZP_06018755.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|260573750|gb|EEX30306.1| response regulator [Lactobacillus crispatus MV-3A-US]
          Length = 240

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA    VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+ 
Sbjct: 65  QVAKEVRAILPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A T                             V  L  +E  +L  +     +  
Sbjct: 125 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 232

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              S R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRSDRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 125

Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           N   +                 + + G +    GE   L   E R+L    +  G  +++
Sbjct: 126 NGGRDESAAAAGAGVLAFGELEIDTGGMEVRRAGEPVALTPTEMRLLLEFSSAPGTVLSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 DKLLERVW-EYGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 230


>gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       +        ++   D+S +   L+      +
Sbjct: 19  ILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTM-PDISLVILDLMMPEMNGM 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 78  DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +   L   E  IL  L ++  +  +   IF 
Sbjct: 138 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIFE 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 198 RVW-QQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 243


>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
 gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE +VV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETHVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L ++   D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVML--PDLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +RA +  VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFHPKLIQTVRGMGYVLE 222


>gi|299530817|ref|ZP_07044232.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298721333|gb|EFI62275.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G ++E     E  ++L      D + ++  L       L
Sbjct: 3   ILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGL--PVRDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  R     +P++ ++   +    +   D+G DD + KP H  E+LAR+ A+ RRL 
Sbjct: 61  SVLRAWRTQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I + S      V+G+   L   E ++L  LM   G  V++T++   IY 
Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKLPAGS----IETVRGLGYRL 216


>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++          +G  +   +  +           D+  ++  L       +
Sbjct: 5   ILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVML--PELSGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  +   P+I ++   +    +   D G +D + KP    E+LARV    R   
Sbjct: 63  EVLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGA 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +     E   +        V  + R+   + +   L  +E  +L YL+ N+   +++  I
Sbjct: 123 IIQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   E NVV+ +I  LRKK+  ++    + + R +GY I
Sbjct: 183 LLTVWG-YDYEGETNVVDVYIGHLRKKIEEEINSPLIRTVRGVGYVI 228


>gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E                 D+  ++  L       +
Sbjct: 6   ILIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVML--PSLNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R  S++P+I ++    +   +   D G DD + KP    E    +       R 
Sbjct: 64  EILRRLRQVSEIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRV 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++  + G +++           E   L ++E  +L+ LM N    + +  I   ++
Sbjct: 124 QHEKSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++ A + N+V+ ++  LR K+ ++     + + R +GY +
Sbjct: 184 G-YNYAGDTNIVDVYVRYLRIKIDDRYHQKFIHTVRGVGYQL 224


>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G+ +   ++       Q+    D+  ++  L   G    
Sbjct: 4   ILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDG-ARQAVEHYDLVILDVML--PGMNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DVLRQVRQSSEVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRRTDN 120

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N       +        GR          L   E  +L  L+++ G+ V++  + S + 
Sbjct: 121 RNQMDAPLRVGDLSLDPGGRQVRCHDTEIVLTSVEFSLLHMLLSHAGQVVSREDMVSQVL 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           G      +   ++ HIS +RKKL     G + + + R +GY 
Sbjct: 181 GRHLSPYD-RSIDVHISSVRKKLGQTPSGRERIKTIRGVGYQ 221


>gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42]
          Length = 226

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 181 DMS-FDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 222


>gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   + D        +G  +      E    L +  R D+  I+          
Sbjct: 3   LILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRVDLLIIDIM--MPVLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR +S VP+I +S        +   + G DD + KP +  E++ARV +  RR K
Sbjct: 61  IRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYK 120

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N +     +       +  + ++  + GE+  L   E  IL  L  N GK  +  +I
Sbjct: 121 KLGNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSIDEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 181 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 229


>gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD   KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 237

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        D   +      +    +      D+  ++  L        
Sbjct: 6   ILIVEDEKTISDIVKNYLIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLML--PKLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S+VP+I  S        ++    G DD V KP  ++E++ RV A+ RR++ 
Sbjct: 64  EVLKNIRNKSKVPVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N                               L + E  I+  L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTNDGRLLMDLKYNIFLKDGEEVSLTKNEFSIIRTLFSNPNKIFTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +GL D    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 184 LTFGL-DYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +                       +  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLML--PGLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R+IRA S VP+I ++     Q  +   ++G DD V KP   +E+    R        
Sbjct: 63  EICRLIRAESDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRRGTE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +   G      G    L   E  +L  L     K   + ++ + ++G
Sbjct: 123 AGAVEHVRVGDVDIDVLGHRVTRDGAALALTPLEFDLLLTLARTPSKAFTREELLARVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
               A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 -HQHAADTRLVNVHVQRLRSKVEKDPEHPTIVVTVRGVGYR 222


>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
 gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
 gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
 gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G +    +       +  S   D+  ++           
Sbjct: 4   ILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVM--MPYLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +      ++F     R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 GIPKNSLILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +    +     +G +++     +    L +S   D + ++  L       L 
Sbjct: 9   LVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIML--PELDGLS 66

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           L R +R   S +P++ +S   S++  +    +G DD + KP    E+ AR+         
Sbjct: 67  LVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRASR 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R   G + +    R   V G+   L  RE  +LEYL+ + G+ V K  I   ++ 
Sbjct: 127 SPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NVV+  +S+LR K+        +++ R +GY  
Sbjct: 187 -YSFDPQTNVVDVLMSRLRSKI--DPDKTRIETLRGVGYVF 224


>gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +   +           +  +A+  +  +    +      L 
Sbjct: 6   LIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGLT 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+   
Sbjct: 66  VLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWSN 125

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S+++       +V       EV G+   L +RE  +L Y + +RG  V++  I   ++G+
Sbjct: 126 SSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWGM 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 186 -DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225


>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Psychrobacter sp. 1501(2011)]
          Length = 240

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 88/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +    + +    +  +    +  I   L+      +
Sbjct: 5   ILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64

Query: 62  ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110
           ++ + IR       ++VP++ ++        +   + G DD + KP   RE+      + 
Sbjct: 65  QVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R      +    ++    G + VF D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G         E  +    +   D+  ++  L   G   L 
Sbjct: 2   LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWML--PGASGLT 59

Query: 63  LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117
           L R          VP+I ++        +   D+G DD +             R     R
Sbjct: 60  LARRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRR 119

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    E G +++ +         ++  L   E ++L YLM++  +  ++ Q+   +
Sbjct: 120 APEQAAVTLEAGRLKLDTATHRVSYDEQLLKLGPTEFKLLHYLMSHAERVHSRGQLLDKV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ HI +LR+ L        +++ R  GY +
Sbjct: 180 WGDH-VFIEERTVDVHIKRLREALGA--AAPMIETVRGAGYRL 219


>gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
          Length = 248

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 22  ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 80  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                + +     +  + GE+  L   E  IL  L+++ G  V+  +
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248


>gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 246

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD A + +         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++     +  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAIWFQKTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   +A   ++  +++                 DV  ++  L   G    E
Sbjct: 15  LVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVML--PGLSGWE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
             + +R     P++ ++   ++Q  +   + G DD + KP    E+LAR+ A I R    
Sbjct: 73  FLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAAGQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + + +  R    +GE  P+  RE  ++EYL  ++G+ V++T ++  ++   
Sbjct: 133 PQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFDED 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D  +  N+++ H+S LRKKL      + + ++R  GYSI+
Sbjct: 193 DSTL-SNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227


>gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
 gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     A     G+  +  +       L    R D+  ++  L    +   
Sbjct: 6   ILIVEDDADISMIEEAYLNTAGLETKIVSEGSQVVPLLEKERFDLILLDLML--PDKSGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    +P++ ++        L  F +G DD ++KP    E++ARV A  R+ + 
Sbjct: 64  EICKEIRDKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      + +    G +R+ ++G       +    P RE  +L++L  N     +K
Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            Q+F  I+G +D   +   V  HI+++R+K+ +       +++    GY ++ 
Sbjct: 184 EQLFEKIWG-YDYVGDSATVMVHINRIREKIEDDSRKPKILETVWGAGYRLNK 235


>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G      +              D+  ++  L       L
Sbjct: 5   ILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGL--PEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   + G DD + KP   RE++AR+ AI +R   
Sbjct: 63  EVCREIRKSSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKRSTP 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +        E G +++ ++    +  G    L   E R+L  L+A     +++TQ+   +
Sbjct: 123 TPAPPEAVLEQGSLQLNAERHLCQFGGTPVSLTGSEFRLLATLLARPDHVISRTQLVDTL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG ++  V +  ++SHI  +R KL      + + +   +G  +
Sbjct: 183 YG-YNIHVSDRTIDSHIRNIRAKLAQAGCAEGIVTVHGVGLRM 224


>gi|225570310|ref|ZP_03779335.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
 gi|225160842|gb|EEG73461.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G       +G  +E  +  +           ++  ++  L       L
Sbjct: 3   ILIIEDDGGLSRGITFTMEREGYKVECCSGYKQGLAKVQKTPPELILLDWNL--PDGDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           +L + IR  S VP++ I+        +   + G DD + KP      +  ++ ++  Y  
Sbjct: 61  DLCKKIREFSHVPILMITARDMEMDEVMCLECGADDYIAKPFSLAVLKARVSALSRRYVL 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S     +G I +               L   E R+L+Y + N+ + + K QI   ++
Sbjct: 121 KTGSKRLLVSGDISIDGAEMKAYKGDRALDLSLTEFRLLKYFLENKNQVLLKEQILEYVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +    VEEN +  +I +LR+KL  N    + + +   +GY  + 
Sbjct: 181 DMGGTFVEENTLTVNIGRLRRKLETNSSSTEYIKTIHGMGYLWEE 225


>gi|225018950|ref|ZP_03708142.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
 gi|224948294|gb|EEG29503.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
          Length = 222

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +  G       +G  +    ++            D+  ++  L        ++ R
Sbjct: 2   EDDKTIVMGLAYSLEQEGFEVYTAGNVSAALTALKQN-YDLILLDLTL--PDGTGYDVCR 58

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            ++     P+I ++        +   D G DD + KP   RE+++R+ ++ RR     ++
Sbjct: 59  AVKGRGDTPVIFLTACDDEGNVVMGLDMGADDYITKPFRIRELISRIKSVLRRCSKEVSK 118

Query: 126 AET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G IRV +         +  PL   E R+L  L+ N G+ +++ Q+   I+ +  +
Sbjct: 119 TVFLSGSIRVNTAQARVTRGEQEIPLTSVEYRLLLTLIHNAGQVLSRAQLLDGIWDVGGD 178

Query: 184 AVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            V +N +  +I +LR KL +       + + R +GY ++
Sbjct: 179 FVNDNTLTVYIKRLRDKLEDDPAHPSIIRTVRGIGYLVE 217


>gi|182438910|ref|YP_001826629.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779565|ref|ZP_08238830.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178467426|dbj|BAG21946.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659898|gb|EGE44744.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G +       +       +   D+  ++  L   G    
Sbjct: 4   ILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGL--PGRDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + R +R      P+I ++   S++ T+   + G DD + KP    E+    R+      
Sbjct: 62  TVLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRQRTAA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +G + +    R          L  RE  +LE  + + G+ +++ QI S ++
Sbjct: 122 RAPEVTMLRSGSLALDLRTRRARADDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+V+ ++  LR+KL    G + +++ R +GY +
Sbjct: 182 G-YDFDPGSNIVDVYVRALRRKL----GAERLETIRGMGYRL 218


>gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 5   ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                + +     +  + GE   L   E  IL  ++++ G  V+  +
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVILSSAGNVVSIEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231


>gi|291302298|ref|YP_003513576.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571518|gb|ADD44483.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +        DG ++E     E           D   ++  L    G +V
Sbjct: 3   LLIVEDEQRMANALARGLKADGFAVEVAADGEAGLEAARFGSYDAIILDIMLPKLSGYEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R    ++ VP++ +S         D  D G DD + KP  +  +LAR+ A+ RR  
Sbjct: 63  IRTLRR--ENNWVPVLVLSAKDGEYDQSDGLDLGADDYLTKPFSYVVLLARLRALLRRGT 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     T     +         +     L  RE  +LEYLM N  + V K  +   ++ 
Sbjct: 121 PARPSVLTVGDLTLDPARHTVHREDTEISLSTREFSLLEYLMRNAEQVVTKVTLLDHVWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N+VE +I  LRKK+    G   + + R  GY +
Sbjct: 181 ASE-DTHVNLVEVYIGYLRKKIDTPFGRSSLQTVRGAGYRL 220


>gi|225352770|ref|ZP_03743793.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156377|gb|EEG69946.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + +    +   +G              +  + + D+  ++  L   G   
Sbjct: 12  LIMIVDDDQALGEMLSIVLESEGFKTVTCLDGWRAVEMFPTLQPDLMLLDVML--PGLDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR +S  P+I ++        +   ++G DD V+KP    E++AR+ A  R  K
Sbjct: 70  VQVAQRIRQNSNTPIIMLTAKSDTTDVVKGLEAGADDYVSKPFEVVELMARIRARLRMPK 129

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V+            R + G + +          G    L   E  +L  L A+ G+ +++
Sbjct: 130 VNAPAGKDEGDLTERLQCGTLVMDRAEHTATKDGVDLQLTPTEFELLYVLAAHAGEALSR 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             +   ++G ++   +  +V  H+ +LR K+        +  + R +GY  
Sbjct: 190 ANLLKRVWG-YESGGDTRLVNVHVQRLRMKVETDPENPRIVQTVRGIGYKF 239


>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
 gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G +    +       +  S   D+  ++           
Sbjct: 4   ILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIM--MPYLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +      ++F     R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|56962941|ref|YP_174668.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909180|dbj|BAD63707.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A   ++G  +      E    L ++   D+      L+      +
Sbjct: 4   ILLVEDDPEISDLVKAHLENEGYRVLTAADGEEAARLFANGGVDLVL--LDLMLPKMNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            L + IR HS VP++ +S   S          G DD + KP          +  + R   
Sbjct: 62  TLLKQIRVHSSVPILILSAKGSDLDKALGLGFGADDYIAKPFSLIELTARVQAAIRRATD 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       + G IR+  D       G+   L  +E ++L   M N  +   K Q++
Sbjct: 122 YTVAEAKEERVLQRGGIRLDVDAFMAYKNGQAVKLTAKEFQLLHVFMENPKRVFTKEQLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+       EENV+  HI +LR+K+  N    + +++   +GY +
Sbjct: 182 QQIWNEP-YLGEENVINVHIRRLREKIETNPSKPEIIETVWGIGYKL 227


>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 222

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +      D+  ++  +   G   +
Sbjct: 3   ILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMI--PGISGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A S VP++ ++   +L+  +   D+G +D + KP    E+LAR+    RR  
Sbjct: 61  EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + V         +     L  +E  +LE+L  N+ K   +++I   ++ +
Sbjct: 121 PESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +I+ LRKKL      + + + R +GY I
Sbjct: 181 H-FDSDTSVIDVYINFLRKKLDIVGCGNIIQTIRGVGYII 219


>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 245

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G       +              +  ++          +
Sbjct: 18  ILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIM--MPELDGI 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S VP+I ++        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 76  RATAKLREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRYTA 135

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +        PI +    +   V GE   L   E  IL+ LM + G+  +  QI+ 
Sbjct: 136 LGGAEKAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQIYE 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++        EN V  HI  LR+K+  N      +     LGY +D 
Sbjct: 196 QVWNDPAY-GSENTVAVHIRHLREKIEINPAEPRYLKVVWGLGYKMDK 242


>gi|289628083|ref|ZP_06461037.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646706|ref|ZP_06478049.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867466|gb|EGH02175.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 267

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTEETFDVVVLDLML--PGEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 159 RSDQRTTVRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|257791925|ref|YP_003182531.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257475822|gb|ACV56142.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 234

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +            +E   + +    L       V  ++           +
Sbjct: 6   LIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLERKSPSVILVDLM--MPEMNGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             +  R+ S  P+I IS        +   D G D  + KP    E+LA + A+ RR    
Sbjct: 64  FIKEARSVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRRCNAL 123

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G I    +         V      E +I   L ++ G+   K 
Sbjct: 124 SASGPSNISPDGSVVRMGAIEFDKESLIVRKNSNVVSFTASELKIFSKLFSSPGRVYTKA 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q++  I        E+  +  HIS +R K+ +       + + R LGY  +
Sbjct: 184 QLYELISASSHGGGED-SIMVHISNIRSKIEDDPNNPAHIVTVRGLGYRFE 233


>gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
 gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
          Length = 224

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     A   D+  S++     +  E   ++ + D   ++       +  L
Sbjct: 3   ILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIM--MPKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + +R      P+I ++   S++  +   D+G +D + KP    E+LARV  +  +  
Sbjct: 61  SVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++         + V  D        E   L  +E  +L Y++ N G  +++ ++   ++ 
Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+ +      + + R +GY +
Sbjct: 180 NYDYMGSSNVIDVYIRYLRKKIDDGREKKLIHTVRGVGYVL 220


>gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +      +            +  ++  +       +
Sbjct: 6   ILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMI--PKINGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           ++ + IR HS VPLI IS   S          G DD + KP          +  + R   
Sbjct: 64  DVMQHIREHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  +    R   G + +          G    L  +E  IL+ LM +  K   K QI+
Sbjct: 124 YDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           + ++       +EN V  HIS+LR K+         + +   +GY +  N
Sbjct: 184 ALVW-KDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGEN 232


>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
 gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  ++  +  E           DV  ++  L    +   
Sbjct: 5   ILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIML--PKKDGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +RA +    ++ +S        +   D G DD + KP   RE+++++ AI RR  
Sbjct: 63  AVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKE 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + + N    G I++ +   +  V G+V     +E  +LE+L+ ++G+ +++  +  
Sbjct: 123 VLSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+   +  +V+ HI K+R+KL++      + + R +GY ++
Sbjct: 183 RLWG-FEYDGDTRIVDVHIFKIREKLKDYGIK--IKTIRGIGYMLE 225


>gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
 gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
          Length = 234

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G       S E       + + D   ++  L   G   L
Sbjct: 14  ILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLML--PGIGGL 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119
           E+ R +R      PL+ ++   S+   +   D G DD + KP    E+LAR+     R  
Sbjct: 72  EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+ +    R      +   L   E  ILE LM + G+ V++  +   ++G
Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV++ HI+ LR+K+        + + R  GY +
Sbjct: 192 Q-DWNGMTNVIDVHINHLRQKVDRGFDEPLIHTVRGRGYVL 231


>gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 225

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           ++G + +     E           D   ++  L        E
Sbjct: 4   LIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIML--PRRDGFE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +   IR   S   ++ ++    +   +   ++G DD + KP    E+LARV  I  R   
Sbjct: 62  ILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGHA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +   G      G+   L  +E R+L  L    G  +++T I   ++ +
Sbjct: 122 RQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+ H+ +LR KL +      + + R +GY ++
Sbjct: 182 -NFDSGTNVVDVHMYRLRAKLDDPFSRRLIHTVRGVGYVLE 221


>gi|302542452|ref|ZP_07294794.1| transcriptional regulatory protein PcoR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460070|gb|EFL23163.1| transcriptional regulatory protein PcoR [Streptomyces
           himastatinicus ATCC 53653]
          Length = 218

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +              D+  ++  L   G    
Sbjct: 3   LLIVEDERRLALSLAKGLRAEGFAVDVVHDGREGLHRAQEGTYDLIVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + V    R  E  G+   L  +E  +LE+L  N G   +K  I   ++ 
Sbjct: 121 SGASPVVRVGALAVDRGARRVERDGDEVSLTAKEFSVLEHLAMNGGDVCSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F    + N+VE ++S LR+KL    G   +++ R  GY +
Sbjct: 181 -FAYDGDPNIVEVYVSALRRKL----GPGFIETVRGAGYRL 216


>gi|269120503|ref|YP_003308680.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614381|gb|ACZ08749.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++     F  +   +    +      +      D+  ++           
Sbjct: 4   LLIVEDEKKIRELLKIYFLRENYKVSEAENGRIALEMMKEETFDIVLLDI--YMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S VP++ ++     ++ L  ++ G DD + KP     +LA++  I  R+ V
Sbjct: 62  DTCREIRKTSNVPVVILTALSDDESQLLAYEIGADDFIIKPFKKDILLAKIRRISERISV 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +  D     V         +E  IL YL+ N+G   ++  I   I+G +
Sbjct: 122 NQHSYKFGGLEIDKDSYRILVDSREVKFAPKEFEILLYLIENKGVIKSRDDILIHIWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D  V + VV++HI K+RKKL +    D V +   +GY  + 
Sbjct: 181 DSEVFDRVVDNHIKKIRKKLGDYS--DYVKTVVSIGYKFEV 219


>gi|168214081|ref|ZP_02639706.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170714439|gb|EDT26621.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       +      L    + D+  ++A L        
Sbjct: 3   ILVVDDEISILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAML--PDISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++    +   L     G DD + KP +  E++ R+  + + +  
Sbjct: 61  NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +              D R   ++ E   L  +E  +L  L  N+ K  ++ ++ + +
Sbjct: 121 DSKKKVKDLTVGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V+  I +LRKKL      + + +    GY +D 
Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222


>gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755]
 gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G S++ F   +      SSA  D   ++  L       L
Sbjct: 3   ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTL--PKMDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ +   RA+  VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 61  EVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   ++ +   L  RE  +LE  M N+ + + ++ I   +Y 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 234

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D         A   ++G +++   +        ++A  DV  ++  L       L
Sbjct: 13  ILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRML--PDLDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R A ++ P I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 71  SLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPG 130

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +          G+  PL  RE  +LE+L+  +G+   +T +  A++
Sbjct: 131 LQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     + NVVE+HIS+LR K+      + +++ R  GY I
Sbjct: 191 DIT-FDPQTNVVETHISRLRAKVDRPFDNELIETVRGAGYRI 231


>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 240

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 89/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + +    +  +    +  I   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64

Query: 62  ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110
           ++ + IR       ++VP++ ++        +   + G DD ++KP   RE+      + 
Sbjct: 65  QVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAVL 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R      +    ++    G + VF D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 237

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +           +      D   ++  L   G   L
Sbjct: 7   ILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R         P+I IS   S    +   + G DD + KP          + +  R  
Sbjct: 65  EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ R L++         + +    R+ ++  +   L  RE  +L +   + GK  ++  +
Sbjct: 125 AMSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  N      + +   +GY  
Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGYKF 231


>gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174]
 gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50]
 gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174]
 gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50]
          Length = 236

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP+++  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKQFLLLYKLAASPGRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI +LR++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRLRERFKDNPDFE-IVTMRGIGYK 232


>gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +    G  +    S              +  ++  L   G    
Sbjct: 7   ILIVEDDMDINNLLSKMLSKRGYHVRQAYSGTEALMCLEHYEFQLVLLDLML--PGMVGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E+   IR    +P+I IS   +  T ++  + G DD + KP    E+        R   +
Sbjct: 65  EIICQIRKLKNMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMV 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   +   N      + +  D  +  ++G    +  +E  ILE LM +  K   K  +F 
Sbjct: 125 FSNPRDKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++N V  HIS LR KL +     + + +   +G+ ++ 
Sbjct: 185 QVW-NDEFLGDDNTVNVHISNLRSKLAKADPATEYIHTVWGIGFKMNE 231


>gi|257069090|ref|YP_003155345.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256559908|gb|ACU85755.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 279

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 17/228 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D   +          +G  +             +  R DV  ++  L   G   LE+
Sbjct: 19  VIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVML--PGFDGLEV 76

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R I+A   VP++ ++        L     G DD + KP   RE++AR+ A+ RR++ + 
Sbjct: 77  CRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRAA 136

Query: 124 NRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   +              GR     G    L   E  +L  L    G  + + Q+
Sbjct: 137 PPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTREQL 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D       V+SH+  LR+KL    G D V +   +GY+++
Sbjct: 197 LADVWDWVDATG-TRTVDSHVKALRRKL----GSDLVRTVHGVGYALE 239


>gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
 gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
          Length = 240

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +                 + D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDIML--PVMDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 74  ATKRIVAERPVPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKILDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G D + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GADMIRTVHGVGYAFE 236


>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G +    +       +  S   D+  ++           
Sbjct: 4   ILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIM--MPYLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +      ++F     R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 226

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D   A     G +            L  S + D+  ++  L    +  L
Sbjct: 4   ILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGL--PRKDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
            + R IR   + +P+I ++    +  T+   + G +D + KP        R  +      
Sbjct: 62  TVLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRR 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S    + G + +    R   V   V  L  +E  + E L+ +  + ++K Q+ +
Sbjct: 122 IGAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D     N++E +I  LR+K     G   +++ R +GY ++
Sbjct: 182 RVWG-YDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRLN 222


>gi|167647248|ref|YP_001684911.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167349678|gb|ABZ72413.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 239

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D A ++D  + L   +G  + G    E  + L +  R D+  ++      GE  
Sbjct: 6   LIAVVEDDAEIRDLTLGLLRREGYEVVGCADAEAFDRLAARRRVDLVLLDIM--MPGEDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +RA  +V ++ ++        +   + G DD ++KP + RE+LARV AI RR +
Sbjct: 64  LSVCRRLRAAGEVAILMVTAKGDDIDRVIGLEIGADDYLSKPYNPRELLARVKAILRRTR 123

Query: 121 VSNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +      P  V                +  G    L   E  +L   + +  + +++ 
Sbjct: 124 EVHRAPSAPPGEVLGFAGWRLDTASRDLTDPDGRPVVLTGGEHDLLMAFLRHPQRVLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           Q+     G   E  +   V+  +S+LR+KL +   G   + + R  GY  
Sbjct: 184 QLLDWTRGRSAEPFD-RAVDVLLSRLRRKLGDASGGAALIKTVRGGGYLF 232


>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
 gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
 gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
 gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 268

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 260

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   ++D         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR  
Sbjct: 65  CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +      +         +  +         L   E  ++  L+   G+ V+   I
Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELIHCLLQRHGQTVSPALI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              ++G ++   +   +  HI  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|294813210|ref|ZP_06771853.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441678|ref|ZP_08216412.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325809|gb|EFG07452.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus
           ATCC 27064]
          Length = 232

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERHGFVVTAMPDGLLGLEAFRADRPDIALLDVMV--PGLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 124

Query: 123 NNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + + ++G +    G    L   E R+L       G  ++
Sbjct: 125 GAGDTAGSGQEAPGALLSFGDLEIDTEGMEVRKGGVPVALTPTEMRLLLEFSTAPGTVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 RDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 230


>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
 gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + +    R   V      L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDFIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A +++ + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231


>gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5
           str. 8401]
 gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
 gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
           glutamicum]
 gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|18309218|ref|NP_561152.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18143894|dbj|BAB79942.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       +      L    + D+  ++A L        
Sbjct: 3   ILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKEKPDIIILDAML--PDISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++    +   L     G DD + KP +  E++ R+  + + +  
Sbjct: 61  NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +              D R   ++ E   L  +E  +L  L  N+ K  ++ ++ + +
Sbjct: 121 DSKKKVKDLTIGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V+  I +LRKKL      + + +    GY +D 
Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        DG  +   +                  ++  L   G   +E
Sbjct: 6   LVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGL--PGLDGVE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R +R A    P++ ++        +   + G DD V KP   RE    +  V      
Sbjct: 64  VCRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRSGT 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V  D R          L   E  +L +LM   G+  ++ Q+ SA++
Sbjct: 124 GAPREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G    +     V+ H+++LR KL +     P+ + R +GY
Sbjct: 184 GYTASSG-ARTVDVHVAQLRAKLGDAS---PIRTVRGVGY 219


>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G  ++  +              DV  ++  L        +
Sbjct: 4   LMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIML--PSMNGYD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++         D  D G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGAP 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T     +    R     G    L  RE  +L +LM + G+ ++KT I  +++ L
Sbjct: 122 KRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +ENVVE ++  LR+K+    G   + + R  GY +
Sbjct: 182 -NYDGDENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRL 220


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A     G  +                  D+  ++      G    
Sbjct: 16  LLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVM--MPGLDGF 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114
           E+ R +R     VP++ ++   +++  +    +G DD V KP    E++ARV        
Sbjct: 74  EVVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSG 133

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        +   + +  D  +    G+   L   E ++L  L+ N  + ++K Q+ 
Sbjct: 134 HREQAAAEPAVLKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           SA++  +D A +  VVES++S LR+K+ +      + + R +GY +
Sbjct: 194 SAVW-NYDFAGDAGVVESYVSYLRRKV-DTGEPKLLHTVRGVGYVL 237


>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
 gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
 gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
 gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 241

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +         +   G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAQISFGEFSLDLATREMYHGDESIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 233

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G S+      +           D+  ++  L   G   L
Sbjct: 4   ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLML--PGLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++ R++RA S   P++ ++        +   + G DD V KP        R       + 
Sbjct: 62  QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N+R   G + +    R    + +   L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LGEPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            + G+ +    +  V+  ISKLR+K  +       + +    GY  
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226


>gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 263

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D     F + G  ++  +  E    L      DV  ++  L       L
Sbjct: 40  LLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRML--PRRDGL 97

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R    + P + +S    +   +    +G DD + KP    E+       A    
Sbjct: 98  ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++       + +          G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 218 D-YHFDPQTNVIDVHVSRLRSKIDKGFDPPLLHTVRGAGYII 258


>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 234

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 14  LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 71

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 72  VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 192 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 233


>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 246

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D A + +  I     +G  +         + L  +A+ DV  ++  L       LE
Sbjct: 9   LLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIML--PKLSGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           +  +IR  S VP++ ++        +     G DD + KP   +E            ++ 
Sbjct: 67  VCELIRRESVVPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRRQLD 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +R     I +    R+   + +   L  RE  +L  LM + GK +++ +I
Sbjct: 127 RGDALPSGDRDRIAITSIVIDRVAREVWRKKKKLELSWREFELLWLLMEHVGKALSRHEI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G  D   +   ++ +I  LR+K+  N    + + + R  GY  
Sbjct: 187 LDRIWGE-DWVGDPKTLDVYIRWLREKIEKNPSAPEYIQTVRGYGYRF 233


>gi|229020091|ref|ZP_04176872.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026320|ref|ZP_04182679.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|229032496|ref|ZP_04188464.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728865|gb|EEL79873.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228735036|gb|EEL85672.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228741201|gb|EEL91418.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|229175552|ref|ZP_04303062.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228607948|gb|EEK65260.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 231

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGTEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|76787576|ref|YP_328862.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|47087863|gb|AAT10379.1| DNA binding response regulator [Streptococcus agalactiae]
 gi|76562633|gb|ABA45217.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|229893727|gb|ACQ90232.1| DNA-binding protein [Streptococcus agalactiae]
          Length = 217

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++++G  A   ++G  +      +    L+      +  +   L+       
Sbjct: 3   ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEA--LEKFHEFPIHLMVLDLMLPKRSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I  +  +P+I +S     +T +  FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALLRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V        V+ E   +  +E  +L+ L+ ++ + +++ QI  +I   F
Sbjct: 121 VEDIWHYQDVAVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILESISNDF 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + +  GY I
Sbjct: 181 ADLPLDRVVDVYIRNLRKKLDL----DCIVTVKNAGYKI 215


>gi|325686293|gb|EGD28332.1| phosphate regulon response regulator [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 225

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF+  +       ++R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   R   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220


>gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           NEM316]
 gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A     ++ ++   S+   +   D G DD + KP    E+LARV AI+RR ++
Sbjct: 63  EITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E G    F         R      E   L +RE  +L  LM N  + + + ++  
Sbjct: 123 ETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREELLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D A E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 HVW-KYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVI 226


>gi|331085248|ref|ZP_08334334.1| hypothetical protein HMPREF0987_00637 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408031|gb|EGG87521.1| hypothetical protein HMPREF0987_00637 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G         +            +  ++  L        
Sbjct: 4   ILIVEDDETIARLLREHLEKWGYQARCAEDFKQVAKEFKEYAPHLVLMDIGL--PFYNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
                IR  S VP++ +S        +     G DD V KP     +  ++         
Sbjct: 62  YWCTEIRKTSNVPILFLSSMSDNMNIVMAIQMGGDDFVTKPFDLNVLTVKIQALLRRTYA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S +  E   + +         Q     L + + +IL+ LM   G  V + +I   ++
Sbjct: 122 FQGSASVMEHKGLMLNLSDASVTFQNRKIELTKNDYKILQILMERAGTIVKREEIMQRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE +++N +  ++++LRKKL      + + +K+ +GY I+
Sbjct: 182 -ESDEFIDDNTLTVNMTRLRKKLEELGVQEFIKTKKGIGYIIE 223


>gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     A   D+  S++     +  E   ++ + D   ++       +  L
Sbjct: 3   ILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIM--MPKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + +R      P+I ++   S++  +   D+G +D + KP    E+LARV  +  +  
Sbjct: 61  SVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++         + V  D        E   L  +E  +L Y++ N G  +++ ++   ++ 
Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+ +      + + R +GY +
Sbjct: 180 NYDYMGSSNVIDVYIRYLRKKIDDGREKKLIHTVRGVGYVL 220


>gi|315170598|gb|EFU14615.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVML--PTMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R +  
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVVVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+     D P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G     F   E      ++ +  +  ++  L   G    
Sbjct: 4   IMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVML--PGLDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++    +   L   +SG DD + KP    E++AR+ AI RR   
Sbjct: 62  EVLREVRNRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRRPSH 121

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +            R+    R   + GE   L  ++  +L +L  +  +   + Q+   ++
Sbjct: 122 ALITDHQKQYGSLRIDFKSRSVSLNGETLSLTPKDLALLLFLAEHPNQIFHREQLIERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           G+ D    +  V+  I +LR+ L         + + R  GY    N
Sbjct: 182 GI-DYDGSDRAVDHAIKRLRQSLHPMPPEDGGIRTLRGTGYQFYAN 226


>gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 250

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  ++             +   D+  ++  L       + 
Sbjct: 22  LVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVML--PELDGIG 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP++ +S        +   ++G DD V KP+    ++AR+ A+ RR    
Sbjct: 80  LCRRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139

Query: 123 N---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                           +    G + V + G +    GE   L   E R+L    A  G  
Sbjct: 140 PDPEGPAAAGSSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++   ++  +    +  VV+  + +LRKK+    G   +++ R  GY +
Sbjct: 200 LDRRRLLREVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 247


>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
 gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ ++          ++
Sbjct: 7   LIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVM--MPRMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR +  
Sbjct: 65  MTIKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRKF 124

Query: 123 NNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +                 +  D  +  V GE   +   E +IL  LM N G+  +  +
Sbjct: 125 AEKLNQREASSSVYTIGGLEINEDTVEVTVDGESVKMTPMEYKILLLLMKNPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + +  H+  +R+K+  N      +     +GY I+ 
Sbjct: 185 IYERVWN--ERAVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 233


>gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L++   +  F   G ++   +       L      D+  ++      G    E
Sbjct: 4   LLVEDEKLIRLFIVEYFSKQGAAVVEASDGYEALSLLDET-YDIVLLDIM--MPGIDGYE 60

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S +P++ IS     +  L  ++ G DD ++KP     + A+  A+ +RL   
Sbjct: 61  VCKLIRQKSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLNKG 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N   + G I +  D  +  V      L  +E  IL Y + N+ K +++ Q+   ++G +D
Sbjct: 121 NESLDVGMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG-YD 179

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++ +V++++ KLRKKL        + +   +GY  D
Sbjct: 180 YYGDQRIVDTYVKKLRKKLLEASS--YIQTVVKIGYMFD 216


>gi|315150222|gb|EFT94238.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKNGLEAALNEPFDLIILDVML--PTMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R +  
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+     D P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|317056279|ref|YP_004104746.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448548|gb|ADU22112.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 236

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G                S     +  I+          L
Sbjct: 8   ILVVDDDRDIVAAIAKLLELEGYKTVRAYDGIEALEKLSENDIQLILIDVM--MPRLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD + KP +  E+ ARV +  RR   
Sbjct: 66  SAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVKSSLRRYMQ 125

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +        V            +   V GE   L   E +ILE LM N G   +  +I
Sbjct: 126 LGDIGSINKTDVIKIGGLELDKGAKSITVDGEPVKLTATELKILELLMENAGHVFSAEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++     AVE N V  HI  +R+K+  +      +     +GY I+ N
Sbjct: 186 YRRVWNEDAYAVE-NTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235


>gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 226

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +        GD G +++     E   +L  +   DV  ++  L       + 
Sbjct: 4   LLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGL--PKIDGVS 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  VLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++     G +R+        V GE   L   E R+L Y+M ++G+ +++T++   +Y  
Sbjct: 122 IASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  I +LRKK+    G D +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFIGRLRKKV----GSDRIETVRGLGYRL 216


>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 277

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 44  ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 101

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R         P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 102 EICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 161

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             V    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 162 ALARDSRVDAGTLDVAGLSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDL 221

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 222 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 268


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        +S   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLML--PELDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R +R     P+I ++   S    +   D G DD + KP        R         +
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        +S   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLML--PELDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R +R     P+I ++   S    +   D G DD + KP        R         +
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 235

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G+     ++ E    L  +    +  ++          + 
Sbjct: 7   LVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVM--MPKMDGIV 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
              +IR  S VP+I ++        +     G DD + KP +  E++ARV +  RR  + 
Sbjct: 65  TTSLIREFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLML 124

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +  E   +R+    +   V      L   E +IL  LM N+G+  +  
Sbjct: 125 GAKSSNQQTTDEDTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSIN 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+  ++       E N V  HI K+R+K+  N      +     +GY I+
Sbjct: 185 DIYERVWDEPGYNAE-NTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234


>gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 224

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +    A+    G +     +      L      D+  ++           
Sbjct: 4   ILVVEDDVNTQRLICAVLQRGGYNSHVAGNGIEALNLMEERHFDLVVLDLM--MPEMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L   +R A   +P++ ++    ++   + F  G DD + KP   +E+L R+ A + R  
Sbjct: 62  QLCEDLRSAGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R   G   +  +        +   LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 IANERRLVVGETVLDYNALTVIRGNQQISLPQKEFYLLFKLLSYPNKIFTRLQLLEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   +++ +  HI++LR K R+   F+ + + R LGY 
Sbjct: 182 -PDTETDDHTLNVHINRLRDKFRDSPDFE-IVTVRGLGYK 219


>gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 233

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV       R+
Sbjct: 65  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  + +A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLD--LKLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|297192903|ref|ZP_06910301.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151548|gb|EDY66528.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 234

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFAVTAVPDGLLGLEAFRADRPDIALLDVMV--PGLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------------HHRE 107
           L R IR  S VP+I +S        +   ++G DD V KP                    
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A         +        G + V +DG +    GE   L   E R+L    +  G  
Sbjct: 125 GGAAGDGGPAGRQEQGGALTFGDLEVDTDGMEVRRAGEPVSLTPTEMRLLLEFSSAPGTV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 LSRDKLLDRVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232


>gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 235

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            ++++D   +      +   +G  +             +      +  ++  +       
Sbjct: 9   ILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMV--PFVDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------A 113
            E+ R +R  S VP++ IS   +    +     G DD + KP    E + R+        
Sbjct: 67  FEIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYI 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++  +      + V  +        ++  +   E  IL+  + N  K   K+QI
Sbjct: 127 YFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +I+G  D    +N V  HI +LR K+  +    + + +   +GY +
Sbjct: 187 YDSIWGQ-DALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 234

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   +       +  S   D   ++            
Sbjct: 11  LVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVM--MPRMDGFT 68

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   ++   +     G DD V KP    E++ R+  I RR+  
Sbjct: 69  LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +            +  +    GE   L   E ++L YLM N    ++K +I   +
Sbjct: 129 PEVDDDQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +K     + + R +GY +
Sbjct: 189 W-NYDFGGDGNVVESYVSYLRRKV-DKDEPHLIQTVRGVGYVL 229


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    +           R D+  ++  L        
Sbjct: 9   LLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVML--PDMDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R      P++ ++   + +  +    +G DD V KP    E++AR+ A+ RR  
Sbjct: 67  DVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTG 126

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    R     I +  +  +   +G    L   E ++L Y MAN G+ ++K QI  
Sbjct: 127 AGDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   +  +VES++S LR+K+ +      + + R +GY +
Sbjct: 187 HVWD-YDFRGDVGIVESYVSVLRRKI-DNADPRLIHTLRGVGYVL 229


>gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 241

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 13  LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV       R+
Sbjct: 73  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  +  A++
Sbjct: 133 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
              D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 193 -ETDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237


>gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVML--PDVDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++
Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222


>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD A ++         +G  +           +  +   D+  ++           
Sbjct: 4   ILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMVKNDDFDIIVMDIM--MPRLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + I+   ++P+I +S        L  F+ G+DD + KP   +E++ARV       + 
Sbjct: 62  SACKEIQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNRAKA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  +   + +    R+ ++ GE   +  +E  +L YL+ N    +++ ++   ++
Sbjct: 122 SGNTEDIIKYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   ++  +++HI  LR  L      + + + R +GY  + 
Sbjct: 182 G-FDFYGDDRTIDTHIKMLRNSLGPY--RNLIVTLRGMGYKFEK 222


>gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 223

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +   S+   D+  ++  L        
Sbjct: 3   ILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGL--PKLHGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA    VP++ ++   S++  +   D G DD + KP   +E+ ARV A   R L
Sbjct: 61  DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
             +++  + GP+   + GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E +I +LRKK+    G   + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLEK 220


>gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 234

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 10  ILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGL--PDMDGQ 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R  R  S VP++ +S   S    ++  D G +D V KP   +E LARV A+ R+   
Sbjct: 68  QVLREFREWSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALLRQAPA 127

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 128 GEAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHAGRVITQQQLLKDIW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 188 GPTHTE-DSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229


>gi|283768370|ref|ZP_06341282.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
 gi|283104762|gb|EFC06134.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
          Length = 218

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++DG      + G  +          +        +  ++  +       L
Sbjct: 3   ILVVEDDQIIRDGICEYLSEFGYRMIEAKDGREALFHFEHQDIQLVILDIQI--PFMNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F S  D  + KP     + ARV ++ ++   
Sbjct: 61  EVLKKIREKSALPILMLTAFSDEEYKIDAFTSLADGYIEKPFSLPVLKARVDSLIKKHFG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V       +++ +   +  +E  IL+YL+ N G  + +TQI   ++   
Sbjct: 121 QIEKFEYKNVEVNFTSYTAKLKNKDVDINAKELEILKYLLDNEGHALTRTQIIDNVWKDT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 EEIPYDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216


>gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
 gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
          Length = 242

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++DG   L   +G  +    +      +    R +V  +   ++  G   L
Sbjct: 6   ILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVF---RPEVDLVILDIMMPGMSGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S VP++ ++        L    +G DD + KP    E+ ARV A+ RR  V
Sbjct: 63  RVCEELRKLSTVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRRYCV 122

Query: 122 SNNRAETGPIRVFSDGRDP-----------EVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              + +                         V GE   L   E +IL  LM +  +    
Sbjct: 123 YQGKGQAPARAENLTLCSHGVKLALDCNRVWVDGEEIDLTETEYKILRLLMQSPQRIFPV 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+  ++           V  HI  LR K+  +      + +    GY  
Sbjct: 183 QVIYEDVWQEPYFYTSNGTVMVHIRNLRMKIEKDPQNPARLQTMWGKGYRF 233


>gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  ++                 DV  ++  L   G+   E
Sbjct: 5   LIIEDDNNIAALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLML--PGKDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR   ++P+I +S        +     G DD + KP    E++AR+ +   R +  
Sbjct: 63  IVKAIRDKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMRYERL 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + + +D     V G+   L  +E  +L +L +N      K QIFS+
Sbjct: 123 SGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQIFSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+G  D   +   V  HI KLRKK+  +    + +++    GY  +
Sbjct: 183 IWGE-DYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGYRFN 227


>gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++R    
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN   + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|52140668|ref|YP_086162.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974137|gb|AAU15687.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 231

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNTVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
 gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
          Length = 230

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +++          +G +L+  +S++           D+  ++  L        
Sbjct: 4   ILLVEDDSILAYSIEYTLNGEGFNLKCADSIKKARDNFKENSFDLIILDVML--PDGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           +  + IR  S+VP+I ++        +   D G DD + KP   +E+++R+       + 
Sbjct: 62  DFCKEIRKASEVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKT 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +   +G I+V +     E   +   L   E R+L   + +  + +++  I   ++
Sbjct: 122 FSKDLDLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
               E V++N +  +I +LR+K+ +       + + R LGY  ++
Sbjct: 182 DAEGEFVDDNTLSVYIRRLREKIEDNAGEPKYITTHRGLGYRWNY 226


>gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 231

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G ++   ++ +         +  +  ++          L
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVM--MPELDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +   + G DD V KP +  E++ARV + +RR   
Sbjct: 64  SATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRRYTQ 123

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    +         ++ ++  V GE+  L   E  I+ +LM N GK  +  QI+ 
Sbjct: 124 LGGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++     +  EN V  HI ++R+K+  N      +     +GY ++ 
Sbjct: 184 NVWKEPAYS-SENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   ++        +    +V  ++  L        
Sbjct: 4   ILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGL--PDMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+   +R  +++P+I +S        +D  D+G DD V KP         + A V     
Sbjct: 62  EVLAGLRGWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                          V    +      +   L   E  +LE L+ N+GK V++ +I S +
Sbjct: 122 NQPGGEPVVAADSFVVDLVAKKVTKDDKEVHLTPTEWGVLELLVRNQGKLVSQKEILSEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E + +  ++++LR+KL  +      + ++  +GY  +
Sbjct: 182 WGPS-YKTETHYLRVYLAQLRRKLEADPANPRHLLTEAGMGYRFE 225


>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  ++  +  E           DV  ++  L    +   
Sbjct: 5   ILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIML--PKKDGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +RA +    ++ +S        +   D G DD + KP   RE+++++ AI RR  
Sbjct: 63  AVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKE 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + + N      I++ +   +  V G+V     +E  +LE+L+ ++G+ +++  +  
Sbjct: 123 VLSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+   +  +V+ HI K+R+KL++      + + R +GY ++
Sbjct: 183 RLWG-FEYDGDTRIVDVHIFKIREKLKDYGIK--IKTIRGIGYMLE 225


>gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
 gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G S++ F   +      SSA  D   ++  L       L
Sbjct: 3   ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTL--PKMDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ +   RA+  VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 61  EVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   ++ +   L  RE  +LE  M N+ + + ++ I   +Y 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    +P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
          Length = 228

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D+  +   ++  G   +
Sbjct: 3   IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATT-PDIGLMILDIMMPGITGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P+I +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + +     + +          V  L   E  IL  L ++  +  +  +IF 
Sbjct: 122 KVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|223042407|ref|ZP_03612456.1| DNA-binding response regulator [Staphylococcus capitis SK14]
 gi|222444070|gb|EEE50166.1| DNA-binding response regulator [Staphylococcus capitis SK14]
          Length = 225

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D   +   ++      F S E            ++ ++      G    E
Sbjct: 6   LVVDDDRKILDYVKSHLINEHFETHAFLSGEEALHFLEKENVAIAIVDIM--MNGINGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR +++
Sbjct: 64  LCKTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQIN 123

Query: 123 NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                       +          +   LP +E ++L  L++N      +  I   I+G F
Sbjct: 124 AESELKLGNLTLNQPYMEINVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWG-F 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++  V+ HI +LR+KL        + + R  GY ++
Sbjct: 183 DYEGDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYKVN 222


>gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT]
 gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT]
          Length = 227

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +      +    L  +   D+  ++  L        
Sbjct: 3   ILLVDDEESLLNLVKINLMFENYEVITAECGKTAIELFQTQSPDLVVLDLML--PDIDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++   I+  +   P+I +S    +   L     G DD + KP   RE++ R+ AI RR  
Sbjct: 61  QVIHAIQEINNEVPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K  ++  E G I++  D R   +  +       E  +L  ++ N  K   + +
Sbjct: 121 KAKLLSNKKQSSIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G +D +     V+ HI ++RKKL      D + +   +GY  + 
Sbjct: 181 LLDKIWG-YDFSGNTRAVDIHIKRIRKKLLEH--EDAIKTIYGVGYRFEV 227


>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
 gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 241

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   S +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I             G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QEIPGAPAQQEEEVGFGEFHLNLATREMYRGDESIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
          Length = 227

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 233

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + R IR  +QVP+I ++    +   +     G DD + KP    E++ARV       R+
Sbjct: 65  SVLRKIRQSNQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  +  A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 227

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 4   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 182 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223


>gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48]
 gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48]
          Length = 226

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + + D  +     DG S E  +        Q     D+  ++  L        
Sbjct: 4   ILIVEDESAIADTLVYALQADGHSTEWVSLGSAAVEQQRLRPADLVILDIGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S+VP++ +S   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFSEVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                         +       +G+   L R E R+L+ L+    +  ++ Q+   + G+
Sbjct: 122 RPEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGY 219


>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 238

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 18  LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 75

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 76  VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 196 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 237


>gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 227

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 81/223 (36%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD  +  D   A    +G +            L    R D+  ++           
Sbjct: 3   ILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIM--MPQVDGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R +R A +QVP++ +S        +     G DD + KP    E    +        
Sbjct: 61  EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + V+      E  G    L  RE  ILE L    G+ V +  + +  
Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G+ D   E   ++ HI+KLRK++  +      +++ R +GY 
Sbjct: 181 WGM-DYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYR 222


>gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            + +DD   +          +  + ++  +S +           D+  ++  L       
Sbjct: 6   ILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIML--PDLSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
            EL   IR H+  P+I IS   +    L     G DD + KP +        + + R   
Sbjct: 64  FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           I       N   + G +    +     V+G+      +E  +L +   +        Q++
Sbjct: 124 IMENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D   EE  V  HISKLRKK+ +       + + R +GY  
Sbjct: 184 ELVWGN-DVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKF 229


>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
 gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++           G +++     E    L      D+  ++  L       +
Sbjct: 3   LLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNL--PKMDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+   IR  S+   ++ +S   ++   +   D G +D + KP   +E+ AR+   + R  
Sbjct: 61  EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I + S  +   V GE+ P+ ++E  ILEYLM  + K V+  ++   ++ 
Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +  +  N ++ HI  LRKK+ +     + + + R  GY I
Sbjct: 181 -SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMI 221


>gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
 gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G      ++             DV  ++  L       LE
Sbjct: 16  LIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S   ++ ++   S +  +     G DD + KP   RE++ RV A+ RR +++
Sbjct: 74  VCRQVRAFSDCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRIT 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                T          +        V G    +   E  +L  L    G+  ++ ++ + 
Sbjct: 134 VTGPGTDAPLIIGDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL  +  G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237


>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     +G      +  +  E        D   ++  L   G+  L 
Sbjct: 8   LVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLML--PGKDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R  S VP+I ++        L     G DD V KP   RE++ARV A+ RR    
Sbjct: 66  ICKDVRKFSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRAALG 125

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K + N      IR+ ++  +  + G +  L   E R+L+ L+   G   ++  +  
Sbjct: 126 APAEKTAPNILTFKHIRIDTERFECTINGSIIELTPVEFRLLKTLLGKPGTVFSREILMQ 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             Y      V    ++SH+  LR K+       P+  S   +GY +
Sbjct: 186 RCY-EDARIVSNRTIDSHMKNLRNKISLVDDPQPILQSVYGVGYKL 230


>gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 74/229 (32%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +              +   D+  ++      GE  +
Sbjct: 7   ILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAGAFDLLVLDIM--MPGEDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L R IR  +  P+I ++        +   + G DD V KP + RE           A+ 
Sbjct: 65  SLCRDIRDSNSAPIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIRRAQS 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               R             +         +    V PL   E  +L   +      + + Q
Sbjct: 125 MPPSRDTPPGERIRFGQFLFDADRRELIDGNQMVTPLSYGEHLLLAAFLHRPNVVLTRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +     G      +   +++ +S+LR+K+  +      + +    GY  
Sbjct: 185 LLDITRGRAANLFD-RSIDNQVSRLRRKIEEDPKDPKIIQTIWGGGYKF 232


>gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
 gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   +++       + G  +E F                +  ++  L G  G  +
Sbjct: 4   IYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKNIPSLILLDIMLPGEDGLDI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  +A + VP+I ++   S    +   D G DD + KP    E+++RV A      
Sbjct: 64  LTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRRTS 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++     I +  D     V G++  L  +E  +L+YLM N+G  +++ +I   ++
Sbjct: 124 RINEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G F+   E   V+ HI  LR+KL    G   + + R +GY I+
Sbjct: 184 G-FEYEGESRTVDMHIKTLRQKLGAAGG--CIKTVRNVGYMIE 223


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 54  ILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLML--PGVDGL 111

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 112 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 171

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 172 ALARDSRIDAGTLDVAGLSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDL 231

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 232 LNAVWG-YQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKL 278


>gi|297162476|gb|ADI12188.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 258

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 87/238 (36%), Gaps = 26/238 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++++    L    G ++           L    R D+  ++  L       +
Sbjct: 26  LLLVEDDEVIRNTVRMLLERYGFTVSTAGDGLTGLELFRERRPDLLLLDVML--PELDGI 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            L R +R  S  P++ +S        +   ++G DD V KP     ++AR+         
Sbjct: 84  GLCRRVRELSLAPILMMSARGDALDVVSGLEAGADDYVVKPCESAVLVARIRSLLRRASF 143

Query: 114 -----------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                            +        G + +   G +    G +  L   E R+L    A
Sbjct: 144 APVQRGAPGGAECETAEEDEPATLAFGDLTIDPRGMEVRRAGRLLALTPTELRMLLEFAA 203

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G  + +  + S ++       +  VV+ H+ +LR K+    G + +++ R  GY +
Sbjct: 204 SPGVVLERRTLLSRVWD-HAWHGDTRVVDLHVQRLRAKI----GAERIETVRGFGYKL 256


>gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 222

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ D         G  ++     E       S   ++  ++  L       L 
Sbjct: 1   MLVEDDELLGDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGL--PKLSGLA 58

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L + IR      P+I ++   S++  +   DSG DD + KP    E+ AR+ A + R   
Sbjct: 59  LLQNIRHDGNSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRRSQG 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  +   I +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG 
Sbjct: 119 RADSVLQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++E V+ N +E HI  LRKKL      + + + R +GY  + N
Sbjct: 178 WEEDVDSNALEVHIHNLRKKL----NANFIRTIRGVGYMAEKN 216


>gi|291302704|ref|YP_003513982.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571924|gb|ADD44889.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 242

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G              L    R D   ++  L       L 
Sbjct: 20  LVVDDEAPLAELLSMAVRYEGWQAYTAGDGTAALKLAREHRPDAVILDIML--PDMDGLS 77

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   + A   + P++ ++   +++  +    +G DD V KP    E+LAR+  + RR   
Sbjct: 78  VLDRLHADAPETPVLFLTAKDAVEDRVRGLTAGGDDYVTKPFSLEEVLARLRNLLRRSGA 137

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +           D  +    GE  PL   E  +L YLM N  + ++K QI   +
Sbjct: 138 ARANRASALTVGDLTLNEDTHEVSRAGEDIPLTATEFELLRYLMRNPRRVLSKAQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY +
Sbjct: 198 W-NYDFGGQANVVELYISYLRRKI-DAGRPPMIHTRRGAGYIL 238


>gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23]
 gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23]
 gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV       R+
Sbjct: 65  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  + +A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   N       +    R D   ++      G    E
Sbjct: 12  LVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVM--MPGMDGFE 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 129

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 T           +  +    GE+  L   E  +L YLM N    ++K +I   +
Sbjct: 130 VEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDNV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 W-HYDFGGDGNVVESYISYLRRKV-DTQDPQLIQTVRGVGYVL 230


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVML--PDMDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
            + R +R      P++ ++    +   +     G DD V KP         I A +   +
Sbjct: 75  TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +  D  +         L   E ++L YLM N G+ V+K QI   
Sbjct: 135 AIENQDDGVVRVADLVLDEDAHEVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+    G D       + ++R +GY +
Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|325568587|ref|ZP_08144880.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325157625|gb|EGC69781.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 261

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +     +    +G         +    L  Q +   D+  ++  L      
Sbjct: 31  ILLVEDEESLASFIQSELTFEGYGTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 88

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 89  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 148

Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    + +            +       +V GE   L  +E  IL  LM        +  
Sbjct: 149 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 208

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 209 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 255


>gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 4   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + + G+ + ++ I S ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 182 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223


>gi|222151313|ref|YP_002560469.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120438|dbj|BAH17773.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +  ++      E       S   D   ++  L       L
Sbjct: 4   ILVVEDEANLARFIELELTHESYAVTVMYDGESGLQEALSTEYDCILLDIML--PKLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   + P+I I+        +   D G DD + KP    E+LAR+ A+ RR K 
Sbjct: 62  EVCRKLRREKETPVIMITAKGETYDKVIGLDYGADDYIVKPFDIEELLARLRALLRRNKN 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++       G +++  +        ++  L + E  +L+ L  N+   + + ++ +AI+
Sbjct: 122 EDDSEHLLVVGNLQIDKEAFTVLCDHQLIELTKTEFELLKLLAMNKRHVMTREKVLTAIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 182 G-YDNEVETNVVDVYIRYLRNKLKPFGQDQLIETVRGVGYVI 222


>gi|126651767|ref|ZP_01723969.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591445|gb|EAZ85552.1| two-component response regulator [Bacillus sp. B14905]
          Length = 212

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 87/217 (40%), Gaps = 11/217 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F  +G ++    + E    +    R D++ ++          +
Sbjct: 3   ILIADDEVDMLKILQNYFQREGFTVFTATNGEEALTVFYQERIDLAILDWM--MPKVDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R ++   ++ ++ ++   + +        G DD VNKP + + ++ R     ++L  
Sbjct: 61  MVCREMKRTQKIKVLMLTARDTGEDEFKALADGADDYVNKPFYPKVLIMRA----KKLLQ 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   +      +     G    L + E  +L     NR + + + Q+   ++GL 
Sbjct: 117 IEAIQQLHDVSFDVTSKRVWRAGTEIELTKTEFELLRIFSQNRRQILTRDQLLDLVWGL- 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +   V++HI +LR+K+      + + + R +GY
Sbjct: 176 DYMGDPRTVDTHIRRLREKIGE----NIIQTHRGIGY 208


>gi|330973419|gb|EGH73485.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    S        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAASGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +        + E       + + D++ ++  +   G    E
Sbjct: 5   LIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMH--GMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +I+    +P+I ++   +L      F SG DD + KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCHMIKEDYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLRRYHIH 122

Query: 123 NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T             V  G+   LP +E ++L  L +N  +  ++T +   I+G +
Sbjct: 123 TDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI +LR++L+       + + R  GY ++
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSNVTIKTVRGQGYKVE 221


>gi|227893254|ref|ZP_04011059.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864937|gb|EEJ72358.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++ + +RA S   P+I ++   S    +     G D+ V KP             H R +
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPLALIARIKALHRRIM 124

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    A     K   +          +          V  L  +E  +L  +     +  
Sbjct: 125 MKEEIAPKTEAKQDYDIETNHLKISKNRREVMFDDQPVTDLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAQVIQTVWGVGYKFD 235


>gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       +DG  +    +      + +  +  +  ++      G   L+
Sbjct: 5   LIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIM--MPGIDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP    E+LARV A  RR    
Sbjct: 63  VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122

Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N   +    +                  + G    L   E +IL  L +N GK  +   I
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGAELKLTPTEYKILLLLASNSGKVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  I+         N V +HI +LR+KL +       V++   +GY I+
Sbjct: 183 YKEIWAEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V         + G  ++  ++ +    + ++   D+  ++  L       L 
Sbjct: 4   LVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRML--PELDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R++RA  S+ P++ +S    +   +    +G DD + KP    E    +  +    ++
Sbjct: 62  VVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      +   + +    R  +  G    L  RE R+LEY M N G+ + +T +   ++
Sbjct: 122 QQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222


>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 91/230 (39%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G   +   + E      S    ++  ++  L   G   
Sbjct: 5   LILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIML--PGIDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R IR H      P+I ++        +  F+ G+DD V KP   RE+  R+ A+ +
Sbjct: 63  FDVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLK 122

Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +                V        + G    L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQGGVFRDALRSGGLDVDISRHAVTLDGRELVLTLMEFKLLVALLKRKGQAQSREML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S ++ + D  +    +++H+++LR+KL        + + R LGY  + +
Sbjct: 183 LSDVWDV-DRTINTRTIDTHVTRLREKLGTVGAK--IKTVRGLGYKFEED 229


>gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +      +            +  ++  +       +
Sbjct: 6   ILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMI--PKISGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           ++ + IR HS VPLI IS   S          G DD + KP          +  + R   
Sbjct: 64  DVMQHIREHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  +    R   G + +          G    L  +E  IL+ LM +  K   K QI+
Sbjct: 124 YDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           + ++       +EN V  HIS+LR K+         + +   +GY +  N
Sbjct: 184 ALVW-KDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGEN 232


>gi|257438363|ref|ZP_05614118.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257199194|gb|EEU97478.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ D    L    G  +    S      L      D+  ++  L   G    
Sbjct: 9   LLIIEDDVLLNDMTKRLLTQHGYCVTSAYSGSEALLLIEKGTFDLILLDLML--PGIPGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            +   +++   +P+IG+S    + + ++   +G DD + KP  ++E+L R          
Sbjct: 67  TVLEKMKSTMDIPIIGVSAKTDIDSKVNLIRNGADDYITKPFDNQELLVRTEAVLRRFQK 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++       + + ++  + +++     L R E  IL+ LM++  K   K  IF +
Sbjct: 127 STTPNNSKILRFKDLSLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFES 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   ++N +  HI  LRKK  +       + +   LG+ +
Sbjct: 187 VWNE-NFVGDDNAINVHIGNLRKKFAKVNPEEKYIQTVWGLGFKM 230


>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 242

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G + L   +G  ++     E       S +  +  ++  L   G    
Sbjct: 10  ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLML--PGMDGF 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR   +  P+I +S   S    ++    G DD + KP     +LAR+ A+ RR +
Sbjct: 68  TVCDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRSR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +                               R+E  ILEYL  NR   + ++++   +
Sbjct: 128 QTMENEGKLVAGNLRVNFREYTGVRGTEELAFTRKEIEILEYLWNNRDHAIPRSELLRKV 187

Query: 178 YGLFD-EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  + E+V+   V+ HI+KLRKK+ +       + + R  GY +
Sbjct: 188 WGYENAESVDTRTVDIHITKLRKKIEDDPAHPKLLVTFRGEGYQM 232


>gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++     E  +++  +  E    +   ++      +
Sbjct: 3   ILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA +   P++ ++    ++  +   +SG DD + KP  + E+LAR+ A+ RR K
Sbjct: 63  SLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRPK 122

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   I + +  +          L  +E  ILEYLM N  + ++K QI S ++G
Sbjct: 123 NLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NVVE+HI  LRKKL  K   + +++ R +GY I
Sbjct: 183 -YESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRI 222


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           ++++D A + D      GD+G  +    S +    L       D   ++  L   G   L
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
           ++ +  RA    VP+I IS   S    +   + G DD + KP    E++        R  
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +  ++     E G +++    R   V G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKL 231


>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 234

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + DG      + G ++    +      +    +  ++ ++          +
Sbjct: 6   ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEKIHLAIVDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  TMVMKLREQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRYAK 123

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +    +            +D ++  V G++  +  +E  IL  LM N G+  +  
Sbjct: 124 YLKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   ++A+    +  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 EIYERVW--KEDAISTETIMVHVRNIREKIEIDSKNPKYLKVVWGVGYKIEK 233


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLML--PSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR   
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I V        V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 122 KDI------IDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 174

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + D         G  ++        + L    + D+  ++  L    G  V
Sbjct: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++    +Q  +  FDSG DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I          +  +    G+   L   E  +L  L+   G+ V+ + I 
Sbjct: 124 RIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 REVWG-YEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230


>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   ++D  +     +G +++ F + E         + D+  ++      G   
Sbjct: 4   LIYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIM--MPGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118
            EL R IR  S VP+I +S        +   + G DD +             +      +
Sbjct: 62  YELCRQIRKKSDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   N+      I +  D R     GE       E  ++++L  N  K   + Q+   ++
Sbjct: 122 MPKRNDEIRIKDIVIVPDERKVIYNGEEIGFTSMEFELIQFLAQNANKAFTREQLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   E   V+  + ++RKKL++      + +    GY ++
Sbjct: 182 -KYDSFTETRAVDDMVKRIRKKLQSYGCEFNISTIWGYGYKVE 223


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   +         + R D   ++      G     
Sbjct: 2   LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVM--MPGMDGFG 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 60  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 119

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+++              D R+    GE   L   E  +L Y M N G  ++K +I   +
Sbjct: 120 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 180 W-NYDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 220


>gi|298486538|ref|ZP_07004598.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159015|gb|EFI00076.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|16080525|ref|NP_391352.1| two-component response regulator YvcQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311421|ref|ZP_03593268.1| hypothetical protein Bsubs1_18801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315748|ref|ZP_03597553.1| hypothetical protein BsubsN3_18717 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320663|ref|ZP_03601957.1| hypothetical protein BsubsJ_18680 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324948|ref|ZP_03606242.1| hypothetical protein BsubsS_18836 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313022|ref|YP_004205309.1| two-component response regulator YvcQ [Bacillus subtilis BSn5]
 gi|81814897|sp|O06978|YVCP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvcP
 gi|1945655|emb|CAB08062.1| hypothetical protein [Bacillus subtilis]
 gi|2635985|emb|CAB15477.1| two-component response regulator [YvcQ] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019296|gb|ADV94282.1| two-component response regulator (YvcQ) [Bacillus subtilis BSn5]
          Length = 237

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   +  + D+  ++  L        
Sbjct: 4   ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINL--PFFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR   
Sbjct: 62  YWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + +     R+        + D  + E         ++E ++L   +    K V++ ++
Sbjct: 122 EYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LR+KL N    D + + R  GY    N
Sbjct: 182 LEALWDDVDF-VDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVN 230


>gi|87119431|ref|ZP_01075328.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinomonas sp. MED121]
 gi|86164907|gb|EAQ66175.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinomonas sp. MED121]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E               +  +  ++  L   G    
Sbjct: 9   ILIVEDDERLALLTKEYLQKNGYQVEVEADGSRAITRIIETQPSLVILDLML--PGADGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------- 114
            + R +R   + P++ ++        +   + G DD V+KP+  R +LARV +       
Sbjct: 67  TVCRSVREGYKAPILMLTARSDDVDQILGLEIGADDYVSKPVKPRVLLARVQSLLRRSIM 126

Query: 115 ---IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP+ + +  R+  V GE   L   E  +L  L +N G+ +++ 
Sbjct: 127 DVGKQTGGNQGEQNLTFGPLVIDNTRREAWVHGEEIELTSAEFDLLWLLASNAGRILSRE 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +IF  + G+ +   ++  V+  IS++R K+ +       + + R  GY  
Sbjct: 187 EIFGELRGI-EYDGQDRSVDVRISRIRSKIGDDPVHPRRIKTIRSKGYLF 235


>gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A +          + + +   ++ E    L  +   D+  ++  L        +
Sbjct: 7   LLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQIFDLVILDVSLG--DTDGFQ 64

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
           + + IR   + VP+I +S        +     G DD + KP          +   R    
Sbjct: 65  VLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGDK 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  + S  +   GP  + ++        +   L  +E  ++++ M N     +K QI+ 
Sbjct: 125 IKEHQTSLKKIIQGPFILNTETFQLFKNEKEVFLSSKEIMLMKFFMENPNIVFSKDQIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V++N +  ++  LRKKL +         +   +GY  +
Sbjct: 185 KVWN--NSIVDDNTIMVYMRHLRKKLEDDPKNPKFFQTVWGIGYKFN 229


>gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 248

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++   A    +G   +  +       L  S R DV  ++  L   G    
Sbjct: 22  ILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLML--PGLGGY 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSL-QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R       + I    S  +  +   D G DD + KP   +E+ AR+ A+ RR  
Sbjct: 80  QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139

Query: 121 VSNNRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                         +                L  +E +++EYLM N  + +++++I   I
Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N V+ +IS LRKKL++      + + R +GY++
Sbjct: 200 WG-YDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241


>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
 gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++        +G       S+   E   +    D+  ++  L G  G + 
Sbjct: 15  ILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGTSGVEF 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   +       VP+I ++        +   D+G DD V+KP   RE++AR+ A+ RR+ 
Sbjct: 75  VRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLRRIG 134

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ +  E G + +  D            L   E R+L++ M++  +  ++TQ+   ++G
Sbjct: 135 SADGQLLEVGGLAMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDHVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                VEE  V+ H+ +LRK L        V + R  GY  
Sbjct: 195 RSAF-VEERTVDVHVLRLRKALAPYGCDKLVQTVRGAGYRF 234


>gi|154483403|ref|ZP_02025851.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC
           27560]
 gi|149735655|gb|EDM51541.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC
           27560]
          Length = 222

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  L++D + +++  I      G+  +GF                +  ++  L    G  
Sbjct: 1   MIYLVEDDSSIRELVIYALNSTGLEAKGFEKPSEFWKAVEEEEPSLVILDVMLPEESGID 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117
           VL+  R   A  ++P+I  +   S    ++  +SG DD +     +       +      
Sbjct: 61  VLKKIRSNPAIEKLPVIMETAKTSEYDRINGLESGADDYISKPFSMMEMVARVKALIRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K          + V       +V      L  +E  +L  L+ NRG  +++ Q+ + I
Sbjct: 121 EYKHEEKDYTINNLYVCPIKHLVKVDDREVVLTLKEYEMLCLLLKNRGIVLSREQLLNKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +    E   V+ H+  LR+KL      D + + R +GY I
Sbjct: 181 WG-YSFDGESRTVDVHVRTLRQKLGTAG--DVIKTIRGVGYKI 220


>gi|148555062|ref|YP_001262644.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500252|gb|ABQ68506.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   ++         +G+ +E        +   ++ R D+  ++      GE  
Sbjct: 7   LILVVDDDGDLRTLITDFLRANGLRVESAADGAEMDARIAAERPDLIVLDLM--MPGEDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R      +I +S        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  LSILRRVRKPGGPAVIMLSAMGEDTDRIIGLEVGADDYLPKPCNPRELLARIRAVLRRRG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
                A TG           ++             PL   E R+L   +    + +++ Q
Sbjct: 125 EEAAAAATGGAVRRFGPWTLDIVQREVRRLDAPAAPLTDAEFRVLAAFLDRPQRVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  A  G+ D  V +  ++  IS+LRKKL      DP+ + R  GY  
Sbjct: 185 LIEAGKGV-DSDVFDRAIDVTISRLRKKLGPD---DPIRTIRNEGYMF 228


>gi|330873035|gb|EGH07184.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEQKLLHTIRGMGYVLE 220


>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +  F+  +         +  +  ++  +       L 
Sbjct: 5   MLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMV--PRMDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL   
Sbjct: 63  ICRKVREQSDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLDRK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I     
Sbjct: 123 AEPEQNSLFRIDKAQQRIWYQQKSLNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             V + V++SHI  LR+K+ +        + + +   +GY  ++
Sbjct: 182 FDVADRVIDSHIKNLRRKITDAANTGNRHEWIQAVYGVGYRFEY 225


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +         G       S           R DV  ++  L    G ++
Sbjct: 8   ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  R    +P+I ++     +  +   D G DD + KP   +E++AR+ A    + 
Sbjct: 68  LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +    G + +  +     + G    +   E ++L++LMAN  +  +++Q+   ++
Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +EE  V+ H+ +LRK L  K   + V + R +GY +
Sbjct: 188 SN-QLDIEERTVDVHVLRLRKAL--KGQENLVRTVRGMGYML 226


>gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++R    
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN   + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ ++ TQI S ++ 
Sbjct: 121 TSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 325

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD +++ +        +G  +    +      +    + D   ++  L       L 
Sbjct: 86  LVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIML--PDMDGLA 143

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    +P++ ++   +++  +    +G DD V KP    E+ AR+  + RR+  
Sbjct: 144 VLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVHG 203

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +  D R+    G    L   E  +L YLM N  + ++K QI   +
Sbjct: 204 TVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 263

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 264 W-NYDFGGQANVVELYVSYLRKKI-DAGRQPMIHTMRGAGYVL 304


>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 268

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
 gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
          Length = 260

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+     + G +G+S E  +       +  S    +  ++           
Sbjct: 28  ILVVDDDPSVRRIICRVLGSEGISTEEADGGVDAVRMAVSNPYSLIILDLM--MDDMDGF 85

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R +    PL  +S   +    +     G DD + KP     + A+V A  RR  
Sbjct: 86  QVIHHLRTNGILTPLFVLSGRQAEVDKVLALGIGADDYITKPFSTMVLCAKVKACLRRSS 145

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +  A       F    D     +      L  +E  +++Y ++N+ K + K QI+  +
Sbjct: 146 LLSGHANELIAGPFRYICDEMRLFKQGEEIFLSGKECLLMKYFLSNQNKILTKDQIYRYV 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   D+ V++N +  HI +LR K+ +       + + R +GY  
Sbjct: 206 WN--DDFVDDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGYQF 247


>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
 gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  +  +  +P++ ++        L   + G DD + KP   RE+ ARV       +
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens Pf0-1]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R+     P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPAGFKPIDTVRGLGYLFNE 222


>gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum
           SS9]
 gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum
           SS9]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D      G  G S+ G  +      L  S   D+  ++      G+   
Sbjct: 6   ILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNTPDLIILDIM--MPGDDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
            L + +R  S  P+I ++        +   + G DD + K           + IL R  +
Sbjct: 64  TLCQKLRRTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILRRSHS 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +              +   +             L   +  +L   +      +++  I 
Sbjct: 124 SHSTQLARKVTLGEWQLDTVTRQLTHLPSKTTKQLSGSDLSLLALFITKAESILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  +    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 184 REIWGR-EADPFERGIDVQISRLRHHLEDK-DRTLILTVRNQGYML 227


>gi|300788479|ref|YP_003768770.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797993|gb|ADJ48368.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    +G  +E  +         +++  D+  ++  L   G   LE
Sbjct: 11  LVVEDDVTIAGSIAARLRAEGFGVEVVHDGPAAVEADTASEPDLVVLDVML--PGFDGLE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + R I+    VP++ ++        L     G DD + KP   R     + A +  + R 
Sbjct: 69  VCRRIQGRRPVPVLMLTARADETDMLVGLGVGADDYLTKPFSMRVLTARVHALLRRVERS 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+  R   G + +  D R     G    L   E  +L +          + ++ S ++
Sbjct: 129 ASVAGTRIVLGDLEIDVDQRRVARAGVAAQLTPIEFDLLVHFARRPRVVQPRERLLSEVW 188

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                        V+SHI  LR+KL    G D + +   +GY+++
Sbjct: 189 DWDVHGTSAGTRAVDSHIKALRRKL----GADLIRTVHGVGYALE 229


>gi|189095289|ref|YP_001936302.1| Ycf27 [Heterosigma akashiwo]
 gi|189095355|ref|YP_001936368.1| Ycf27 [Heterosigma akashiwo]
 gi|4336895|gb|AAD18001.1| putative His-Asp response regulator [Heterosigma akashiwo]
 gi|5420157|emb|CAB46638.1| transcriptional regulatory gene 1 [Heterosigma akashiwo]
 gi|157694632|gb|ABV65908.1| transcriptional regulatory protein 1 [Heterosigma akashiwo]
 gi|157694698|gb|ABV65974.1| transcriptional regulatory protein 1 [Heterosigma akashiwo]
 gi|157777863|gb|ABV70049.1| transcriptional regulatory protein 1 [Heterosigma akashiwo]
 gi|157777929|gb|ABV70115.1| transcriptional regulatory protein 1 [Heterosigma akashiwo]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD+  ++          G  +    S E    L S    D+  ++  L   G    
Sbjct: 9   ILVVDDQLYIRKILSKRLKILGYEVLTTQSGEEAIKLCSFFCPDLIILDIMLC--GINGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLK 120
           E+   IR+ S VP+I IS    L   L  F  G +D + KP    EI  ++   +     
Sbjct: 67  EVCSKIRSSSDVPIIFISALDKLSNQLKGFRIGGNDFIVKPFSIDEIEEKILLRLKNENN 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
              +        +    +      E+F L   E ++L+  +  + K + +  I   ++G 
Sbjct: 127 KEKSTIRIHNFEINLIKKVLIRNSEIFLLTPTETKLLKVFLLEKNKILTRKTIIKRVWGF 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   ++  VV+ +ISKLR K+ +       + + R +GY  
Sbjct: 187 NYSSHIDIRVVDVYISKLRVKIEDDPTNPQILKTIRGIGYKF 228


>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +   +    +G  +   +  +           D+  ++  L   G   L
Sbjct: 4   ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLML--PGLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++ R++R  S   P++ ++        +   + G DD V KP        R       + 
Sbjct: 62  QVCRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +V+N++   G + +    R    + +   L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LSEPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            + G+ +    +  V+  ISKLR+K  +       + +    GY  
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226


>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 254

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKG 57
            + ++D   +    +    D+G   +  +  E            A  D+  ++  L   G
Sbjct: 16  ILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLML--PG 73

Query: 58  EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------- 107
              LE+ R + R  S+ P++ ++   +++  +   + G DD V KP H            
Sbjct: 74  LDGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALL 133

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
              R         V       G + + SD     + G    L  +E  +L     + G  
Sbjct: 134 RRHRHPDAGDDGIVETPPMVHGELVIDSDRHRVTLAGHALQLTAKEFALLALFARHPGHS 193

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + ++   ++G  +    ++ V +HI++LR K+  +      + +   +GY  
Sbjct: 194 FTRGELLDRVWGE-EFDGYDHTVNTHINRLRNKIETDPARPRFIQTVWGIGYRF 246


>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L   E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A   +       + G  ++     +    + +    DV  I+  L       L
Sbjct: 18  ILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRML--PKLDGL 75

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R++R  H + P + ++   S+   +   +SG DD + KP    E+ AR+ ++ RR  
Sbjct: 76  TLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPP 135

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + +       + +    R     G+   L   E R+LEYL+ + G+ V +T +   ++
Sbjct: 136 LQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             F    + N+VE+HIS+LR KL      + + + R +GY ID 
Sbjct: 196 -NFHFDPKTNIVETHISRLRAKLDRGFTPELIHTVRGVGYKIDV 238


>gi|15895992|ref|NP_349341.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025771|gb|AAK80681.1|AE007771_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding) [Clostridium acetobutylicum ATCC 824]
 gi|325510145|gb|ADZ21781.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding) [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +    L   +    +   S      +      D+  ++  L   G    
Sbjct: 4   ILIVEDDAKINEMIQTLLIKNKYMAKAVFSGTEALLVLEKESFDLILLDLML--PGLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           ++   I    Q+P+I +S    L T L     G DD + KP ++ E++ R          
Sbjct: 62  QVLTKINEQFQIPIICVSAKDDLDTKLGMIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  NR     + + S+     +  E   L  +E +ILE L++N  K   K  IF +
Sbjct: 122 GTSIDKTNRFTFKDLVLDSENHIVTINNEPIELTVKEYKILELLISNPKKVFTKQNIFES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +  ++E VV  H+S LR KL  K G   + +   +GY +  N
Sbjct: 182 VWSE-EYILDERVVTVHVSNLRNKL--KHGDTYIKTVWGIGYKMQDN 225


>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
 gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +   +  E  + L +     +  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + + +R  ++ +P+I ++        +   + G DD + KP + RE        +  R 
Sbjct: 66  SICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRG 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G  R+    R+        PL   E  +L+ L+++  + +++ +
Sbjct: 126 VEAPGAPSQDDQEITFGTYRLNLGTREMFDGDTPMPLTSGEFAVLKALVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLETDPAKPRYIQTVWGLGYVF 233


>gi|67924911|ref|ZP_00518303.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853245|gb|EAM48612.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 245

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+      F  +   +E     +    +      D++ ++  L    E   
Sbjct: 21  ILIVDDDPAVRQLISRFFSYNNYEIEAAADAKNARQIFQKFNPDLAILDVNL--PDESGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114
            L + IR    + ++ ++        L+ F+ G DD + KP +   +  ++         
Sbjct: 79  NLCKEIRQTGTL-VLMLTCMADTNYVLEGFEQGADDYLTKPFNLEILKTKIAALLKRGIG 137

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L   NN  +   + +  +  +  +  EV PL   E  +L +L  +  +   ++ + 
Sbjct: 138 QEFNLNTPNNSVKIKGLTIDPNRCEVSLNDEVLPLTTLEFELLYFLATHPNRVWERSDLI 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           SA++    E   E  V+ HI ++RKK+ +  G   + + R  GY  +
Sbjct: 198 SAVWDNNHEVGVERKVDVHIGQIRKKIDDIHG-QMIKTIRGKGYLFE 243


>gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +    L   +G   ++     +    L      D+  ++  ++      
Sbjct: 6   ILLVDDEEGLLEMIRLLLEREGYSRIDTATKGQQARDLIDQNDYDLIVLD--VMLPDGSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARV 112
            +L + IR  S+VP++ ++   +    L  F  G DD V KP H           +    
Sbjct: 64  FDLCQEIRKTSKVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRRHR 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  +      + G  +V     + +V+G+      RE ++L +   +       ++
Sbjct: 124 YFQEQLAQQQPEVLDYGDFQVIRSAGELQVKGKPVDCSAREFQLLLFFCDHPHHIFNVSE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  ++   +   EE  V  HIS+LRKK+  N      + + R LGY  
Sbjct: 184 LYEKVW-KQEAIGEEKTVVMHISRLRKKIEQNPKQPRFLINVRGLGYKF 231


>gi|302187397|ref|ZP_07264070.1| DNA-binding response regulator [Pseudomonas syringae pv. syringae
           642]
          Length = 249

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          +   G              + DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLKRFNIQARGVTDGAQMRLALDEEKFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   +              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|326204574|ref|ZP_08194431.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985367|gb|EGD46206.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ DG        G  +    S      L  +   ++  ++  L       L
Sbjct: 4   ILIVEDDKLINDGISIALKKGGHMVLSGFSYNEALCLFLNNSFELILLDINL--PDRSGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL   IR  S +P+I I+   + Q  ++ F  G DD + KP     +  R+ A+  R   
Sbjct: 62  ELCNEIRKKSDIPIIFITANDTEQDIVNGFVIGCDDYIAKPFSLEVMNRRIHAVLRRTTP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N   +G I +  D      +  +  L   E ++L  L  N G+ + +  I   ++  
Sbjct: 122 EDKNTFRSGEISINYDKMVVSKREVLIKLTATEYKLLALLTQNSGQVLTRDIILQRLWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +  V+EN V  ++ +LR+K+ +       + +   +GY
Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220


>gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +  +D   +         + G  +E  +  +           DV  ++      G+  L 
Sbjct: 4   LFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIM--MPGKDGLF 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R   +  P+I ++    L   L   + G DD + KP    E++AR+ A+ RR   
Sbjct: 62  ILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSAG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------------EVFPLPRRERRILEYLMANRGKRV 168
                 T                             +V  L  RE  +LEYLM + G+  
Sbjct: 122 EQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRVF 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +TQ+   ++G +D     NVV+  I +LRKK+  K     ++S R +GY  
Sbjct: 182 TRTQMLEHVWG-YDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232


>gi|116494543|ref|YP_806277.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637982|ref|YP_001987148.1| Response regulator [Lactobacillus casei BL23]
 gi|227535480|ref|ZP_03965529.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631859|ref|ZP_04674890.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066090|ref|YP_003788113.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104693|gb|ABJ69835.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712284|emb|CAQ66290.1| Response regulator [Lactobacillus casei BL23]
 gi|227186890|gb|EEI66957.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526324|gb|EEQ65325.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438497|gb|ADK18263.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382058|gb|AEA53534.1| hypothetical protein LC2W_1200 [Lactobacillus casei LC2W]
 gi|327385212|gb|AEA56686.1| hypothetical protein LCBD_1189 [Lactobacillus casei BD-II]
          Length = 242

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 88/236 (37%), Gaps = 18/236 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   +      E        A +    I   L       +
Sbjct: 3   LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + IR  SQ  PLI ++   +    +   + G DD V KP     ++AR+ A++RR  
Sbjct: 63  QVAKEIRKISQTVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122

Query: 119 -------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                             +                    ++  L  +E  +L  L  +  
Sbjct: 123 VGAEVGAEQTTSEPPDGFDVETDHFKLSTKTREAYLDGKQIEGLTPKEFDLLHTLSKSPK 182

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 QVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKVE-KVGPQIIQTVWGVGYKFD 236


>gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 EDL933]
 gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli
           CFT073]
 gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046]
 gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. W3110]
 gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89]
 gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536]
 gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS]
 gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli
           SMS-3-5]
 gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11]
 gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ATCC 35469]
 gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88]
 gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a]
 gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39]
 gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli
           UMN026]
 gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp.
           4_1_40B]
 gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O157:H7 str. FRIK966]
 gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185]
 gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302]
 gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736]
 gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR
 gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli]
 gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073]
 gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli]
 gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K12 substr. W3110]
 gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
 gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli
           UTI89]
 gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator
           protein [Escherichia coli 536]
 gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS]
 gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5]
 gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11]
 gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia fergusonii ATCC 35469]
 gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli S88]
 gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI39]
 gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli ED1a]
 gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli UMN026]
 gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82]
 gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. TW14359]
 gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15]
 gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042]
 gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185]
 gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034]
 gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302]
 gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU
           83972]
 gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146]
 gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli DH1]
 gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431]
 gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR
           [Shigella boydii ATCC 9905]
 gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. EC1212]
 gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli WV_060327]
 gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. G5101]
 gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. 493-89]
 gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G]
 gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520]
 gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482]
 gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252]
 gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263]
 gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863]
 gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007]
 gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
 gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253]
 gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167]
 gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ECD227]
 gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1044]
 gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1125]
 gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli AA86]
 gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
 gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
 gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +  +       +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDGI 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170
           +  +   +  I+     +  ++  +   +            +E  +L  +     +  ++
Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +     +G  +   ++             D+  ++  L        
Sbjct: 7   ILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNSFDLVLVDLML--PEMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S VPL+ IS      + +   D G DD + KP    E+ AR+ +  RR   
Sbjct: 65  TLCKTIRLESNVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHLRRYDR 124

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++ E  P+  F          ++  + G+   L  +E  +L  L  N  +  +KT+++
Sbjct: 125 YLHQHEAQPMIDFLHGLSIDFLKKNVYLNGKPLLLTTKELDLLLLLAKNPCQTFSKTELY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+         N V  HI  LR KL++       + +    GY  
Sbjct: 185 EHIWQQSSLDGN-NTVTVHIKGLRTKLQDNSRTSKFIQTVWGEGYRF 230


>gi|229029585|ref|ZP_04185664.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
 gi|228731707|gb|EEL82610.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++   S E           D+  ++  L   G    
Sbjct: 4   ILIIEDEAVIAELEKDYLEVAGYTVDIDYSGEKGLQSVLLKDYDLLILDIML--PGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E            +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227


>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++           +     +             D+  ++           
Sbjct: 4   ILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIG--MPEMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR HS+VP++ +S        +   + G DD V KP   RE++AR+ AI +R   
Sbjct: 62  EVCREIRKHSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKRTNG 121

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E  P       +++    R     G+   L   E  IL+  +       ++ +I 
Sbjct: 122 PKITGEAKPSQLQAGGVQLDPSYRSVAYNGQPVELTSIEFEILKLFLDRPRMTFSRDRII 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              Y   +  V +  ++SHI  +R KL      + +++   +G+ +
Sbjct: 182 DLAY-PPNIHVSDRTIDSHIRNVRSKLTTAGAPNLIETVHAVGFRL 226


>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  I        + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           +G +D   + N V  HI K+R K ++  +  + + +   +GY  +
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225


>gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 243

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 78/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +   +    + E         R D+  ++  L   G    
Sbjct: 8   ILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVML--PGIDGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
            + R IR   ++VP++ ++     +  +     G DD + KP +  E           + 
Sbjct: 66  AVCREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRSA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R +        G   VF      +       L   E ++L       G+ + +  +  
Sbjct: 126 WYRPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++G +    E   +++ I +LRK    +        + R +GY  
Sbjct: 186 SVWG-YSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRF 230


>gi|320449542|ref|YP_004201638.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149711|gb|ADW21089.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   V +        +G+ +    +            + D+  ++  L     + 
Sbjct: 4   ILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGL--PDLEG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R    +  + +    + + +         D         + L        R  
Sbjct: 62  LEVLKSLRDLDPLLPVLLLTGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   GP+ +  + R   + G+   L   E  +L  L    G+   + ++   ++G 
Sbjct: 122 GKEGRRYFGPLELDLEARKAYLDGQPLKLSATEANLLFVLAQTPGRVYTREELLERVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +    E VV+++I  LRKKL++       +++   +GY  
Sbjct: 181 PEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGYRF 221


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +    +      +      DV  ++  L       LE
Sbjct: 20  LVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGL--PSIDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR +V 
Sbjct: 78  VCRQLRTFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVL 137

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP+ +    R+  + GE   L R E  ILE L    G  +++ 
Sbjct: 138 QSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLSRR 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 198 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 246


>gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V          +G  +           L  S   ++  ++  L  K     
Sbjct: 4   ILIIEDNKDVNLLLKETLISEGYEVISAFDGLEGTKLAKSGEFNLILLDIMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    VP+I +S    + T +D    G DD + KP    E+ ARVA   RR   
Sbjct: 62  EILKEIRTWGDVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121

Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               AE    +     ++ +     G+   L  +E  +LE L+ N  K  +K  I+ A++
Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   ++N V++H+S LR KL+      + +++   LGY +
Sbjct: 182 NE-EYLGDDNAVKTHMSNLRSKLKKVNAEAEYIETVWGLGYRL 223


>gi|258507998|ref|YP_003170749.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257147925|emb|CAR86898.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649325|dbj|BAI41487.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 243

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 89/237 (37%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   +      E        A +    I   L       +
Sbjct: 3   LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  S+  PLI ++   +    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 63  QVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122

Query: 121 VSNNRAE----------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           V                                       ++  L  +E  +L  L  + 
Sbjct: 123 VGAEAGAEQAAPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKSP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 KQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 237


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+ +           L       +  ++          ++
Sbjct: 7   LVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIM--MPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           NN            I +  + +   V GE   L   E +ILE+LM + G+  +  QI+  
Sbjct: 125 NNYKSNSQELKVGGIILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       D+   +           L      D   ++  L   G   LE
Sbjct: 16  LIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLML--PGVDGLE 73

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           + R  RA     P+I  S   S    +   + G DD + KP          + +L R  A
Sbjct: 74  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +  ++         + +    R+  V G+   L  RE  +L +  +  GK  ++  + 
Sbjct: 134 MAKDARMEAGSLNLAGLFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +A++G +     E+ V +HI++LR K+ +       + +    GY  
Sbjct: 194 NAVWG-YQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGYKF 239


>gi|15893581|ref|NP_346930.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023129|gb|AAK78270.1|AE007542_7 Response regulator (CheY domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507701|gb|ADZ19337.1| Response regulator (CheY domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    +             ++  ++  L       
Sbjct: 9   ILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIML--PDIDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S VP++ +S        +     G DD + KP   +E+  RV A  +R++
Sbjct: 67  FEVFRQIRNFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         N  +T    +  +  +     +   L  +E  +L+YL+ N+   ++K +I
Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +A++   D    +N +  HI KLR+KL +       + + + LGY +
Sbjct: 187 VNAVW-EDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKL 233


>gi|54023538|ref|YP_117780.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015046|dbj|BAD56416.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +             +  R DV  ++  L       +
Sbjct: 4   ILVVDDEPQILRALRINLTARGYEVVTAADGRSALRAAAQQRPDVIVLDLGL--PDLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYR 117
           E+   +      P+I +S        +   D+G DD V KP    E      A V     
Sbjct: 62  EVLAGLHGWCSAPVIVLSARSDAADKVAALDTGADDYVTKPFGMEEFLARIRAAVRRAAA 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      T    V    +     G    L   E  +LE L+ +RGK V + ++ + I
Sbjct: 122 TPDLPEPTVVTDAFVVDLAAKKVTRDGADVHLTPTEWSMLEMLVRHRGKLVGQRELLTEI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      + + +  ++++LR KL  +      + ++   GY  +
Sbjct: 182 WGPS-YVGQTHYLRVYLTQLRHKLEPDPSRPRYLITEPGRGYRFE 225


>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R     VP++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 245

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+  G  +    +G  +    +      L  S    +  ++  L        
Sbjct: 14  ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLML--PDIDGF 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------L 109
            + R +R H  + P++ ++        +  F  G DD V KP    E             
Sbjct: 72  RVLRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSR 131

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               A       ++N    G + +    R   ++G    L  RE  +L  L+   G   +
Sbjct: 132 TAKPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIAS 191

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   ++G  D  V    V++H+++LR+KL  +      + + R  GY +
Sbjct: 192 REELLREVWGYDDSVV-SRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRM 242


>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G      N       +      D+  ++           
Sbjct: 4   ILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
              R IR     P+I +S        +  F+ G DD V KP   +E++ R          
Sbjct: 62  SAVREIRKTKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKRTQN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  K   N      I +    R   + G+V  L  +E  +L +L+ N+G  +++ +I S 
Sbjct: 122 KSDKEKENIINIDGINIDLAARILRIDGKVVSLTPKEYDLLTFLIENQGIALSREKIIST 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   ++  +++HI  LRK L        + + R +GY  + 
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRKNLGPYSN--RIVTLRGVGYRFEK 224


>gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +       F  +   +    +      L  +   D+  ++  L   G   L
Sbjct: 5   ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLML--PGLDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114
            + R ++       +P++ ++        +   + G DD + KP + +     I A +  
Sbjct: 63  SVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +       R     + +     +      +  L  +E  +L  L+ N G+ + +  + 
Sbjct: 123 TEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D    +  V+ HI +LRKKL +    D V + + +GY  
Sbjct: 183 DLVWGA-DYEGTDRTVDVHIRRLRKKLGDY--QDRVQTVKQIGYKF 225


>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +              +   D+  ++  L   G   L
Sbjct: 7   ILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIML--PGASGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I ++   S    +   + G DD ++KP + RE+LAR+ A+ RR++ 
Sbjct: 65  DLCRDIRRTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRRMRP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
           S   A  G +  F+       + E+             E  +L   + +  + + + Q+ 
Sbjct: 125 SGGAATGGSLLNFAGWTLDTRRRELTNPAAVVVDLSTGEYDLLLTFLEHPQRVLTRDQLM 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A         +   ++  +S+LRKKL +  G + V + R  GY  
Sbjct: 185 DAAKNRTATGFD-RAIDIQVSRLRKKLESHGGPEMVKTVRGAGYFF 229


>gi|289626997|ref|ZP_06459951.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646795|ref|ZP_06478138.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330867485|gb|EGH02194.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +   S      +       +  ++      G    
Sbjct: 5   ILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVM--MPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           +    IR  S VP++ ++      + +    SG DD + KP    E++       R    
Sbjct: 63  QTMEKIRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      +       + +  D R    Q   F LP +E  +L +   N+GK + K QI+ 
Sbjct: 123 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKK+    G    + + + +GY  + 
Sbjct: 183 EVWGEAYVYDDSN-IMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFNK 229


>gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        ++G  +    +        ++   D+  ++  L   G   +
Sbjct: 6   ILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEPIDLIILDIML--PGTNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S VP+I IS   S    +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 64  ELCRQLRQKSDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRRGGM 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
                ++       DG                   L   E  +L   + N  + +A+ ++
Sbjct: 124 DRQSEQSRRNEARFDGWQVNFPRRELTSPSGAVVDLTGAEFDLLSSFLHNAQRVIARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                        +  ++  +S+LR+KL+ +    P+ + R +GY  +
Sbjct: 184 IELSRTRLG-DASDRSIDVLVSRLRRKLQGEGRDAPITTVRGVGYMFN 230


>gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G                 S   D+  ++  L   G   LE
Sbjct: 12  LIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRML--PGIDGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R +RA    P+I ++   +    +   + G DD V KP   RE    +  V       
Sbjct: 70  VTRRVRAICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALGP 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + + A  GP+ +    R     G+V PL  RE  +L +LM +  +  ++ ++   ++G
Sbjct: 130 LSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
                 + + V  H+ +LR K+ +      +  +   +GY +
Sbjct: 190 WT--FGDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLL 229


>gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii
           M21/2]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLALPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++L++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERLKDNPDFE-IVTMRGIGYK 232


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +   +    +             D   ++  L        
Sbjct: 8   ILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLML--PDLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQVP++ ++    L   +   D G DD + KP   +E++ARV AI+RRL  
Sbjct: 66  EICKKIRIESQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGE 125

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +A              +  +   +G++  L   E +IL  L  N GK   + ++ + 
Sbjct: 126 DTVKANILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREELVTK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I G +D    +  +++HI  +R+K+ ++     + +    GY  
Sbjct: 186 ILG-YDYEGYDRTIDTHIKNIRQKIDDEQN-KYIVTVYGTGYKF 227


>gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541]
 gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G +++  +  +  +    +    +  ++  L   G    
Sbjct: 4   ILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVML--PGADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R + 
Sbjct: 62  AICRAVRRELDIPILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHITRYER 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +T P         +        V G    L  RE  +L +L  +     +K  ++
Sbjct: 122 LKGGEQTAPSVLRFGSLEIQPQTHRVFVNGHEVRLAVREFELLLFLAEHPQIVFSKETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++ L D     + V  H+++LR+K+  +      + +    GY  +
Sbjct: 182 DRVWDL-DAMGSVSTVSVHMNRLREKIEPDPSNPRWLQTVWGAGYRFN 228


>gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A         F      ++     +    L    + D+  ++  L       L
Sbjct: 5   ILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRML--PKLDGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            L   +R + ++ P++ +S    +   +    +G DD + KP    E+L R         
Sbjct: 63  TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ +    E G +++    R   +      L  +E ++L+YLM +  + +++T +F A++
Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 183 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 223


>gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR   
Sbjct: 61  EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
 gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +           + ++    +  ++          +
Sbjct: 4   ILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIM--MPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  KATIKIRQEKNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRRYMN 121

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N        V         +  ++ +V G    +   E RILE L+ N+G+  +  +I
Sbjct: 122 FGNFNNETREDVLRSGGLELNTSTKEVKVDGNQVKVTPIEYRILELLLRNKGRVFSIDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++      VE N V  HI ++R+K+  N      +     +GY I+ 
Sbjct: 182 YEKVWKEESFNVE-NTVAVHIRRIREKIEINPKEPRYLKVVWGIGYKIEK 230


>gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908]
 gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R + S +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PDVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIERDPANPRYIQTVWGLGYVF 233


>gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E   +    + +    R D+  ++  L   GE  L
Sbjct: 8   LLMVEDDPEISRLVRDFMRREGFEIEVAENAAAMDAVLRRLRPDLIILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +   + G DD + KP   RE+LARV A+ RR + 
Sbjct: 66  SICRRLRQSDDIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRRAQA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
           S  R  +          D + +             L   E  +L   +    + +++ QI
Sbjct: 126 SPRREASRRFAFDRFVLDVDARSIETVSGGDAPIQLTSAEFDLLACFVQRPRRVLSRDQI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                G   E  +   V+  IS+LR+KL     G   + + R  GY  
Sbjct: 186 LDFTRGRSAEPFD-RTVDMLISRLRRKLEAASPGTSLITTVRNGGYLF 232


>gi|302186071|ref|ZP_07262744.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G+   L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|226307209|ref|YP_002767169.1| turgor pressure transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226186326|dbj|BAH34430.1| turgor pressure transcriptional regulator [Rhodococcus erythropolis
           PR4]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   ++        +    DV  ++  L        
Sbjct: 4   ILVVDDEPQILRALRINLTVRGYDVVTASTGAGALRAAAERPPDVVILDLGL--PDMDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+   +R     P+I +S        ++  D+G DD V KP    E LARV A  RR   
Sbjct: 62  EVLAGLRGWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGTS 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S    ET    V    +    +GE   L   E  +LE L+ NRGK V + ++   +
Sbjct: 122 AADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLREV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G      E + +  ++++LR+KL +       + ++  +GY  
Sbjct: 182 WG-PAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRF 224


>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L   +R     P++ ++    +   +   + G DD + KP    E++ARV +I  R   
Sbjct: 61  TLLHNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+S I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLEV 221


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         +   ++E  N  +    L  +   D+  ++  L       +
Sbjct: 3   ILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVL--PKLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR+  +  P++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V++    E   +R+     +   Q +   L  +E  +LE LM N  +  +   I   ++ 
Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   E+  V +HI  LR KL+      D V++   +GY +
Sbjct: 181 YEDTPGED-AVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221



 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 3    VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++ DD  + +     L    G  +    S +           DV  ++  L+  G    E
Sbjct: 1065 LVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLD--LVMPGMNGWE 1122

Query: 63   LPRIIRAHSQVPLIGISDY 81
                ++  S    I I   
Sbjct: 1123 TMAGLKKCSDTRDIPIVIC 1141



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD     +    L    G+ +   N            + D+  ++          +
Sbjct: 376 ILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDI--EMPTMSGI 433

Query: 62  ELPRIIRAHSQ 72
           EL ++IR+H Q
Sbjct: 434 ELCKMIRSHDQ 444



 Score = 39.3 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL 38
             ++I+D   + D    LFG   +      +      L
Sbjct: 1194 ILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHL 1230


>gi|268608227|ref|ZP_06141954.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 262

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +     F   G ++   N  E    +     E    +   ++       
Sbjct: 43  ILLIEDDHDICEVITDYFNTKGTAVTAVNDGEKALGIIDEGLESYGLVLLDIMLPNADGF 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I I+     +  +  +D G DD + KP     +  +  A+ +R   
Sbjct: 103 TICRSIRKRSDIPVIFITARGREEDMIFGYDLGCDDYIVKPFLLSVLYMKCEAMMKRADK 162

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E G IR+ +      +  +   LP +E  IL YLM ++   + +  I + ++G
Sbjct: 163 LSGQTVLECGAIRLDTRMLCCFINEKEIELPPKEFAILRYLMEHQDWTIDRDTILNRVWG 222

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D    + VV+SHI KLRK L +      + +    GY +
Sbjct: 223 -YDYFGSDRVVDSHIKKLRKALGSAGKQ--IKTVVGRGYRL 260


>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +  F+  +         + ++  ++  +       L 
Sbjct: 5   MLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMV--PRMDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+  
Sbjct: 63  ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I     
Sbjct: 123 AEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181

Query: 183 EAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222
             V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 182 FDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +RA     P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222


>gi|313123613|ref|YP_004033872.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280176|gb|ADQ60895.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF+  +       ++R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   R   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ +   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIDKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220


>gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 88/236 (37%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +    + +    + +     ++ ++          +
Sbjct: 5   ILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR     P+I +S        +   + G DD + KP    E+LARV +  RR + 
Sbjct: 63  TMTMEIRKKYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP--------------RRERRILEYLMANRGKR 167
                E     + S+     +                       +E  ILE LM + G+ 
Sbjct: 123 ILLLKEHASSTLKSEEEIYCIDALTLNSTTKEVLVDDVPVKLRPKEFMILELLMKHPGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  QI+ A++   +EA+    V  HI KLR+K+  +      +     +GY I+ 
Sbjct: 183 FSAQQIYEAVWN--EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236


>gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 262

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G   +    +             D+  ++          
Sbjct: 33  ILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVM--MPDIDG 90

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + IR  S VP+I +S        +     G DD V KP   +E+  R+ A  RR  
Sbjct: 91  FDVCKRIREFSFVPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150

Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N       +   G I +     +    GE   L  +E  +L Y+  N  + + K  I
Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++   D    +N +  H+ KLR+KL  +    + + + + LGY +
Sbjct: 211 CNEVWD-DDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKL 257


>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +             +    DV  ++  L        
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVML--PDTDGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 120

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     IR     +    R   V GE   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223


>gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM
           12804]
 gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           + G                ++   D   ++  L       L 
Sbjct: 5   LIVEDDADNARYIANGLKELGYDPVITMDGPTALQRATTEHWDAIILDRMLP-NDVDGLS 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           +   +RA   + P++ +S   +L   +    +G DD + KP    E+             
Sbjct: 64  ILWSLRALGRKTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSSS 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     + +          G    L  RE ++L Y+M N G+ + +T + + ++G
Sbjct: 124 GYERRQLTVADLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        + + R +GY +
Sbjct: 184 -YHYDPQTNVIDVHISRLRQKIDGPGEAPLIHTVRGVGYRL 223


>gi|330875656|gb|EGH09805.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 249

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          +   G              + DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNIQARGVTDGAQMRLALDEEKFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   +              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G         +    +    + D+   +          +
Sbjct: 5   IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWM--MPKVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R+ S     P++ ++        +   D+G DD V KP    E LAR+ A+ RR
Sbjct: 63  EVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   S+++ E G I V       +  G    L   E ++L++ M    +  ++ Q+  A
Sbjct: 123 IRPGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLLDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  VE   V+ HI +LRK L     +DP+ + R  GYS+D
Sbjct: 183 VWGN-DVYVEARTVDVHIGRLRKALNKGDEYDPIRTVRSAGYSLD 226


>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
 gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
          Length = 234

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D                 ++     L    R D+  ++  L   G   LE
Sbjct: 7   LVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWML--PGGSGLE 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++       +P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR 
Sbjct: 65  LLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRRS 124

Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +   G     + SD R          L   E  +L++ M++  +  +++Q+   +
Sbjct: 125 AKDSAQGRIGLNGLVLNSDSRRVFAGEIALNLGPTEFNLLQFFMSHPERAYSRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +G  +  +EE  ++ HI +LRK L+       + + + R +GY  
Sbjct: 185 WGA-NVYLEERTIDVHIRRLRKALQTDHADYGELIQTVRGIGYRF 228


>gi|126656994|ref|ZP_01728172.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126621832|gb|EAZ92541.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 237

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +   +E     +    L      D++ ++  L    E   
Sbjct: 10  ILIVDDDPAICQLISRFFSYNNYYIESAADAKTARELFQKLSPDLAILDVNL--PDESGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            L + IR    + ++ ++        L+ F+ G DD + KP +   +         R   
Sbjct: 68  SLCKEIRQTGTL-VLMLTCMTDTNCVLEGFEQGADDYLTKPFNLEILKAKIAALLKRRHG 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L+  NN      + +  +  +  +  EV P    E  +L +L  +  +   ++ + 
Sbjct: 127 GEINLRTPNNSVIIDQLTIDPNRCEVTLNHEVLPFTSLEFELLYFLATHSNRVWERSDLI 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           SA++G   E   E  V+ HI ++RKK+ +  G   + + R  GY  +
Sbjct: 187 SAVWGDNYEIGAERKVDVHIGQIRKKINDLQGQR-IKTIRGKGYMFE 232


>gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +RA     P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222


>gi|229163835|ref|ZP_04291778.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619655|gb|EEK76538.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAIVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|289434787|ref|YP_003464659.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171031|emb|CBH27573.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKKGYETFLKEDFDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTIWGVGYKFDE 226


>gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 270

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D AL            G  +                  DV  ++  L   G   L+
Sbjct: 41  LIIEDDALNARYIAEGLRQQGAHVSVCADGVQGIAQAVGENWDVIILDRMLP-NGFDGLQ 99

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           + + +R+   Q P++ +S   +    +    +G DD + KP    E+ AR+       ++
Sbjct: 100 ILQALRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQI 159

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   +RV    R  E  G+   L  RE R+L +LM +  + V +T +  +++ 
Sbjct: 160 PAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWD 219

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR K+        + + R +GYS+
Sbjct: 220 -YRFDPQTNVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 259


>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
 gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
 gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
           273-4]
 gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 254

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L   GE  +
Sbjct: 14  ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLML--PGEDGI 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + + +R  +  +P+I ++        +   ++G DD + KP + +E        +  + 
Sbjct: 72  SICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 132 RELPGAPSHQLEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 192 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 239


>gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +   +    + E       S + ++  ++           E
Sbjct: 6   LIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIYR 117
             + IR  + +P+I ++   S Q  +  F SG DD + KP    E+              
Sbjct: 64  AIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVSTS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ + +  +   + +         +     L  +E  IL  L  N+G+    ++I+  +
Sbjct: 124 VIEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           +G  +    +N + +HI  LR+KL +       + +   +GY I+ 
Sbjct: 184 WGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   N       +    R D   ++      G    E
Sbjct: 17  LVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVM--MPGMDGFE 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R+     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 75  LLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 134

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 T           +  +    GE+  L   E  +L YLM N    ++K +I   +
Sbjct: 135 VEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDNV 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 195 W-HYDFGGDGNVVESYISYLRRKV-DTQEPQLIQTVRGVGYVL 235


>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G ++    +              +  ++  L    G ++
Sbjct: 8   ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  R  +++P+I ++     +  +   D+G DD V KP   RE+ AR+ A    + 
Sbjct: 68  LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G I +        +  E   +   E ++L++ +A+  +  +++Q+   ++
Sbjct: 128 PEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ H+ +LRK L+       + + R +GY +
Sbjct: 188 GDH-VVIEERTVDVHVLRLRKALKE--AEHLIKTVRSVGYML 226


>gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I  R   
Sbjct: 61  TVLERLRRAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|77406903|ref|ZP_00783927.1| response regulator [Streptococcus agalactiae H36B]
 gi|77174489|gb|EAO77334.1| response regulator [Streptococcus agalactiae H36B]
          Length = 217

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++++G  A   ++G  +      +    L+      +  +   L+       
Sbjct: 3   ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEA--LEKFHEFPIHLMVLDLMLPKRSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I  +  +P+I +S     +T +  FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINGNHDIPVIVLSALGDEETQIQVFDLYADDHVTKPFSLVLLVKRIQALLRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V        V+ E   +  +E  +L+ L+ ++ + +++ QI  +I   F
Sbjct: 121 VEDIWHYQDVAVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILESISNDF 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + +  GY I
Sbjct: 181 ADLPLDRVVDVYIRNLRKKLDL----DCIVTVKNAGYKI 215


>gi|298248618|ref|ZP_06972423.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551277|gb|EFH85143.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 228

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +       SA      ++  L    +  L
Sbjct: 3   ILIVEDNHQLNYELKQSLTYEGHAVDTAYDGDAGLAFAESAPYAAIILDVLL--PVKDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++   ++   +   DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRTLRARGYTVPILLLTARDAIDDRVRGLDSGADDYLVKPFALSELLARLRALLRRTS 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                                   G+   L      +LEYLM +    ++   I + I+ 
Sbjct: 121 PQKTPVLCVGDLTIELATHRVTRGGQQIELTTMLFTLLEYLMRHPNHILSHDMIANHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E +I +LR+K+ +      V++ R  GY +
Sbjct: 181 -YDTPGTPNAIEVYIRRLRRKIDDPFEIKLVETVRGAGYRL 220


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++       ++G      ++      L      D+  ++          +
Sbjct: 5   ILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIM--MPQMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           +    IR    +P+I +S        +    +G DD + KP +      R          
Sbjct: 63  DAAFKIREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +  + G + +    R   V+G+   L  +E  ILE L+ ++G  ++  +I+ A
Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++   D    +N V  HI+K+R+K+ +       + +   +GY I
Sbjct: 183 VW-QEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226


>gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +   A +    +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKKAPDSYDIVTLDLNLPKKDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170
           +  +   +  I+     +  ++  +   +            +E  +L  +     +  ++
Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S     + E      S     +  ++  L        E
Sbjct: 5   LIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLML--PDISGTE 62

Query: 63  LPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIY 116
           + R +R+++       + ++        +  F+ G DD V KP   RE    +  +    
Sbjct: 63  VCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILRRG 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K        GP+ +        V+G+   L   E R+LE++M   G+   + Q+   
Sbjct: 123 TPAKEGAAPLTLGPLTLDVATHRFYVEGKEVLLTALEFRLLEHMMTRLGRVQTREQLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++GL    +E   +++H+ +LR KL        +++ R +GY I
Sbjct: 183 VWGLS-SNLETRTIDTHVMRLRDKLG--PARAHLETVRGVGYRI 223


>gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16]
 gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +     DG+  E             +   D+  ++  L        
Sbjct: 9   ILVVEDEQAIADTILYALRTDGMLAEHCTLGGAALERMRAGAADLVILDVGL--PDLSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S  P++ ++        +   + G DD V KP   R     + A +     
Sbjct: 67  EVCRTLRTFSNAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E        DG     +G    L R E  +L +L+ + G+  ++ Q+   +
Sbjct: 127 GGATAAKSDEVAGFTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMECV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +        +  V++HI  LR KLR     G + + + R +GYS++
Sbjct: 187 W-EDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSLE 231


>gi|326385473|ref|ZP_08207112.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210012|gb|EGD60790.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 235

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   ++        D G  +    +      +  +   D+  ++  L   G   L
Sbjct: 6   ILFVEDDPALRLLTARALRDYGYDVRTAATGAEMWAMLETQPADLIVLDIML--PGGNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S+VP+I +S   S +  +   + G DD + KP   RE+ AR+AA++RR   
Sbjct: 64  ELLRRLRKQSEVPVIFVSARGSEEDRVLGLELGADDYLPKPFGTRELAARIAAVFRRGSA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           +             +G                   L   E  +L   +    + VA+ ++
Sbjct: 124 AGGAVGASHGDFLFEGWTLSPARHELRASDGTLVDLTGAEFELLTTFVEQPQRVVARHRL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +  +      +  ++  +S+LR+KL +      + + R +GY  
Sbjct: 184 LE-LSRMRLGDSSDRSIDVLVSRLRRKL-DCGDGRLIVTVRGVGYMF 228


>gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +          S   D+  ++  L       +
Sbjct: 6   ILIIEDEYNIARFLQLELEHEGYEVGISHDGREGLDKACSDYFDLLILDVML--PSLNGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R  S +P++ ++    +   +   D G DD + KP          R I  R+  
Sbjct: 64  EVLRRLRQKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRMDN 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +++      + +  D      + +   L +RE  +L+Y+M N+   + +  I 
Sbjct: 124 YKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITREMIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++   + NVV+ +I  LR K+ ++ G   + + R +GY I
Sbjct: 184 AKVWG-YEYMGDTNVVDVYIRYLRSKIDDQFGIKLIHTIRGVGYQI 228


>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   + +         G       + E    L S    D+  ++  L G  G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                     +       L   E R+L + M +  +  ++TQ+ 
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHADGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR
 gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 219

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  N  +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  +  P+I I+        +   D G DD + KP    E+L        R + 
Sbjct: 62  EICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELL-ARIRAVLRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G +
Sbjct: 121 DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +    S      +   A+  +  ++  L        
Sbjct: 5   ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLML--PDMFGS 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +++RA   ++P++ +S        +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 63  EILKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKN 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E GP RV  +      QG +  L   E ++L +L  N G+  ++ ++   ++G 
Sbjct: 123 GFGLVVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGE 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  VE  +V+ +I +LR+K+  +      + ++R  GY ++
Sbjct: 183 -EYFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVLE 223


>gi|324991387|gb|EGC23320.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|325695020|gb|EGD36924.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|327460903|gb|EGF07236.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|328946623|gb|EGG40761.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332362340|gb|EGJ40140.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367257|gb|EGJ44992.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 238

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  ++  +  E      +S R DV  ++           
Sbjct: 5   ILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVM--MPKLTGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ R +     + +I ++    +   +   + G DD + KP   RE++AR          
Sbjct: 63  EVCRKLENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G ++V    R   V  ++  L  +E  ++  L+AN  +   +  +   
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANDLVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+ D A     V+ H+ +LRKK+        + +   +GY 
Sbjct: 183 VWGM-DYAGGTRTVDIHMQRLRKKVGEA-EPYLLQTVYGVGYK 223


>gi|154496215|ref|ZP_02034911.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
 gi|150274298|gb|EDN01375.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G              +       +  ++      G   +
Sbjct: 7   ILICDDDKDIVSALDIYLTSEGYKTFKAYDGLEALKVVDQQDIQLVLLDVM--MPGLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R    +P+I ++        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 65  RTTAKLRESKNIPIILLTAKSEDSDKILGLNIGADDYITKPFNPIEVIARVKSQLRRYTT 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  +N    G I +    +   V GE   L   E  IL+ L+ + G+  + +QI+
Sbjct: 125 LGGREKTEDNVIRNGGIAMDDGAKSVTVDGESVSLTPIEYNILKLLLKSPGRVYSTSQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++        EN V  HI  LR+K+  +      +     LGY ++ 
Sbjct: 185 EQVWNDP-SLGSENTVAVHIRHLREKIEIDPANPRYIKVVWGLGYKMEK 232


>gi|330808333|ref|YP_004352795.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376441|gb|AEA67791.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   LLVIDDEPQIRKFLRISLSSQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R  R  S VP++ +S   S    ++  D+G +D V KP   +E LARV A+ R+   
Sbjct: 65  QVLREFRQWSTVPVLVLSVRASEAQKVEALDNGANDYVTKPFGIQEFLARVRALLRQAPA 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    + GP+ V    R   +      L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 GEPQEAALKFGPLTVDLAYRRVLLDDTEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRL 226


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVML--PDMDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
            + R +R      P++ ++    +   +     G DD V KP         I A +   +
Sbjct: 75  TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +  D  +         L   E ++L YLM N G+ V+K QI   
Sbjct: 135 AIENQDDGVVRVADLVLDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+    G D       + ++R +GY +
Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 222

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A    +G  L           L  +A      ++  L       L
Sbjct: 4   ILIVDDDPAIREILRAYLSHEGYELSEAADGVSALALAPAADL--VVLDLML--PEMDGL 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    ++P++ ++     +  +  F+ G DD V KP   RE++ARV A+ RR  
Sbjct: 60  EVARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRRSG 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +         V    R+  + G    L + E  +L  L  + G   ++ ++   ++G 
Sbjct: 120 IHDRLVYGDLEIV-PGSREVYLAGRPVELSKLEFDLLLTLAQHPGMVFSRERLLERVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D    E VV+ H++ LRK+L ++      +++ R +GY  
Sbjct: 178 SDFFGVERVVDVHVASLRKRLGDEPDRPRFIETVRGVGYRF 218


>gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 80/233 (34%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        DG +            L      D+  ++          +
Sbjct: 6   ILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVM--MPNLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E    IR   ++P+I +S        +   + G DD + KP +            R    
Sbjct: 64  ETCLKIREIKEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRRFHM 123

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        N  +   +++  +  +  +   +  L   E  IL  L  +RGK  + 
Sbjct: 124 FGKNTNMLEVEEENIIQIEDLKIKLETHEVLLGDNIVKLTPTEFDILSLLAQSRGKVFSI 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             I+ +++   +    +N V  HI K+R+K+         + +   +GY ++ 
Sbjct: 184 ENIYESVWNQ-EFMTSDNTVMVHIRKIREKIEENPRNPRFIKTVWGVGYKVEK 235


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       + E      S    D+  ++  L   G   
Sbjct: 5   LLLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVML--PGIDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R IR H      P+I ++        +  F+ G+DD V KP   RE+  R+ A+ +
Sbjct: 63  FEVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLK 122

Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +                V        + G+   L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            S ++ + D ++    +++HI++LR+KL        + + R LGY  D 
Sbjct: 183 LSDVWDV-DRSINTRTIDTHITRLREKLGESGRQ--IKTVRGLGYKFDE 228


>gi|325478552|gb|EGC81664.1| putative sensory transduction protein RegX3 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 237

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        DG ++           +  +   D+  ++  L        
Sbjct: 6   ILIVEDEKSISDIVKNYLIRDGYNVFQAFDGLEALKIFDNEEIDLIILDLML--PKMSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S+VP+I  S        ++    G DD V KP  ++E++ RV A+ RR++ 
Sbjct: 64  DVIKNIRNKSKVPVIITSAKVEEIDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
            N                               L + E  I++ L ++  K   + +I  
Sbjct: 124 YNIPRADIIKTSDGRLLMDLKYNRFLKDGEEVFLTKNEFSIIKTLFSSPNKIFTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +GL D    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 184 LTFGL-DYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227


>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 82/230 (35%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ + +  F S E       S   D++ ++  L       L
Sbjct: 5   ILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIML--PDISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111
            + + IR      P+I ++        +     G DD + KP            +    +
Sbjct: 63  SICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +   +  +N   +   + +     +  + GE   L   E  IL  L+  R   V+  
Sbjct: 123 KYNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++F  ++         N +  HI  LR+K+++       + +   +GY I
Sbjct: 183 ELFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232


>gi|254386477|ref|ZP_05001780.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345325|gb|EDX26291.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 235

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 23/234 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRADRPDIALLDVMV--PGMDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGHA 124

Query: 123 NNRAETGPIRV----------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                 G                     ++G +    G    L   E R+L    +  G 
Sbjct: 125 GGPNGGGGADDDADGERGVLTFGELEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGT 184

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++ ++   ++  +D   +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 VLSRDRLLERVWD-YDWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 233


>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D         G      +S++           D+  ++           
Sbjct: 4   ILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIM--MPEMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR K+
Sbjct: 61  QVCEEIRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKI 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +R+  +  +   Q E  PL  +E  ++   +  + K  ++  + + ++G +
Sbjct: 121 EDKVVVFEGLRLDKESFELYYQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
             ++E+  ++SH+  LR+KLR       D + +   +GY 
Sbjct: 180 HVSIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYK 219


>gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 223

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++G  ++  +  E           D+  ++  L    +  L
Sbjct: 3   ILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVML--PSKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     +P++ ++   +    +   D+G DD + KP    E+ ARV A+ RR+ 
Sbjct: 61  SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+    R      +   L  +E  +LE+LM N G  V +  I   ++ 
Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+++ +++ +RKK+        + + R  GY++
Sbjct: 180 EHSFESFTNIIDVYVNYVRKKVDKGFDRKLIHTVRGQGYTL 220


>gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 2/221 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +      +  ++  +++  +  E    +      DV+ I+  L G  G  +
Sbjct: 3   ILIVEDDKRLARLIERVLREERHTVDVAHDGESGLDMLLQGVYDVAVIDWMLPGRDGPSL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R  R  + + L+        +       +    V            R         
Sbjct: 63  CRAARAARLPTALLLLTARGQIEDKMLGFESGADDYLVKPFAFEELLARVRALGRRFNPN 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N+    G I +               L   E R+LEYLM N G+ + + QI   ++  
Sbjct: 123 LGNDELRIGTIVLDLRSYTARRGERRLDLTPTEWRLLEYLMRNAGQTLTRQQILDYVWS- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F+  V+  +V+ ++S LR+KL      DP+ + R +GY ++
Sbjct: 182 FEHDVQPQMVDVYVSYLRRKLNAPGEADPIVTVRGIGYRLE 222


>gi|77461417|ref|YP_350924.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf0-1]
 gi|77385420|gb|ABA76933.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +        Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGAAALEHQRQTPADLIILDIGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKQLRRFSEVPVLFLSARNAEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    R+  +      +G+   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RPVIEASSALFRIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             +A  E  ++SHI  +R KLR  +   +P+ + R LGY
Sbjct: 181 AADAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGY 219


>gi|332358799|gb|EGJ36622.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 249

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 25  ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTIFVREEPHLVLMDIGLPL--FNGY 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 83  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 142

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 143 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 203 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 241


>gi|330959009|gb|EGH59269.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP+ V    R   +  +   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALRFGPLIVDLAYRRVLLDEQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEPGIGYRL 226


>gi|291458570|ref|ZP_06597960.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419103|gb|EFE92822.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 233

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S++  +     + L  + +ED + +   L+  G+   
Sbjct: 7   ILIVEDEEAIAELERDYLELSGFSVDLESDG--GKGLARALKEDYALLILDLMLPGKDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R    +P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 65  EICGEVRERKDIPIILVSARKDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYER 124

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   I++ S  R   V G+  P   RE  +L +L ++     +K ++F
Sbjct: 125 LLGSSRTEIPILEIRGIKIDSTARRVFVNGKEVPFTAREFDLLYFLASHPNHVYSKEELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             I+   D   +   V  HI KLR+K+   N      +++   +GY  
Sbjct: 185 KEIW-KMDSVGDIATVTVHIKKLREKIEIDNLSKPQYIETIWGVGYRF 231


>gi|331082889|ref|ZP_08332010.1| hypothetical protein HMPREF0992_00934 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400030|gb|EGG79683.1| hypothetical protein HMPREF0992_00934 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  L++D   +++  +      G+  EGF               D+  ++  L    G +
Sbjct: 1   MIYLVEDDESIRELLVYTLNGQGLVAEGFAYPSDFWHAMEKKIPDLVLLDIMLPEEDGLE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
           +L+  R  +    +P+  ++   S    +   D G DD + KP    E+++RV       
Sbjct: 61  ILQKLRKKKETKNIPIAMLTAKGSEYDVVKGLDGGADDYIPKPFRMMELVSRVKALLRRG 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +     +     G + V       +V+GE   L  +E  +L   ++N G   ++ Q+  
Sbjct: 121 GQEQPQDDEEYVLGELYVSKKRHLVKVKGEEVTLTMKEFELLLLFLSNPGIVFSRAQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +    E   V+ HI  LR+KL+       +++ R +GY 
Sbjct: 181 KIWG-YQFDGESRTVDVHIRTLRQKLKEAG--RYIETVRGIGYK 221


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVML--PDMDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
            + R +R      P++ ++    +   +     G DD V KP         I A +   +
Sbjct: 75  TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +  D  +         L   E ++L YLM N G+ V+K QI   
Sbjct: 135 AIENQDDGVVRVADLILDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+    G D       + ++R +GY +
Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +    +         + R D   ++           +
Sbjct: 2   LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVM--MPVMDGFD 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
             + +RA     P++ ++   +++  +     G DD V KP    E++AR+  I RR   
Sbjct: 60  AVKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGT 119

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     + +  D  +    G    L   E  +L YLM N G  ++K +I   
Sbjct: 120 LSAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   +  VVES++S LRKK+ +      + + R +GY +
Sbjct: 180 VWD-YDFGGDGGVVESYVSYLRKKI-DTAEPRLIHTIRGVGYVL 221


>gi|298292432|ref|YP_003694371.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928943|gb|ADH89752.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 248

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G  +    S        +    D+  ++      GE   
Sbjct: 28  LLIVDDDRRIRDLLSRFLTEHGYRVTTAESAADARARLAGLTFDLLILDVM--MPGESGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S VP++ ++        ++  + G DD + KP   RE+L R+  I +R   
Sbjct: 86  ELARAVREGSGVPIMMLTARSETGDRIEGLEIGADDYLAKPFEPRELLLRIGNIIKRAVP 145

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       GP        +    GE+  L  RER +L  L    G+ V +  +    
Sbjct: 146 PPAQAIETVRFGPFMFHLARGELTRDGELVRLTDRERDMLRVLGEKPGETVPRQALV--- 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 A  +  V+  +++LR+K+  +      V + R LGY +
Sbjct: 203 --APGVAAGDRAVDVQVNRLRRKIERDPANPAYVQTVRGLGYRL 244


>gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
          Length = 223

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   V      +  + G  ++  +  E    +      DV  ++  +    G  +
Sbjct: 3   ILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRRDGLSM 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           + + R      + P + +S    +   +    +G DD + KP    E+ ARV   A  R 
Sbjct: 63  ISILRE--EGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R + G + +    R  +   E   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKPFDTSMLHTVRGAGYRL 221


>gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  +    S E    L  +   DV  ++  L   G    
Sbjct: 4   ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +Q   +I I+     +  ++    G DD + KP   +E+  R+ ++ RR+ 
Sbjct: 62  TVCQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRRIN 121

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V +  A            ++           E+  L   E  +L +LM +      + ++
Sbjct: 122 VGDEAASKMTDLLISGNFKMDLKNNKFYSSDEIVKLTPTEFSLLHFLMEHPNDLFTRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
             A++G  +   E  VV+ +I ++R+K+  +      + ++   GY    N
Sbjct: 182 LDAVWGE-NYVGELKVVDVNIRRIRQKIEKDPSSPMYLCTEWGRGYLWKVN 231


>gi|314934421|ref|ZP_07841780.1| DNA-binding response regulator [Staphylococcus caprae C87]
 gi|313652351|gb|EFS16114.1| DNA-binding response regulator [Staphylococcus caprae C87]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D   +   ++      F S E           D++     ++  G    E
Sbjct: 6   LVVDDDRKILDYVKSHLINEHFETHAFLSGEEALHFLEKENVDIAI--VGIMMNGINGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ R  +++
Sbjct: 64  LCKTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRSYQIN 123

Query: 123 NNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                       +       V  +   LP +E ++L  L++N      +  I   I+G F
Sbjct: 124 AESELKLGNLTLNQPYMEISVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWG-F 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++  V+ HI +LR+KL        + + R  GY ++
Sbjct: 183 DYEGDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYKVN 222


>gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353]
 gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++L++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERLKDNPDFE-IVTMRGIGYK 232


>gi|330963138|gb|EGH63398.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +      +    L  S   D+  ++  L        
Sbjct: 3   ILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLML--PDMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++   I+  +S++P+I +S    +   L     G DD + KP   RE++ R+ AI RR  
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K +    E G I++    R   +  +       E  IL  ++ N  K   + +
Sbjct: 121 KVKLTTNKETKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G +D +     V+ HI ++RKKL      + + +   +GY  + 
Sbjct: 181 LLDKIWG-YDFSGNTRAVDIHIKRIRKKL--LNHEEAIKTIYGVGYRFEV 227


>gi|319941522|ref|ZP_08015849.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804996|gb|EFW01835.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 256

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 23/241 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           + ++++D   +++  + +   +G       S+       ++ R D+  ++  L    GE+
Sbjct: 5   LLLIVEDELAIQELIVFVCEAEGFRTTRAGSIAEARSALAAERPDLILLDRMLPDRPGEE 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            L   R     + VP+I ++   +    +   D+G DD V KP   RE+ ARV A+ RR 
Sbjct: 65  WLRELRSDAKTADVPVIILTARGNESDRVAGLDAGADDYVVKPFLPRELTARVRAVLRRR 124

Query: 119 -------------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
                                        GP+++     +    G+   L  +E ++L  
Sbjct: 125 GAAVIAGRLSPMPSEETASTADEERVIVCGPLKLNEARFEATAAGKPLKLSAKEFKLLSL 184

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             A  G+  ++  +  A++      V+E  V+ H+ +LRK L      D +++ R +GY 
Sbjct: 185 FAAKPGRVFSRANLLDAVW--QSAFVDERTVDVHMLRLRKALAGSAAEDMIETVRGVGYR 242

Query: 220 I 220
            
Sbjct: 243 F 243


>gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 261

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D   ++           L    + D+  ++  L   G    
Sbjct: 23  ILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGL--PGLDGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R++R    +P++ +S   S    +  F  G DD + KP   RE+LARV A  RR + 
Sbjct: 81  SVCRVLREDLHIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLRREQR 140

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +  +  +         L R+E  +L  L  + G+  A+  IF 
Sbjct: 141 YRQPKRRMALLKSGGLSIDMERHEVSSGTTSLALSRKEFEVLCLLARHAGQVFARDVIFD 200

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++    E+  E  V  HI ++R KL R     + + +   +GY  +
Sbjct: 201 RVWQDDTESYLE-TVTEHIKRIRSKLARVDAHTEYIKTIWGVGYKWE 246


>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 238

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D        DG  +                  D+  ++      G   +E
Sbjct: 12  LVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLM--MPGLDGIE 69

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    +P++ ++        +   + G DD V KP   RE++ R+ ++ RR   
Sbjct: 70  VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         G +   +D R  E  G+   L  RE  +L +L+AN G+  ++ ++   +
Sbjct: 130 QDRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+ ++      + +   +GY  +
Sbjct: 190 WGWR--FGDQSTVTVHVRRLREKIEDRPAQPRRIVTVWGVGYRYE 232


>gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G ++   ++      L      D+  ++  L        
Sbjct: 9   ILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNL--PDINGQ 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           ++ +IIR+   +P++ +S   ++   +   + G DD + KP  + E        +     
Sbjct: 67  QICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEK 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   + +      + +    R   ++ E   L  +E  IL Y +   G  +++  I
Sbjct: 127 NNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + I+G          ++ HI  LR+K+  N    D V +   +GY I
Sbjct: 187 VNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKI 234


>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
 gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 233

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +   S      +       +  ++      G    
Sbjct: 7   ILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVM--MPGMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           +    IR  S VP++ ++      + +    SG DD + KP    E++       R    
Sbjct: 65  QTMEKIRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      +       + +  D R    Q   F LP +E  +L +   N+GK + K QI+ 
Sbjct: 125 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKK+    G    + + + +GY  + 
Sbjct: 185 EVWGEAYVYDDSN-IMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFNK 231


>gi|66045291|ref|YP_235132.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255998|gb|AAY37094.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|322386034|ref|ZP_08059674.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270017|gb|EFX52937.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 228

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A+++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDAVIRQMIKKMLEQWGYQVVAIEDFMQVLTIFVKEEPQLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 62  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   +GE+  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGTDQSLLEYQGVILNLKSMDLVYEGELVTLTKNEFQILRVLFEHSGSIVARDDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL        +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEHGLKHFIETKKGIGY 220


>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD    +          G  +   ++ E    L SS + D+  ++           
Sbjct: 6   ILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVM--MPHLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
                IR  S VP+I ++     Q  +   + G DD V KP    E++AR       A  
Sbjct: 64  STCERIRQFSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLRRAQT 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N     G +++     +     +   L   E R+L     N G+ ++  ++ +A
Sbjct: 124 AEAVTQNRYFTHGNLKIDFARAEVWKDDKPVFLSATEYRLLIQFAHNMGRVLSPEELLTA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           ++G   +  ++ ++   I++LR+KL +       + ++  LGY
Sbjct: 184 VWGTQYKE-DKEILWVSIARLRQKLEDNPHNPVHIVTRSGLGY 225


>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
 gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 237

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G         +      ++   D+  I   L+      +
Sbjct: 11  ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTN-PDIGLIILDLMMPEIDGM 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 70  DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQG 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +V  L   E  IL  L ++  +  +   IF 
Sbjct: 130 EVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 190 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 235


>gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ycbL
 gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  +      E    L      D+  ++  L       ++
Sbjct: 1   MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGMD 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAAI 115
             +IIR  S +P++ IS              G DD + KP    E+       + R    
Sbjct: 59  FLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N       + +  D       GE   L   E ++L    +N  K   K QI+ 
Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +++       ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 179 SVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223


>gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N      ++        D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 223

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +                  DV  ++           
Sbjct: 4   ILVVDDEKSIREVIRTYAEFEGHEVVEAVDGLDAIDKVKEEDFDVIVMDIM--MPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R   
Sbjct: 62  SSYKEIKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       ++  DGR   V  E+  L  +E  +L Y++ N+   +++ ++ + ++G
Sbjct: 122 VEENKTMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+  V++HI  LR  ++       + + R +GY  D
Sbjct: 182 -YDFYGEDRTVDTHIKMLRNSIKEY--RKFIITVRGVGYKFD 220


>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 267

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 47  LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGL--PGMDGLE 104

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    +P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 225 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 266


>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
          Length = 253

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++             S   D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVML--PGIDGF 82

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
 gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
          Length = 229

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++   S E           D+  ++  L   G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      + +   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIGTIWGVGYRF 227


>gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +        +G  +   ++          A+  +  ++  L       +
Sbjct: 5   LLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWML--PELSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+V +I ++        L   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  EVCRELRKSSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEG 122

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   E       +               PL   E ++L  L +  G   ++ Q+  A  
Sbjct: 123 ESVTEEMLKRGDLTISETQCRVWKHDREIPLTPTEFKLLLTLASRPGVVYSRLQLLQAA- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              D   +E   ++HIS++RKK+ +       + +    GY  +
Sbjct: 182 MEDDIHNDERTADAHISRIRKKIEDDPAEPVFIKTVYGFGYRFE 225


>gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
 gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
          Length = 231

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G         +         + D+  ++  L   G   L 
Sbjct: 12  LVVEDEPKLGQLLYDYLQAAGYQPSILQRGDEVIDYVRQQQPDIILLDLML--PGMDGLT 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P+I ++        L   + G DD + KP   RE++ARV  I RR + +
Sbjct: 70  ICRELRKFCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQRA 129

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  ++ P   +  +        ++  L   E R+L+++  N G   ++ Q+   +Y   
Sbjct: 130 ASPDKSRPQLIIDENAFQVRYGEQLLELTPAEFRLLKFMSDNAGTVFSRDQLLDILYDDH 189

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              V +  ++SH+  LR+KL         + S   LGY  D 
Sbjct: 190 -RIVTDRTIDSHVKNLRRKLELLDNEKTFIRSIYGLGYRWDE 230


>gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT]
 gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT]
          Length = 234

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   +    +  S+   ++ +           D+  ++  L        
Sbjct: 5   ILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIML--PEIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ +S        +     G DD + KP    E+ ARV    +R K 
Sbjct: 63  TVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N + +   I  + +            +  +   L  +E  +L  L  N  K   K +++
Sbjct: 123 YNKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +     N +  H+  LR+KL++       + +    GY  
Sbjct: 183 ENVWNQDNLEGN-NTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKF 228


>gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 227

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 94/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +      D+  ++  +       +
Sbjct: 3   LLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPA--ISGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR     VP++ ++   +L+  +   D+G +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G + +               L  +E  +LEYL+ N+ +   +++I   ++ +
Sbjct: 121 RNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                + +V++ +I+ LR+KL      + + + R +GY
Sbjct: 181 H-FDSDTSVIDVYITFLRRKLEAAGCGNIIQTIRGVGY 217


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +       D+   +    + +           D   ++  L   G   L
Sbjct: 7   ILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR++
Sbjct: 65  EICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVE 124

Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +    +   RV           R+  V G    L  RE  +L +   + GK  ++T +
Sbjct: 125 ALSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231


>gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
 gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ ++          + 
Sbjct: 13  LVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEEIHLAIVDIM--MPRLDGIR 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR +  
Sbjct: 71  MTMKLREKYDFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYRKF 130

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             R                 D  +  V GE   L   E +IL  L  N G+  +  +I+ 
Sbjct: 131 MERLAPRENIHVIGGLEINEDTVEVSVDGEPVRLTPIEYKILLLLAKNPGRVFSSEEIYE 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   ++A+  + +  H+  +R+K+  +      +     +GY I+ 
Sbjct: 191 RVW--QEKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEK 236


>gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 228

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A ++         +G  +   ++     +     + D+  ++           
Sbjct: 5   ILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEKPDLVVLDLM--MPEMNGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E        S  P+I ++        +   + G DD + KP + RE++AR+        +
Sbjct: 63  EFLLAFSKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVLRRTHK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +    G + +        V  +   L R E  IL   M   G   ++  +   + 
Sbjct: 123 PTLEPDLIRAGDLVLDRGSATVLVGEQQLSLTRSELEILATFMTAPGLIFSRLDLLDRLS 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                   E  ++ HI  LR K+         +++   +GY  
Sbjct: 183 LGDAYEGYERSIDVHIRNLRTKIEPDSRQPRYIETVYGMGYRF 225


>gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +      G+ G +++   +     +       D+  ++  L   G    
Sbjct: 3   LLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVML--PGLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +L ++IR     P++ ++   +++  +   + G DD + KP    E+LARV  +  R   
Sbjct: 61  QLLQLIRQRGATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R     G+   L  +E  +L  L + +G+ +++T I S ++ L
Sbjct: 121 REAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWNL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N+VE  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNMVEVAVRRLRSKVDDPYMPKLIHTVRGVGYQLE 220


>gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 228

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +      +    L  S   D+  ++  L        
Sbjct: 3   ILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLML--PDMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           ++   I+  +S++P+I +S    +   L     G DD + KP   RE             
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +    K +    E G I++    R   +  +       E  IL  ++ N  K   + 
Sbjct: 121 KVKLTTNNKETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   I+G +D +     V+ HI ++RKKL      + + +   +GY  + 
Sbjct: 181 ELLDKIWG-YDFSGNTRAVDIHIKRIRKKL--LNHEEAIKTIYGVGYRFEV 228


>gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70]
 gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218]
          Length = 227

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R   + G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|294630664|ref|ZP_06709224.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833997|gb|EFF92346.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 233

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 66  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 123 NNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                                  V +DG +    G    L   E R+L    +  G  ++
Sbjct: 126 GGARAAADSGEVDGGVLTFGDLEVDTDGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 186 RDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 231


>gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 235

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 83/231 (35%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G S+  ++  +        +  D+  ++          +
Sbjct: 5   IALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDI--KMPIMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----------HREILA 110
           E+ R +R  S VP+I ++             SG DD + KP              R   A
Sbjct: 63  EVLRRLREKSMVPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRRTEA 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R          +++    G + +  D       GE   L   E  ILE L    G   ++
Sbjct: 123 RFQEKSEETPQNSHIIVRGRLVMDPDRHQVSWDGEDISLTVTEFLILEALAQRPGFVKSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+    Y   D  V++  ++SHI +LR+K R     F  +++   +GY  
Sbjct: 183 DQLMDTAY-QDDVYVDDRTIDSHIKRLRRKFRQVDNQFKSIETLYGIGYRF 232


>gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++       + G  ++          + +S    +  ++  L       L+
Sbjct: 4   LVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPM--LDGLK 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           +   +RA  +Q P++ +S   S++  +    +G DD + KP            +    + 
Sbjct: 62  VLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      +R+            +  L ++E  +L+YLM +    V++  +F +++
Sbjct: 122 SATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 182 S-YHFDPKTNVIDVHIANLRKKLEEGGEPSLIHTVRGAGYVL 222


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A  ++       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIML--PDLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P++ ++   S+   +   +SG DD + KP    E+LARV  I RR  
Sbjct: 61  RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V  +  +   G + +    R     G    L  +E  +LE  +  +G+ + ++ I S ++
Sbjct: 121 VPLSGNQLSVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  + +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAVRRLRMKVDDGHDIKLIQTVRGMGYRLDV 223


>gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 237

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +           +       ++ ++          +
Sbjct: 6   ILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREEIHLAIVDVM--MPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V+KP    E+LARV +  RR K 
Sbjct: 64  TMTVKLREAYDFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYKK 123

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +  E    +               D  +  V  +   L   E +IL  L+ N G+  +
Sbjct: 124 YMDMLEEKEQKEKSNVYSIGGLELNEDTVEVTVDEKPVKLTPIEFKILALLIKNPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +I+  ++   + A+  + +  H+ K+R+K+  N      +     +GY I+ 
Sbjct: 184 AEEIYERVWN--ERAINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEK 235


>gi|253579586|ref|ZP_04856855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849087|gb|EES77048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 224

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F                       + D+  ++          +
Sbjct: 5   ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R+IR+    P++ ++        ++   SG DD + KP   RE+ AR+        R
Sbjct: 62  EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   + G      + E +I+E+L  + G+   K +I+  + 
Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYEQVC 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +   +   + ++RKK+ +    + +++   +GY 
Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221


>gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 224

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         ++G +++     E      +    DV  ++  L        E
Sbjct: 4   LIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIML--PKMSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           + R +R    + P++ +S    ++  +     G DD + KP    E++AR+       + 
Sbjct: 62  VIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTKT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++ +   + +    ++    G+   L  +E  +L+YL+ N  + + +  I   ++ 
Sbjct: 122 IEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D  ++ NVV+ HI +LR+K+  +     + + R  GY +
Sbjct: 182 I-DFDIDSNVVDVHIHRLREKIDKRFEKKLIHTVRGFGYVL 221


>gi|218441145|ref|YP_002379474.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173873|gb|ACK72606.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 241

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ +     F      L+  N       + +    D+  ++  L        
Sbjct: 6   ILVVEDDTVILELIFRFFKQKNYQLKTANDGRSALEIFTYFNPDLVILDINL--PDIIGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L   ++  + V ++ ++   + +  +  F  G DD V KP   +E+  RV A+ +R   
Sbjct: 64  DLCERMQKSTDVYVMMLTSRINPEDKIQGFRRGADDYVTKPFDLQELEWRVKALLKRQAR 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   N      + +  + R+  V G+   L   E  +L +L ++ GK  ++ ++
Sbjct: 124 REVISSQTPLNVLVWKDLTIDPNRREVTVLGQGIELTALEFDLLFFLASHPGKVWSRAEL 183

Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
              ++ +      +  VV+ HI ++R+K++        + + R +GY  + 
Sbjct: 184 IEKVWKVSCSISSDLRVVDVHIGQIRRKIQAVSSRSYLIKTVRGVGYKFEV 234


>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G              + + A  D+  ++   +       
Sbjct: 7   IMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMFAEATPDLVILDI--LMPEMDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRAHS VP+I +S        +   + G DD V KP   RE++ARV A  RR   
Sbjct: 65  EVCKKIRAHSDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRRRLT 124

Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               A +              R+  D R          L  RE RIL+ LM    K   +
Sbjct: 125 EAKPAVSLQEKLGAILEKGRLRLDVDARIVSWDSVRVELTHREFRILQTLMGYPEKIFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    YG  D  V +  ++SHI  +RKKL    G + + +   +GY +
Sbjct: 185 EELIDGAYGR-DHFVSDRTIDSHIKSVRKKLAAVGG-EAIRTAHGVGYQL 232


>gi|71733992|ref|YP_273462.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487334|ref|ZP_05641375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289647322|ref|ZP_06478665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298485866|ref|ZP_07003942.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554545|gb|AAZ33756.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298159555|gb|EFI00600.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320329839|gb|EFW85827.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330867883|gb|EGH02592.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874409|gb|EGH08558.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330890476|gb|EGH23137.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|331009063|gb|EGH89119.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|256378111|ref|YP_003101771.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922414|gb|ACU37925.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 232

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D     +        D   +   +              D+  ++  L       
Sbjct: 4   LILIAEDDESQAELLRRYLERDHHEVAVVHDGRAAIDTARERGPDLVVLDLML--PKVDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R++RA S V ++ ++   +    L   D G DD + KP   RE++ARV  + RR  
Sbjct: 62  LDVCRVLRAESDVLVLVLTARSTEDDVLLGLDLGADDYMTKPFSPRELVARVRTLLRRRV 121

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GPI V     +    G        E R+LE L +   +   + Q+   +
Sbjct: 122 EPRAPDPLLRAGPIAVDPVRHEVTAHGARVECTPGEFRLLETLASEVDRVFTREQLLRRM 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G FD  +    +++H+  LR+K+  +      + +   +GY +
Sbjct: 182 HG-FDRYITGRTIDAHVKNLRRKVEPDPRRPVHLVTVYGIGYKL 224


>gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G S +             +   D+  ++  L       +
Sbjct: 13  LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVML--PELSGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    VP+I I+    +   +   DSG +D + KP    E+ AR+  + R+ + 
Sbjct: 71  ELCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRES 130

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+       R+  + R   +  E   L  RE  +L Y++ N+ + V++ QI +A++G 
Sbjct: 131 KANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG- 189

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD     N+V+ +I  LR K+ +      + + R +GY++
Sbjct: 190 FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229


>gi|255281522|ref|ZP_05346077.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255268010|gb|EET61215.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       ++G  +   +          +    +  ++  L         
Sbjct: 7   LLVEDDQAIVENLTGFLKEEGFCVTAVSGQAAAMEALEAREFALVLLDVTLAQ--GNGYS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               I++   +P+I ++      + +   D G DD ++KP   RE+++R+  + RR   S
Sbjct: 65  TCTAIKSRGDIPVIFLTALGDEFSVVTGLDMGADDYISKPFRPRELVSRMRTVLRRSGRS 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + V       E +G    L   E R+L   + +RG  + ++ +   I+    
Sbjct: 125 QRVMKIGNLSVDMVKGTVEKEGREIYLSAMEYRLLLIFLNHRGMVLTRSVLLEEIWDAAG 184

Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           E V +N +  +I +LR+K+ +       + + R +GY +
Sbjct: 185 EFVNDNTLTVYIKRLREKIEDDPANPQILLTVRGVGYRL 223


>gi|168183441|ref|ZP_02618105.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673489|gb|EDT85450.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  KLLSNIRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N      ++        D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +         G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A    P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G+   L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N      + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLE 222


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L   A+ D   ++  L       L
Sbjct: 7   ILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLML--PHVDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR     +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +
Sbjct: 65  EICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N +     + +    R  ++ G+   L  RE  +L +   + G+  ++  +  
Sbjct: 125 AMGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +     E+ V +HI++LR K+  +    + + +    GY  
Sbjct: 185 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKF 229


>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + D    +F D    +    + E       +   D+  ++           
Sbjct: 5   ILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ-VDLVILDIM--MPKMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  +++R   + P++ +S   S    +  F  G DD + KP   +E++ARV A  RR K 
Sbjct: 62  EFCKVVREQIKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREKR 121

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +         +     D  + G    +  +E +ILE L  N G+  +K QI+  I
Sbjct: 122 ERVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +GL D   + N +  HI+ LR KL   +    + +   +GY ++ 
Sbjct: 182 WGL-DAVGDLNTIIVHINNLRAKLSLGMSTYHIKTVWGVGYKLEK 225


>gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
 gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
          Length = 233

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G         +           D+  ++  L   G   +
Sbjct: 11  ILIVEDEPKLGQLLFDYLQAAGYVPALLMRGDEVIPYVQKHFPDLILLDLML--PGMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++        L   + G DD V KP   RE++ARV  I RR + 
Sbjct: 69  SVCRELRKFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQN 128

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      +   + +  +        ++  L   E R+L++L  N G   ++ Q+   +Y
Sbjct: 129 THTHSLEQQQKQLVIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILY 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
                 V +  ++SH+  LR+KL         + S   LGY  D 
Sbjct: 189 DDH-RIVTDRTIDSHVKNLRRKLEFLDPEKTFIRSIYGLGYRWDE 232


>gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L    +   
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGL--PDKDGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L    R      P++ ++   +L+  +   D+G DD + KP    E+ AR  A I R  
Sbjct: 61  TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   I +    +   +QG    +  +E  +L  LM   G+ V +  +   IY 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D     N +E HI  LR+KL    G   + + R +GY ++
Sbjct: 181 WQD-DPSSNTLEVHIHNLRRKL----GKTRIRTIRGVGYRLE 217


>gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 262

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     S +P++ ++     +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     GP+ +  +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++    +  N+           + D+  ++  L   G   +
Sbjct: 4   ILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIML--PGLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++   IR  SQVP++ ++   + +      DSG DD + KP    E+ ARV      I  
Sbjct: 62  QVCSKIRETSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++  S+       + +  D +     G +  L   E R+L   M +  K  ++  I   +
Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D     NVV+ +++ LRKKL        + +   +GY +
Sbjct: 182 WGI-DFESGTNVVDVYVNYLRKKLMQFGDSKLIHTVIGMGYVM 223


>gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +  +             +  S + D+  ++          + 
Sbjct: 7   LIVDDDENIRELLTIMLKNQNIDSLCAKDGIEALEILKSNKIDLILLDVM--MPRMDGMM 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +     G DD + KP +   ++A++ +  RR K  
Sbjct: 65  ACMKIRESLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYKEF 124

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N+             + +  D    ++      L   E +IL +L  N+   ++  QI+ 
Sbjct: 125 NSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++       +   V  HI +LR+KL+     D + +   +GY I+
Sbjct: 185 NVWEEPYMEFD-RTVTVHIRRLRQKLK----KDYIKTVWGVGYKIE 225


>gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 223

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   +++       + G  +E F                +  ++  L G  G  +
Sbjct: 4   IYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKNIPSLILLDIMLPGEDGLDI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  +A + VP+I ++   S    +   D G DD + KP    E+++RV A      
Sbjct: 64  LTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRRTS 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++     I +  D     V G++  L  +E  +L+YLM N+G  +++ +I   ++
Sbjct: 124 RMNEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G F+   E   V+ HI  LR+KL        + + R +GY I+
Sbjct: 184 G-FEYEGESRTVDMHIKTLRQKLGAAGS--CIKTVRNVGYMIE 223


>gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 231

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   ++F   G   +   +S E    +      D+  ++      G   
Sbjct: 6   ILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQEPDMMILDVM--MPGMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
               + +R  S++P++ ++     +     F++G DD + KP   +E+L RV AI  R  
Sbjct: 64  FAALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVY 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +       V  +    +  GE   L  +E ++ E L  N+G+ V    +  AI G
Sbjct: 124 PEKERKVFFDAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            F     E+ + +HI  LR+K+         + + + +GY ++
Sbjct: 184 DF-WQGYESTLATHIRHLREKIEENPSKPVALVTIKGIGYRLN 225


>gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
 gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +       +DG  +    +      + +  +  +  ++      G   L+
Sbjct: 5   LIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIM--MPGIDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP    E+LARV A  RR    
Sbjct: 63  VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRRYVYL 122

Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N   +    +                  + G    L   E +IL  L +N GK  +   I
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNGGKVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  I+         N V +HI +LR+KL +       V++   +GY I+
Sbjct: 183 YKEIWTEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|307946075|ref|ZP_07661410.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
 gi|307769739|gb|EFO28965.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
          Length = 242

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G       S         +A  D+  ++      GE  L
Sbjct: 8   ILVVDDHRDIRETLARYLIKNGFRATSVESAAHARKALKAAVIDLVVLDIM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R + A   +P+I ++        +   + G DD V KP + RE+LAR+ A+ RR   
Sbjct: 66  SLCRHLVATGSIPVILLTAMADDMDRVIGLEIGADDYVTKPFNPRELLARIKAVLRRTNT 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
                +     + S        G+           PL   E ++L   +      + + Q
Sbjct: 126 EPKDRDPLDHELLSFEGWQLHVGKRELFDAEGAPVPLSSGEFQLLCAFLKRPKMVLNRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G     V +  +++ +S+LRKK+  +      + +    GY  
Sbjct: 186 LMDLTTGRM-PNVFDRSIDNQVSRLRKKIEVDPKDPKLIKTVWGGGYMF 233


>gi|257792735|ref|YP_003183341.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325831086|ref|ZP_08164410.1| putative transcriptional regulatory protein ResD [Eggerthella sp.
           HGA1]
 gi|257476632|gb|ACV56952.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325487007|gb|EGC89453.1| putative transcriptional regulatory protein ResD [Eggerthella sp.
           HGA1]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G  +                  D+  ++  +        
Sbjct: 16  LLVVDDEPEIVALLDEYFTGLGYRVLTAEDGATALKRA-EQSPDLIVLDVGMPL--MDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
            + R +R H   P++ ++        L+ F++G DD V KP     + ARV A      R
Sbjct: 73  AVCRRLREHLTCPILFLTARVEDVDALEGFEAGADDYVLKPFSLAVLGARVKAHLARDNR 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V       G I +    R     G    L RRE  I+ +L  + G+   + +I   + 
Sbjct: 133 QHVRAEVRFDGDIAIDYRSRTVTAAGRPVELTRREFDIVAFLSKHPGQVFDRDRIHERV- 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           G ++   +  VV  HI ++RKKL       DPV++   +GY 
Sbjct: 192 GGWENESDSQVVTEHIRRIRKKLAAAGAEPDPVETVWGMGYR 233


>gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 8/215 (3%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++        + G       + +    +  +   D   ++          + + + IR  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIM--MPQMDGISVCKEIRKT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRLKVSNNRAE 127
           S VP+I ++        ++    G DD + KP         +  V   Y + +      +
Sbjct: 59  SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQ 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GPI +    R  E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A   
Sbjct: 119 FGPIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHSGQVFSREQLLEKVWG-YDYAGST 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             V++H+  +R KL        + +   +GY  + 
Sbjct: 178 RTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 210


>gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 219

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++       + G  + GF+              D+  ++  L    +  
Sbjct: 1   MIYLVEDDKSIRNLVEYALREKGYEVCGFSDGSNIVDKVRDENVDLLILDIML--PEKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S +P+I ++        +   D G DD + KP    E+++RV A+ RR K
Sbjct: 59  LSILKEIREFSNLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSK 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    T      +  +       +   L  +E  +L  LM+N G  +++      I+G
Sbjct: 119 KKDKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+       + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRSKLKETG--KYIHTVRNLGYKL 216


>gi|310778072|ref|YP_003966405.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747395|gb|ADO82057.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          + +     ++      + +S   D+  ++  L        +
Sbjct: 7   LLVDDDIEICQMIKKALDPENIETLTISTGREARNVINSQAFDLIILDIML--DDTDGFQ 64

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           L + I+A    +P+I +S        +     G DD + KP          +   R +  
Sbjct: 65  LLKKIQAEDIEIPVIFLSGKQQDYDKILALGMGADDYITKPFSMSVLIAKIKAHLRRSDK 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + L+ S+ +    P  +  D       GE   L  +E  ++++ M N  +   K Q++ 
Sbjct: 125 IKELQTSSRKITKAPFVLNIDTYQLFKDGEEIFLSSKEIMLMKFFMENPNRVFTKEQLYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  ++ N +  +I  LRKK+ +     + + +   +GY  +
Sbjct: 185 KVWN--NTIIDNNSIMVYIRHLRKKIEDDSKNPEYIQTVWGIGYKFN 229


>gi|310828577|ref|YP_003960934.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740311|gb|ADO37971.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 229

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G +    +D  +     S++      +    D+  ++  L       L
Sbjct: 8   ILIVEDDRALNQGLVLSLKNDSYTTLSAFSIKEAREKLTDNTFDLIVLDVNL--PDGNGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           EL + IR  S VP+I ++        +   ++G DD + KP           A + R  K
Sbjct: 66  ELCQEIRRRSAVPIIFLTANDMEMDVVIGLENGGDDYITKPFSLAILRARIAALLRRSQK 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              NR +        D        +   L + E+++L+ L+ANRG  V +  +   ++G 
Sbjct: 126 ERQNRIKIDAFTFDFDQMVFLKGEDELTLSKTEQKLLKLLLANRGTTVTRDLLLEKVWGD 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             + V+EN +   I +LR KL +       + +   LGY
Sbjct: 186 SMDFVDENALSVTIRRLRSKLEDNSSKPVYIQTVYGLGY 224


>gi|225569381|ref|ZP_03778406.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM
           15053]
 gi|225161589|gb|EEG74208.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++ G       +G  +   +       L    + D+   +  L       L
Sbjct: 4   ILLLEDDESLRRGISLKLEKEGYDVLCASGSREARRLFDENKTDLIISDITLE--DGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S V ++ ++        ++ +D+G DD + KP     ++++V A  RR + 
Sbjct: 62  DFCREIRRVSDVFILFLTALDQEVDIVNGYDTGADDYITKPFSLMVLISKVNAFMRRREH 121

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +                      ++GE  PL ++E ++L Y M +  + ++K QI  A++
Sbjct: 122 TGGEGTVLTAPDLTLDCKEMKVFIKGEETPLSKKEMQLLAYFMEHPRQIISKEQILEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  + V++N V  +IS+L+KKL      + + + R +GY
Sbjct: 182 DVDGQFVDDNTVPVNISRLKKKLGGDSETEYIKNIRGIGY 221


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRLDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451]
 gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L  +   D+  ++      G+   
Sbjct: 7   ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
            L + +R HS VP+I ++        +   + G DD + K    RE       IL R   
Sbjct: 65  TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +   +          V  L   +  +L   + +  K + +  I 
Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKLLTRDDIA 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228


>gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++      +    +      ++  ++          L
Sbjct: 5   ILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIM--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ +  R    +P++ +S        ++   +G DD V KP +H       R +L R   
Sbjct: 63  EVCKRARQKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++         N V  H+S+LR K+     G   + +   +GY I+ 
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGYKIEK 230


>gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
 gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G +L+   +LE    + +S   D+  ++  L        
Sbjct: 4   ILMVEDDSTIAFAVKYAVEQEGFNLDIAENLENARKIVNSKEYDLILLDVML--PDGNGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + +R H    P+I ++        +   D G DD + KP   RE+++R+ AI RR  
Sbjct: 62  EFLKQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSA 176
            S +  +             E +         L   E ++L  L+ N+   +++ QI   
Sbjct: 122 KSQDSNKKILKFKNISIHTLEARVFKNNEEIFLTSAEYKLLLILIQNKNMVLSRAQILEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++ +  + + +N +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LWDVTYDFINDNTLSVYIKRLREKIEDDSSKPQYILTVRGLGYKWN 227


>gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct]
          Length = 231

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++          G  +    + E      +  R D+  ++  L        
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV        +
Sbjct: 66  DILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        GP++V    R   ++G    L R+E  +L  L  + G+ V + Q+   I+
Sbjct: 126 GESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227


>gi|330988080|gb|EGH86183.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  + KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILTKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 219

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I  R   
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+S I +LR K+ +      + + R +GY +
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVL 219


>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 232

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 12  LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R     +P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 70  VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 190 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 231


>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 13/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  +   +          +   D+  ++  L   G   LE
Sbjct: 6   LVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVML--PGFDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV          
Sbjct: 64  VCRRVQAQRAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRRVDRE 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     +NR   G + V    R     G    L   E ++L +L        ++ ++ S 
Sbjct: 124 RERGSRSNRIVLGDVEVDLGERRVLKGGSEVHLTPTEFQLLVHLAGRPRAVQSRERLLSE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +       V+SH+  LR+KL    G   + +   +GY+++ 
Sbjct: 184 VWDWPE-GTSTRTVDSHVKALRRKL----GGGLIRTVHSVGYALEV 224


>gi|320095894|ref|ZP_08027520.1| DNA-binding heavy metal response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977174|gb|EFW08891.1| DNA-binding heavy metal response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 219

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   E +++           R  +  ++  L        
Sbjct: 4   ILIVEDERRIASFVAKGLRAAGFVPEVYSTGAEAVEAALQGRGALMLLDVGL--PDIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR   S +P+I ++   S+   +   + G DD V KP    E+LARV    R   
Sbjct: 62  EVLERIRGQGSGMPVIMLTARTSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREEA 121

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R   V      L  RE  +LE  M N G+ +++ Q+ SA++
Sbjct: 122 PAAGGLTLARGSLVLDLKSRRARVGERWVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D     NVV+ ++S LR+K+    G D  ++ R +GY +
Sbjct: 182 GI-DFDGGSNVVDVYLSYLRQKI----GKDRFETVRGMGYRL 218


>gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 237

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +G  +E   +         +   D+  ++  L       +E
Sbjct: 6   LVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVML--PEINGVE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR   +  P+I ++   +    +   D G +D + KP    E+LAR+ A  R    
Sbjct: 64  VLKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLE 123

Query: 122 SNNRAETGPIRVF-----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               A     +                R    +G+   L  +E  +L YLM ++ + + +
Sbjct: 124 PAATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++G FD   + NVV+ +I  +RKK+ +      + + R +GY I
Sbjct: 184 DQMIQDVWG-FDFVGDTNVVDVYIRYVRKKIDHGYKKKLIKTVRGVGYCI 232


>gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato K40]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +RA     P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222


>gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +     +   ++   +         S   DV   +  L   G    
Sbjct: 3   ILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIML--PGLDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIY 116
           E+ + IR +    P++ ++    ++  +   D G DD + KP    E++AR+        
Sbjct: 61  EILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNP 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++N  +   + V  +  D         L  RE  ILEY++ N+ + +++ QI   
Sbjct: 121 TSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+  +D     NV++ +I  LR+K+        + + R +GY +
Sbjct: 181 IWN-YDYEGGTNVIDVYIRYLRRKIDKGFEPKLIHTIRGIGYVL 223


>gi|167746576|ref|ZP_02418703.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662]
 gi|167653536|gb|EDR97665.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662]
          Length = 227

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V         + G   E   S             D+  ++  L  K     
Sbjct: 5   ILIIEDNQDVSRMLSEFLTESGYQPEAAFSGTDGLIKLREKSYDLVLLDLMLPYK--SGD 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I IS    + T +D    G DD + KP    E+ ARV +  RR   
Sbjct: 63  QVLRELRGFSDIPVIVISAKDMVGTKIDLLKLGADDYITKPFDLGEVEARVLSNLRRQSS 122

Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  + +T   R     +D +    +G+   L  +E  IL+ LM +  K   K  ++  ++
Sbjct: 123 SKVKEQTLQYRDLILSKDAKSVLLEGQDLELTAKEYAILQLLMEHPKKVYTKANLYETVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              +   ++N V++HIS LR KL+        +++   +GY +
Sbjct: 183 -EDEYLGDDNAVKTHISNLRNKLKKASPLEQYIETVWGIGYRM 224


>gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
 gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 96/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +  +  +    +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGIEAVEMFKAHPDSYDIVTLDLNLPRKDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR +
Sbjct: 64  EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSR 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170
           +  +   +  ++     +  ++  +   +            +E  +L  +     +  ++
Sbjct: 124 IEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 221

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G S+      E    L  + + D+  ++  L       +
Sbjct: 4   ILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVL--PKMDGI 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + I +    +P++ ++   ++Q T++    G +D   K     E L     I+ R  
Sbjct: 62  DVCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDY-IKKPFSFEELLERIKIHFRNS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G I + S   + +++     L  RE  +LE+L+ N+G    + +I   ++G+
Sbjct: 121 IEQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +  V++  I+ +RKKL        + + R +GY
Sbjct: 181 -NFEYDTGVIDVFINAIRKKLNLDKDNGYIKTVRGVGY 217


>gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E              A  D+  ++           
Sbjct: 4   LLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAAYDLIIMDIM--MPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
              + IR  +  P+I +S        +  F+ G+DD V KP   +E++ R          
Sbjct: 62  SAVKEIRKDASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKRYHG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +      +++    R   +  +   +  +E  +L YL+ N G  + + Q+   
Sbjct: 122 DQNTKKKDIYTYEGLKIDFTARKVFIDDKEQEMSPKEYVLLFYLVRNEGIALTREQLIHD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L++      + + R +GY  +
Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLQDYS--RLIVTLRGVGYRFE 223


>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++        +G  +   ++         S   DV  ++           +
Sbjct: 7   LVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVM--MPDMDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           + + +R  + VP++ ++    ++  +     G DD V KP+   E++AR+       +  
Sbjct: 65  VCKKMREIAPVPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRSSHQ 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V   +     + ++ + R   V  E   L ++E  IL+ L  +  +   +  I   
Sbjct: 125 AHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAIVER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           ++G  D   E  V+++HI  +R+KL+      +P+ +   +GY  D
Sbjct: 185 LWGN-DFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGYKWD 229


>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++   +      +      D+  ++  L   G    
Sbjct: 3   ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+ R +RA   +P+I ++    +   +   + G DD + KP    E++ R+   + R + 
Sbjct: 61  EIMRALRARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++    R    +G   PL  +E  +L  L+  +G+ +++TQI S ++ +
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+ +      + + R +GY+ 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTF 219


>gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D     F ++G S++                 DV  ++  L       L
Sbjct: 3   ILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRML--PELDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA     P I ++    ++  +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +             +    R+    G    L  RE  +LE+L+  +G+   +T +   ++
Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIH-FDPGTNVVETHISRLRAKVDKPFDHELIRTVRGAGYRID 222


>gi|257467880|ref|ZP_05631976.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317062169|ref|ZP_07926654.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC
           49185]
 gi|313687845|gb|EFS24680.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC
           49185]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 80/225 (35%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++        +G  ++  +       L    + D+  ++  L    G+  
Sbjct: 3   ILVVEDDKEIQELITYFLTKEGYEVDRASDGLEGLKLLKENKNDLVVLDLMLPNLDGKNF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYR 117
            ++ R I +    P+I +    +    +                      +  +      
Sbjct: 63  TKIVRDISSEYGEPVIIMLTAKTEIEDVLDGLEIGADDYMKKPFDPRELVLRIKKFLKTT 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ N +     I +          GE   L ++E  +L  L+ NR   + + +I   +
Sbjct: 123 DREIKNEKYRFKDIEIDESRHMVTANGEEVELSKKEYDLLLLLIKNRDLVITRERILDKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +    +  V+ +ISKLR K+    G   + + + +GY ++ 
Sbjct: 183 W-NSNYYTGDRTVDVYISKLRDKIPELSG--CIKTVKGVGYKLEE 224


>gi|210611403|ref|ZP_03288897.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787]
 gi|210151995|gb|EEA83002.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787]
          Length = 217

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HIEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKLR     D + + R +GY ++
Sbjct: 180 EEPPYDRVIDVYIKELRKKLRL----DCITTIRNVGYKLE 215


>gi|163942574|ref|YP_001647458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229135685|ref|ZP_04264462.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163864771|gb|ABY45830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228647783|gb|EEL03841.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 231

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYDAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 226


>gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 236

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  +              + + D+  I   ++       E
Sbjct: 11  LIVDDEQDIRTLLNIYLKRLGYDVVEAADGVEAVETVRADK-DIDLIVMDIMMPKLSGTE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IR  S +P++ ++         + +D G DD + KP    E   +V A+ RR KV 
Sbjct: 70  ACQQIREFSSIPVLFLTAKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALIRRYKVY 129

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G I + S  R     GEV  L  +E  +L +L+ +RGK  +   ++ 
Sbjct: 130 RGKSETDPKNISVGNINIDSFKRIVIKNGEVIKLTDKEYALLFFLVEHRGKPWSLEALYE 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+         N V  HI +LR+K+ +     + + +    GY +D
Sbjct: 190 NIWQEKYLPSSSNTVMVHILRLRQKIEDNSAQPEIIRTIYGKGYQVD 236


>gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  L+ +G        G +++ F   +       SA  D   ++  L    G  V
Sbjct: 3   ILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKTGLEAAQSAPYDAVVLDLTLPKMDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R       VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 63  LQAWRKNGQ--DVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   +   ++   + R   +  +   L  RE ++LE  M N+ + + +  I   +Y 
Sbjct: 121 GHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D  V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 NWDNEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
 gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ +IIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RR   
Sbjct: 62  EVCKIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSA 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN   + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+   I
Sbjct: 122 DNSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|254253958|ref|ZP_04947275.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898603|gb|EAY70446.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 393

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 166 LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 223

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 224 VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 283

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 284 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 342

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 343 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLE 382


>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 243

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + +        +G  +   ++             DV  ++          
Sbjct: 8   LILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIM--MPVMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R +R  S VP++ ++     +  +   + G DD + KP  HRE+++R+ A+ RR  
Sbjct: 66  FETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHY 125

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        +++    R+  V GE   L   E R+L +L+ N G  +   Q+ S
Sbjct: 126 TPPPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G      E + +  +++ LR+K+  +      + ++R +GY  
Sbjct: 186 KVWGPEYRD-ETHYLRLYVTYLRQKIEEDPANPKYILTERGIGYRF 230


>gi|28868517|ref|NP_791136.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213968347|ref|ZP_03396491.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383478|ref|ZP_07231896.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302129901|ref|ZP_07255891.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28851755|gb|AAO54831.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926985|gb|EEB60536.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|331015193|gb|EGH95249.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 225

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
 gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
          Length = 247

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 81/225 (36%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D         G  +      +           D+  ++  L        E
Sbjct: 7   LIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKTPDLVILDLML--PVVDGHE 64

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           + R +RA      + ++ ++        L  F  G DD V KP   +     I A V   
Sbjct: 65  VCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKALVRRK 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++   +  I +          G    L R E R+LE L    G+   ++++  
Sbjct: 125 RGADNSLDDVIASQGITIDRRRHRATASGRPLQLTRSEFRLLETLTRQPGRVFERSELID 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A  G  D  V E  ++ HI  LR+K+ +    + +++ R +GY  
Sbjct: 185 AALGE-DTVVMERTIDVHIRALRRKMAD--EAELIETVRGVGYRF 226


>gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222


>gi|297625346|ref|YP_003687109.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921111|emb|CBL55658.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 239

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F  +G   E                  V  ++  L       +
Sbjct: 14  ILIVEDEHSLATVMAGYFTRNGYRAEVVGDGLEAVAAARRLDPSVVILDLGL--PSLDGV 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S   ++ ++        L     G DD + KP   R ++ARV A+ RR + 
Sbjct: 72  EVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRS 131

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +  P+R     +    R+ ++      L R E  +L +L  N  + +++ ++  A
Sbjct: 132 AITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEA 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G+   + ++ +V++HI  LRKKL +       +++ R +GY +
Sbjct: 192 VWGVG-WSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRM 235


>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 236

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   S         S + D   ++      G    E
Sbjct: 12  LVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVM--MPGMDGYE 69

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++  ++  +         D  +    G+V  L   E  +L YLM N    ++K++I + 
Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKV-DTQEPALIQTVRGVGYVL 231


>gi|260587106|ref|ZP_05853019.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|260542596|gb|EEX23165.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
          Length = 234

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  L++D   +++  +      G+  EGF               D+  ++  L    G +
Sbjct: 9   MIYLVEDDESIRELLVYTLNGQGLVAEGFAYPSDFWHAMEKKIPDLVLLDIMLPEEDGLE 68

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
           +L+  R  +    +P+  ++   S    +   D G DD + KP    E+++RV       
Sbjct: 69  ILQKLRKKKETKNIPIAMLTAKGSEYDVVKGLDGGADDYIPKPFRMMELVSRVKALLRRG 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +     +     G + V       +V+GE   L  +E  +L   ++N G   ++ Q+  
Sbjct: 129 GQEQPQDDEEYVLGELYVSKKRHLVKVKGEEVTLTMKEFELLLLFLSNPGIVFSRAQLLD 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +    E   V+ HI  LR+KL+       +++ R +GY 
Sbjct: 189 KIWG-YQFDGESRTVDVHIRTLRQKLKEAG--RYIETVRGIGYK 229


>gi|225412440|ref|ZP_03761629.1| hypothetical protein CLOSTASPAR_05663 [Clostridium asparagiforme
           DSM 15981]
 gi|225042038|gb|EEG52284.1| hypothetical protein CLOSTASPAR_05663 [Clostridium asparagiforme
           DSM 15981]
          Length = 267

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGE 58
            ++++D  ++ D         G              L         D++ ++  L   G 
Sbjct: 48  ILVVEDERIISDLICMNLEAAGYETRAVYDGNETAGLLREQGQEAADLALVDIML--PGM 105

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L   +     +P+I ++    + + +     G +D + KP    E+L R+  +  R
Sbjct: 106 DGFALM-ELFQGKHIPVIYLTAKADVTSKVRGLKLGAEDYIVKPFEVLELLVRMEKVLER 164

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V  +       G    L   E  +L   + NR   + + ++   ++
Sbjct: 165 TGKMKPELCYGDLVVDLNMHRVWEGGAEVDLKPMEFGLLTVFLKNRNVVLGRDRLLDLVW 224

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D   E   V+ H++KLRKKL++      + +    GY  +
Sbjct: 225 G-SDFYGETRTVDVHVAKLRKKLKSAGA---IKTIPKAGYMFE 263


>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 270

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +                R D   ++  L       L
Sbjct: 45  LLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVML--PDMDGL 102

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIY 116
            +  R+ R   +VP++ ++   +++  +    +G DD V KP    E++ R    +    
Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + +  +  +    G+   L   E  +L  LM +  + ++K QI   
Sbjct: 163 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 222

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+K+ +      + ++R  GY +
Sbjct: 223 VWS-YDFGGQANVVEIYISYLRRKI-DAGRAPMIHTRRGAGYLL 264


>gi|332359038|gb|EGJ36859.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 238

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHADGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++           L    R D+  ++          +
Sbjct: 6   ILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVM--MPEMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E    +R  S +P++ ++     +  +   D G DD + KP +  E+ AR+ A       
Sbjct: 64  EACTKLREFSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRRVPP 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 A  G I++    R+  V+GEV  L   E ++L  L    GK VA   +  A++G
Sbjct: 124 VYRPLHAGEGQIQIDQQKREVLVRGEVVDLTPTEYQLLLILTEQAGKVVAHDTLLRAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + + + + ++ +I  LR+K+  +      + +   +GY +
Sbjct: 184 Q-EYSRDNDYLKVYIWHLRRKIEQDPRNPSLLLTDWGVGYRL 224


>gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 232

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A          G+ G +++  ++     +L S     V  ++  +    G   
Sbjct: 5   ILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMDGMAT 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           L+  R   A  + P+I +S   + +  ++   SG DD + KP    E+LARV        
Sbjct: 65  LKALRA--AGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLRRGG 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +    R  +       L  RE R+LE+ + +  + V +T +   +
Sbjct: 123 SGSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF----DPVDSKRFLGYSI 220
           +  +      NV++ H+S+LR+KL            + + R +GY +
Sbjct: 183 WD-YHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRL 228


>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         D+G  +   +              ++S +   ++      L
Sbjct: 4   ILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKI-EESCEISLMILDIMMPKMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R +R   + P+I +S       TL   + G DD + KP             +     
Sbjct: 63  ELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREKR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++   +       +++ +  +         L  RE ++ +Y + N G+ +++ QI
Sbjct: 123 HQMNAIESLQDVLPFDHFKLYPNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F AI+G  +   +   V  +I  LR+KL        + +   +GY +
Sbjct: 183 FDAIWG--ENYGDIGTVAVNIKNLRQKL--DPDNQYIKTIWGVGYKL 225


>gi|226308089|ref|YP_002768049.1| two-component response regulator CseB [Rhodococcus erythropolis
           PR4]
 gi|226187206|dbj|BAH35310.1| putative two-component response regulator CseB [Rhodococcus
           erythropolis PR4]
          Length = 225

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D A++++        +G  +   +       L   A+ D++ ++  L       
Sbjct: 5   LILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDLAVDAKPDIAVLDVML--PDLNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
           + L R IR    VP+I +S        +   ++G DD V KP         I + +  + 
Sbjct: 63  ISLCRRIREELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVE 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + +  +       G    L   E ++L  +++   K  +++++ S 
Sbjct: 123 SHSGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLIMVSVPRKVWSRSELLSD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   +  +V+ HI +LR K+    G + + + R  GY++D
Sbjct: 183 VWD-YDWGGDTRIVDVHIQRLRTKI----GSEQIRTVRGFGYTMD 222


>gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
 gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +      +   +G  ++     +       ++  D+  ++          +
Sbjct: 3   ILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWM--MPAMDGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q P++ ++   +++  +   D+G DD + KP    E++AR+ A+ RR K
Sbjct: 61  ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120

Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           +    +       G+   L  RE  +L+ L+ N+G+ + +  I   ++
Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           GL D  V +N ++++I  LRKK+        + + R +GY+++ 
Sbjct: 181 GL-DADVTDNTLDAYIRLLRKKIEPPGAAKLIHNIRGVGYTLEE 223


>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          +  + G  +                  D+  ++           
Sbjct: 3   ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVM--MPKTNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                              E +       +  L   E R+L YLM N G+ +  +QI S 
Sbjct: 121 DMLNPSARLSLGDLTLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNAGRVLNTSQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+  +      V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +    DG ++   +              DV  ++  L   G   +E
Sbjct: 7   LVVEDEPELARLVGSYLERDGFAVTIVHDGLEAVARSREVDPDVVVLDLGL--PGLDGVE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++       TL     G DD + KP   RE++ARV A+ RR +  
Sbjct: 65  VCRRLRTFSDGYVVMLTARSDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRPL 124

Query: 123 NNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +           G + +   GRD  ++    PL R E  +L  L    G   ++ Q+  
Sbjct: 125 GHMDADAGEALSFGDLTIELAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLID 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           A++G      +E++V+ H+  LR KL +       V + R +GY +
Sbjct: 185 AVWG-PAWVGDEHLVDVHVGHLRHKLGDSAAEGRYVRTVRGIGYRM 229


>gi|329907282|ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547047|gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 242

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G      ++      +  +AR D+  ++  L   GE  L
Sbjct: 7   ILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTL--PGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I ++        +   + G DD + KP   RE+ AR+ ++ RR   
Sbjct: 65  TLCRNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTNA 124

Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                          G V  L   E R+L+  + +  + + + Q
Sbjct: 125 LPPNMALSEAHSMLFDTWRLDLMARHLVMEDGTVVALSGAEFRLLKVFLEHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +     G  D    +  V+  IS+LR+KL +       + + R  GY +
Sbjct: 185 LLELTRGR-DADPFDRSVDIQISRLRQKLGDDARTPRIIKTVRNEGYVL 232


>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++     F  DG  +      +    L +    ++S +   ++        
Sbjct: 5   LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR +S VP+I ++       TL  F+ G DD V KP           R+     + 
Sbjct: 65  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL  LM ++ + +++ Q+ + I+G
Sbjct: 125 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITNIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 224


>gi|226310130|ref|YP_002770024.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093078|dbj|BAH41520.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 232

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G         +    + + +R D+  ++  L        
Sbjct: 4   IMIVEDDPKINQLLQEQLEKYGFQTVNVEHFDRVMEVFTQSRPDLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +R  S  P++ IS   S    +   ++G DD + KP  +  +LA++ +  RR   
Sbjct: 62  YWCRQMRQESNCPILFISARESKMDQVMALENGADDYITKPFDYDVVLAKIRSQLRRAYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E            F +  +  +      L ++E  +LE LM    + V++ ++  
Sbjct: 122 QYAPQEGERTVEVAGLKLFLERMELSMYETKIELSKKEALLLEALMNQHPRVVSRERLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   ++ V+EN +  +I+++R KL++      V++ R  GY +
Sbjct: 182 KLWD--EQFVDENTLNVYITRVRSKLKDLGLEGAVETVRGSGYRL 224


>gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D    ++       + G +++          +  S   D+  ++  L    G KV
Sbjct: 3   LLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPYLDGMKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   +       +P++ +S   S++  +D   +G DD + KP    E++ARV  I  R +
Sbjct: 63  LSAIKATLE--HLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  T                       L  +E +++++ + +  + V++ ++F +I
Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H++ LR+KL      D + + R  GY +
Sbjct: 181 WS-YHFDPKTNVIDVHVANLRRKLEEAGCRDLLHTVRGAGYVL 222


>gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 231

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D A +       F  +   +    +      L  +   D+  ++  L G  G  +
Sbjct: 5   ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLSI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
               +     S +P++ ++        +   + G DD + KP + +     I A +    
Sbjct: 65  NRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRTE 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R     + +     +      +  L  +E  +L  L+ N G+ + +  +   
Sbjct: 125 QEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLDL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D    +  V+ HI +LRKKL      D V + + +GY  
Sbjct: 185 VWGA-DYEGTDRTVDVHIRRLRKKLGAY--QDRVQTVKQIGYKF 225


>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
 gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
          Length = 219

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G   +     E           ++  ++  L       +
Sbjct: 5   ILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLML--PRINGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+  
Sbjct: 63  EVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMNF 122

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +++         +     L   E  +L  L+ N G  V++ +I   ++G
Sbjct: 123 QKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  NVVE +I  LR K+    G   +++ R +GY +
Sbjct: 183 -YDEDVSTNVVEVYIRYLRNKI---PGIK-IETVRGVGYRL 218


>gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
 gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
          Length = 217

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LIDD   + +         G  +    +        ++ R  +  ++  +    G + 
Sbjct: 5   ILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAHRPHLILLDVMMPTMDGIET 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R   A  +  ++ +S     +  L  F +G DD ++KPI  + +++R+    + + 
Sbjct: 65  CRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRI----QAIL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +  +       GE   LPR+E  +L  L ++ GK  ++ +I+S I+G 
Sbjct: 121 KRVAADKPASLVIDRERHLVIRNGERIELPRKEFALLALLASSPGKLFSREEIYSRIWGD 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               V +  ++ H+ K+R+K+ +      + + + +GY  +
Sbjct: 181 S-VVVGDRTIDVHVRKIRQKIGD----GHISTVKGMGYKYE 216


>gi|87119735|ref|ZP_01075632.1| two-component response regulator [Marinomonas sp. MED121]
 gi|86165211|gb|EAQ66479.1| two-component response regulator [Marinomonas sp. MED121]
          Length = 229

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +    +     D   ++     +        ++ D+  ++  L   G+  
Sbjct: 5   LIYIVEDEIKIAQILVDYLVKDNYDVKVLYRGDEAVERILESKPDLVILDVML--PGKSG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114
           + + + +R HS VP++ ++        L     G DD V KP   RE++ARV        
Sbjct: 63  INICKELREHSNVPIMMLTARIDEMDRLVGLKVGADDYVCKPFLPREVVARVNAILRRVN 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++      I +  +       G+   L   E R+L+ +++   +  ++  + 
Sbjct: 123 RIDDEEEKSSELVYRSITLDLECFKCHANGQYVELTPVEYRLLQIMVSRPKRVFSRESLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              Y   D  V +  ++SH+  LRKKL       + + S   +GY ++
Sbjct: 183 QKCY-KDDRIVSDRTIDSHVKNLRKKLAAADPSEEIIHSIYGVGYKVE 229


>gi|325690690|gb|EGD32691.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 238

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMVKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G       S    E   +S+R D+  ++  L       L+
Sbjct: 8   LVVDDDQEIRKLLARYLLSQGFRTTVAASGREMEECLASSRFDMVVLDLML--PDASGLD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAI 115
           L R +RA S++P+I ++        +   + G DD + KP + RE++        R    
Sbjct: 66  LCRALRARSRLPIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRATER 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G        +     G    L   E  +L   +   G+ +++ Q+  
Sbjct: 126 EEPAAPGAIYRFAGFTADQGTRQVTSETGAEVALTAAEFDLLVAFLERPGRILSRDQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G  +    +  ++  +S+LR+KL +   F  + ++R  GY +
Sbjct: 186 ITQGR-EAGPFDRSIDVLVSRLRRKLGDAGSFQILKTQRNGGYQL 229


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +          +G  +   +       L  S    +  ++  L       +E
Sbjct: 6   LIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVML--PSLNGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + R IRA  Q P+I I+   S+   +   D+G DD + KP    E+    R         
Sbjct: 64  VCRRIRAVKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHAP 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + V  D R  +   +   L +RE  +L   + N    + +  +   ++G 
Sbjct: 124 AEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD  VE NVV+ ++  LR KL        + + R  GY +
Sbjct: 183 FDTEVETNVVDVYVRYLRHKLDETDKERYIQTVRGAGYVM 222


>gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       +   ++           +       +  ++            
Sbjct: 5   LVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVM--MPRLDGTS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +S VP+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 63  ATIKIRENSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRRYTSY 122

Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +N   T    +         + +   V GE   +   E +IL  LM +  +  +  +I+ 
Sbjct: 123 SNVTTTKEDVIKIGGIELRDESKAVFVDGEAVRITPLEYKILYLLMNHPNRVFSIEEIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++       +   V  HI ++R+K+  N      +     +GY  +
Sbjct: 183 KVWNEPAYNPD--TVTVHIRRIREKIEINPGEPKYLKVVWGVGYKFE 227


>gi|323466878|gb|ADX70565.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus helveticus H10]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++ + +RA S   P+I ++   S    +     G D+ V KP             H R +
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +                                    V  L  +E  +L  +     +  
Sbjct: 125 MEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQPVVDLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +++        +G  +                R DV  ++      G   L+
Sbjct: 6   LLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVM--MPGIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+         
Sbjct: 64  VCRVLRAEGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 123

Query: 114 --------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                   A            E   IR+    R          L R E  +LE L+ N G
Sbjct: 124 VAAGSAPAAEEAPKAAPGRFLEAAGIRMDPQARRAWRGERELELTRTEFELLELLVRNAG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  + I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 184 IVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPLLIHTVRGVGYVL 237


>gi|238927184|ref|ZP_04658944.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|304437129|ref|ZP_07397091.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|238884966|gb|EEQ48604.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|304369888|gb|EFM23551.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 230

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +        DG +++     +  + L  +   D+  ++  L   G    
Sbjct: 4   ILLVEDDAAIAELERDYLEADGFAVDISADGDAGKRLAMTGDYDLLLLDVML--PGADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R + 
Sbjct: 62  AICRDVRKAYDIPILMVSARLEDVDKIRALGLGADDYIIKPFSPSELAARVKAHLARYER 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +    R   + G    L  RE  +L +L  +     +K  ++ 
Sbjct: 122 LKGSAGDAAVLRFGALEIQPQTRRVFLGGNEVILAAREFDLLLFLAQHPQVVFSKETLYD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   D       V  HI++LR+K+  +      + +    GY  +
Sbjct: 182 RVW-ELDAMGSTATVSVHINRLREKMERDPAHPQWLQTVWGAGYRFN 227


>gi|218513473|ref|ZP_03510313.1| two-component response regulator protein [Rhizobium etli 8C-3]
          Length = 241

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++      F D+G ++                  D   ++  L G G   L
Sbjct: 10  LLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQNFDAVLLDLVLPG-GTDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IRA S VP++ ++    +   +   + G DD + KP H RE+ AR+ +I RR + 
Sbjct: 69  DLAREIRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRRRQP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
               AE G   +                        L   E  +L   + + G+ + +  
Sbjct: 129 PARNAEPGGEEIIGFEDWKLNLSRRQLLDPEGTEIELTTGEFDMLTTFVRHAGRVLTRDV 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   EA +   +++ I +LR+K+  +      + + R +GY  
Sbjct: 189 LMDLTRGRNLEAFD-RTIDAQIVRLRRKIETDPKKPQFIKAVRGVGYVF 236


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++  G    F  +G  ++  N  +    L  + +  +  ++  L        
Sbjct: 7   ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLML--PKVNGY 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R +R    ++P+I ++        +     G DD V KP   +E+LARV A   R+ 
Sbjct: 65  EICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQR 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +      G  R  +  R     G+  PL  +E  +L +L+ N G+ +++ +I S ++G
Sbjct: 125 KQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +D  V    ++  ++ LR K+  +      + + R  GY  +
Sbjct: 185 -YDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226


>gi|261409902|ref|YP_003246143.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286365|gb|ACX68336.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   +       ++           + +  + D+  ++  L        
Sbjct: 4   ILIVEDDERIADKLRSAISKYDFNVRIIEDFNRVMDIFAETKPDLVLLDVNL--PKYDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS   S    +   ++G DD + KP     +LA+V +  RR   
Sbjct: 62  YWCRQIRTQSHCPIIFISARDSGMDQIMALENGADDYITKPFDMELVLAKVRSHLRRAVG 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +     V       + +            L ++E  +L  LM   G+ V++ ++ 
Sbjct: 122 AYASGQEEEPTVESAGLLLYPERLLVTYGDRSAELTQKEAALLTMLMEKDGRVVSRERLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      +++N +  +I+++R+KLR     D +++ R  GY  
Sbjct: 182 DLMW-EDQHFIDDNTLNVYITRVRRKLRELGAGDLIETVRGAGYRF 226


>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG S+    + +    L  +   D+  ++  L        
Sbjct: 5   IIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLE--DMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
            + + IR     P+I ++        +     G DD + KP +          ++     
Sbjct: 63  SVCKKIREKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +   +   + +        +  +   L   E  I+ YL  N+GK V+  ++
Sbjct: 123 YNKTEKIKDDETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  I+         N V +HI ++R K+ +       + +   +GY I+
Sbjct: 183 FENIWKEKYLD-NNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGYEIE 230


>gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   +S        +  + DV  ++  L       ++
Sbjct: 5   LVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGL--PDISGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        ++  D+G DD V KP    E      A V      
Sbjct: 63  VLAGLRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V     ET    V    +     G    L   E  +LE L+ NRGK V + ++   ++
Sbjct: 123 SEVEQPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           G    A E + +  ++++LR+KL +       + ++  +GY  + 
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSNPKHLLTESGMGYRFEV 226


>gi|253989244|ref|YP_003040600.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780694|emb|CAQ83856.1| transcriptional regulatory protein baer [Photorhabdus asymbiotica]
          Length = 234

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I          +     +           D+  ++  L   G   L 
Sbjct: 11  LIVEDEPKLGQLLIDYLNAADYKTQWLLRGDEVVPYVQQHNPDIILLDLML--PGCDGLS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++        L   + G DD + KP   REI+ARV  I RR    
Sbjct: 69  VCREIRCFSDIPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCYRP 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++         + ++  L   E R+L+ +    G+ +++ Q+ + +Y    
Sbjct: 129 QDIVKQSDLQIDEACFQARYRDKILDLTPVEFRLLKTMAIRPGRVLSRDQLLNNLYDDH- 187

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  ++SHI  LR+KL         + S   LGY  +
Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDSNKTFIRSIYGLGYRWE 227


>gi|94972216|ref|YP_594256.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554267|gb|ABF44182.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 223

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       +DG +++   S E    L      D+  ++  L    +   
Sbjct: 3   LLIVEDDPHIAELLRDGLREDGYAVDHAASAEEGFALAGLFPHDLLILDVMLPEGIDAGY 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R      P++ ++   +++  +   ++G DD + KP   RE+ ARV A+ RR  
Sbjct: 63  RLGQRLREVGNLAPILYLTARGTVEDRVTGLEAGGDDYLIKPFAFRELRARVRALLRRAG 122

Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +          +    ++    G    L R+E  +LE L  + G+   + +I   ++
Sbjct: 123 GYAHNTLPLSGGFMLDLTAKEVYRSGTRCDLTRKEYALLELLAHHPGRTFTRDEIIERLW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +E VE  V++ ++S +R+K         + + R +GY +
Sbjct: 183 D-GEEGVEPKVIDVYVSSIRRK----TEEGLIGTVRGVGYRL 219


>gi|330831698|ref|YP_004394650.1| beta-lactamase response regulator [Aeromonas veronii B565]
 gi|328806834|gb|AEB52033.1| Beta-lactamase response regulator [Aeromonas veronii B565]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +         R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFMLGQQLLTRLEQTRPDFLILDVGL--PDISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +RA + +PL+ ++        L   + G DD V KP   RE+      +  R  
Sbjct: 63  FELCKQVRALTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-CARVRVILRRS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  +  + +  +      +G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 122 QPVAPQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMLAPGRVYSRQQLMDLVWQD 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 182 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 222


>gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|301383835|ref|ZP_07232253.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato Max13]
 gi|302133400|ref|ZP_07259390.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331016289|gb|EGH96345.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 267

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGSQMRQALTDETFDVVVLDLML--PGEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +    S      L  S    ++ ++  L        
Sbjct: 5   ILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSENPVLAVLDLML--PDLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R + A + +P+I ++   S +  L  F  G DD + KP   RE++ RV A+ +R   
Sbjct: 63  AVCRELTASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVLKRAGK 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               A+            +       +G+   L   E ++L  L +   K   + ++   
Sbjct: 123 VAGAADRLSFNGGTLILDNASFSVICKGQPVKLTVVEFKLLFALASTPQKTFTREELIDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + G +     E  ++SHI  +R KL +       V +   LGY  
Sbjct: 183 VMG-YQFEGYERNIDSHIKNIRHKLSDAPHSPVFVLTIYGLGYRF 226


>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
 gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++             +      E    +    +  +S I   ++       
Sbjct: 6   IMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDK-SISLIICDVMMPKINGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           ++ + IR +SQVP+I ++        L+ FD GVD+ +                      
Sbjct: 65  DVVKEIRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSNN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G I +     +  + G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 LSTGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL  K   + + +   +GY  + +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEVD 225


>gi|182676924|ref|YP_001831071.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636554|gb|ACB97327.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     L  ++G  +E   +    +   +  R D+  ++  L   GE  L
Sbjct: 4   LLIVEDDPDIRQLIGELMRNEGFHIEEAENAAAMDATMTRIRPDLLILDLML--PGEDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR HS +P++ ++        +   + G DD + KP   RE+LARV A+ RR   
Sbjct: 62  SICRRIRTHSIMPILMLTAKSDEIDRVVGLEMGADDYLVKPFGPRELLARVRALLRRAAA 121

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    +               +  + +G        E  +L   +    + + + QI +
Sbjct: 122 LSPVMSSRRFAFDRFIIDLDARQVTDDKGLALTFTSAEFDLLACFVQRPRRVLTRDQILN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            I G       +  V+  IS++R+KL     G + + + R  GY  
Sbjct: 182 QIRGRI-TDPFDRTVDMLISRIRRKLDAACPGSNLISTIRNGGYLF 226


>gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli
           E24377A]
 gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1]
 gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str.
           REL606]
 gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9]
 gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9]
 gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A]
 gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI1]
 gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)]
 gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli B str. REL606]
 gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BL21(DE3)]
 gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli W]
 gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli EC4100B]
 gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120]
 gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489]
 gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|320332927|ref|YP_004169638.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754216|gb|ADV65973.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    DG ++         +     A  D++ ++  L   G   L
Sbjct: 4   ILIVDDDPAILEILGAYLRADGHAVLEAQDGHAGQARLPEA--DLALLDWML--PGVSGL 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R  R  H   PL+ ++     +  L   + G DD V KP   RE++ARV A+ RR +
Sbjct: 60  ELARAQRRLHPDFPLLLLTARGEEEDRLLGLEVGADDYVTKPFSPREVVARVRALLRRAR 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +  +  G   +    R   + G+   L + E  +L  L  + G   ++ ++   ++G 
Sbjct: 120 IHDRVSSGGL-ELDERQRTAHLDGQALALSKLEFDLLLTLARHPGFVWSRDRLLERVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D    E VV+ H++ LR+KL         + + R +GY  
Sbjct: 178 GDFPGVERVVDVHMAGLRRKLGEAPEQPRFIRTVRGVGYCF 218


>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
 gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
          Length = 247

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G ++      +           ++  ++  L   GE  L
Sbjct: 11  ILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIML--PGEDGL 68

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
            + R +RA + + P+I ++        +   + G DD + KP + R              
Sbjct: 69  SICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRRNT 128

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +     GP ++    R      E  P+   E  IL+    +  + +++
Sbjct: 129 VEFEHPGAPSTEDLVVNFGPFKLNLSTRTLTKNDEPVPMTTGEFAILKVFARHPREPLSR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++     G  +    +  ++  IS++RK +  N      + +   LGY  
Sbjct: 189 YKLMELARGK-EYENFDRSLDVQISRVRKLIEVNPSYPQFIQTVWGLGYVF 238


>gi|229014045|ref|ZP_04171169.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229062531|ref|ZP_04199844.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716814|gb|EEL68505.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228747301|gb|EEL97180.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 231

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYDAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|157372130|ref|YP_001480119.1| DNA-binding response regulator CreB [Serratia proteamaculans 568]
 gi|157323894|gb|ABV42991.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 231

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I     +G  +  F   E      +     ++ ++  L        EL
Sbjct: 7   LVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALAILDVGL--PDINGFEL 64

Query: 64  PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + + S   P++ ++        L   + G DD V KP   RE+ ARV  I RRL+  
Sbjct: 65  CRRLLSQSADLPILFLTARSDELDRLIGLEIGADDYVAKPFSPREVSARVRTILRRLQKQ 124

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + GP  +           +   L R E  +L+ L+   G+  ++ Q+  ++
Sbjct: 125 QRLQQPALYQFGPFSLDEQAAAIHYHQQPLLLTRYEFLLLKTLLLAPGRVFSRQQLMESV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           + L +E+++   V++HI  LR KLR       P+ + R LGY
Sbjct: 185 WALAEESLD-RTVDTHIKTLRAKLRAIDPAEPPIHTHRGLGY 225


>gi|75759288|ref|ZP_00739387.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493237|gb|EAO56354.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 13  ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 71  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 130

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 131 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 191 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 235


>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
 gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + ++   +      G       + E           D+      ++       E
Sbjct: 5   LVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLR-RNPDIKVALLDIMLPDMDGFE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R IRA  SQ+ +I ++        +    +G DD V KP    E+ AR+ A+YRR   
Sbjct: 64  VCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRTGG 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K S+      P  + +  +  E  G+   L   E  I++  M   G+ +++ +I   +
Sbjct: 124 AEKESSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEILDTV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           +G  D   E  +V+ +I +LR K+ +       + +    GY 
Sbjct: 184 WGR-DYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGYK 225


>gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 246

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   ++D         G  ++        + L    + D+  ++  L    G  V
Sbjct: 4   ILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ +S     Q  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAIWFEDTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 246

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D   ++D         G  +         + L    + D+  ++  L    G  V
Sbjct: 4   ILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ +S     +  ++ F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAIWFEQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G +D   +   +  HI  LR KL         + +    GY ++
Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 243

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD A +++    +   +G  ++             +   +   +   ++       
Sbjct: 12  ILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP++ ++     +  +  F  G +D + KP    E +ARV A+ RR   
Sbjct: 72  DVCKHLRQTSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLRRWHQ 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA-----------NRGKRVAK 170
                 T   +         +  +       + ++   L             +RG+ +  
Sbjct: 132 YGASGPTATSQQEQAICIGNITIDPLTRTATKAKVAIPLTDLEYELLYLLASHRGQTLTA 191

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +I+ +I+         N +  HI  LRKKL N       + +    GY I
Sbjct: 192 RKIYESIWDDAYLPQSSNTIMVHIRNLRKKLENDPRNPVVIQTVWGKGYRI 242


>gi|254829734|ref|ZP_05234389.1| hypothetical protein Lmon1_00195 [Listeria monocytogenes 10403S]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + ++    +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEINATFVHDGKMGYEAFFKDDYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R  +
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  +  +  +P++ ++        L   + G DD + KP   RE+ ARV       +
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +      +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 W-IDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|86361259|ref|YP_473146.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86285361|gb|ABC94419.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++      F D+G ++                  D   ++  L G G   L
Sbjct: 10  LLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQNFDAVLLDLVLPG-GTDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IRA S VP++ ++    +   +   + G DD + KP H RE+ AR+ +I RR + 
Sbjct: 69  DLAREIRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRRRQP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
                E     +                        L   E  +L   + + G+ + +  
Sbjct: 129 PARNPEAAGEEIIGFEDWKLNLSRRQLLDPEGTEIELTTGEFDMLTTFVRHAGRVLTRDV 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   EA +   +++ I +LR+K+  +      + + R +GY  
Sbjct: 189 LMDLTRGRNLEAFD-RTIDAQIVRLRRKIETDPKKPQFIKAVRGVGYVF 236


>gi|327463016|gb|EGF09337.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV  + RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A+           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPAQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|255523798|ref|ZP_05390763.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512501|gb|EET88776.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 242

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   + D    +   +G  +++  +       +    + D+  ++  L       
Sbjct: 11  ILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGIKICEDEKPDIVVLDIML--PDIDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S  P++ +S   S    +     G DD V KP   +EI  R+ A +RR +
Sbjct: 69  IEVCKKIRQFSYCPILFLSAKNSDVDKIVGLSMGGDDYVTKPFSPKEIAFRIKAQFRRQQ 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N   +   I +         +     L  +E ++L YL  N  K V K 
Sbjct: 129 YDGIKEVSDNKNENIKISNINIDKLHSQVYKEDIEVKLTAKEYKLLLYLAENSNKIVNKE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++   ++G  D    +N +  HI  LR+KL  N    + + +   LGY +
Sbjct: 189 RLCEVVWG-DDYIGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKL 237


>gi|242372014|ref|ZP_04817588.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242350283|gb|EES41884.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 234

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++ +    F S E           D++ ++     KG    E
Sbjct: 15  LIVDDDRKILDYVATHLINEHIRTHTFLSGETALHFLEKENVDIAIVDIM--MKGMDGFE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + ++   ++P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR +++
Sbjct: 73  LCQKLKEDYELPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQIN 132

Query: 123 NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                       +       V  +   LP +E +++  L++N      +  I   I+G F
Sbjct: 133 AESELKLGNLTLNQSYMELSVDSKTVNLPNKEFQLIFLLVSNPKHIFTRDDIIEKIWG-F 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++  V+ HI +LRK+L        + + R  GY +  N
Sbjct: 192 DYEGDDRTVDVHIKRLRKRLMQLEASVSIHTVRGQGYMVSQN 233


>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G  +    + +    +  +   D++ ++  +       + 
Sbjct: 5   LVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMA--DMDGIT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S +P+I +S        +    +G DD + KP +  E++ARV A  RR K  
Sbjct: 63  LCMEIRKKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           NN+ ++  +       + +            L  +E  ILE L  N+G   +   I+  +
Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   +     NV+  HI  +R K+  +      + +   +GY  
Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGYKF 226


>gi|16803547|ref|NP_465032.1| hypothetical protein lmo1507 [Listeria monocytogenes EGD-e]
 gi|47097204|ref|ZP_00234768.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224501553|ref|ZP_03669860.1| hypothetical protein LmonFR_03382 [Listeria monocytogenes FSL
           R2-561]
 gi|254828259|ref|ZP_05232946.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254898327|ref|ZP_05258251.1| hypothetical protein LmonJ_00890 [Listeria monocytogenes J0161]
 gi|254912181|ref|ZP_05262193.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254936509|ref|ZP_05268206.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284801897|ref|YP_003413762.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578]
 gi|284995039|ref|YP_003416807.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923]
 gi|16410936|emb|CAC99585.1| lmo1507 [Listeria monocytogenes EGD-e]
 gi|47014418|gb|EAL05387.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258600647|gb|EEW13972.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258609103|gb|EEW21711.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284057459|gb|ADB68400.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578]
 gi|284060506|gb|ADB71445.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923]
 gi|293590154|gb|EFF98488.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKMGYEAFFKDDYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R  +
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +           D+  +   ++      +
Sbjct: 3   ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKL-HTDPDIKLMILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S++P++ +S        +    +G DD V KP +  EI+ARV ++ RR + 
Sbjct: 62  QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSEK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + +     + +             L   E  IL  L ++  +  +  +IF 
Sbjct: 122 DVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
            ++   +  +    V  H+S LR K+     G   +++   +GY 
Sbjct: 182 RVW-QQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +            +   NS      +      D   ++      G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVM--MPGMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++    +   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +        +         D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGETQLIHTVRGVGYVL 229


>gi|78188413|ref|YP_378751.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170612|gb|ABB27708.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 253

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       S E            +  ++  L   G   
Sbjct: 22  LLLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVML--PGMDG 79

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL R IR        P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 80  FELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILK 139

Query: 118 RLKVSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +  + +A+         V        + G+   L   E ++L  L+  +G+  ++  +
Sbjct: 140 RERRQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D+++    +++HI+++R+KL N      + + R LGY ++
Sbjct: 200 LSDVWDI-DKSISTRTIDTHITRIREKLGNYGA--LIKTVRGLGYRLE 244


>gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17]
 gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           + G ++E         +L S    D+   +  L       L
Sbjct: 5   ILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRML--PRLDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IRA     P++ +S   ++   +D   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  AMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSD 122

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +           + +    R     G++ P+  RE  +LE+L  + G+ V +T +  
Sbjct: 123 RAASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+  +      NVV+ HI +LR+KL    G   + + R  GY +
Sbjct: 183 KIWN-YHFDPGSNVVDVHIGRLRRKLEEGFGTPILHTVRGAGYRL 226


>gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++   I     +G  ++  ++ +               ++  L         
Sbjct: 6   LVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDYSCVLLDVHLPI--LNGKS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARVA 113
           +   +R     P+I +S     Q+ ++ F+ G DD V KP   RE++          + +
Sbjct: 64  ILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKRS 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             Y     + +      + +  +     V+     L  +E  +L +L  +  K   + +I
Sbjct: 124 VFYTPELYTKDVLVFPGLIIDVNSHKVIVEDTEVLLTPKEFDLLLFLAKSPDKAFRRNEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
             A++  +D   +   V++HI ++RKK           + +   +GY  D
Sbjct: 184 LRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPKVSKMIVTVWGIGYKFD 232


>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 77/224 (34%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   +     +G  +    +      L  +   D+      ++  G    E
Sbjct: 5   LILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTT-PDIDIALLDVMVPGIDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDF------FDSGVDDVVNKPIHHREILARVAAIY 116
           + R IR  ++   I        +    +       D          +  R          
Sbjct: 64  VCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVNV 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R   +    ++GP  +    +  +  G+   L   E  ++++ +      +++  +   
Sbjct: 124 QRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++G  +   +  +V+ +I +LR+K+  N    + + +    GY 
Sbjct: 184 VWGK-EYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGYK 226


>gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++     L   DG  +    + E    L   +   +  +   +    +  +
Sbjct: 5   ILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES---IGLVILDVEMPKKSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------A 113
            +   IR  S VP++ ++ Y         F +G DD + KP  + ++L RV         
Sbjct: 62  VVCSEIRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQ 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + V  +     ++G+   L   E +IL  L+ +R K  +  QI
Sbjct: 122 YHSTTQVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYKILRLLITHRKKIFSMEQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +I+    + + +N V  H+  LRKK+         + +    GY +D
Sbjct: 182 YQSIWNDSGQVIGDNAVMVHVRNLRKKIEKDSKNPVYIKTAWGKGYYVD 230


>gi|163814295|ref|ZP_02205684.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759]
 gi|158449930|gb|EDP26925.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759]
          Length = 244

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  +              +   D+  I   ++       E
Sbjct: 19  LVVDDEQDIRTLLNIYLKRLGYEVVEAADGVEAVETVRANS-DIDLIVMDIMMPKLSGTE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR  S VP++ ++         + +  G DD + KP    +   +V A+ RR +V 
Sbjct: 78  ACEQIREFSSVPVLFLTAKTKEPDQNEAYVVGGDDFLPKPFTQNDFNRKVNALIRRYRVY 137

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G I + S  R     GE+  L  +E  +L +L+ +RGK  +   ++ 
Sbjct: 138 RGKSEVDAKNITVGNISIDSFKRIVTKNGEIVKLTDKEYALLFFLVEHRGKPWSLEALYE 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+         N V  HI +LR+K+ +     + + +    GY +D
Sbjct: 198 NIWQEKYLPSSSNTVMVHILRLRQKIEDNSAQPEIIRTIYGKGYQVD 244


>gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +    D+  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           ++ + IR  + VP++ IS    L+  ++  + G DD + KP            +L R  +
Sbjct: 62  QVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +  +      QG+   L  RE  IL  LM +  K  +K  + 
Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E +I  LR KL    G + + + R LGY +
Sbjct: 182 DKLYD-FDSEVTSNTIEVYIHHLRSKL----GKNFIRTIRGLGYRL 222


>gi|146279972|ref|YP_001170130.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558213|gb|ABP72825.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +            +G S++            +    D+  I+      G   L
Sbjct: 3   ILLAEDDSQTAAYLRQGLSAEGYSVDHVPDGRDALVQATLQPYDLLVIDRM--MPGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A  + P++ ++    +   ++   +G DD + KP    E+ AR+AA+ RR  
Sbjct: 61  SLVKALRSAQVKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPA 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++    +   +      +  R     G    L  RE R+LE+LM + G+   +T +  A+
Sbjct: 121 LAETSRDVLRVGDLTLDTTRRTATRGGAEIDLQPREFRLLEHLMRSAGRVQTRTMLLEAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F      +VVE+HIS+LR K+        + + R  GY +
Sbjct: 181 WD-FHFDPGTSVVETHISRLRAKIDRPFEKPLLHTVRGAGYML 222


>gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 249

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +           +    R D   ++  L       LE
Sbjct: 27  LVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVML--PDFSGLE 84

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R    Q+P++ ++   +++  +    +G DD V KP    E+  R+ A+ RR   
Sbjct: 85  VLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +  D R+    G++ PL   E  +L YLM N  + ++K QI   +
Sbjct: 145 VTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILDRV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LRKK+        + + R  GY +
Sbjct: 205 WS-YDFGGQANIVELYISYLRKKIDADREP-MIHTMRGAGYVL 245


>gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++     F  DG  +      +    L +    ++S +   ++        
Sbjct: 5   LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR +S VP+I ++       TL  F+ G DD V KP           R+     + 
Sbjct: 65  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL  LM ++ + + + Q+ + I+G
Sbjct: 125 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLTREQLITNIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 224


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLML--PNVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR     +P+I IS   S    +   + G DD + KP   +E++ARV A++RR +
Sbjct: 65  EICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  + GE+  L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +    + + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGYKF 231


>gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 236

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +++G   L   +   +    +      +      D+  ++      G   L 
Sbjct: 7   LIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT-DLVILDIM--MPGMSGLR 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112
               IR  S VP++ ++        L    +G DD + KP  +                 
Sbjct: 64  TCEEIRRVSNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKALLRRYRVY 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G IR+     +  V G +  +   E  +L  +M + G+  +   
Sbjct: 124 MGKTGESTEKETYLERGGIRIHETFNEVWVDGVLKEMTDIEYHMLLLMMQHPGRIFSAQN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++ +I+         + +  HI KLR K+         + +    GY  D
Sbjct: 184 LYESIWEEPYFYSCNSTIMVHIRKLRVKIEADPKYPKYIRTVWGKGYKFD 233


>gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 231

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G ++   ++ +         +  +  ++          L
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVM--MPELDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  SATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    +         ++ ++  V GE+  L   E  I+ +LM N GK  +  QI+ 
Sbjct: 124 LGGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++     +  EN V  HI ++R+K+  N      +     +GY ++ 
Sbjct: 184 NVWKEPAYS-SENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230


>gi|330888178|gb|EGH20839.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 267

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 248

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G+      +      +   +R D+  ++  L   GE  L
Sbjct: 10  ILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTL--PGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S VP+I ++        +   + G DD + KP   RE+ AR+ ++ RR + 
Sbjct: 68  TLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQA 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
                    +                          L   E R+L+  + +  + + + Q
Sbjct: 128 LPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +     G  +    +  V+  IS+LR+KL +       + + R  GY +
Sbjct: 188 LLELTQGR-ESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 235


>gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
 gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVML--PDLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFAPKLIQTVRGMGYVLE 222


>gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946]
          Length = 219

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G +++   +         S +  +  ++  L        
Sbjct: 3   ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGL--PDRDGA 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R     +P++ +S   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E H+  LR+KL    G D + + R +GY ++ 
Sbjct: 181 WQD-DTSSNTLEVHMHNLRRKL----GKDRIKTVRGVGYRLEE 218


>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G         +      ++   D+  I   L+      +
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTN-PDIGLIILDLMMPEIDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +V  L   E  IL  L ++  +  +   IF 
Sbjct: 122 EVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G S+    +      +  +   DV  ++  L   G   +E
Sbjct: 16  LVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGL--PGLDGVE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREILA 110
           + R IR  S   ++ ++        +     G DD + KP               R    
Sbjct: 74  VCRQIRTFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQR 133

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +   +          G + +   GR   V G    L R E  IL+ L A      ++
Sbjct: 134 GAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFSR 193

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q+   ++ +     +E++V+ H+  +R+KL +       +D+ R +GY +
Sbjct: 194 RQLIDEVWDIA-WVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRM 243


>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMYGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|302874054|ref|YP_003842687.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689692|ref|ZP_07632138.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576911|gb|ADL50923.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + +  G      ++G  +   ++L        + + D+  ++  L        E
Sbjct: 5   LLVEDDSTLAFGIEYTLKNEGFDVILADNLAKARKAFETEKLDIVLLDVTL--PDGNGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---NKPIHHREILARVAAIYRRL 119
             R IR++S + +I ++        +   D G DD +    +       +  V     + 
Sbjct: 63  FCREIRSNSTMAIIFLTSCNDEANVVMGLDLGADDYISKPVRIKELISRINAVMRRNGKA 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  ++G I +       +  G+   L   E R+L  L+ +  + +++  I   ++ 
Sbjct: 123 VDYANIIKSGNIEINVLKGKVKKAGKEIILTAVEYRLLLTLIEHSEQILSRNTILEKLWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +  E +++N +  +I +LR+K+ +       + + R +GY  +
Sbjct: 183 IDGEFIDDNTLSVYIRRLREKIEDDASAPVHILTVRGVGYKWN 225


>gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGF 120

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 E     +  +   R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638]
 gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + +  I +   +G +++ F                ++ ++  L       
Sbjct: 5   LIWLVEDEISIAETLIYMLSQEGFAVKAFERGLPALDEAHRQAPALAILDVGL--PDISG 62

Query: 61  LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R  +  H  +P++ ++        L   + G DD V KP   RE+ ARV  I RR+
Sbjct: 63  FELCRQLLAQHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRM 122

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++    G   +          G   PL R E  +L+ L+   G+  ++ Q+   
Sbjct: 123 QKSAAPSDIVRIGQFELNEPAAHISWCGHALPLTRYEFLLLKTLLNAPGRVFSRQQLMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           ++G   ++ +   V++HI  LR KLR       P+ + R +GYS+
Sbjct: 183 VWGDEGDSFD-RTVDTHIKTLRAKLRAINADLSPISTHRGMGYSL 226


>gi|94970126|ref|YP_592174.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552176|gb|ABF42100.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  ++        E L +    D   I+  L       L
Sbjct: 13  LLVVEDDLAIQEFLKRALVEAGYQVDVAADGRTAEKLATEGIHDGLIIDLGL--PDIDGL 70

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
           +L  R     +  P++ +S   S+   +   + G DD + KP         L  +     
Sbjct: 71  DLIARTRAQGNSAPVLILSARRSVDERVRGLEQGGDDYLTKPFALSELLARLRNLLRRAS 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  + R     + +    R+ +    V  L  +E  +LEYL  N G+ V +T I   +
Sbjct: 131 PGQHESTRLRIADLELDLVRREAKRGANVLQLTPQEFALLEYLCRNTGRVVTRTMILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +       NVV+ HI +LR K+        + + R +GY +
Sbjct: 191 WKMR-IDPATNVVDVHIYRLRSKVDRDAPKALIHTIRGVGYVL 232


>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +   ++      L       +  ++          L
Sbjct: 3   ILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIM--MPKMDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +   + G DD + KP +  E++AR+ +  RR  +
Sbjct: 61  RATMKIREEKNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFTI 120

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +N   TG + +  + +   V G+   L   + +IL+ L AN G+  +  +I+ 
Sbjct: 121 LGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++     + E N V  HI K+R+K+  N      +     +GY ++ 
Sbjct: 181 KVWNETAFSPE-NTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKVEK 227


>gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  +                  D+  ++  L        
Sbjct: 4   ILVIEDDEDIQKILKNYLCGNGYGVVLAGDGVEGIHKFHEHTCDLVLLDVML--PKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
            +  +IR  S+VP++ ++     +  +   D   DD + KP   +        +L R   
Sbjct: 62  GVLELIRRESEVPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLRRANR 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++        P                  L ++E  +L  L+ N+G  + + ++ 
Sbjct: 122 DAGQEQIVYKNLRLDPAGHHVYVGQENGDITEPELTQKEFELLHVLLINKGIVLTRQKLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + ++G  D   EE +V++HI  LRKKL    G   + + R +GY ID 
Sbjct: 182 NLVWGE-DYFGEERIVDTHIKNLRKKL----GPGCISTIRGVGYRIDK 224


>gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 262

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S      +  +A   V  +   ++  GE  L
Sbjct: 17  ILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAE-MDIALAADPRVDLLVLDIMLPGEDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
            + R +   ++ P+I +S        +   + G DD V KP + RE       +L R   
Sbjct: 76  SIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQRM 135

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   + R   G   +    R   +      L   E ++L++ M    + + + QI 
Sbjct: 136 EPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQIM 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + G ++ +  +  ++  I++LR+K+  N      + +    GY  
Sbjct: 196 DYLKG-YERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLF 241


>gi|222111390|ref|YP_002553654.1| winged helix family two component heavy metal response
           transcriptional regulator [Acidovorax ebreus TPSY]
 gi|330825948|ref|YP_004389251.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|221730834|gb|ACM33654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax ebreus TPSY]
 gi|329311320|gb|AEB85735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++G  +E  ++      L      D+  ++  L   G   +
Sbjct: 3   LLIVEDEIKLAEYLRKGLSEEGYVVEVAHNGVDGLHLAMEGAYDLIVLDGML--PGIDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR       +  
Sbjct: 61  GVLAALRQSRQTPVLMLTARMRVEDRVRGLKAGADDYLVKPFAFTELVARIEVLLKRSHP 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R  E  G+   L  +E ++L  L+  +G+ +++ +I   
Sbjct: 121 LPASHEALTLAIDDLHMDLVRRRVERAGKRLNLTAKEFQLLSLLLRRQGEVLSRAEIAEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NV++  I +LR K+        + + R +GY ++
Sbjct: 181 VWDV-NFDHGTNVIDVAIRRLRAKMDTPFDRPLLHTVRGMGYVLE 224


>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 95/236 (40%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +    ++         S   D+  ++  L       L
Sbjct: 5   ILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVML--PELNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  +
Sbjct: 63  EVLRRLRRTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSSM 122

Query: 122 SNNR-----------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           ++                      G +++        V      L +RE  +L+ L+ N 
Sbjct: 123 ADGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLENM 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +++  +   + G +D   E N+V+ ++  LR K+ +  G   + + R +GY I
Sbjct: 183 DIVLSRETLLDKVCG-YDYVGETNIVDVYVRYLRSKIDDAFGIKLIQTVRGVGYVI 237


>gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 223

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +  S++     E           D   ++  L   G+   
Sbjct: 3   ILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIML--PGKDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +  D R     G+   L  +E  +LE LM N+   + + QI    + 
Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+        + + R  GY +
Sbjct: 180 NYDYEGGSNVIDVYIRYLRKKIDAGYEKKLIHTVRGTGYVM 220


>gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
 gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +      +      S AR D+  ++  L   G+   
Sbjct: 8   ILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDSMRRTLSEARVDLIVLDVML--PGDDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR HSQVP+I ++        +   + G DD + KP   RE+ ARV A+ RR   
Sbjct: 66  TLCREIREHSQVPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRRSGF 125

Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +                         QGE  PL   +  +L+  + +  + + +  I   
Sbjct: 126 NRADNPRFVCFDRWRLDTQAHELISDQGETTPLSGADFSLLQLFLTHPNEVLDRDTISGV 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             G  +    + VV+  +S+LR++L ++      + + R  GY +
Sbjct: 186 TRGR-ESMPLDRVVDVAVSRLRQRLGDQGRSPRLIKTVRGAGYLL 229


>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              ++     E       S   D+  ++  L       +
Sbjct: 3   ILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVML--PKLNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + IR     +P++ ++   S Q  +   D+G DD V KP    E+ AR+ A + R  
Sbjct: 61  NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +  +         L  +E  +LE  + N  +  +++ I   ++ 
Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D    E  V+ HI  +R+KL+      D +++   +GY +
Sbjct: 181 FED-PPSEEAVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRL 221


>gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2]
 gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
 gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++          G  +    + E      +  R D+  ++  L        
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV        +
Sbjct: 66  DILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        GP++V    R   ++G    L R+E  +L  L  + G+ V + Q+   I+
Sbjct: 126 GESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G +++  ++      + +    D   ++  L   G    
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVML--PGMDGY 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
            L R +R      P++ ++   SL+  L     G DD V KP        R  +    A 
Sbjct: 74  TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       I +  +  +    G++  L   E  +L Y M N    ++K QI  
Sbjct: 134 KSDGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILE 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-HYDFGGDMNVVESYVSYLRRKI-DTGEKKMLQTLRGVGYVL 236


>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
 gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
          Length = 234

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         D G  ++  N       + +S   D+  ++  L       + 
Sbjct: 7   LVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIML--PEMDGIA 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA  +  P++ I+        +   +SG DD + KP   RE +ARV AI RR   
Sbjct: 65  ICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMRRQDQ 124

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N        + +   + +    R   +  +   L  +E  +L  +  N G+  ++ ++ 
Sbjct: 125 FNMVASKEADQLQFNSLEIDEKKRKVLLDEKRMDLTPKEFDLLVLMAKNPGRSYSRGELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+G +D +  E+ V +HI++LR K+  +    + + +   +GY  +
Sbjct: 185 ELIWG-YDFSGYEHTVNAHINRLRAKIEKDPNNPNFILTTWGVGYRFN 231


>gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 81/226 (35%), Gaps = 15/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       +  +++    +      +  + + D+  ++          +
Sbjct: 6   ILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILENTKVDLIVLDVM--MPKMDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           +    IR    VP+I +S        +     G DD V KP +          ++     
Sbjct: 64  KACMKIREKLNVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYKQ 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +     +   + +     +  ++ +   L   E +IL  L  NRGK  +   I
Sbjct: 124 LNNNFKALQEEVIQIDELSINISTHEVFLKDKQIKLTPYEFKILVLLAQNRGKVFSIASI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  ++   D    +  V  HI ++R+K+    G D + +   +GY 
Sbjct: 184 YENVW-EEDYVASDRTVTVHIRRIREKI----GRDYIKTVWGVGYK 224


>gi|94312408|ref|YP_585618.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356260|gb|ABF10349.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Cupriavidus metallidurans CH34]
          Length = 261

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G+  EG           S    D+  ++  L   GE  L
Sbjct: 29  LLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSL--PGENGL 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P+I ++    L   +   + G DD V KP   RE++AR+  + RR + 
Sbjct: 87  TLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRA 146

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              R                      +  + +  V PL   E R+L   + +  + + + 
Sbjct: 147 DVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLDRE 206

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + +   G  D  V +  ++  +S+LR+KLR+       + + R  GY  
Sbjct: 207 MLINTARGR-DLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVF 255


>gi|86751280|ref|YP_487776.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574308|gb|ABD08865.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S        +    D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGLNFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     +  ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSP 138

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          GP     D  +     E   L  RER +L  L A  G+ V + ++    
Sbjct: 139 APASKAETIAFGPYVFHIDRGELRQGDETIHLTDRERDMLRVLAAAPGETVPRGELT--- 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                    E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 196 --GGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRL 237


>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
 gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R  +   P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQA 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 PKVPGAPAQEEESVSFGEFSLNLATREMYRGEESIALTSGEFAVLKVLVNHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDATSPRYIQTVWGLGYVF 233


>gi|71277942|ref|YP_269189.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71143682|gb|AAZ24155.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 242

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L +    + F ++G  +    + E  E L      D+  ++      G+  L
Sbjct: 7   ILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLILGTVDLILLDI--RMPGKDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R +++V +I ++        L   + G D+ V KP + REILAR   + RR+++
Sbjct: 65  TLTRELRVNNEVGIILVTGSQDEVDRLIGLECGADEYVTKPFNPREILARAKNLIRRVRL 124

Query: 122 SNNRAETGPIRVFSDGRDPEV-----------QGEVFPLPRRERRILEYLMANRGKRVAK 170
                            D              +     L   E ++L+ LM + G+ + +
Sbjct: 125 CQKVKSADNDDYILKAFDCWKLNPVRRQLIDEEQTTVQLTEGEFQLLKCLMDHVGQIMTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            QI   I    +    +  V+  I +LR+KL +       + +    GY  
Sbjct: 185 DQILDQIRNR-EWVPTDRTVDVLIGRLRRKLGDDSTNPRLILTVHGAGYLF 234


>gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 244

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I        S++   +L+    +    + D+  ++  L       +
Sbjct: 16  ILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIEHKKLDLILMDRML--PDGDGI 73

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            L   +R    +VPL+ ++   S    +   ++G DD + KP    E+ ARV       +
Sbjct: 74  MLCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLRRGK 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  + E   + + S  R+     +   L  RE  +L +L  +  +  ++ Q+  A+
Sbjct: 134 TQHEQTQQIEFNSVSINSSTREVTAFNKALTLTAREFDLLLFLAKHPQQVFSRMQLLEAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G ++    E+ V SHI++LR KL       D V +   +GY  
Sbjct: 194 WG-YNYDGYEHTVNSHINRLRNKLSLCSPEHDLVKTVWGVGYKF 236


>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
 gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +R+     P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|218677215|ref|YP_002396034.1| putative DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218325483|emb|CAV27655.1| putative DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D    ++       + G +++     +    +  S+   +  ++  L    G KV
Sbjct: 3   ILIIEDDTTTREFVAKGLEEHGYAVDQAEDGKKGLMMALSSEYQLVILDRMLPYLDGMKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
           L   +       +P++ +S   S++  +    +G DD + KP         +  +    +
Sbjct: 63  LSAIKATEE--NLPVLILSAMDSVEDRVSGLQAGSDDYLIKPFALAELVARVDIIINRTK 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R  V+        + +         + +   L  +E ++++Y + +  + V++ ++F AI
Sbjct: 121 RQPVTETNLIYDCLDIDLRAHRVVCKNQDLQLQPKEFQLIQYFVEHSEQVVSRMRLFEAI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H++ LR+KL      D + + R  GY +
Sbjct: 181 WS-YHFDPKTNVIDVHVANLRRKLEEAGCPDLLHTVRGAGYVL 222


>gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17]
 gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G     +   E           D++  +          L
Sbjct: 5   IALVDDDRNILTSVSIALQAEGFLTRIYADGEAALKALIDNPPDLAIFDI--KMPRMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  SQ+P+I ++              G DD + KP   R ++AR+ AI RR + 
Sbjct: 63  ELLRRLREKSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSEG 122

Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S+    T               +         +GE   L   E  ILE L    G    +
Sbjct: 123 SSQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+  A Y   D  V++  ++SHI +LR+K R     FD +++    GY  
Sbjct: 183 NQLMDAAY-QDDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGYRF 232


>gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++  E GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SEKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|331091527|ref|ZP_08340364.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403692|gb|EGG83246.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G   L   +G   E   S+          +  +  ++  L        
Sbjct: 4   ILIIEDDRHIGEGLQFLLESEGYCAELAMSVSEGREKLEKGKTQLLILDVNL--PDGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I    ++P+I ++     +  +  F+ G D+ + KP   RE+++RV  + R   +
Sbjct: 62  EFFQKI-QSKKIPVIFLTALDEEKNIVKGFNLGADEYITKPFRPRELVSRVKNVIRLTGI 120

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++R +    G + +  + +     G+   L   E ++L     NRG+ + + QI S I+
Sbjct: 121 EDSRKQELIIGNVSIHLEEKVAYKNGKQLELTALEYKVLLLFFENRGRILTRNQILSHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                 V +N +  +I +LR+K+ +     D + + R +GY I
Sbjct: 181 DDSGNFVNDNTLTVYIKRLREKIEDNPYEPDIIKTVRGMGYKI 223


>gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++         G+   G                D+  ++          L
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIG--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP++ +S        +   + G DD V KP   RE++ARV  I RR + 
Sbjct: 63  EVCRRLRHISDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRARP 122

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +                           G+   L   E  IL+  +A     + +  + +
Sbjct: 123 AVPEPADDRRFSHGKLALAPASHTASFDGKPLSLTGIEFSILKGFLARPAHVLDRDAVTA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Y   +  V    V+SHI  +R KL      D +++   +G+ +
Sbjct: 183 SAY-AANIHVAGRTVDSHIRNIRAKLAAVGCPDVIETVHGVGFRL 226


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S++  ++      + +    D   ++  L   G    
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVML--PGMDGY 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115
            L R +R      P++ ++   SL+  L     G DD V KP        R  +    A 
Sbjct: 74  TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       I +  +  +    G + PL   E  +L Y M N    ++K QI  
Sbjct: 134 KSDGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILE 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-HYDFGGDMNVVESYVSYLRRKI-DTGEKKMLQTLRGVGYVL 236


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G ++              +   D   ++  L       L
Sbjct: 10  ILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLML--PNVDGL 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-----RVAAI 115
           E+ R IR  ++  P+I IS   S    +   ++G DD + KP   +E++A          
Sbjct: 68  EICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++   +   + +    R   + G+   L  RE  +L +   + G+  ++  +  
Sbjct: 128 AMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALLE 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
            ++G +     E+ V +HI++LR K+  +    + V +    GY   + N
Sbjct: 188 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQN 236


>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  +E  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++  E GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SEKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|307150045|ref|YP_003885429.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980273|gb|ADN12154.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V++     F  +    E     +    L    + D+  ++  L    E   
Sbjct: 10  IMVVDDDAAVRNLISRFFSYNNYETETAADAKTARGLFQKFQPDLVILDVNL--PDESGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR    + ++ ++        L+ F+ G DD + KP     + A+V A+++R  +
Sbjct: 68  KLCQEIRKTGVI-VLMLTCMTDTNYVLEGFEKGADDYLTKPFDLEILKAKVGALFKRRSL 126

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   A+          + +  +  +  +      L   E  +L +L  +  +   + ++ 
Sbjct: 127 TQPYADTLQNRLIFNELMIDVEKCEVTLNNNPVALTTLEYDLLYFLATHPNRVWDRAELI 186

Query: 175 SAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++++   +E    E  V+ HI ++RKK+ +  G   + + R  GY  +
Sbjct: 187 TSVWSDDNEQEKAERKVDVHIGQIRKKIGDLDG-KLIKTVRGKGYMFE 233


>gi|254429139|ref|ZP_05042846.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195308|gb|EDX90267.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +  +     +  ++      +      +    D+  ++  L        +
Sbjct: 5   LIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGL--PDMNGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R HS++P++ ++        +   + G DD V KP   RE++AR+ AI +RL   
Sbjct: 63  VLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGPK 122

Query: 123 NNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++           +V   G     +     L R E RIL  ++   G+  ++ Q+     
Sbjct: 123 SDADIDTNKTTLWQVDDSGLRVFFRHTELSLTRSEYRILTTMVQRPGQVFSRAQLLDIC- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE   E  V++HI  LR KLR   G   + ++R +GY +D
Sbjct: 182 -DSDEDSFERSVDTHIKTLRAKLRPLNGDHLIVTRRGIGYLLD 223


>gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
 gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++        +G  +  F++      L       ++  +  L       +
Sbjct: 5   IFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLML--PKMSGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + IR  +   P++ +S        ++  DSG DD + KP    E+ ARV ++ RR  
Sbjct: 63  DAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+         V    R  ++ G+   L  +E ++L YLM N+ + V + ++ + I+G 
Sbjct: 123 TSDVIKTKHL-VVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 181 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 219


>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
           [Shewanella loihica PV-4]
 gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella loihica PV-4]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       + G ++    +         S   D+  ++  L        
Sbjct: 16  ILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVML--PDMNGW 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++   IR  +S +P++ ++   SL+  ++  +SG DD + KP    E+LARV        
Sbjct: 74  QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++ ++      +++    R    +     L  +E  +LE L+ ++G+ + ++ I S ++
Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 194 DM-NFDSDTNVIDVAIRRLRAKVDDPFSVKLIHTVRGMGYKLD 235


>gi|330951730|gb|EGH51990.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSGVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  E GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SEKPESALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|289678146|ref|ZP_06499036.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|330895769|gb|EGH28058.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330950912|gb|EGH51172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N      ++        D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 245

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + +         G      N     + L      D+  ++  L    G  V
Sbjct: 4   ILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDGFTV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++     Q  +D F++G DD + KP    E+LARV A+ RR  
Sbjct: 64  CQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLRRTD 123

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+   I  +       +  +     +   L   E  +L  L+   G+ V+ ++I 
Sbjct: 124 RIPQAAKHSEILSYGPLTLVPERFEAIWLDKTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 184 KEVWG-YDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC
           BAA-895]
 gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 8   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIML--PDVNGW 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 66  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N+     + + R +GY ++ 
Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNEFEPKLIQTVRGVGYVLEV 228


>gi|324994942|gb|EGC26855.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325696258|gb|EGD38149.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327474619|gb|EGF20024.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490177|gb|EGF21965.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMVKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD + KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYITKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|317489938|ref|ZP_07948430.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325829806|ref|ZP_08163264.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|316910936|gb|EFV32553.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487973|gb|EGC90410.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 234

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +            +E   + +    L       V  ++           +
Sbjct: 6   LIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLERKSPSVILVDLM--MPEMNGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             +  R  S  P+I IS        +   D G D  + KP    E+LA + A+ RR    
Sbjct: 64  FIKEARLVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRRCNAL 123

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G I    +         V      E +I   L ++ G+   K 
Sbjct: 124 SASGPSNISPDGSVVRMGAIEFDKESLIVRKNSNVVSFTASELKIFSKLFSSPGRVYTKA 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q++  I        E+  +  HIS +R K+ +       + + R LGY  +
Sbjct: 184 QLYELISASSHGGGED-SIMVHISNIRSKIEDDPNNPAHIVTVRGLGYRFE 233


>gi|325681430|ref|ZP_08160956.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324106920|gb|EGC01210.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +    L  D G              L  +   D+  ++  L  K     
Sbjct: 5   IAVIEDDREINNILFRLLTDSGYEAVQAFDGSEASRLLKAENFDLVLMDLMLPYK--SGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            L   IR  SQ P+I IS    ++T L+    G DD + KP    E+     V       
Sbjct: 63  RLIAEIRETSQTPVIVISAKSMMETKLEVLRLGADDYIIKPFDIDEVLVRIEVVLRRTAG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E G I + +      + G    L  +E  +L   M +  K   K +++ +++ 
Sbjct: 123 SQHSDSLEVGGIVLNNTENSVTLDGTAVRLTAKELMLLRLFMEHPQKVYTKAELYESVWN 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 E+N +  H+S LR KL+   G D +D+   +GY +
Sbjct: 183 DT-YYYEDNTINVHVSNLRSKLKKAGGRDFIDTVWGIGYRL 222


>gi|224500673|ref|ZP_03669022.1| hypothetical protein LmonF1_13771 [Listeria monocytogenes Finland
           1988]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKMGYEAFFKDDYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R  +
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      +  + + D+  ++  L        
Sbjct: 3   ILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVML--PDVDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +R    Q+P++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R E   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNAIDVAIRRLRAKIDDPFEPKLIHTVRGMGYTLD 222


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   + +       + + ++  +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIK-NIDLMVLDVMMPNMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q+P++ +S   +    +    +G DD V KP +  E++AR+ ++ RR   
Sbjct: 62  QVVKEVRKELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSNY 121

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + N  E   + V              + GE   L   E  IL  L +N  +  +  +IF 
Sbjct: 122 ATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++   +  V    V  H+S LR K+     G   + +   +GY I
Sbjct: 182 RVW-QQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|22536790|ref|NP_687641.1| DNA-binding response regulator VncR [Streptococcus agalactiae
           2603V/R]
 gi|25010662|ref|NP_735057.1| hypothetical protein gbs0597 [Streptococcus agalactiae NEM316]
 gi|76788680|ref|YP_329329.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909]
 gi|76799863|ref|ZP_00781893.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|77406749|ref|ZP_00783785.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B]
 gi|77408530|ref|ZP_00785267.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1]
 gi|77411096|ref|ZP_00787449.1| DNA-binding response regulator VncR [Streptococcus agalactiae
           CJB111]
 gi|77414291|ref|ZP_00790450.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515]
 gi|22533635|gb|AAM99513.1|AE014219_5 DNA-binding response regulator VncR [Streptococcus agalactiae
           2603V/R]
 gi|23095016|emb|CAD46241.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563737|gb|ABA46321.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909]
 gi|76584783|gb|EAO61511.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|77159670|gb|EAO70822.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515]
 gi|77162819|gb|EAO73777.1| DNA-binding response regulator VncR [Streptococcus agalactiae
           CJB111]
 gi|77172887|gb|EAO76019.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1]
 gi|77174626|gb|EAO77459.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B]
          Length = 217

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  L+++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNFG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++  E   +  +E  IL+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + VV+ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEIPYDRVVDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      D+  ++  L        
Sbjct: 3   LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNL--PELDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+    R        
Sbjct: 61  TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDTKLIHTLRGVGYVLE 221


>gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586]
 gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586]
          Length = 236

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L  +   D+  ++      G+   
Sbjct: 7   ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
            L + +R HS VP+I ++        +   + G DD + K    RE       IL R   
Sbjct: 65  TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +   +          V  L   +  +L   + +  K + +  I 
Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKLLTRDDIA 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228


>gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 236

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++L++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERLKDNPDFE-IVTMRGIGYK 232


>gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D         G  +E  N          S   D+  ++  L   G    E
Sbjct: 5   LIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLML--PGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR     P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREEKNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYERL 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+  E   IR+    R   V GE      +E  +L +L  +      K ++F 
Sbjct: 123 IGSNAVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELFR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 183 EIWDM-ESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRF 227


>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
 gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ + +  F S E       S   D++ ++  L       L
Sbjct: 5   ILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIML--PDISGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111
            + + IR      P+I +S        +     G DD + KP            +    +
Sbjct: 63  SICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +   +  ++   +   + +     +  + GE   L   E  IL  L+  R   V+  
Sbjct: 123 KYNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++F  I+         N +  HI  LR+K+++       + +   +GY I
Sbjct: 183 ELFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232


>gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++            +    + +            ++ ++          L
Sbjct: 5   LLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIM--MPVMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S +P+I ++        +   + G DD + KP    E++ARV +  RR + 
Sbjct: 63  TMTMKLREVSDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLRRYEQ 122

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N                     + ++  V G    L ++E +ILE LM+  GK  +  
Sbjct: 123 ILNLKGNIQKPNNQLIVGGLVLDQETKEVFVNGRSVRLTKKEFQILELLMSYPGKVYSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+ +I+   + A+    +  H+ +LR+K+  N    + + +   +GY I+ 
Sbjct: 183 EIYESIW--EETAINTETIMVHVRRLREKIEANPKHPEYLKAVWGVGYKIEK 232


>gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 259

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     + +P++ ++     +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     GP+ +  +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPLGASNQNEILSYGPLTLVPERFEAIWFDSPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1]
 gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32]
 gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR
           [Shewanella putrefaciens 200]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 LEVPGAPAQQEAEISFGEFSLDLATREMYHGDEAIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|330957398|gb|EGH57658.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENEHAVIILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRGGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+   +++  V
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRIV 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  + E                         L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++        +    S+  D+  ++  L        
Sbjct: 3   ILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGL--PRLSGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA    VP++ ++   S++  +   D G DD + KP   +E+ ARV A   R +
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--I 177
             ++   + GP+     GR   + G V  L  RE  +LE L+   G+ V+K Q+     +
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+   +G   + + R LGY ++ 
Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKIE--VGPVRIATVRGLGYCLEK 220


>gi|257871018|ref|ZP_05650671.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
 gi|257805182|gb|EEV34004.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++++D   +          +G         +    L +      D+  ++  L      
Sbjct: 5   ILIVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQTDLFDLILLDWMLPI--YD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 63  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    + +            +       +V GE   L  +E  IL  LM        + +
Sbjct: 123 QREAQQQKNQQNQLVVGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229


>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
           F2-515]
          Length = 220

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 84/216 (38%), Gaps = 12/216 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE              
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     +  N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           +   ++G +D   +   V+  + +LR+K+ +     
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHP 218


>gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099]
 gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099]
 gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +G  +E     +  E        D+  ++  +    G ++
Sbjct: 6   IMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVSGIEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R+     ++P+I ++        +    +G DD + KP    E +ARV A     +
Sbjct: 66  CRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRRAK 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V ++  + G I +  +      +     L   E R+LE++M + G+  +++Q+   ++
Sbjct: 126 PEVLSSVLKVGDIVLDRESHRVYRKKSEIRLGPTEFRLLEFMMRHPGRVFSRSQLLDNVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     ++E  V+ H+ +LRK + N    D + + R  GY+I
Sbjct: 186 GETIY-IDERTVDVHVGRLRKAVNNGRMPDVIRTIRGAGYAI 226


>gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G+ +   +  +  +        D+  ++      G+  L
Sbjct: 7   ILVVDDHRDIRDLVGRYLQEHGLRVLLADGGDAMKRQLRQHSVDLVVLDIM--MPGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R H+++P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 65  TLCRYLREHTELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLRRTTA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
              +      +  +                      L   E ++L   + + G+ +++ Q
Sbjct: 125 LPPQRSPMAGQSLTFEGWTLDVDRHQLIDPEGVEVSLSTAEYKLLLAFLEHAGRVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           +     G  +    +  +++H+S+LR+K+         + +    GY 
Sbjct: 185 LMDLTLGR-EADAFDRSIDNHVSRLRRKIDPDARSPRLIKTIWGGGYQ 231


>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G + E   +             D+  ++  L   G   +E
Sbjct: 8   LIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVML--PGMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +++  ++  D G DD + KP    E++AR+    RR  +S
Sbjct: 66  ICRRVRTVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRDIS 125

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + A        + +F    + +V GE   L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G FD   E NVV+ +I  LR KL ++     + + R +GY 
Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHKKYIYTVRGVGYV 225


>gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271]
 gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +      L      S++     +      +    D+  ++           
Sbjct: 9   LLLVEDERDLNASLTKLLKKQQYSVDSAFDGQEALDFLAVGSYDLIILDIM--MPHMDGF 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    IR   + VP++ ++   ++   +   D G DD + KP    E+LAR+  + RR  
Sbjct: 67  EFLERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPL 126

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++ E GPIR+    +     G+   L  +E  +LEYL+ N+ + +++ QI   ++
Sbjct: 127 RHILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +++  E N ++  I  +R+KL ++     + +KR LGY 
Sbjct: 187 D-YEQEAESNTIDVLIKNIRRKLDSEGQPSLIQTKRGLGYV 226


>gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +   +              +    +  ++  L   GE  L
Sbjct: 7   ILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHYQIVVLDLML--PGESGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  + VP+I ++        +   + G DD V KP + RE+LAR+ A+ RR   
Sbjct: 65  ELARWLRGQANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRSSE 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           +      G  R          Q             PL   E  +L  L+    + + +  
Sbjct: 125 APETRVVGEPRSLHFSGWTLEQARRRLLNPEGTEVPLTGGEYDLLMALLDRANRVLTRDM 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +F  + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 185 LFDLLRGRQAGPFD-RAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232


>gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + GV ++     +            V  ++  L       L
Sbjct: 5   ILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVML--PNMNGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------A 110
           ++ R IR       +I ++   S    +   + G DD + KP   RE+            
Sbjct: 63  DICRQIRDKRPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVH 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +   +      +     G +R+        +  +   L   E  +L +L  + G+  ++
Sbjct: 123 VLQQSHVPSPQESEALCIGTLRIEQKNHQVFLAEQELVLTATEFELLHHLANHPGQVFSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +Q+  +++G +  +  E+ V SHI++LR KL  N      V +   +GY  +
Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRAKLEKNATSPKIVQTVWGVGYKFN 233


>gi|313498314|gb|ADR59680.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 238

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L++D   A    +G  +   ++ E  E L +S   D+  ++  L   G+  L 
Sbjct: 6   LIVDDDPLIRDLLQAYLSREGYDVHCADTAERAEALLASQDVDLVLLDIRL--PGKDGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S+V +I ++        +   + G DD V KP++ RE+++R   + RR++ +
Sbjct: 64  LTRELRVRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123

Query: 123 NNRAETGPIRVFSDGRDPE-----------VQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                           G    L   E ++L   + N G  +++ 
Sbjct: 124 REAHPAPACPQSLKQFADWALDTDRRRLIDACGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   I    +    +  ++  + +LR+KL  +      + +    GY  
Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232


>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
 gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +  S++     +        A  D   ++          L
Sbjct: 3   ILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIM--MPVLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R   SQ P++ ++   S++  +   D+G +D + KP    E+LAR+  + R+ K
Sbjct: 61  SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           V  D       G    L  +E  +L YL+ N G  +++ ++   ++ 
Sbjct: 121 EAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 180 NYDYAGGSNVIDVYIRYLRKKIDEGSQTKLIHTVRGAGYVM 220


>gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 262

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     + +P++ ++     +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     GP+ +  +  +     +   L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGSTNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|298290182|ref|YP_003692121.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296926693|gb|ADH87502.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G S+         +   ++   D+  ++   +  GE  +
Sbjct: 6   ILVVDDDAGIRSLVSESLSLHGFSVLEARDTRAMDRALAANAIDLIILDV--LMPGEDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +   +  P++ +S        +   + G D  + KP   RE+LA V A  RR   
Sbjct: 64  SACRRLAGRAGPPVVMLSAMDQPTDRVVGLELGADYYLGKPCDPRELLAVVRATLRRRGA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
             +       R      D               L   E  +L   +    + + + Q+  
Sbjct: 124 DEDTDSRARYRFLGWTVDFAAYELRDGAGALVHLTDGEFAVLRSFVQRPRRVLTRDQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A  G  D    +  V+  +S+LR+KLR     D + + R  GY  
Sbjct: 184 AARG-PDSEALDRAVDVQVSRLRRKLRADS--DLIRTIRNEGYMF 225


>gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
 gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +     +   ++   + +       S   D    +  L   G    
Sbjct: 3   ILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIML--PGIDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           E+ R IR      P++ ++    ++  +   D G DD + KP    E++AR         
Sbjct: 61  EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++N      + V  +  D         L  RE  ILEY++ N+ + +++ QI  
Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+  +D     NV++ +I  LR+K+        + + R +GY +
Sbjct: 181 HIWN-YDYEGGTNVIDVYIRYLRRKIDKDFEPKLIHTIRGVGYVL 224


>gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   + +P+I ++        +   + G DD + KP + RE        +  R 
Sbjct: 66  SICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             E G  ++    R+         L   E  +L+ L+ +  + +++ +
Sbjct: 126 SEAPGAPSKDVQIVEFGNYKLNLATREMTAGDTPLTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus
           10329]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L +    D+  ++      GE   
Sbjct: 6   ILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIM--MPGEDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R +S +P+I ++        +   + G DD + K    RE+LAR+  I RR + 
Sbjct: 64  TLCQKLRKNSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQS 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR-------ILEYLMANRGKRVAKTQIF 174
           + N   T  +R      D   +       R  ++       +L   + +    +++  I 
Sbjct: 124 TANSKLTRKVRFDDWLLDTVTRQLTHVASREVKQLSGADLSLLGLFVNHAQSILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227


>gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda
           FL6-60]
          Length = 220

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +  + +   +      L  S    +  ++  L   G    
Sbjct: 3   ILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGL--PGMDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  R      P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR++
Sbjct: 61  SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N A +   I +    +     G    +  +E  IL  LM   G+ +++  +   +Y 
Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             DE +  N +E HI  LR+KL    G + + + R +GY ++ 
Sbjct: 181 WQDE-LSSNSLEVHIHNLRRKL----GKNRIKTLRGVGYRLEK 218


>gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++        +    S+  D+  ++  L        
Sbjct: 3   ILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGL--PRLSGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA    VP++ ++   S++  +   D G DD + KP   +E+ ARV A   R +
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--I 177
             ++   + GP+     GR   + G V  L  RE  +LE L+   G+ V+K Q+     +
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+   +G   + + R LGY ++ 
Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKIE--VGPVRIATVRGLGYCLEK 220


>gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +RA     P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL   + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGYLFNE 222


>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D         G  +E  N          S   D+  ++  L   G    E
Sbjct: 5   LIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLML--PGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR     P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREEKNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYERL 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+  E   IR+    R   V GE      +E  +L +L  +      K ++F 
Sbjct: 123 IGSNTVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELFR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 183 EIWDM-ESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRF 227


>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          L  + G  +                  D+  ++           
Sbjct: 3   ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVM--MPKTNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                              E +       +  L   E R+L YLM N G+ +  +QI + 
Sbjct: 121 DMLNPSARLSHGDITLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNSGRVLNTSQILNK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+  +      V + R LGY  +
Sbjct: 181 VWG-YDCEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +  G +G  +   ++ E    LQ     +   ++  L   G   L
Sbjct: 5   ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQGRQSFEAMILDLNL--PGIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A S +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 63  EVCRHVKAQSALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQT 122

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S +      + G +++        V G    L   + +IL  L    G+ +++  +  A+
Sbjct: 123 SPHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDAL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            G   EA +   ++ H+S++R ++ +       + + R  GY  
Sbjct: 183 RGEALEAFD-RSIDVHVSRIRAEIEDDPKHPRRIITVRGAGYVF 225


>gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 240

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    S E      +  R  +  ++  L   G    
Sbjct: 8   ILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVML--PGMDGF 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
            +   IR   S+VP++ ++        +    SG DD + KP    E           + 
Sbjct: 66  AVCERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRRSS 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R +        G   VF              L   E ++L       G+ +++ +I  
Sbjct: 126 WYRPEPVEEAYRFGDNEVFLLSYHARTAQGEIDLTELEVKMLSLFFQREGEAISRREILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G +    E   +++ I +LRK             + R LGY  
Sbjct: 186 NVWG-YTSDTETRTLDNFIVRLRKYFEPNPARPIYFHTVRGLGYRF 230


>gi|295091969|emb|CBK78076.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS---AIEAFLI-GK 56
           +  + +D   +++         G     F + E        A+ D+      +  L    
Sbjct: 4   LIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLPGMD 63

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVA 113
           G   +   +      ++P++ ++   S    +   D G DD + KP         +  + 
Sbjct: 64  GMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLL 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   K        G I +  + R+  ++G+   L  +E  +L YLM N  + V + ++
Sbjct: 124 KRFSDDKQEGKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   ++ HI  LR+KL        + + R +GY I
Sbjct: 184 LDRIWG-YDYDGETRTLDMHIKTLRQKLGEAGHS--IKTVRGVGYRI 227


>gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++     L   DG  +    + E    L   +   +  +   +    +  +
Sbjct: 5   ILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES---IGLVILDVEMPKKSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------A 113
            +   IR  S VP++ ++ Y         F +G DD + KP  + ++L RV         
Sbjct: 62  VVCSEIRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQ 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + V  +     ++G+   L   E  IL  L+ +R K  +  QI
Sbjct: 122 YHSTTQVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYEILRLLITHRKKIFSMEQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +I+    + + +N V  H+  LRKK+         + +    GY +D
Sbjct: 182 YQSIWNDSGQVIGDNAVMVHVRNLRKKIEKDSKNPVYIKTAWGKGYYVD 230


>gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
 gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A        +E  +       +      D+  ++  L       +E
Sbjct: 5   LIVEDDIALAKSLKAALEVKDYQIEVADCYNLAIRMFQHMTFDILVVDIQL--PDGDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  SQ+P++ ++   + +  +   +SG DD + KP   +E+ AR+ A+ RR +  
Sbjct: 63  LCEYIRKQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQSL 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            ++   G +++    R+  ++ +   L   +  IL+ LM ++ + + ++Q+  AI    +
Sbjct: 123 QDKMIVGNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAI-DQEN 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             VE+N +  H+ +LR KL    G   +++ R +GY ++ 
Sbjct: 182 NFVEDNTLSVHVKRLRDKLGIYHGHSYIETVRGIGYRLNK 221


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G  +   +  +           D+  ++  L   G    
Sbjct: 5   LLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLML--PGMNGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
           E+   +R+   + P+I ++   + +  +    SG DD + KP                  
Sbjct: 63  EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRST 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 +  +  N++   G + ++ +  +  + GE   L  +E  +L YL    G  + +
Sbjct: 123 GKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +A++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVN 234


>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        +S   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLML--PELDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ R +R     P+I ++   S    +   D G DD + KP        R         +
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 219

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++G    E   +L  +   D   ++  L       L 
Sbjct: 4   LVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGL--PKIDGLT 61

Query: 63  LPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R   RA   VP++ ++   +    +   D+G DD + KP    E+LARV A I R   
Sbjct: 62  VLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G + + +      V GE   L   E R+L YLM  +G+ V++T++   +Y  
Sbjct: 122 HASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            D   + N +E  + +LR+KL    G D + + R LGY 
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL----GVDVIKTVRGLGYR 215


>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +      G  +    S E    +  + + ++  +   ++  G    +
Sbjct: 5   LIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEK-NLDIMLLDIMLPGIDGYK 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +  R  +S + +I ++        +     G DD + KP    E++AR+ AI RR+  
Sbjct: 64  VLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRRINN 123

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            NN            ++  + +    + +   L + E  ++E  + N GK +++ +I  +
Sbjct: 124 VNNIENKKILTSGIFKLDLESKRFFKEDKEIELTQTEFLLIELFLKNEGKVLSRNEILDS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++G  D   +  VV+ ++ ++R+K+  +    + +++ R  GY 
Sbjct: 184 VWG-SDYFGDIKVVDVNMRRVRQKVENDSSSPEYINTVRGFGYK 226


>gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 223

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D             + G   +     E    +  +A  DV  ++  +    G  +
Sbjct: 3   ILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPRMDGLSM 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R     + V ++        +            V               A  R   
Sbjct: 63  VEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRDPD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G + +    R    +GE   L  RE R+LE+LM + G+ V +T +   ++  
Sbjct: 123 TVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 182 YHFDPQTNVIDVHISRLRSKIDKPFPRSLLHTVRGAGYRL 221


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +    +   ++E     E   +L      D++ ++  L       +
Sbjct: 3   LLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGL--PKLSGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R  R    + P+I ++     Q  ++  ++G DD + KP H  E+ AR+ A+  R  
Sbjct: 61  EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GPI++ + GR      E   L   E R  EYL+ N GK ++K+++   +Y 
Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LR+KL       P+ + R LGY  
Sbjct: 181 Q-DFDRDSNVLEVFIRRLRQKLDPDQDLQPITTVRGLGYRF 220


>gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1]
 gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
 gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++          G  +    + E      +  R D+  ++  L        
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV        +
Sbjct: 66  DILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        GP++V    R   ++G    L R+E  +L  L  + G+ V + Q+   I+
Sbjct: 126 GESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227


>gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+ +           +       +  ++          +
Sbjct: 6   ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  KTTFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVK 123

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +N            I +    +   V GE   L   E +ILE+LM + G+  +  QI+ 
Sbjct: 124 FSNYKINKEELKVGGIILNKIAKRVTVDGEEIRLTPIEYKILEFLMESIGQVFSIEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 184 NVWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
          Length = 218

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +G +++             +    +  ++  L   G+  L
Sbjct: 3   ILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGL--PGKDGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + I    +  P++  +   ++   ++  D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +    R+    GE   L  +E  +L  L    G  +++ Q+   +Y 
Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +  N +E HI  LRKKL        + + R +GY ++
Sbjct: 180 NYESLIGSNAIEVHIHHLRKKLSEDS----IKTVRGVGYVLE 217


>gi|289679985|ref|ZP_06500875.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 249

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           ++   DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNINASGVTDGTQMRQALTAETFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus
           thiooxidans]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D +         F + G  ++  ++    + L      +V  ++  L  +     
Sbjct: 3   ILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQR--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR  H   P+I ++   ++   ++    G DD + KP    E+LAR+ +I  R  
Sbjct: 61  WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +               L  +E R+L YLM   G+ + +T+I   ++ 
Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     + NVV+  I +LR+K+ +      + + R +GY ++
Sbjct: 181 MH-FESDSNVVDVAIRRLRRKVDDPFPDKLIHTLRGVGYVLE 221


>gi|209516071|ref|ZP_03264931.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503531|gb|EEA03527.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 231

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + +           G  ++  ++      +  +   D   ++  L   G   L 
Sbjct: 6   LIVEDDSSIAANLYDYLEAGGYEVDVASNGNAGLQMALADSWDAILLDLSL--PGMDGLT 63

Query: 63  LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR--VAAIYRR 118
           L R +R       P++ ++   +L   L  F  G DD + KP   +E+ AR        R
Sbjct: 64  LCRRLREEAGRDTPVLMLTARDALDDKLAGFVHGADDYLVKPFSLKEVGARLGAMIKRYR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+        +R+       E  G    LP +   +L  LM +  +   + ++ S ++
Sbjct: 124 GQVAAMELRFADVRLDLSTMTVERAGRAVKLPPKCLHLLRILMQSPRRTFTRAELESDVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +E  + + + +H+  LR+ LR     D +++   +GY +
Sbjct: 184 G--EELPDSDTLRTHVYTLRRALRGPGETDVIETLHGVGYRL 223


>gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
 gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
          Length = 227

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++         +L ++   D+  ++  L        
Sbjct: 3   LLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIML--PKLNGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L + +R+     P+I +S    ++  +   + G +D + KP    E    +        
Sbjct: 61  QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +      + +    R      +  PL  +E  +LEYL A RG+ V +TQI SA+
Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV+++ + +LR K+        + + R +GY +D
Sbjct: 181 WDM-NFDSDTNVIDAAVKRLRSKIDKPYQIKLIQTVRGMGYKLD 223


>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
 gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
          Length = 229

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +           D+  +   ++      +
Sbjct: 3   ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKL-HTDPDIKLMILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S++P++ +S        +    +G DD V KP +  EI+ARV ++ RR + 
Sbjct: 62  QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSEK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + +     + +             L   E  IL  L ++  +  +  +IF 
Sbjct: 122 DVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
            ++   +  +    V  H+S LR K+     G   +++   +GY 
Sbjct: 182 RVW-QQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 236

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   +       +    R D   ++      G    E
Sbjct: 12  LVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM--MPGMDGFE 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 129

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + +    +         +  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 130 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKV-DTHEPQLIQTVRGVGYVL 231


>gi|257867146|ref|ZP_05646799.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257873480|ref|ZP_05653133.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
 gi|257801202|gb|EEV30132.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257807644|gb|EEV36466.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
          Length = 235

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +          +G         +    L  Q +   D+  ++  L      
Sbjct: 5   ILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 63  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    + +            +       +V GE   L  +E  IL  LM        +  
Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229


>gi|283797816|ref|ZP_06346969.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|291074501|gb|EFE11865.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
          Length = 228

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS---AIEAFLI-GK 56
           +  + +D   +++         G     F + E        A+ D+      +  L    
Sbjct: 4   LIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLPGMD 63

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVA 113
           G   +   +      ++P++ ++   S    +   D G DD + KP         +  + 
Sbjct: 64  GMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLL 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   K        G I +  + R+  ++G+   L  +E  +L YLM N  + V + ++
Sbjct: 124 KRFSDDKQEEKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   ++ HI  LR+KL        + + R +GY I
Sbjct: 184 LDRIWG-YDYDGETRTLDMHIKTLRQKLGEAGHS--IKTVRGVGYRI 227


>gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 234

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + +         G S++ F + E        +  D+  ++  L        E+
Sbjct: 8   IVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S+VP+I +S        +   + G DD + KP         I   +  I +  
Sbjct: 66  CKRIRKNSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRRINKSP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  ET  I+V  + R+    G    L  +E      L+    K + ++ I   I+G
Sbjct: 126 IKQDNVIETFGIKVDFNQRNVFYNGTHIELSPKEFETFALLLKESTKVLKRSYILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  + +LRKK+        + +   LGY ++ 
Sbjct: 186 DPALY-DERMVDDVVKRLRKKILQYNLPVEIKTMWGLGYKLEE 227


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
 gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G ++    +              +  ++  L    G ++
Sbjct: 8   ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  R  +++P+I ++     +  +   D+G DD V KP   RE+ AR+ A    + 
Sbjct: 68  LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S      G I +        +  E   +   E ++L++ +A+  +  +++Q+   ++
Sbjct: 128 PEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ H+ +LRK L++      + + R +GY +
Sbjct: 188 GDH-VVIEERTVDVHVLRLRKALKD--AEHLIKTVRSVGYML 226


>gi|125718486|ref|YP_001035619.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125498403|gb|ABN45069.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
          Length = 228

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTIFVREDPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 62  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   +G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 122 FGNDQSLLEHQGVILNLKSTDLVFEGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 220


>gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis]
          Length = 226

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  +      E    L      D+  ++  L       ++
Sbjct: 1   MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGMD 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAAI 115
             +IIR  S +P++ IS              G DD + KP    E+       + R    
Sbjct: 59  FLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N       + +  D       GE   L   E ++L    +N  K   K QI+ 
Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYR 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +++       ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 179 SVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223


>gi|89096703|ref|ZP_01169595.1| response regulator [Bacillus sp. NRRL B-14911]
 gi|89088718|gb|EAR67827.1| response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +   N  E    +      D++ ++      G    
Sbjct: 3   IMVVDDDVYIQKLVSIHLSRKGYQVVKANDGEEALKILEGMNVDLAVVDVM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +I+     +P+I ++    L      F SG +D + KP   +E+L RVA + RR++ 
Sbjct: 61  ELTKILSEDYDIPVILLTAKGQLDDKERGFLSGSEDYIVKPFEVKELLYRVAVVLRRMER 120

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +          V      +  +  E    P +E  +L  L +   K   +  +   ++G+
Sbjct: 121 AMETVIKAGNMVLDRKNFEVMINQETILFPLKEFELLSILASRIPKIAPRALLIEQVWGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  + +HI+++R +LR       + + R +GY ++
Sbjct: 181 -DYEGSEQTLNTHINRIRDRLRKHGATVEIQTVRGIGYKLE 220


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E                 D   ++  L   G   LE
Sbjct: 8   LIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLML--PGIDGLE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           + +  RA     P+I  S   S    +   + G DD + KP          R +L R  A
Sbjct: 66  ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + R  ++         + +    R   V      L  RE  +L +   N  K  ++  + 
Sbjct: 126 LERNARIDAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 NQVWG-YQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGYKF 231


>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 225

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E             +   D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           + R +RA    +P++ ++       T+   D+G DD V KP      +    A + R   
Sbjct: 63  VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
              +     ++ HIS LRKKL +       + + R +G+  + 
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       D+G +++                 D   ++  L   G   LE
Sbjct: 8   LIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLML--PGVDGLE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           +RV    R+ +V+G+   L  RE  +L +   + GK  ++  + 
Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKL 231


>gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 229

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G +++  +  E    L  +    +  ++  L        
Sbjct: 3   LLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVML--PTLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +   + G DD + KP +HRE+LARV AI RR++ 
Sbjct: 61  EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 T   +       +    R+  ++     L   E  IL  L    G+ V+K QI 
Sbjct: 121 ITTMNTTSSNKLVVNGVTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQIS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    + +   ++ H+S +RKK+   L  + + + R  GY  
Sbjct: 181 EDVLGRRLASFD-RSIDMHVSNIRKKIAEHLPNELIKTIRGTGYVF 225


>gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 228

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L +    D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVML--PDLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +RA +  VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222


>gi|319744631|gb|EFV96979.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 221

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  L+++G      + G ++             +S   D++ +   +       L
Sbjct: 7   ILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++   
Sbjct: 64  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNFG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++  E   +  +E  IL+ L+ N G+ + + QI   ++   
Sbjct: 124 HLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKDS 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + VV+ +I +LRKKL+     D + + R +GY ++
Sbjct: 184 EEIPYDRVVDVYIKELRKKLQL----DCITTIRNVGYKLE 219


>gi|293402553|ref|ZP_06646688.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304067|gb|EFE45321.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 220

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   S    +    +   D+  ++  L   G    
Sbjct: 3   ILIIEDNDDINAMIADYLMKNKYQCDQAYSGTEGKMYFLNNHYDLIVMDLML--PGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S+VP+I ++   ++ + ++   +G DD + KP    E+LAR+    R+   
Sbjct: 61  TLLNEIRKQSKVPIIILTAKDTVDSKVNLLSAGADDYLCKPFDLEELLARIQVQLRKSDN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+   +   + + +   D  ++     L + E  ILE LM N  +   K +I+   +   
Sbjct: 121 SSELLQFKELTLNNRAYDAFIKSYSLYLTKHEYYILELLMKNPKRVFTKQEIYEYAWNDS 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++  + +HIS +RKK++     + + +   +G+ +
Sbjct: 181 -YYGDDKTITTHISNIRKKIKQVASEEYIKTIWGIGFKM 218


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIML--PGMNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +   +RA     P++ ++         +  D+G DD + KP  +  ++ARV A    R 
Sbjct: 61  RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +RV +  R     GE   L  +E  +LE+L     + V K +I   ++
Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + N+VE +IS LR+KL    G D + + R  GY +
Sbjct: 181 D-FAYEGDPNIVEVYISALRRKL----GADRILTVRGAGYRL 217


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L       L  +   ++E     +       +   D+  ++  L       +
Sbjct: 3   ILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVL--PKLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R IR+++ Q+P++ ++   S        D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V++         R+     +      + PL  +E  +LE  + N  +  +   I   ++ 
Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR+KL+      D V++   +GY +
Sbjct: 181 YEDTPQEE-AVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRL 221



 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++     L    G+      +         +   D+  ++  L       +
Sbjct: 398 ILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVEL--PYINGI 455

Query: 62  ELPRIIRAHSQV 73
           EL R++R  S  
Sbjct: 456 ELCRLVRNDSHW 467


>gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2]
          Length = 240

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P+I ++        +   + G DD + KP + RE        +  R 
Sbjct: 66  SICRRLRQMGNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRN 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             E G  ++    R+         L   E  +L+ L+ +  + +++ +
Sbjct: 126 SEAPGAPSKDVQVIEFGEYKLNLATREMTAGTTPLTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEKDPANPRYIQTVWGLGYVF 233


>gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 227

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +    +      L       +  ++  L     +  
Sbjct: 4   ILIIEDEKSVLEVTKAYLEREGYRVYCAENGLEGIKLFKKNDIQLVILDLML--PDIEGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S+V +  ++   SL   ++  + G D+ + KP+  RE+ ARV A++RR+ V
Sbjct: 62  EVCKILRKISEVYIFMLTAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGV 121

Query: 122 SNNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +A +         +      + G    L   E  IL  L ANRG+   +  I   ++
Sbjct: 122 EEPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              D    +  +++HI  LRKK+         + +   +GY  
Sbjct: 182 -TMDFEGSDRTIDAHIKNLRKKIEENSKEPRYILTVTRIGYKF 223


>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 271

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +                R D   ++  L       L
Sbjct: 46  LLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVML--PDMDGL 103

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIY 116
            +  R+ R   +VP++ ++   +++  +    +G DD V KP    E++ R    +    
Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + +  +  +    G+   L   E  +L  LM +  + ++K QI   
Sbjct: 164 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 223

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+K+ +      + ++R  GY +
Sbjct: 224 VWS-YDFGGQANVVEIYISYLRRKI-DAGRAPMIHTRRGAGYLL 265


>gi|298491352|ref|YP_003721529.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233270|gb|ADI64406.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 233

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L       +  ++  L        
Sbjct: 6   IMIVDDDFSVRNLVYRFLSRK-YRIESAADGKSAMALFEQFNPALVILDWNL--PDVNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
           +L + +++ + V ++ ++        +    +G DD + KP         + A +  I  
Sbjct: 63  KLCQEMQSRTNVLVLILTSRNDEADKISVLAAGADDFMTKPFSLAEVEVRVEALLRRIRY 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L ++ G+  ++ Q+   I
Sbjct: 123 IHPSQSQRLVFKQLAINPEGREVTLNDKPLALTALEFNILHFLASHPGQAWSRPQLIQKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKK+  +    + + + R  GY  +
Sbjct: 183 WGC-DYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 226


>gi|166710603|ref|ZP_02241810.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 259

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 29  LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQS 146

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +++         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 147 SNEQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 207 LDCARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252


>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  RA S   Q+P++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 66  LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++    G + + +       QG+   +   E ++L YLM +  +  ++ Q+   I
Sbjct: 126 APEQVSDSVSIGELVLDAATHRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVGGA--MVETVRGAGYRL 225


>gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +             +           L S+ + D+ AI   L       L
Sbjct: 6   ILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHK-DIDAIILDLFLPDCNGL 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL + +R+HS     P++ ++        +   + G DD + KP H RE++AR+    RR
Sbjct: 65  ELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLRR 124

Query: 119 LKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +     T             R+ +    +  L   E  +L   + + GK  ++  + 
Sbjct: 125 AQNTIRSHNTSRSISGITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSRDDLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G      E  V++ HIS LRKKL +      +++ R +GY +
Sbjct: 185 TKLWGES-FVSETRVIDMHISSLRKKL-DDSDNQLIETIRGVGYRL 228


>gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +++  +    D G         +    L    + D++ I+  L       L 
Sbjct: 4   LVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFVEHKPDLAIIDINL--PKMSGLN 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++   S +  +     G DD   K   +  +L        R    
Sbjct: 62  VCKAIRTTSTMPILIVTARDSDEDEVKGLSMGADDY-IKKPFNPNVLVARVQALLRRHDR 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLF 181
             R     + +  +       G    L      +L  L ++    +++ Q+ + IY    
Sbjct: 121 TRRRHFKGLVIDPETMSVMKGGTSITLTTTRFNLLLALASHPRAVLSRAQLVNQIYSDPS 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              V +  +++HI  LR+ +  +      +++    GY  
Sbjct: 181 SHFVYDRTIDAHIKALRQSIETDPKNPQFIETVFGSGYRF 220


>gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 236

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   NS      +      +   ++      G    E
Sbjct: 12  LVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVM--MPGMDGFE 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   S+   +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 129

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +      +         D  +    GE+  L   E  +L +LM N+   ++K +I   
Sbjct: 130 GQDENSDATMSYADLTLNDDTHEVTKGGEIIDLSPTEFNLLRFLMQNKEVVLSKAKILDN 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKI-DTGDSPLIHTVRGVGYVL 231


>gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++  +  +   +G +++G +  +           D+   +           
Sbjct: 4   ILIAEDDLELRQLFRHVLLKNGYTVKGVSDGQEALDALEKDYYDLIISDIM--MPNMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R A   +P++ ++   +       F SG DD + KP++  E++ RV A+ RR +
Sbjct: 62  ELVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALLRRAQ 121

Query: 121 VSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N R +     +   D        E   LP++E  +L  +++  GK   + Q+   I+G
Sbjct: 122 MINERKQRIGDTILECDSLTVSTSSESMVLPQKEFMLLYKMVSFPGKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +D A + + V+ HI +LR++ R+   F  + + R +GY 
Sbjct: 182 -YDSASDAHTVDVHIGRLRERFRDNPDFK-IVTIRGVGYK 219


>gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++   A     G +++   + +    L + +  DV  ++  L         
Sbjct: 4   LLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPDD--DGFV 61

Query: 63  LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA +  P +   +   +++  +   D G DD + KP    E++ARV A+ RR   
Sbjct: 62  LCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPDH 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R+    G V  L  +E  +LE LM   G+ + +  I    +  
Sbjct: 122 AAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     NV++ +I++LR+K+        + + R  GY +
Sbjct: 181 DNFDPMSNVIDVYIARLRRKVDADGDVPLLSTVRGAGYRL 220


>gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A  +   +  F    ++ +  +  +    L      D+  ++  L       L
Sbjct: 3   ILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRML--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R+     P++ +S    +   +    +G DD + KP    E+L RV  + +R +
Sbjct: 61  TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                AE    ++  +   R   +      L  +E ++L+YLM +  K +++T +F A++
Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221


>gi|319939572|ref|ZP_08013931.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV]
 gi|319811161|gb|EFW07467.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A+++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDAVIRQQVKKMLEQWGFEVIAVEDFMQVLTIFVKEEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP  +  +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   +GEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGTDQSLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEAGLKNFIETKKGIGY 220


>gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2]
 gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2]
          Length = 242

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  +D   + +        +G +++            + A  D   ++           
Sbjct: 21  LLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIM--MPVMDGY 78

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA  ++ P++ +S   S++  +   DSG +D + KP    E++AR+  + R  K
Sbjct: 79  AVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLSK 138

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S           + +         ++  L  +E  +LEY++ N+   +++  I   I+ 
Sbjct: 139 GSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIWD 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A   N+V+ +IS LRKK+        + + R  GY I
Sbjct: 199 -FDYAGGTNLVDVYISYLRKKIDGASTCKLIHTVRGSGYVI 238


>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G + E   +             D+  ++  L   G   +E
Sbjct: 8   LIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVML--PGMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +++  ++  D G DD + KP    E++ARV    RR  +S
Sbjct: 66  ICRRVRTVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRRRDIS 125

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + A        + +F    + +V GE   L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G FD   E NVV+ +I  LR KL ++     + + R +GY 
Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHKKYIYTVRGVGYV 225


>gi|134097593|ref|YP_001103254.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910216|emb|CAM00329.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 222

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+         +G+ +   +       L  +   DV  ++  L   G     
Sbjct: 1   MVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIML--PGLSGYR 58

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLK 120
           +   +RA     P++ +S         D  D G D  + KP      +    A + R   
Sbjct: 59  VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R+    G    L  RE  +L  L    G  V+K  +   ++G 
Sbjct: 119 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVWGE 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            D+ V  NVVE ++  LR+KL        V + R  GY 
Sbjct: 179 -DQFVTRNVVEVYVGYLRRKLAAAGAGHLVQTVRGHGYR 216


>gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++    A    +  ++           +  S   D+   +           
Sbjct: 4   ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIM--MPHMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           E    +R  +   P++ ++   +++     F  G DD + KPI+    +L   A + R  
Sbjct: 62  EFTEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ +R   G + +  +      +GE   LP++E  +L  L+++  +   + Q+   I+G
Sbjct: 122 IVNEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +E  V+ HI +LR+K  +   F+ + + R LGY  + 
Sbjct: 182 M-DAETDERTVDVHIKRLREKFGDFSEFEII-TVRGLGYKAEK 222


>gi|94984195|ref|YP_603559.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554476|gb|ABF44390.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +G  +             + A  D++ ++  L   G   L
Sbjct: 4   ILIVDDDPAILEILGAYLRAEGHVVLETQDGTTGRAKLAEA--DLAILDWML--PGASGL 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R      P++ ++     +  L   ++G DD V KP   RE++ARV A+ RR +
Sbjct: 60  DLARQQRRDRPDFPILLLTARGEEEDKLRGLEAGADDYVTKPFSPREVVARVRALLRRAR 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++ +  G  ++    R   + G+   L + E  +L  L  + G   ++ ++   ++G 
Sbjct: 120 LQDSVSTGGL-QLDERTRTAMLDGQELLLSKLEFDLLLTLARHPGFVWSRDRLLERVWGA 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D    E VV+ H++ LR+KL         +++ R +GY  
Sbjct: 179 -DFPGVERVVDVHMAALRRKLGEHPEQPRFIETVRGVGYRF 218


>gi|320324918|gb|EFW80990.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
          Length = 267

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222


>gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +++  +    D G         +    L    + D++ I+  L       L+
Sbjct: 4   LVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFEEHKPDLAIIDLNL--PKMSGLD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++   S +  +     G DD   K   +  +L        R    
Sbjct: 62  VCKAIRTTSTMPILIVTARDSDEDEVKGLSMGADDY-IKKPFNPNVLVARVQALLRRHDR 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLF 181
             R     + +  +       G    L      +L  L ++    +++ Q+ + IY    
Sbjct: 121 TRRRHFKGLVIDPETMSVMKGGTSITLTTTRFNLLLALASHPRAVLSRAQLVNQIYSDPS 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              V +  +++HI  LR+ +  +      +++    GY  
Sbjct: 181 SHFVYDRTIDAHIKALRQSIEIDPKNPQFIETVFGSGYRF 220


>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 268

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLSVGDLILDPIAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRM 265


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  ++          L  S   D   ++  L   G   +
Sbjct: 3   ILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIIL--PGMSGI 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +R    SQVP++ ++   S++  ++  + G DD + KP   RE++ARV A+ RR 
Sbjct: 61  EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +V            +    R+   +GE   L  +E  +LE  M N G   ++ QI   ++
Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                    N+V+ ++  LRKKL+     + +++   +GY +
Sbjct: 181 -ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRL 221


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKAKIITTVRGVGYVI 223


>gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +    +     DG+  +G N       L    R D+  ++  L       +
Sbjct: 9   LLIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNL--PDFNGI 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++ +  L+  +   D G DD + KP    E+ ARV A  RR +
Sbjct: 67  EICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSR 126

Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +N  A   P     +++    R  +       L +RE  +L +L+ + G+  A+  I  
Sbjct: 127 YANPDAFAEPLTLGDLQLDLMSRKVQQGERELALSQREFDLLAFLVKHHGEVQARQHILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++G      + N ++ ++  LR+KL        + + R +G+ 
Sbjct: 187 SVWGAP-FVGDPNTLDVYMGYLRRKLEGPDRPRLLHTVRGVGFM 229


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +                  D+  ++  L   G   L
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWML--PGLSGL 61

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           E+ R +R+        L+   D  S    +   D+G DD V KP    E+    R     
Sbjct: 62  EICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   + +  +   + +    R+      +  L  +E  +LEYL+ +  + + + +I   
Sbjct: 122 NQDADAGDILQFEDLSLNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 182 VWD-YDFIGDSNIIEVYIRYLRLKLETNNEKRLIQTVRGVGYVL 224


>gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 232

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D       ++G  ++  +       L +    D+  ++  L   G   L 
Sbjct: 7   LVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGML--PGIDGLA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           +   +R   Q P++ ++    ++  +     G DD + KP    E++AR+          
Sbjct: 65  VLAALRQSRQTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSVGT 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R     G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 125 AHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 185 VWDM-NFDSETNVVEVAVRRLRLKLDQPFEQPLLHTVRGMGYVLE 228


>gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 236

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G ++E  +  E   W       D   ++  L   G    
Sbjct: 3   ILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLML--PGLSGD 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++     +      + G DD + KP  ++ ++AR+ A+ RR  
Sbjct: 61  EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +    R          L RRE  +LEYLM N G   +K +I   ++G
Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D   E NVVE ++  LR+K+    G   + + R  GY
Sbjct: 181 A-DFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGY 218


>gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           EO147]
 gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           C6786]
          Length = 227

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVML--PGHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I  R   
Sbjct: 61  TVLERLRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++      + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 234

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK--GEK 59
            ++++D   +++  +      G        +          R  +  ++  L G   G  
Sbjct: 6   ILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGDKSGID 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
              + +     +++P+I ++      + +   D+G DD + KP   RE+++R+ A     
Sbjct: 66  FCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRRS 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + + +  +   V  ++  +   E R+L + M++  +   + Q+   +
Sbjct: 126 NALSGDKPINIGRLTLDAKSQRFMVGDDIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  +E+  ++ H+ +LR  LR       + + R  GY  
Sbjct: 186 WG-GNVYIEDRTIDVHVKRLRTLLRPHDCDTLIQTVRGTGYRF 227


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +        +G  ++   +         S R D   ++  L       LE
Sbjct: 44  LVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIML--PDIDGLE 101

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA +   P++ ++   +++  +    +G DD V KP    E++AR+ ++ RR  +
Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGL 161

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + E       + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 162 VAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRV 221

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE ++S LR+K+ +      + + R  GY +
Sbjct: 222 W-NYDFGGQANIVELYVSYLRRKI-DAGRNPMIHTVRGAGYVL 262


>gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V K     E+ AR+ A   R  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222


>gi|302380400|ref|ZP_07268869.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311804|gb|EFK93816.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 218

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G         +    +  +   +++ ++  L       L
Sbjct: 3   LLVVEDDQMIREGICEFLSEFGYKNYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P I ++ +   +  ++ F S  D  + KP     +  RV ++ ++   
Sbjct: 61  DVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRVESLIKKHYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++   
Sbjct: 121 NNETFNYKNTEVNFTSYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216


>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 220

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G   +     E           ++  ++  L       +
Sbjct: 6   ILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLML--PRINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRL 119
           E+ R +R   Q P+I ++    +   ++    G DD       +                
Sbjct: 64  EVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMNF 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +      G +++         +     L   E  +L  L+ N G  V++ +I   ++G
Sbjct: 124 QKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  NVVE +I  LR K+    G   +++ R +GY +
Sbjct: 184 -YDEDVSTNVVEVYIRYLRNKI---PGIK-IETVRGVGYRL 219


>gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
 gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
          Length = 241

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G    A+EE  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGREYSAMEERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 233


>gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V    +    + G ++E  ++     ++ +S   D   ++  L G G   L
Sbjct: 3   ILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R+     P++ +S    +   +    +G DD ++KP    E+           +
Sbjct: 62  RLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRGK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R  +  G+   L  RE R+LE+LM +  + V +T +   ++
Sbjct: 122 TDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHVSRLRQKVDKPFTVSLIHTVRNAGYML 222


>gi|300788744|ref|YP_003769035.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|15011029|gb|AAK77357.1|AF331073_1 response regulator AmrC [Amycolatopsis mediterranei U32]
 gi|7340666|emb|CAB83036.1| putative response regulator [Amycolatopsis mediterranei]
 gi|299798258|gb|ADJ48633.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +    + E        A      ++  L   G    
Sbjct: 4   LLLVEDDEPLAEALSLALRALGHDVVHAPTGEHALTALGDAEF--VLLDVML--PGIDGF 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S++P++ ++        +   + G DD V KP   R + AR+ AI RR + 
Sbjct: 60  EVCRRIRARSRLPIVLLTARGDPIDVVAGLECGADDYVVKPAEPRVLDARIKAIGRRAQP 119

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   A     G + + +        GE   L   E R+L     +  + +++  +   ++
Sbjct: 120 AVPEAGVLRVGELAIDAAAMSVTRAGEELALTATEIRLLVEFAEHPNQVLSRQVLLKRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +    +  +V++ +++LR K+ +       + + R LGY +
Sbjct: 180 D-YGYVGDSRIVDAAVARLRAKVEDDPANPVLLRTVRGLGYRL 221


>gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 258

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRGQALAMQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++    L+  L  F+SG DD + KP    E+  RV A+ RR  
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKALLRRTH 124

Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   + +    +         +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGSSSHQEILNFGPLTLVPERFEVIWFERPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLE 232


>gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +  G      D G+ +E        ++L S+ R D   ++  L   G    
Sbjct: 3   ILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLP-DGNGTQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            L         +P++ ++           F +G DD V KP    EIL R+ A + R   
Sbjct: 62  WLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEILFRLRALVRRSHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G I + +        G    L  +E R+L +L+    + V++T++   +Y  
Sbjct: 122 HAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIVSRTELSEHVYD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+  + NV++  +S+LR+KL    G   +++ R  GY ++
Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL----GAQAIETIRGQGYRMN 217


>gi|330899210|gb|EGH30629.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 249

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           ++   DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNINASGVTDGTQMRQALTAETFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++   +     +G + EG           S+ R D+  ++  + G     + 
Sbjct: 8   LVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMMPGP--AGIR 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IRA     +I ++    +   L  F  G DD V KP    E++AR  A+ RR    
Sbjct: 66  LLPVIRAEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRRRGRL 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + V  D       G    L   E R+L+ L  +RG+ ++K QI + ++G  D
Sbjct: 126 PQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVWGYDD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+VE H+S LR+K+  + G   + + R LGY +
Sbjct: 186 Y--DPNLVEVHLSALRRKMEAR-GPRLIHTVRGLGYRL 220


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E                 D+  ++  L       +
Sbjct: 9   ILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLML--PEINGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R  S VP+I ++   S+   +  FD G DD + KP          R +L R+  
Sbjct: 67  EVCRRLRPTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIDI 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +      +     + V  + R      E+  L +RE  +L  LM N    + +T++ 
Sbjct: 127 EEEQQHRKQTKVTFRDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRTELL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +   VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 187 NKVWG-YTTEVETNVVDVYIRYLRNKIDVDGQPGYIQTVRGTGYVM 231


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   ++             L  F + +         + D++ ++  L    G  +L
Sbjct: 5   LIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYDIL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R   +   +P+I +S        +   D G DD + KP    E+ AR+ ++ RR K 
Sbjct: 65  KFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRSKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + +  D R   ++ E   L  +E  +L+YL  N G+ V++ ++ + I+G +
Sbjct: 125 DERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E   ++ HI+ LRKKL N+     + S R +GY +
Sbjct: 184 DFIGESRTLDVHINSLRKKLGNEYAH-WIQSVRQVGYRL 221


>gi|309778203|ref|ZP_07673136.1| DNA-binding response regulator VncR [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914037|gb|EFP59844.1| DNA-binding response regulator VncR [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 221

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++       + G  ++     E    L  +   D+  ++  L        
Sbjct: 5   ILLVEDEEDTREAVSEFLSEAGYHVDTARDGEIAMKLLRNNIYDMVVLDIML--PKVNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119
            +   +R HSQ+P++ ++      T L  FD   DD + KP   R  +          R 
Sbjct: 63  VVLNWLRKHSQIPVLMLTAMHDEYTQLMSFDEQADDYIIKPFSLRLLQKRMEALFRRSRA 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S N  +   I V  +G    V+ E   L  +E  +L+ L+ +  + + + QI   ++ 
Sbjct: 123 QTSTNLWQYQDIEVDFNGFCAYVRKEPVDLKPKEILLLKLLLDHANQVLTRDQILDNLW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +EA  + VV+ +I  LRKKL+     D + + + +GY  + 
Sbjct: 182 -KEEAPMDRVVDVYIKNLRKKLQL----DCIVTIKGIGYKFEE 219


>gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     +F + G  +      +       + R     ++  L        
Sbjct: 14  ILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVL--PNIFGR 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           ++ + I+     +P+I +S    +   +   + G DD V KP   RE++ARV      R+
Sbjct: 72  DVCKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRRQ 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G   +          G    L   E ++L+Y + +  + +++  + + ++
Sbjct: 132 KTSAITTYSFGDCEIDFSKMTARRGGVSITLTAHEFKLLKYFVEHAERVLSRDVLLNEVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G ++       V++ I KLR+KL         + +    GY  
Sbjct: 192 G-YNSYPTTRTVDNQILKLRQKLEPESAEPRYLRTVYGAGYKF 233


>gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++     E    L ++   D+  ++  +  +     
Sbjct: 3   ILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLR--DGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + R +R    Q P++ ++   ++   +   + G DD + KP    E+LAR+ +I  R  
Sbjct: 61  SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +          G+   L  +E  +L   +    + +++T I   ++ 
Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     + N+V+  I +LR+K+ +      + + R +GY ++
Sbjct: 181 VH-FDSDTNIVDVAIRRLRQKIDDPFPQKLLHTVRGVGYVLE 221


>gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ DG  A     G S++ F   +      S+A  D   ++  L   G   L
Sbjct: 3   ILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSL--PGMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R   Q  P++ ++   +L+  +     G DD + KP    E+ AR+ A I RR 
Sbjct: 61  DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + + S      + GE   L  RE  +LE  + N G+ + + Q+   +Y 
Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LRKKL    G   + +   +GY++
Sbjct: 181 -WDEDVSSNAVEVHIHHLRKKL----GSQFIRTIHGVGYTL 216


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +E   S +      +    D+  ++  L         
Sbjct: 82  LVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLG--DIDGFA 139

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R A   VP + ++   + Q  +     G DD V KP    E++ARV AI RR   
Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                                 R+    G +  L   E R+L++L+AN    + + Q+  
Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D + E  V+E++IS LR+K+ + +    + + R +GY +
Sbjct: 260 HVWG-HDFSGEGGVLETYISYLRRKV-DNVEPPLIHTVRGVGYVL 302


>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++D         G  +    S E    +      D+  ++      GE  L
Sbjct: 7   IAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  +++P+I ++        +   + G DD + KP + RE+LAR+ A+ RR+  
Sbjct: 65  TVCRQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVNS 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
              +      +           G            PL   E R+L   + + G  +++ Q
Sbjct: 125 LPPQRSRIKAKTIRFDVWELDTGRRELVGRDGISVPLSTAEFRLLSAFLEHPGLVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   E+ +   +++ +S+LRKK+  +      + +    GYS 
Sbjct: 185 LLDLTAGRAAESFD-RSIDNQVSRLRKKIESDPKNPSLIKTHWGGGYSF 232


>gi|16800610|ref|NP_470878.1| hypothetical protein lin1542 [Listeria innocua Clip11262]
 gi|16414015|emb|CAC96773.1| lin1542 [Listeria innocua Clip11262]
 gi|313618831|gb|EFR90714.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           S4-378]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 HTTTENDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTVWGVGYKFDE 226


>gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 245

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G       + +      ++   D+S +   L+      +
Sbjct: 19  ILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTM-PDISLVILDLMMPEMNGM 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 78  DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +   L   E  IL  L ++  +  +   IF 
Sbjct: 138 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIFE 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 198 RVW-QQESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGYKVE 243


>gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +   +    + E           D++ ++  L   G    
Sbjct: 4   ILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVML--PGIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
           ++   +R  + ++ +I ++        +   + G DD + KP +        + + R   
Sbjct: 62  KVCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRIG 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +++K   N+    P  +    +          +  +E  +++  + N  K  ++ ++ 
Sbjct: 122 DEKQVKEDINKLIREPFIIDLYSQKLFKNSIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           + I+G +D   +  +++ +I +LR K+ +     + +++    GY 
Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRAKIEDNPSEPEFIETIWGKGYR 226


>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 233

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G       +++         R D+  ++  L   G   +E
Sbjct: 7   LIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWML--PGGSGIE 64

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R I+        P+I ++   +    +   D G DD + KP   RE+    +      
Sbjct: 65  LLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRRA 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     N      + +  D R   V  E   L   E  +L + M++  +   ++Q+   +
Sbjct: 125 KSSDDRNLLVVRDLTIDIDSRRAFVGEEALQLGPTEFNLLLFFMSHPERAYTRSQLLDRV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LR  L    G     + + R  GY  
Sbjct: 185 WGA-NIYVEERTVDVHIRRLRAALDAAEGDYSQLIQTVRGTGYRF 228


>gi|227543690|ref|ZP_03973739.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908752|ref|ZP_07126215.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
 gi|77745291|gb|ABB02546.1| response regulator [Lactobacillus reuteri]
 gi|227186337|gb|EEI66408.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894159|gb|EFK87517.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
          Length = 220

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +    I     +G  +           +       +  ++  L       L 
Sbjct: 1   MLVEDEESLASFLITELELEGYEVIWAKDGREVLAIFKEKEITLILLDWML--PVYDGLT 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R I   S V +I I+            D G+DD + KP    E    +        + 
Sbjct: 59  VLRRIHQSSNVSIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVALRRLGQE 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           KV       GP  +        V G+   L  +E  ++  L+   G    +  + + I+G
Sbjct: 119 KVDKLDYHFGPFEINLLKHQFMVDGKQVHLTPKEFPLMATLIKEPGVVQTRDDLLNEIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N V+ +I  LR KL      D + + R +GY +
Sbjct: 179 -YDFDGQTNTVDVYIRALRNKLGKY--RDSIRTVRGIGYVL 216


>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 247

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 19  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 76

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 77  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 136

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 137 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 196

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 197 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 236


>gi|329940076|ref|ZP_08289358.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300902|gb|EGG44798.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 238

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
            +D     +        DG ++   +         +    D+  ++  L   G   LE+ 
Sbjct: 2   AEDDEKQAELIRRYLVHDGHTVTVVHDGPTALGEATRRPPDLLILDWML--PGLDGLEIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA    P++ ++   +    L   D G DD + KP   RE++ARV  + RR +    
Sbjct: 60  RRIRATGDTPVLMLTARSTEDELLLGLDVGADDYMTKPFRPRELVARVRTLLRRTRQPRC 119

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             E     GP+ V  D  +  V G        E R+L  L A   +   +TQ+   +   
Sbjct: 120 EEERLLSAGPLTVAPDRHEATVHGRPVHCTPAEFRLLSTLAAAPERVFTRTQLLHCVTD- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              AV E  V+ HI+ LRKK+ +     + + +   +GY +
Sbjct: 179 HGRAVTERTVDMHIANLRKKIESSPRRPELLLTVHGVGYKL 219


>gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +   +           +  +A+  +  +    +      L 
Sbjct: 6   LIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGLT 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+   
Sbjct: 66  VLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWSN 125

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S+++       +V       EV G+   L +RE  +L Y + +RG  V++  I   ++G+
Sbjct: 126 SSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWGM 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 186 -DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225


>gi|297588498|ref|ZP_06947141.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573871|gb|EFH92592.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 239

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  ++     +    + ++    +  ++  L        
Sbjct: 11  ILIVEDEKNISNAEKKYLEVEGFEVDQAFDGQEAIDMINTTDYSLIILDLML--PKVSGE 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++  IIR+ ++ P+I ++        L+    G DD + KP   + ++ +V  I RR   
Sbjct: 69  KVMEIIRSRTETPVIMVTAKIDESEILEGLKLGADDYITKPFSLKILVQKVKTILRRVEK 128

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      + G + +  D       GE   L   E +I++ L +N  K   + +I  
Sbjct: 129 LGLPKSEKIYFDNGRVSISFDDNTFIKDGESINLTSNEFQIIKTLFSNPNKIFTRDEIIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  +++HI  +R K+ +       + +   +GY +
Sbjct: 189 LSFG-YDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233


>gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 229

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G S++  ++ +        +  D+  ++  L   G    
Sbjct: 7   ILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVIDSDFDLIILDVML--PGMGGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR+    P++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 65  DVLKTIRSVKMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKAILRRYTS 124

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +          + +       +G    L   E  ILE L+ N G+ V + +I   
Sbjct: 125 PHYSEKAQELTGGNFVLDTGKLTASYRGFPLGLTVVEFNILEMLLINIGRVVTREEIALK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G    + +   ++ HIS +RKK       D + S R  GY +
Sbjct: 185 VLGRELSSFD-RSIDVHISNIRKK---ASDTDIIKSIRGAGYQL 224


>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 244

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++        D    +      +    L      +V  ++  + G     LE
Sbjct: 21  LVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGP--DGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++        L    +G DD + KP   RE++ARV  + RR ++ 
Sbjct: 79  VCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRPRIP 138

Query: 123 NNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             R       P+ V  D R  EV G      + E  +L  +  N  +   + Q+    +G
Sbjct: 139 AARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRRAWG 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             +   +++ V+ H+S LR+KL       D + + R +GY ++
Sbjct: 199 E-EWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGYRVN 240


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + D            +E   + E           D+  ++  L       L
Sbjct: 8   ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPL--MDGL 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++    ++  +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 66  SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
             +     GP+ + +  R   +      L  +E  ILE+L+ NRG  V++  +   ++G 
Sbjct: 126 KRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGN 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221
            FD     N V+ HI  LRKK+          + + R +G+ ID
Sbjct: 186 EFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIID 229


>gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
 gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++          G  +    + E      +  R D+  ++  L        
Sbjct: 8   ILLIDDEPQIRKFLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  S VP++ +S   S    +   D G +D V KP   +E LARV        +
Sbjct: 66  DILRDLREWSAVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        GP++V    R   + G    L R+E  +L  L  + G+ V + Q+   I+
Sbjct: 126 GESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQLLRDIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227


>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis H37Rv]
 gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 02_1987]
 gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T92]
 gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis 210]
 gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
 gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis W-148]
 gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 253

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 82

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 242

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              +   N+L        S   D+  ++  L       L
Sbjct: 16  ILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRML--SDGDGL 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            L + +R   +  P + I+   S    +   +SG DD + KP    E+ ARV        
Sbjct: 74  TLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSA 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + + S  R+     +   L  RE  +L YL  +  +  ++ Q+  A+
Sbjct: 134 QQAADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G +  A  E+ V SHI++LR KL       + V +   +GY  
Sbjct: 194 WG-YSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKF 236


>gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGL--PGISGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFNE 222


>gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+++           + +  +  +  ++          + 
Sbjct: 7   LVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVM--MPKLDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
               IR    +P+I +S        +     G DD V KP +  E+        R    +
Sbjct: 65  ATYKIREKKNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTF 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +  + ++  V GE   +   E +I+E LM N G+  +  +I+  
Sbjct: 125 GTFEGVKKVIDLNGLMLDKEAKEVSVNGEPVKMTPIEYKIVELLMTNAGRVFSINEIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++       E N V  HI K+R+K+  +      +     +GY ++ 
Sbjct: 185 VWNEPYYNAE-NTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230


>gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4]
 gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4]
          Length = 232

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D    L  ++G  +    + +      S    D+  ++      GE  L
Sbjct: 13  LLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEARTCLSGLSFDLLILDVM--MPGETGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R HS VP++ ++        +   + G DD + KP   +E+L R++AI RR   
Sbjct: 71  DLASWLRDHSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRRGGP 130

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + GP        + +       L  RE++IL       G  V + +I    
Sbjct: 131 RVTHVATEIKFGPFVFNPGRGELKNGDAPIRLTDREKQILSIFAEQPGATVPRHKIV--- 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               D  + E  V+  I++LR+K+ +  G    + + R +GY +
Sbjct: 188 --GDDSGLGERTVDVQINRLRRKIEDDPGNPVYLQTVRGIGYRL 229


>gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 217

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +    +      G       S E           D+  ++  L    E   E
Sbjct: 2   LLVEDDPSLSQTLLESLAAQGFKPRLATSAEAAWEALWRDPVDLIVLDVMLPEGEEAGFE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +R       I                   DD + KP    E++AR+ A+ RR +V 
Sbjct: 62  LAKELREAGFHQPILFLTARESLPDRVRGLEVGDDYLAKPFALAELVARLRALARRGEVR 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + GP+ V  + R+   +G++  L  +E ++LE  + N G+   + ++   ++G   
Sbjct: 122 PRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVINPGRIFTREEVLERVWG-PG 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+++ ++  LRKKL +    + +++ R LGY  
Sbjct: 181 FESDSNLIDVYVKNLRKKLYD----NVIETVRGLGYRF 214


>gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 227

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A   +P++ +S   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I + ++
Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DMS-FDSDTNAIDVAVKRLRAKIDNDYEPKLIQTVRGVGYMLEV 223


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++++         G  +              +    V+ ++  L       +
Sbjct: 7   LLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVML--PNLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           EL R IR  S VP++ +S        +   ++G DD V KP         I + V  + R
Sbjct: 65  ELCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++     G + V  D  +    G   PL   E R++    A  G  + ++ +   +
Sbjct: 125 EPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    +  VV+ H+ +LR K+    G + V++ R  GY +
Sbjct: 185 WD-YAWGGDTRVVDVHVQRLRAKI----GRERVETVRGFGYKL 222


>gi|257877232|ref|ZP_05656885.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
 gi|257811398|gb|EEV40218.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +          +G         +    L  Q +   D+  ++  L      
Sbjct: 5   ILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 63  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    + +            +       +V GE   L  +E  IL  LM        +  
Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229


>gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +          +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRLDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|330940340|gb|EGH43447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 255

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           ++   DV  ++  L   GE  L 
Sbjct: 29  LIVDDDVAIRELLCDYLTRFNINASGVTDGTQMRQALTAETFDVVVLDLML--PGEDGLS 86

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 87  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 146

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 147 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 207 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 250


>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G +L   +       +  + + D+  ++          +
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  +  P+I +S        +     G DD V KP    E++AR+ +  RR K 
Sbjct: 64  QACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQ 123

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            NN++      +  D            V G    L  RE  +L  L  NRG  ++  +I+
Sbjct: 124 LNNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++        +N V  HI KLR+K+  +    + + +   +GY I+
Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|228985958|ref|ZP_04146104.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228773765|gb|EEM22185.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 215

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +   +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEKDMLRILKAYFEKEDFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKYSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  ++++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 256

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++ +       ++G+ +      E    L  S++ D+  ++  L       L+
Sbjct: 6   LIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVML--PRLSGLD 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A  + P++ +S     +  ++    G DD + KP H  E+L RV  +  RL+ 
Sbjct: 64  VCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRLEW 123

Query: 122 SNNRAETG----------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                                       F         G V PL  RE  IL  L    G
Sbjct: 124 GQEAYFRRAERGVEVAPAGLSFGGHQVDFRTWNATLADGRVEPLGEREIGILRLLAERAG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + V++ +I   ++G  D       V++ I +LRK    +      + +   +GY  
Sbjct: 184 EVVSRDEILDRVWG-GDIFPSSRTVDNFIVRLRKLFEPDPAHPIYLHTVWGVGYRF 238


>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 11/225 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D A ++ G       +G  +           +    R D+  ++  L   G+   +L R
Sbjct: 2   EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIML--PGKSGFDLCR 59

Query: 66  IIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIYRR 118
            +RA     P++ +S        +   + G DD V KP   RE+LARV            
Sbjct: 60  ELRAEKNCTPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRATPGAV 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V           E F L  RE ++L  L   RG  V++  I + ++
Sbjct: 120 AADVPEEISFGKVHVDCRALRGTRGKEAFELTPRELKVLAVLHRERGNAVSRETILTEVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           G+ D       ++  + KLR+K+         + +   LGY +D 
Sbjct: 180 GI-DYYGTTRTLDQLVVKLRQKIEATPGEPQHLLTVHGLGYRLDV 223


>gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 777

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 81/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A       A    DG  +      E    L      D+  ++  L       +E
Sbjct: 555 LLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 612

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S  P+I ++        L     G DD V KP   +E++ARV A+ RR    
Sbjct: 613 VLSAIRRASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVAV 672

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQIF 174
               E       S      V              L   E  +L  L+    K   ++++ 
Sbjct: 673 RAPGEPLQHGRLSVDPAAVVASVQGENGDSVALDLTPTEFNLLALLLKTPCKAFTRSELL 732

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L D    E VV+SHI  LR+KL        + + R +GY  
Sbjct: 733 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 776


>gi|332525381|ref|ZP_08401542.1| two-component system response regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108651|gb|EGJ09875.1| two-component system response regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 229

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A     G +++ F   +  +     A  D   ++  L   G   +
Sbjct: 7   LLIVEDDPDLGDALRAGLRQAGHAVDLFPDGQQADAALRGAPYDAVVLDLGL--PGTDGV 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  R      P++ ++    ++  ++  DSG DD + KPI   E+ AR+ A+ RR  
Sbjct: 65  TWLRRWRERGLDSPVLILTARDGIEQRIEGLDSGADDYLVKPIAIAELAARLRAMARRSA 124

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    T    R     +    +G+   L  RE  +LE L+ N  + ++K Q+   +Y 
Sbjct: 125 GRSQSVWTHGALRYDPASKQVHWRGQPVELRGRELALLEVLLMNPQRVLSKVQLQEKLYD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 E N +E HI  LR+K+        V + R +GY++
Sbjct: 185 WGGAEPESNALEVHIHHLRRKI----APGIVRTVRGVGYAL 221


>gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 253

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G      +          + R D+  ++  L        
Sbjct: 19  ILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVML--PQLSGF 76

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R         P++ +S     +  +    +G DD + KP H  E L RV  + RR  
Sbjct: 77  DLCRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRRRG 136

Query: 121 VSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G    F         G    L  RE +IL+ L + RG+ V+
Sbjct: 137 WGGEHGASAAASDTALRFGGHTVDFRSWTASLADGRTELLSERELKILQLLSSRRGEVVS 196

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  I  A++G  D       V++ + +LR+             +   +GY  
Sbjct: 197 RDDILDAVWG-DDAFPSSRTVDNFVVRLRRLFEPDPARPIYFHTVWGVGYRF 247


>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 220

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +++    + G DG  +      E    L    R D+  ++      G    
Sbjct: 4   ILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLAL-KLDRYDLVLLDVM--MPGTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL R IR     P++ ++   S    +     G DD + KP    E+ ARVAA   R  +
Sbjct: 61  ELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLRRERR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G +R+    R+  V     PL + E  + E+L  + G+  ++ QI   + G 
Sbjct: 121 ERKHALSFGALRLDLASREAYVGEATVPLTKTEFDVCEFLARHPGQAFSRDQIVENVLG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D     + +  H++  R KL+     +P+D+   +GY 
Sbjct: 180 WDAESAASTISVHVANARAKLKAAGA-EPIDTVWGVGYK 217


>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
 gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      L   +G  +    +      +  + +  +  ++          L 
Sbjct: 13  LVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILDVM--MPELNGLS 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR  + +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 71  ALMKIREKNNIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRRYFAL 130

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A      V          + +   V GE   L   E +ILE LM + G      QI+
Sbjct: 131 GAAAWADSNAVLRTGGLVLDKNTKQVTVDGEPAQLTATEYKILELLMEHPGYVFPAEQIY 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           S ++   D    E  V  HI ++R+K+         +     +GY I+ 
Sbjct: 191 SRVW-QEDVYAGEKTVMVHIRRIREKIEITPKNPKYLKVVWGIGYKIEK 238


>gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +           G S     +         + + D   ++  L       +E
Sbjct: 8   LIIEDERDISRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTL--PDADGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + R +R  +  P++ +S   S    +     G DD + KP          +   R     
Sbjct: 66  VCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDP 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G + +    R          L  +E  +L +L +N  +   KTQ+   
Sbjct: 126 KLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G +   VE+N +  ++ +LR+KL         + +   +GY  D
Sbjct: 186 VWG-YSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGYKFD 230


>gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPSGYQKDIQTVRGIGYIL 225


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +++            +    ++  ++  L       L
Sbjct: 18  ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGL--PRLDGL 75

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA     P++ ++   +    +   D+G DD + KP    E+ AR+ A + R  
Sbjct: 76  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I +    +    QG    LPR+E  +L  L+A  G+ + + ++   +YG
Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +DE VE N +E HI  LRKK       + + + R +GY +D 
Sbjct: 196 -WDEDVESNALEVHIHHLRKKFF----PELIRTVRGVGYLVDK 233


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D   +          +G  +   N+      L  S + D+  ++  L    G  +
Sbjct: 5   ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLSGVDI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R+     Q P+I ++    +   +   +SG DD V KP    E+LARV A  RR+ 
Sbjct: 65  C--LRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVN 122

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                              +     +   L  +E  +LE+L+ +  + V + QI   ++G
Sbjct: 123 PEEPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E +I  LR KL        + + R +GY I
Sbjct: 183 -YDFMGESNIIEVYIRALRLKLEASNPQRILQTVRGVGYVI 222


>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
 gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++    +      +       +  ++          +
Sbjct: 3   ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIM--MPQMDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 61  RALMKIREERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYVT 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N  ++G + +  + +   V GE   L   + +IL+ L AN G+  +  QI+ 
Sbjct: 121 LGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++     + E N V  HI K+R+K+  N      +     +GY I+ 
Sbjct: 181 NVWNEAAFSAE-NTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKIEK 227


>gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA  Q P++ ++   +++  +   + G DD ++KP  + E LAR+ ++ RR   
Sbjct: 61  EVLKRLRAEKQTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAPR 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S         + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 SIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKVDNAYDKKLIHTIRGMGYVLE 220


>gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 222

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 95/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++  +  +    +  +   D+  I+  +       +
Sbjct: 3   LLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPA--LSGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++   +L+  +   D+G +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRTTN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +               L  +E  +LEYL+ N+ +   +++I   ++ +
Sbjct: 121 RVEESLSVGSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                + +V++ +I+ LR+KL +    + + + R +GY
Sbjct: 181 H-FDSDTSVIDVYITFLRRKLESAGCGNIIQTIRGVGY 217


>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +   +    +G  ++  +          S       ++  L        
Sbjct: 5   ILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVML--PTLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           ++ R IR ++QVP++ ++        +   + G DD + KP + RE       I  R  A
Sbjct: 63  DVLRRIRQNTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +  + G + +    R          L   E  +LE L+   G  +++  + 
Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
               G  + +  +  ++ H+S LRKKL     G + + S R +GY
Sbjct: 183 RQALGR-EFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGY 226


>gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
 gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
          Length = 227

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++        +G  +  F++              ++  +  L       +
Sbjct: 5   IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLML--PKMSGI 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + IR   S++P++ +S        ++  DSG DD + KP    E+ ARV ++ RR  
Sbjct: 63  DAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+         V    R  ++  +   L  +E ++L YLM N+ + V + ++ + I+G 
Sbjct: 123 TSDIIRTKHL-TVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 181 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 219


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       D+G       + +      S  +  +      ++      L
Sbjct: 27  ILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKP-IDLFILDIMMPEMDGL 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  +  P++ +S        +     G DD V+KP    E++ARV A  RR   
Sbjct: 86  ETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRRENK 145

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A    I   ++       EV G+   L  +E +IL YL+ N G+ V++ QI++A++
Sbjct: 146 HRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAVW 205

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                  + + V  HI  LR KL  +     + +   +GY ++
Sbjct: 206 -KDAFGGDLSTVTVHIKNLRDKLGAEG--RRIRTVWGIGYRLE 245


>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 279

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 55  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGL--PELDGLE 112

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 113 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 172

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +     +  V      L R E  +L  L    G+ + +  + + 
Sbjct: 173 ITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 233 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 275


>gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +             S    N+         +   D+  ++  L   G   L+
Sbjct: 10  LIVEDEPDLAQLLNEYMQAAQYSTTVINNGTDANDWLQANEVDIVLLDLML--PGMSGLD 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + R IR  S VP+I I+        L   + G DD + KP   RE+    +         
Sbjct: 68  ICRDIRKASDVPVIMITAKVEEIDRLIGLELGADDYICKPYSPREVVARTKAVLRRTLSD 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++  +   + +  +     V  +   L + E R+ + L    G+  ++  I   IY  
Sbjct: 128 TSSSEDQNQSVVLCEERSSVIVHKQEIELTQIEYRMFKLLFEQPGRIFSRQFIMDNIYTD 187

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   V +  V+SHI KLRKKL+      D + S    GY  +
Sbjct: 188 Y-RVVSDRTVDSHIKKLRKKLQAAAPEQDIIRSVYGAGYKFE 228


>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++     F ++G ++E         +  +    D   ++  L   G   L 
Sbjct: 6   LIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRML--PGLDGLA 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +RA     P+I ++   ++   +    +G DD + KP   +E+LARV A+ RR + 
Sbjct: 64  LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    R     G    L  RE +ILE+ +  + + + +T +   ++ 
Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+V+ HISKLR+++        + + R  GY I
Sbjct: 184 -YHFDPNTNIVDVHISKLRRQIDEGAEVPLITTVRGAGYMI 223


>gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ +G        G S++ F   +       SA  D   ++  L   G   +
Sbjct: 8   ILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTL--PGMDGM 65

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ +         P++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 66  DILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   +QG+  PL  RE  +LE  M N+ + ++++ I   +Y 
Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLY- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 185 NWDDEVSSNALEVHIHNLRQKL----GKQFIRTVHGVGYALGKN 224


>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 231

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         ++G ++E     +           D+  ++  L        
Sbjct: 5   ILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVML--PRRSGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           ++ + +R     VP++ ++    +   +    SG DD + KP         I A +    
Sbjct: 63  DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAP 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R  ++    + G I V     +    G+   L  RE R+L YL+ + G+ V +  + + 
Sbjct: 123 VRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G +    +   V+ H++ LR+KL         + + R LGY +
Sbjct: 183 VWG-YSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226


>gi|323351104|ref|ZP_08086760.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122328|gb|EFX94039.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324993744|gb|EGC25663.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 238

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHADGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         D G  +           +    + D+  ++  L       ++
Sbjct: 4   LLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVML--PSMDGIQ 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + IR     +P++ ++   S +  +   +SG DD + KP    E+  R+  + RR   
Sbjct: 62  LCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRAGG 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ +      R+      +D +   V+     L   E R+LE+ + N+ K +++ Q+  +
Sbjct: 122 NSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLLES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + D  +  NVV+ +I+ LRKKL +K     + +   +GY +
Sbjct: 182 VWDI-DFNLGTNVVDVYINYLRKKLDSKNPAKYIQTVFGMGYMM 224


>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 81/236 (34%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                  D+  ++      G   L+
Sbjct: 2   LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVM--MPGIDGLQ 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------------ 109
           + R++RA     P++ ++        +   D+G DD V KP    E+             
Sbjct: 60  VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 119

Query: 110 -----ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                       R  ++   + E   +R+    R          L R E  +LE L+ N 
Sbjct: 120 ALAAGPAEDVPARGPQLPERQIEAAGLRMDLQARRVWRGARELELTRTEFELLELLVRNA 179

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  + I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 180 GIVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPDAPQLIHTVRGVGYVL 234


>gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +       ++      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGL--PGIDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR +V 
Sbjct: 79  VCRQLRTFSDAYVVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVL 138

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +    R+  +  E   L R E  ILE L    G  +++ 
Sbjct: 139 QSATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 199 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 247


>gi|319648303|ref|ZP_08002520.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2]
 gi|317389938|gb|EFV70748.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2]
          Length = 257

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G              +    + D++ ++  L        
Sbjct: 32  IMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPA--YDGY 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR HS  P+I IS        +   ++G DD + KP  +  +        R A  
Sbjct: 90  YWCRQIRQHSTCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFG 149

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +K      E   +++F +  +   + E   L ++E ++LE L+    K  ++ ++  
Sbjct: 150 EYAVKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKESKLLEVLLERGEKVTSRDRLME 209

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   D  V+EN +  +I+++RKKLR+      ++S R  GY +
Sbjct: 210 KTW-ETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQL 253


>gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
 gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +          G+ G +++  +       L      DV  ++  L   G    
Sbjct: 3   LLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVML--PGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R +R   Q P+I ++    +   +     G DD + KP    E+LAR+ A + R  +
Sbjct: 61  NVLRELRRSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGRQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G ++V    R     G    L  +E  +L  L   RG+ ++KT I + ++ +
Sbjct: 121 QEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE  I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSNTNVVEVAIKRLRSKLDGPYPSKLLHTVRGMGYVLEV 221


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|145595407|ref|YP_001159704.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304744|gb|ABP55326.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++         +G  +                  D+  ++      G   L
Sbjct: 7   ILLAEDDPAIRRAVEQSLLLEGYHVVATGDGLEAIAAVRRDNPDLIVLDVM--MPGLDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R++RA     P++ ++    +   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 65  TVCRVLRAQGDWTPILVLTARTQVSNRVTGLDAGADDYLVKPFEPEELLARLRALLRRAG 124

Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S +              R+    R     G    L R E  +LE L+ N G  + +T I
Sbjct: 125 PSISPDSPAGEELAAAGVRLDLAARRVWRDGAEIILSRTEFDLLELLIRNCGVVLDRTTI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D       +   I  LR+KL      + + + R +GY++
Sbjct: 185 HDRIWG-YDFGTGSKNLSVFIGYLRRKLARPGAPEIIHTVRGIGYTL 230


>gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104]
 gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium 104]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   ++        +  + DV  ++  L       ++
Sbjct: 5   LVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGL--PDISGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        ++  D+G DD V KP    E      A V      
Sbjct: 63  VLAGLRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     ET    V    +     G    L   E  +LE L+ NRGK V + ++   ++
Sbjct: 123 SEMEQPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G    A E + +  ++++LR+KL  +      + ++  +GY  +
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLENDPSHPKHLLTESGMGYRFE 225


>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 233

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G  +   +  +           D+  ++  L   G   L
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLML--PGLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           ++ R++RA S   P++ ++        +   + G DD V KP        R       + 
Sbjct: 62  QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R   G + +    R    +G+   L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LTEPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + G+ +    +  V+  ISKLR+K  +       + +    GY  
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDNADEARKIKTVWGKGYLF 226


>gi|323484205|ref|ZP_08089574.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum
           WAL-14163]
 gi|323692080|ref|ZP_08106327.1| signal transduction regulator [Clostridium symbiosum WAL-14673]
 gi|323402447|gb|EGA94776.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum
           WAL-14163]
 gi|323503880|gb|EGB19695.1| signal transduction regulator [Clostridium symbiosum WAL-14673]
          Length = 240

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 17/234 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----------AREDVSAIE 50
           +  +I+D   +++       + G   EGF + E       S              +   +
Sbjct: 4   LIYVIEDDENIRNLICVALENFGHRSEGFETAEEALERLGSIMKRGKEAYRELPSMFIFD 63

Query: 51  AFLI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L    G   +   R +      P++ ++        +   D+G DD + KP    E+ 
Sbjct: 64  WMLPGMDGMTAIGKVRELEPLKGTPVLMLTAKDRETDIVMGLDNGADDYMTKPFGILELS 123

Query: 110 ARVAA---IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ARV         ++  +     G +++  + R+    GE   L  +E  +L YLM +  +
Sbjct: 124 ARVRNLLKRSGTVREESTCLAAGDVKIDKETREVVSCGEKVELTLKEFELLSYLMEHMNR 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V + ++   I+G +D   E   ++ HI  LR+KL++      + + R +GY  
Sbjct: 184 VVTRDELLDNIWG-YDYDGETRTLDMHIKTLRQKLKDAGQQ--IKTVRGVGYRF 234


>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 241

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +              + R D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVML--PDMDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R +R      P++ ++    ++  +     G DD V KP         +  +     
Sbjct: 75  TVTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 134

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + +   G + +  D  + +  G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 135 GGDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 195 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 237


>gi|291560891|emb|CBL39691.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F                       + D+  ++          +
Sbjct: 5   ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R+IR+    P++ ++        ++   SG DD + KP   RE+ AR+        R
Sbjct: 62  EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   + G      + E +I+E+L  + G+   K +I++ + 
Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQVC 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +   +   + ++RKK+ +    + +++   +GY 
Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221


>gi|317132810|ref|YP_004092124.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470789|gb|ADU27393.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +  G +  F ++G                   + D+  ++  L        
Sbjct: 4   ILLIEDDTDLAAGLLFTFQEEGFKTLHAACAAEARASFK-NKFDLVVLDIML--PDGNGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           +L + IRA S VP++ ++       T+   D G DD V KP      +    A + RR  
Sbjct: 61  DLCKEIRAFSDVPILFLTSCDDEANTITALDGGGDDYVTKPFKLDVLLSRIRAHLRRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +R+           +   L   E R+L  L  N G  + + Q+  A++  
Sbjct: 121 QPPQAPFCGGVRLDDAQGRAFAAEQDLRLTLTEYRLLSLLTRNAGLILKRGQLLDALWDG 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             + V++N +  HI  LR+KL        + + R LGY ++ 
Sbjct: 181 KGDFVDDNTLSVHIRHLREKLSTAGSGVSIRTVRGLGYRLEE 222


>gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KG 57
           M   ++I+D   ++D      G +      F++         +   D+  ++  L G KG
Sbjct: 1   MIKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKG 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-Y 116
            + L++ R  + +S VP+I IS   + Q  ++  + G DD + KP   + ++A++ AI  
Sbjct: 61  MQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILR 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   + +       I + ++     V GE   L  +E  +L+ L+ +  +   + QI +A
Sbjct: 121 RNPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G ++  V    V++H+S LRKKL  +     + S   +GY 
Sbjct: 181 VWG-YESDVYTRTVDTHVSSLRKKLGTRGS--FIKSVPKIGYR 220


>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Acidovorax ebreus TPSY]
 gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  RA S   Q+P++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 66  LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++    G + + +       QG+   +   E ++L YLM +  +  ++ Q+   I
Sbjct: 126 APEQVSDSVSIGELVLDAATYRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVGGA--MVETVRGAGYRL 225


>gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 252

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        D G++     +             D+  ++  L       L
Sbjct: 23  ILVVDDDSQIRSLLCDCLADFGMTTAQAGTGAEMHLALGEGGFDLVVLDLMLPDD--DGL 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA S++PLI ++    +   +   + G DD + KP   RE++AR+  I RR++ 
Sbjct: 81  NLCREIRATSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRRVRA 140

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
                          G      G           PL   E R+L   +A  G+ +++  +
Sbjct: 141 QTQGRTRAQEESRFAGWRLHQIGRHLIAADNTVIPLSNAEFRLLNAFLAAPGRVLSREYL 200

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
                G       +  ++  IS+LR+KL  +      + + R  GY +D 
Sbjct: 201 MDTARGKS-IDTFDRSIDVQISRLRQKLREDIKEPRLIRTIRGEGYMLDV 249


>gi|66044378|ref|YP_234219.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255085|gb|AAY36181.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969196|gb|EGH69262.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ]
 gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ]
          Length = 219

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +G       +G +++                 D+  ++  L       L
Sbjct: 3   ILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGL--PRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +RA     P++ ++   +    +   D+G DD + KP    E+ AR+ A + R  
Sbjct: 61  DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I++    +    QG    L R+E  +L  L+A  G+ + + ++  A+YG
Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + E VE N +E H+  LR+K       + + + R +GY +D 
Sbjct: 181 -WSEEVESNALEVHVHHLRRK----FFPELIRTVRGVGYMVDK 218


>gi|258544229|ref|ZP_05704463.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826]
 gi|258520543|gb|EEV89402.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G+  E  +      +L S+   D + ++  L   G   +
Sbjct: 3   ILIVEDDRELAQSLANVLQEAGMIAETAHDGNEAAFLGSTETYDAAVLDLGL--PGMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
            L    R   Q  P++ ++        L  F++G DD + KP  H   +L   A + R  
Sbjct: 61  SLLTHWREQGQTYPVLILTGRSRWSDKLAGFNAGADDYLTKPFLHEEVVLRLRALLRRSR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G +   +      + G    L  +E RIL YLM   G  V++ +I   +Y 
Sbjct: 121 GHADTTLHVGSLSYDTLQARFHLDGRRLTLTAQEERILAYLMHQPGTVVSRGEILEHVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N ++  IS++R+KL        + + R  G+ +
Sbjct: 180 ARDSDPDSNTLDVLISRIRRKLGVP----LLHTIRGRGFML 216


>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++     F  DG  +      +    L +    ++S +   ++        
Sbjct: 9   LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR +S VP+I ++       TL  F+ G DD V KP           R+     + 
Sbjct: 69  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL  LM ++ + +++ Q+ + I+G
Sbjct: 129 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITNIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 189 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 228


>gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
 gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
          Length = 240

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD + +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    TG             +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPTGATPASSLRRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVY-NDQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
 gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
          Length = 239

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3
           str. Ether]
 gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28]
 gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L       L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 234

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + +      G  G  +    +      +    +  V+ ++           +
Sbjct: 6   LIAEDDGDIIEILSLYLGGSGYEVRAARNGADALEILRREQVAVALVDIM--MPKMNGYD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +  RA SQVP+I IS        +   D+G D  + KP    E+ A + A+ RR    
Sbjct: 64  LIKAARAESQVPIIIISARAEAADKIIGLDAGADGYITKPFDPLEVTAYIRAVLRRGGSH 123

Query: 123 NN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +           R + G +   ++       GE   L   E RI+  LM+  G+   K 
Sbjct: 124 GHATQSLSGRGDGRIQVGDLEFDTERLCLAKGGEPIALTAAELRIVAALMSRPGRIFTKA 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+++ + G   ++   N V  HIS +R KL +       + + R LGY ++
Sbjct: 184 QLYACVNGRPCDSG-ANSVMVHISNIRAKLEDDPLSPRFIKTVRGLGYRLE 233


>gi|308068218|ref|YP_003869823.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305857497|gb|ADM69285.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 239

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D    +   +G   ++   + +    +   +  DV  ++  L        
Sbjct: 7   LIVDDEQGLRDMLTTVLKKEGFLQVKHAATGQEALQVVMESHMDVIVLDVMLPDS--DGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R ++  P++ ++   +    L  F  G DD + KP +  E++AR+ A  +  KV
Sbjct: 65  EVCRQMRLYTDAPILFLTARDTDLDKLMGFGIGGDDYITKPFNPLEVVARMKARMKYRKV 124

Query: 122 SNNRAETGPIRVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +     +               V+ +    P RE  +L +L  +  +  +  Q++
Sbjct: 125 PTVAMKPALRTLDFGYFRLELESGVLYVEDKQVECPAREWLLLVFLCKHPNRIFSVRQLY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            AI+       +E  V  HIS+LRKK+  +      + + R LGY +
Sbjct: 185 EAIWSEA-FLGDEKTVVIHISRLRKKIEPDPKHPQFLINVRGLGYKM 230


>gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +           +      D   ++  L   G   L
Sbjct: 7   ILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLML--PGIDGL 64

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R         P+I  S   S    +   + G DD + KP          + +  R  
Sbjct: 65  EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ R L++         + +    R+  +  +   L  RE  +L +   + GK  ++  +
Sbjct: 125 AMSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR KL  N    + + +   +GY  
Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGYKF 231


>gi|257792037|ref|YP_003182643.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257475934|gb|ACV56254.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +      +   +G       S          A  D+  ++  L G     L
Sbjct: 6   ILIVEDDADINALLAKIVAREGFGCVQAYSGTEALLQMERAAFDLVLLDMMLPGMDGPTL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                    S+VP+I +S        +    +G DD V KP    E+ AR+ A+ RR   
Sbjct: 66  MACMRDELASRVPVIVVSAKAGSADKVGMLAAGADDYVTKPFDPDEVAARIHAVLRRAAG 125

Query: 122 SNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVA 169
           ++  A  G +    +                        L   E  IL  LM +  K  +
Sbjct: 126 ASAAAGAGGVCPDDEALVHRDLRLDVARRRVTLGDAEVALTAHEFDILHVLMRSPDKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +  ++  ++       E+N V  H+S +RKKL    G  D + +   +G+ +
Sbjct: 186 RELLYELVW-KNGYYGEQNAVNVHVSNIRKKLAAAGGAGDYIKTVWGIGFKL 236


>gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 254

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +   ++         S       ++  L   G    
Sbjct: 22  LLVIDDDRKLCRLIKDYLEPMGYEIALAHTGPEGAEKAVSETFAAVILDVML--PGMDGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + IR  S VP++ ++        +   + G DD + K    RE              
Sbjct: 80  EVLKQIRRASNVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +RV    R   +  +   L   E  +L  L   +G+  ++ Q+
Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              I    +  V +  ++ HIS LRKKL +       + + R  GY +
Sbjct: 200 LDEI-AERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYML 246


>gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGL--PGISGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFNE 222


>gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R +R  S +P+I ++        L     G DD + KP   R         +     
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAR 127

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E G + +  +      +GE   L   E  IL  L    G   ++  +
Sbjct: 128 RHAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDAL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 MDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 234


>gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +   A+   +G  +    + +    L +S   D+  ++  L       +E
Sbjct: 8   LIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSHVPDLILLDLGL--PDIDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + + +R  S+ P+I +S     +  +   D G DD + KP          R  +      
Sbjct: 66  ILKNLRQWSKTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMRHSPQA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    +   G + +    R     GE   L   E ++L  L  N GK +    I  
Sbjct: 126 AGTEVWGEEKVTIGKLAIDYGKRTVYKAGEKIHLTPIEYKLLVLLSKNAGKVLTHDFIIR 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G++ E  E + +  +++ +R+K+  N      + ++  +GY +
Sbjct: 186 EIWGVYTE--ESHTLRVNMANIRRKIEANPGAPQYILTEMGVGYRM 229


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +E             S   D+  ++  L       LE
Sbjct: 5   LLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGL--PEMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA     P++ ++       T+   D+G DD V KP    E+           + 
Sbjct: 63  VARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +R+ +D R   +  +   L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 121 TSETPVVQGVRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGFRFE 220


>gi|228993584|ref|ZP_04153492.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228766175|gb|EEM14821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G      ++ +      +  +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVADNFDDIMDSFNRVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     +   L ++E  + E L++   +   +  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGTKQVLLTKKEAILAEMLLSKHPRTANREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus
           16]
 gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus
           16]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  + G  +             D+  ++      G+   
Sbjct: 6   ILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIM--MPGDDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  SQ+P+I ++        +   + G DD + K    RE+LAR+  I RR ++
Sbjct: 64  TLCQKLRRDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQL 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        +R      D   +        +V  L   +  +L   + N    +++  I 
Sbjct: 124 NPQTQLARKVRFDDWSLDTVTRQLTRLEDHQVKQLSGADLSLLGLFVNNAKSILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227


>gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +      ++    +  +   ++      +
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATN-PGIDLMILDIMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ + +R  SQVP++ +S   +    +    +G DD V+KP +  E++A      R +  
Sbjct: 62  EVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRSQQ 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +V +       +          + G+   L   E  IL  L ++  +  +   IF 
Sbjct: 122 QVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            ++   +  V    V  H+S LR K+     G   +++   +GY ++ 
Sbjct: 182 RVW-KQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEV 228


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPSGYQKDIQTVRGIGYIL 220


>gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 244

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 85/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD   +++    L   DG  +    +             D+  ++      G   +
Sbjct: 20  ILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKAD-HTIDLIILDVM--MPGCSGV 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  S  P++ ++     +   + F +G DD + KP    E+ ARV A+ RR  V
Sbjct: 77  EACGEIRKKSSAPILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAMLRRYCV 136

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +  T           +F+D  +    GE   L   E RIL  L  NR K      I+
Sbjct: 137 YKGKKGTEREVISLPGLEIFADTEEVIKNGERVLLTDIEYRILLLLAENRKKTYTTQDIY 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            A++         N V  HI  LRKKL +       + +    GY ID
Sbjct: 197 EAVWNEPFLFSSNNTVMVHIRNLRKKLEDDPQNPRCIRNVWGKGYRID 244


>gi|237794074|ref|YP_002861626.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263707|gb|ACQ54740.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  KLLSNIRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N      ++        D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +    +N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWS-SEYLCNDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 247

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  ++  +       +    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLAELMSMGLQMAGWDVQVAHDGNEALKIAREYRPDVLVLDIML--PGFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR     +P + ++   ++Q  +    +G DD V KP    E+L R+  I +R  V
Sbjct: 83  LLGKIRLFAPNIPALFLTAKDAVQDRVAGLTAGGDDYVTKPFSMEEVLLRLHRIVQRAGV 142

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +    +       D R      +   L   E  +L YLM N  + ++KTQI   ++
Sbjct: 143 IAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLRYLMENPKRVISKTQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+        + + R  GY +
Sbjct: 203 -NYDFGGQVNIVELYISYLRKKIEAN-HPPMIHTVRGAGYIL 242


>gi|121607345|ref|YP_995152.1| two component heavy metal response transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121551985|gb|ABM56134.1| two component heavy metal response transcriptional regulator,
           winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G +++   +    + L      DV  ++A L   G    
Sbjct: 3   ILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAML--PGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + R +R   Q P+I ++    ++  +     G DD + KP    E+LAR+ A   R   
Sbjct: 61  SVLRSLRILKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G +++    R          L  +E  +L  +   +G+ ++KT I   ++ +
Sbjct: 121 QEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 -NFDSNTNVVEVAIKRLRAKIDAPFSQKLLHTIRGMGYVLE 220


>gi|325675782|ref|ZP_08155466.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325553753|gb|EGD23431.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 218

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G ++              +   D+  ++  L   G   LE
Sbjct: 2   LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECEAFGPDLVVLDVML--PGFDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120
           + R I+A   VP++ ++        +     G DD       +                 
Sbjct: 60  VCRRIQASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + +    R     G    L R E  +L +L +     +A+  +   ++G 
Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D       V+SH+  LR+KL    G D + +   +GY+++ 
Sbjct: 180 GD-GASSRTVDSHVKALRRKL----GGDVIRTVHGVGYALEV 216


>gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 239

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +      +  D+G +     S++    + +  + D+  ++  L        
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINL--PDGTGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + +R  SQVP+I  S   S    ++  D G DD + KP   +E+++R+ +I RR   
Sbjct: 69  SFCKELRHTSQVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYG 128

Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++              I +    R          +  +E  +L Y+  NRG+ + K QI
Sbjct: 129 VDDNKSEMLTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            SA++GL+   VE + V  H+  LR+KL  +      + +    GY +
Sbjct: 189 MSAVWGLY-SDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235


>gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   +G              +       +  I+          L
Sbjct: 6   ILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGNVVHLIMIDIM--MPKMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +     G DD ++KP + +E++ARV A  RR   
Sbjct: 64  AAVMKIRETNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYMR 123

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                              +    ++  V GE   L   E +I+E LM+N G+     +I
Sbjct: 124 LGAMNSESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++     +VE N V  HI ++R+K+  N      +     +GY I+ +
Sbjct: 184 YERVWQEPAYSVE-NTVMVHIRRIREKIEINPKQPKYLKVVWGIGYKIEKD 233


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 24  LVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIML--PDFDGLE 81

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           + R IR     VP++ ++   +++  +    +G DD V KP    E++AR    +     
Sbjct: 82  VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 141

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++  E G +R+  D  +         L   E  +L YLM N  + ++K QI   +
Sbjct: 142 HAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 202 W-NYDFGGQDNIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 242


>gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 218

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +  +      +L  +   D   ++  L   G   L
Sbjct: 3   ILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGL--PGRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + +  R+     P++ ++    L   ++  ++G DD + KP    E++ARV A + R  
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +R+         +G    L   E R+L YLM +RGK V+++++   IY 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + N VE  I ++RKK       D +++ R LGY I+ 
Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRINE 218


>gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         D G +++     E   ++  +   DV  ++  L       + 
Sbjct: 4   LVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGL--PKMDGVT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R  +A    P++ ++        +  FD+G DD + KP H  E+LAR+ A   R   
Sbjct: 62  VLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E G + + + G    + G    +   E R+L YL  ++ + +++T++   IY  
Sbjct: 122 HTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GTDRIETVRGLGYRL 216


>gi|152996884|ref|YP_001341719.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837808|gb|ABR71784.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +   A     G      +  +       + + D+  ++  L   G   +E
Sbjct: 5   LIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLML--PGLDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + + +R  S VP+I ++        L   + G DD V KP   REI+ARV A   R    
Sbjct: 63  ICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVELD 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 T    +  D      +G++  L   E ++L+ L+   G+   +  I  +IY   
Sbjct: 123 QAESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIY-AD 181

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
              V +  ++SHI KLRKK+       + + S    GY  + N
Sbjct: 182 SRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224


>gi|110635897|ref|YP_676105.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286881|gb|ABG64940.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 233

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +          SS    ++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLSSRPPSLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  + +P+I ++        L     G DD V KP   R             + 
Sbjct: 62  ELLRRLRQKTDLPVIFLTSKDDEIDELFGLKMGADDFVRKPFSQRLLVERVRAVLRRASA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +     +   E G + +  +      + E   L   E  IL  L    G   ++ 
Sbjct: 122 RENGAKAPDKQSRSLERGHLVMDQERHTCTWKDEPVTLTVTEFLILHALAQRPGVVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDGEFDMIETLYGVGYRF 230


>gi|330505347|ref|YP_004382216.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01]
 gi|328919633|gb|AEB60464.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G      +       L  +   D++ ++  L        
Sbjct: 4   ILIVEDEAAIADTLVYALQAEGFVTRWSSLGGEALMLLENDAFDLAILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRVAP 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 +     ++          G+   L R E R+L  L+    +  ++ Q+  A+ G
Sbjct: 122 REAPAASAPSIFQIDDAAFRIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL-G 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  EA  E  ++SHI  +R KLR      +P+ + R LGYS +
Sbjct: 181 VASEAGYERNIDSHIKSVRAKLRAIAPSEEPIQTHRGLGYSYE 223


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+             ++E  N  +    L  +   D+  ++  L       +
Sbjct: 3   ILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVL--PKLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR+  +  P++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V++    E G +R+     +   Q +   L  +E  +LE LM N  +  +   I   ++ 
Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   E+  V +HI  LR KL+      D V++   +GY +
Sbjct: 181 YEDTPGED-AVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 3    VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++ DD  + +     L    G  +   +S +           DV  ++  L+  G    E
Sbjct: 1077 LVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLD--LVMPGMNGWE 1134

Query: 63   LPRIIRAHSQVPLIGISDY 81
                ++  S    I I   
Sbjct: 1135 TMAGLKKCSDTKDIPIVIC 1153



 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD     +    L    G+ +   N  E           D+  ++      G   +
Sbjct: 384 ILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDI--EMPGMSGI 441

Query: 62  ELPRIIRAHSQ 72
           EL ++IR+H Q
Sbjct: 442 ELCKMIRSHDQ 452



 Score = 39.7 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL 38
             ++I+D   + D    LF    +      +      L
Sbjct: 1206 ILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHL 1242


>gi|260467116|ref|ZP_05813295.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029128|gb|EEW30425.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 239

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + +      +    D+  ++      GE  +
Sbjct: 20  LLVVDDDTRIRNLLKQYLTENGFRVTVAGNADEARRKLAGLDFDLLVLDVM--MPGESGV 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + +RA   VP++ ++      + +   ++G DD + KP   RE++ R+  I RR   
Sbjct: 78  DLTKSLRAEKNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRRGGP 137

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       R+ +  GE   L  RE+ IL    A  G+ + + ++    
Sbjct: 138 ATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHELV--- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 195 --GDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRL 236


>gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        D    +               +  +  ++       +  +
Sbjct: 5   ILIVDDDKEIRDLISLYLEADRFYTDKAADGVEALIKLEEKKYSLVILDIM--MPKKDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   ++P+I ++        ++    G DD ++KP    E++ARV A  RR  +
Sbjct: 63  ETIIEIRKKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRYTI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ++   IRV      ++  +  V+G    L   E +ILE +  NR K     +++  
Sbjct: 123 LNLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELYEF 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+     +V +  +  HI+KLR+K+       + + +   +GY I
Sbjct: 183 IWKEK-YSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGYKI 226


>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 228

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +   ++             D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  I        + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           +G +D   + N V  HI K+R K ++  +  + + +   +GY  +
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225


>gi|146282012|ref|YP_001172165.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145570217|gb|ABP79323.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
 gi|327480260|gb|AEA83570.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 238

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G   +   +            R D+  ++  L   GE  
Sbjct: 8   ILIVEDDRRLAELTQEYLHGNGGFEVSIESDGACAVERIIEERPDLVVLDLML--PGEDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R     P++ ++        +   ++G DD V KP+  R +LAR+ A+ RR +
Sbjct: 66  LSICRRVRDRYDGPILMLTARADDLDQVLGLETGADDYVCKPVRPRLLLARIRALLRRRE 125

Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +          + S  R+  ++     L   E  +L  L +N G+ +++ +IF+ 
Sbjct: 126 AEVPASAKRLQFGPLVIDSALREAWLREHQIELTGAEFDLLWLLTSNPGRILSREEIFAQ 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + G+ +   ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 LRGI-EYDGQDRSIDVRISRIRPKIGDDPDHPRLIKTVRGKGYLF 229


>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
 gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  ++             S   D+  ++  L        
Sbjct: 4   ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLML--PQLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R   ++P+I +S        +   D G DD + KP    E++AR+ +  +R   
Sbjct: 62  EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYER 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S        + + +      V G+      +E  +L +  +N     +K +IF 
Sbjct: 122 LTGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERIFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  +   +   V  HI K+RKK+  +    + +++    GY  +
Sbjct: 182 LLWGA-EYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFN 227


>gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator
           [Acidiphilium cryptum JF-5]
 gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           ++G + +     E           D   ++  L        E
Sbjct: 4   LIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIML--PRRNGFE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +   IR   SQ  ++ ++    +   +   ++G DD + KP    E+LARV  I  R   
Sbjct: 62  ILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGHA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +   G      G+   L  +E R+L  L    G  +++T I   ++ +
Sbjct: 122 RQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+ H+ +LR KL +      + + R +GY ++
Sbjct: 182 -NFDSGTNVVDVHMYRLRAKLDDPFSRRLIHTVRGVGYVLE 221


>gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++  G       +G        +   + +    + ++   +  L        
Sbjct: 3   ILLVEDDKIIASGLEYSLKQEGFDTMVCYDISSAKGVIEDNKFNLCLFDLSL--PDGSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +++R     P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 61  ELCKLVREKDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRYGK 120

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++         IR+ +             L   E R+L     N G+ +++ QI   I+
Sbjct: 121 DSSSKAILELNNIRINTLDAKVYKNDAEITLTALEYRLLLIFANNPGQVLSRNQILEGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +  + V +N +  +I ++R+KL +       + + R LGY 
Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLEDDPQKPTIIKTVRGLGYK 222


>gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 220

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L        
Sbjct: 3   LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGL--PTLSGF 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +  + S +P++ ++   + +  +   DSG DD + KP    E+ AR+ A + R  
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++E  E N +E HI  LRKK         + + R +GY ++ 
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSTLIRTIRGVGYLVEE 218


>gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
          Length = 227

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +G +++             +    +  ++  L   G+  L
Sbjct: 12  ILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGL--PGKDGL 69

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + I    +  P++  +   ++   ++  D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 70  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +    R+    GE   L  +E  +L  L    G  +++ Q+   +Y 
Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLY- 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +  N +E HI  LRKKL        + + R +GY ++
Sbjct: 189 NYESLIGSNAIEVHIHHLRKKLSEDS----IKTVRGVGYVLE 226


>gi|323142343|ref|ZP_08077175.1| response regulator receiver domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413227|gb|EFY04114.1| response regulator receiver domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 228

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   + +  +      G+  +G +S      L      ++  ++  L    G  
Sbjct: 1   MIFCVEDEQNICELEVYTLQSVGMEAQGCSSGRELFALLEKQVPELIVLDIMLPDEDGVS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R  + +S +P+I  +   S    +   DSG DD + KP    E++AR+ A+ RR 
Sbjct: 61  ILRRLRADKRYSNIPVIMATAKGSEFDKVKGLDSGADDYIAKPFGMLEMVARIKAVLRRC 120

Query: 120 KVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +                    V G    L  +E  +L   + + G   ++ ++
Sbjct: 121 AAPRRDEDDEETIRIGRLEVKQMEHKVSVGGSEVVLTLKEYELLRKFLQHPGIVFSRDKL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + I+G ++ + E   V+ HI  LR+KL      + +++ R +GY +
Sbjct: 181 LNDIWG-YEFSGETRTVDVHIRTLRQKLGEAG--ELIETIRGVGYRM 224


>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 233

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  ++  ++           L  S   D   ++  L        
Sbjct: 3   ILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVML--PELDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R +R  + + P++ ++   S++  +   + G DD + KP    E    +  +     
Sbjct: 61  EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R      +     + +     +      V  L  +E  +LEYLM + G+ + +TQI  A+
Sbjct: 121 RTFEVATQLRADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D     NVV+ +I  LR K+        + + R +GY ++
Sbjct: 181 W-RYDLEALSNVVDIYIHYLRDKIDQGFTRPLIKTVRGIGYKLE 223


>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 232

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G   E            +     D++ ++  L   G   
Sbjct: 8   ILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIML--PGMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           LE+ R  R  +  P+I ++        L   + G DD + KP   RE++ARV  +  R  
Sbjct: 66  LEVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  A+  P+ +        ++G    L  RE R+L+ L ++ G+  ++ Q+    Y 
Sbjct: 126 ARPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
                V E  ++SHI  LR+KLR   G D   + S   +G+S++
Sbjct: 186 DT-LDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLE 228


>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
           protein (C-terminal) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 224

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G   E  ++             D   ++  L   G   +
Sbjct: 3   ILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLML--PGIGGM 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           +L + I+  + Q+P++ ++        +   + G DD + KP + R     + +      
Sbjct: 61  DLCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRRTT 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +       TG I++        V+G    L   E ++L+    N G   ++ ++   
Sbjct: 121 DPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKLLQLFAGNPGVAFSRDKLLDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  D  V +  V+ +I +LR KL      + +++ R +GY  
Sbjct: 181 IWGK-DVFVTDRTVDVNIKRLRDKL--LSEKERLETIRGVGYRF 221


>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
 gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
          Length = 227

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   + DG        G +++   +++    L  S   D+  ++  L        
Sbjct: 4   ILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTL--PDGTGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ + +R+ S +P+I ++      + +   D G DD + KP    E    +  +     +
Sbjct: 62  DVCKEVRSSSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRRSLQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   IRV ++ R     GE   LP  E ++L   M N    + +  I   ++
Sbjct: 122 FSKAETILEANGIRVDTNERLVWKNGEPVDLPLVEYKLLCLFMKNPNHLMPREMILDRMW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
                 V++N +  +I +LR K+ +       + ++R +GY 
Sbjct: 182 DGNGNFVDDNTLSVYIRRLRNKIEDTPNAPKYLLTERGIGYK 223


>gi|152985885|ref|YP_001350928.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150961043|gb|ABR83068.1| two-component response regulator [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVVEDDAKTGEYLKKGLGESGYAVDWSRHGADGLYLALENRYDLVVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+  + RR  V
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +    R    QG++  L  +E  +L  LM   G+ +++T I S ++ +
Sbjct: 121 REAEQVQLADLHLDVLRRKVSRQGQLIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+ N      + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEE 221


>gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +  S   DV  ++  +       +
Sbjct: 3   LLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPA--LSGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     VP+I ++   +L+  L   ++G +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQLRSRT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G    L  +E  +LEYL+ N+ +   +++I   ++ +
Sbjct: 121 QGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +I+ LR+KL      + + + R +GY I
Sbjct: 181 H-FDADTSVIDVYITFLRRKLEAVGCNNFIQTIRGIGYII 219


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         D+  +++     E      ++   D+  ++  L       +E
Sbjct: 4   LLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVML--PKLNGIE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120
           L + +R      P++ ++   S    +   D+G DD V KP      +    A + R   
Sbjct: 62  LCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGNT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G +R+         + ++  +  +E ++LE  + N G  +++ QI   ++  
Sbjct: 122 TISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWSS 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
            D   ++  V+ HI  +R+KL+      D +++   LGY ++ N
Sbjct: 182 IDPPGQD-TVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224


>gi|87119340|ref|ZP_01075238.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
 gi|86165731|gb|EAQ66998.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G      +  +         + D+  ++  L   G   +
Sbjct: 4   ILIVEDEPKLAELLTAYLAQSGYESHHLDRGDIVIDYLKQNQVDLILLDLML--PGLDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I ++        L   + G DD V KP   RE++ARV A  RR+  
Sbjct: 62  EICKQVRLFSNIPIIMLTAKAEEIDRLLGLEMGADDYVCKPYSPREVVARVKANLRRVSF 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                          D      +GE+  L   E ++L+ L++  G+   +  I   IY  
Sbjct: 122 DQVEEPKTEGFELDVDRLRVTYKGELIDLTTVEFQLLQLLISEPGRVFGREIIMKRIY-T 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
               V +  ++SHI KLRK++       + + S    GY  + N
Sbjct: 181 DSRVVSDRTIDSHIKKLRKRISMVAPELNVIHSVYGAGYRFENN 224


>gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 242

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G ++      +       +   D+  ++  L   GE  L 
Sbjct: 5   LIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLML--PGEDGLS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA + +P+I ++   S    +   + G DD + KP   RE+LAR+ A+ RR    
Sbjct: 63  LCRHLRATTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLRRAGQM 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV---------------FPLPRRERRILEYLMANRGKR 167
              A   P          E  G                   +   E  +L   + +  + 
Sbjct: 123 MQSAPREPTPADEPVEILEFSGWHLDVSRRRLTSPDGVLAEITSGEFDLLLAFLRHPHQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++ Q+     G       +  ++  + +LR+K+  +    +   + R  GY +
Sbjct: 183 LSRDQLLDLARGRV-SGPFDRTIDVQVGRLRRKMETDPKTPELFKTVRGGGYVL 235


>gi|327439712|dbj|BAK16077.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        DG  ++   S +       S   D   ++  L     + +
Sbjct: 5   ILVVEDDENLVNLLHIYLVKDGYEVQCVRSGKEALAAIQSFEPDAMLLDWML--PDMEGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I IS        +   + G  + + KP   RE+L R+    +R + 
Sbjct: 63  EICRQVRFDHDFPIIMISARTDELDIVLALEMGATEYIRKPFGFREMLTRLRIHLKRYER 122

Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + E           V              PL +RE ++L +L+   G   ++ +I +
Sbjct: 123 ELQQQERISQMLIGPFRVDLIMFKVYKDEVEIPLTKREFKLLLHLLEQPGSIKSREEIIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            +        +   V+ HI +LR+K+         + +K  LGY  ++
Sbjct: 183 IL---DFTKGDRRTVDVHIRRLREKIEEQPSSPKWIKTKSGLGYYFNF 227


>gi|239625973|ref|ZP_04669004.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520203|gb|EEQ60069.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 224

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +    A+   +G +    +S E    L  S   D++ ++      G    
Sbjct: 4   ILIAEDDKNTRKLMEAVLKSNGFNPIPASSGEEALKLLDSHHIDLAVLDIM--MPGMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R+     P++ ++     +     F +G DD + KP+   E++ R+ A+ RR +
Sbjct: 62  ELTTQLRSMDYNLPILMVTAKLLPEDKRKGFMAGTDDYMTKPVDEEEMVLRIRALLRRAQ 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ R  T    +   D       G    LPR+E  +L  L++  GK   + Q+   I+G
Sbjct: 122 IASERKITIGNVILDYDSLSVTRDGSSQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +   ++N +  HI++LRK+  +   F  +++ R LGY 
Sbjct: 182 I-ESETDDNTINVHINRLRKRFEHYPEFT-IETIRGLGYK 219


>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
 gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 245

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 13  ILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLM--MPGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 71  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRP 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R     GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 131 TAEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +         + +   +GY  
Sbjct: 191 KLAQLARGR-EFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVF 239


>gi|89892848|ref|YP_516335.1| hypothetical protein DSY0102 [Desulfitobacterium hafniense Y51]
 gi|89332296|dbj|BAE81891.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 256

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G +++        +   ++    V      ++  G+   
Sbjct: 32  ILVVDDDPEIREIIHILLQREGFAVQV---AADADTALATLTPGVDLAILDIMMPGKSGF 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  + +P++ ++         + F  G DD + KP    E+++RV A+ RR  +
Sbjct: 89  ELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLI 148

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +              +  D       GE   L   E ++   L+ NR K  +  +I+
Sbjct: 149 YQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIY 208

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+      +  N +  HI  LR+KL   +G    + +    GY I+
Sbjct: 209 EHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE 256


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G +     + E    + +  R  D+  ++  L   G   
Sbjct: 5   ILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLML--PGVSG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R       +P+I ++        +  F++G DD V KP   RE++ R+ AI R
Sbjct: 63  IEVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILR 122

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++            G ++V  +G    V GE   L   E ++L   ++ +G+   +  +
Sbjct: 123 RVQPEQAESAALVTFGRLKVDLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G+ +  V+   V++H+ +LR+KL        +++ R +GY  
Sbjct: 183 LNDVWGV-NAFVQTRTVDAHVKRLREKLGPAG--KYMETIRGVGYRF 226


>gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 224

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      D+  ++  L        
Sbjct: 3   LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNL--PEIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+    R        
Sbjct: 61  TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221


>gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
 gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    ++  S I   ++       +
Sbjct: 5   LIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  + VP++ ++     +  +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLQEIRKKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYTTL 124

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   +Q     L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A +++ + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-AEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGYRFNK 231


>gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219]
 gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   L    + +    +    + D+  ++          +
Sbjct: 4   ILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIM--MPIMDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR +  +P+I +S     +  ++    G DD + KP H  E++AR+ A  RR K 
Sbjct: 62  KATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKE 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ +   + +          +   V G+   L   E  IL+Y + N  K +    I+ 
Sbjct: 122 LGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            ++   +    E+ +  HI  LR+K+  +      +      GY 
Sbjct: 182 EVW-KEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225


>gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D A + +   A   + G  ++  ++ +           D   ++  +   G+  L 
Sbjct: 4   LFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMV--PGKDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           + + +R   +  P+I ++    L   L   + G DD + KP    E++AR+   + R + 
Sbjct: 62  ILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    G +++    R+      V  L  RE  +LEYLM + G+   +TQI   ++G 
Sbjct: 122 DRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+  I ++RKK+        ++S R +GY  
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPVDEAGWIESIRGVGYRF 220


>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
 gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R +   +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQA 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTQQEEEITFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 222

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +  I     +   +    +      +    + D+  ++  +       +
Sbjct: 5   ILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPL--LDGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  +II+    Q  LI ++      + +  F+ G DD + KPI  R +L+R+ A +R+ K
Sbjct: 63  EAGKIIKTEQPQTHLIYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQAYFRKEK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       V +         +  V  LP++E  IL +L ++  K  ++  +   I+
Sbjct: 123 SQEKNVLEISGLVINKQNYSVTTEDGSVKVLPKKEFEILYFLASHPNKVQSRDSLLQKIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G     VE   ++ HI K+R+K+ +K     + + + +GY  +
Sbjct: 183 GTDIYVVE-RTIDVHIRKVREKIGDK----YIGTLKGVGYMFN 220


>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 235

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +   ++ +         +  ++ ++  L        
Sbjct: 5   LLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIML--PEMDGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR  +  +P++ +S   +    +     G DD + KP    E+ ARV A  RR +
Sbjct: 63  TLCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYR 122

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +    +     F        + +   + G+   +  +E  +L+ +  N  K  +K ++
Sbjct: 123 KMDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  ++   D     N V  HI +LR+K+ +       + +    GY  
Sbjct: 183 YHHVWDSIDLDGN-NTVTVHIKELREKIGDSSKNPIFIQTVWGTGYKF 229


>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 240

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   + +P+I ++        +   + G DD + KP + RE        +  R 
Sbjct: 66  SICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             E G  ++    R+     +   L   E  +L+ L+ +  + +++ +
Sbjct: 126 SEAPGAPSKDVQIVEFGDYKLNLATREMTAGDKPLTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N      ++        D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++       ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWSSK-YLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 260

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     +Q+P++ ++     +  +  F+SG DD + KP    E+LARV A+ RR  
Sbjct: 65  CQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRRSD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   ++   I  F       +  +     +   L   E  +L  L+   G+ VA + I 
Sbjct: 125 RAPLSSKHSEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 11/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   V     A+ G  G   E   +         S   D+  ++  L       
Sbjct: 2   LLLIVEDDDHVASALAAVLGRHGFDTERARTGAQALEAL-SHDPDLVLLDLGL--PDTDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R +R     P++ ++     +  +   + G DD V KP    E++AR+ A+ RR  
Sbjct: 59  FDLCRRMRQRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARRSA 118

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       GPI V  D R+  V G    L R+E  +L  L    G   ++ QI S 
Sbjct: 119 PRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQILSE 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++        +  +E H++ LR KL      D V + R +GY +
Sbjct: 179 VWSTH-WQGSQRTLEVHVASLRTKL---GLPDAVQTVRGVGYRL 218


>gi|77459846|ref|YP_349353.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383849|gb|ABA75362.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 224

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L      D+  ++  L        
Sbjct: 3   ILVVEDELKAAEYLHQGLTESGYIVDHAVNGADGLHLAQQQVYDLIILDVNL--PELDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            +   +R      ++ ++    L   +   D G DD + KP    E+    R        
Sbjct: 61  SVLEQLRRTHSTRVMMLTARGRLADKIRGLDLGADDYLVKPFEFPELLARVRTLMRRSEN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   + +           +   L  +E  +L  LM   G+ + +TQI S ++ 
Sbjct: 121 IPVPQVLKVADLELDPGRHRAFRGTQRIDLTTKEFALLHLLMRQSGEVLTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDSKLIHTLRGVGYVLE 221


>gi|330973443|gb|EGH73509.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 267

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPNDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
          Length = 222

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G      +       +  S   D+  ++           
Sbjct: 4   ILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIM--MPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +I R  S +P+I ++   S    L  +D G DD + KP   + +LA+  A+ RR  +
Sbjct: 62  SVCKIAREMSNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSL 121

Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                                V G+   L  +E  +L + M N  +  ++ Q+ + I+G 
Sbjct: 122 LPADTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D       V++HI  LR+KL ++     + +    GY  + 
Sbjct: 181 YDFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 220


>gi|170755846|ref|YP_001781047.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169121058|gb|ACA44894.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         +         + ++  ++  L        
Sbjct: 5   IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS   S    +   +SG DD + KP ++  +LA++ +  RR+  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174
                      +  +G     +       R+E  +       L+ +M    +   + ++ 
Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKEGDLLDAMMKIYPRVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+      V+EN +  +I++LRKKL +    D +++ R  GY ++ 
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNV 229


>gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3]
 gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 QDVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +        +      L  S   D+  ++  +       L
Sbjct: 4   IMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMI--PCLSGL 61

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113
           E+ R     +S+ P+I ++   S+   ++  D G +D + KP +  E+LAR+        
Sbjct: 62  EVLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGA 121

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +      +      + V +  R     G+   L +RE  +L YL+ N+   + + Q
Sbjct: 122 LHTGKSENSKKHEYALADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + ++G F+ A + NVV+ +I  LRKK+ +      + + R +GY
Sbjct: 182 LLNEVWG-FEYAGDTNVVDVYIGYLRKKIDHGHETALIHTVRGVGY 226


>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 238

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D     F   G  +   +         ++   D   ++          +
Sbjct: 14  LLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVM--MPELDGV 71

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
           E+ R +R      P++ ++   ++   +   D+G DD + KP      H  + A +    
Sbjct: 72  EVCRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRSE 131

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     + +  + R     G    L R E  +LE LM N G+ + +  I   
Sbjct: 132 YDPVPESERLVFEDLELDPESRLAYRGGRTIELTRTEFALLELLMRNAGRVLPREVISDR 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++   E N +E  +S +R+K         V + R  GY++
Sbjct: 192 IWG-YELGPESNSLEVFVSCIRRKTEGGGEPRLVQTVRGFGYTL 234


>gi|228999620|ref|ZP_04159197.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229007167|ref|ZP_04164786.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228754082|gb|EEM03508.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228760146|gb|EEM09115.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G      ++ +      +  +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAVVADNFDDIMDSFNRVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +   +  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKHPRTANREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|225872589|ref|YP_002754044.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
 gi|225791970|gb|ACO32060.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 89/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D A +           G ++  +++              +  ++  +   G   L
Sbjct: 5   IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMV--PGGDGL 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
           ++ R +R H   S +P+I ++        +   + G DD + KP   RE+    +     
Sbjct: 63  DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +      + + +     +V+GE+      E R+L+YL  + G+  ++  +  A
Sbjct: 123 FERPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G     V    V+ ++ ++R+K+  +      + + R  GY  +
Sbjct: 183 VWG-DARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227


>gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis]
          Length = 229

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L  ++G  +    S +    +  + + D++ ++  L        
Sbjct: 4   ILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVML--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P++ ++        +     G DD + KP +  E+LARV    RR + 
Sbjct: 62  DVLQSIREKQFFPVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLRRYQT 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+++                + R   +  E   L   E  IL YL  N G+ ++  ++F
Sbjct: 122 YNSQSIDETNEYAKNGLNISVNSRKVFLYDEEIKLTPIEFDILWYLCRNEGRVISSEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             ++   D     N V +HI+K+R+K+       + + +   +GY+I+ 
Sbjct: 182 EKVW-KEDYLENNNTVMAHIAKIREKMHEKPRQPNIIKTVWGVGYTIEK 229


>gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family
           [Pseudomonas fluorescens Pf0-1]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G  ++     E      + AR D   ++  L   GE  L
Sbjct: 9   LLIVDDDGEILSLLKKFFVQHGYQVDVAAHGEAMWAAIAQARPDTIILDLML--PGEGGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +RA   +P+I ++    L   +   + G DD + KP   +E+LARV A+ RR+  
Sbjct: 67  SLCQKVRAQMGIPIIMLTAMAELSDRIVGLELGADDYLTKPFAPQELLARVRALQRRVGE 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE---------VFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          V +                   + P+   E  +L  L+ +  + + + Q
Sbjct: 127 NAPSGAEPSRPVMAFAGWHLDITCRELRSPEGVMIPMSAGEFDLLLVLLEHPQRILTREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +    +G   +A +   ++  IS+LR+K+       D + + R  GY  
Sbjct: 187 LIDLTHGQGHDAYD-RSIDVQISRLRRKIEPDSKRPDLIRTVRNGGYMF 234


>gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 242

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   + +         G            +    +   DV  ++  L G  G  + 
Sbjct: 8   LIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDTMLPDVILLDWMLPGQSGLSLA 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            L R       +P++ ++        +   D+G DD + KP   +E+    R     R  
Sbjct: 68  RLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRRAP 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +    G + + +       QG+   L   E ++L YLM +  +  +++ +   ++G
Sbjct: 128 ESQGDSVTVGALVLDAATHRIAWQGQDLKLGPTEFKLLHYLMKHPERVHSRSSLLDKVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 188 DH-VFIEERTVDVHVKRLREALGAAGA--MVETVRGAGYRL 225


>gi|313623681|gb|EFR93833.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           J1-023]
          Length = 228

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 HTTTENDEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTVWGVGYKFDE 226


>gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 227

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +         ++          L +S + DV  ++  L       ++
Sbjct: 5   LVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGL--PDMDGVD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117
           + + +R  + VP++ +S   + +  +   D+G DD + KP    E       +       
Sbjct: 63  VIKALRGWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRRTEAG 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +T    V    +     G    L   E  +LE L+ N G+ V +  +   +
Sbjct: 123 PTAPETTLVKTDDFTVDLTAKKAHRDGRDVHLTPTEWHLLEILVTNPGRLVTQRHLLQEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +G        N +  ++++LR+KL  +      + ++  +GY  + 
Sbjct: 183 WGASQSNK-TNYLRVYMAQLRRKLEADPSHPRYLITEPGMGYRFEE 227


>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +   +      E           D++ ++  L   G    
Sbjct: 4   ILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVML--PGIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
           ++   +R  + ++ +I ++        +   + G DD + KP +        + + R  A
Sbjct: 62  KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTA 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +K + ++    P  +    +          +  +E  +++  + N  K  ++ ++ 
Sbjct: 122 DESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           + I+G +D   +  +++ +I +LR K+ +     + +++    GY 
Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYR 226


>gi|225568375|ref|ZP_03777400.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
 gi|225162823|gb|EEG75442.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + +G        G   +   +    + L  +   D+  ++  L        
Sbjct: 4   IFLVEDDLSLINGLSFALKKQGYETDIARTSLEAQNLWGNEDYDLVILDVSL--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
           EL +IIR  S+VP+I ++        +   D G DD + KP         +  +      
Sbjct: 62  ELCKIIRRTSKVPIIFLTAADEETDIIMGLDIGGDDYITKPFKLAILLSRINALLRRSDN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +     +  I+V     +         L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNETTTELNSNGIKVKLLKGEVYKNESQLDLTASEYKLLCLFMENPDIVLSPEQILSKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
              ++ ++ + +  +I +LR K+ +       + + R +GY   WN
Sbjct: 182 DCDEKYIDSSTLTVYIRRLRTKIEDTPGQPQKILTVRGMGYK--WN 225


>gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+++        DG     F++             D+  ++  L        
Sbjct: 4   IMLVEDNTLIREAVAGYLQLDGHKTVEFDTGAGVLDAVRREIADLIILDVML--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            L + IRA S VP+I ++   S    +  F+ G DD + KP   +E++ RV         
Sbjct: 62  ALAKSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVQALLRRSGG 121

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A          +       + +      + G    L   E +IL YL  N G+ V++ Q
Sbjct: 122 SAETVPGASGEWQQGESRATLDTAKHTLAIDGIDVNLTGAEWKILVYLAENSGQVVSREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I S  +  +     E  V++HI+ LR KL    G   + + R  GY  
Sbjct: 182 ILSECF-NYFFEGSERTVDTHIANLRAKL----GVGWIVTVRGFGYKF 224


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +            +   NS      +      D   ++      G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVM--MPGMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++    +   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +        +         D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGETQLIHTVRGVGYVL 229


>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
 gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
          Length = 228

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++       + G ++    + +    L      D+  ++  L       LE
Sbjct: 6   LLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIML--PDISGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA + +P++ ++        +  F+ G DD + KP + RE++AR+ A+ RR+   
Sbjct: 64  VLRQLRAKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRRVAWD 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                           +P  +          L   E  +L+ L+A+ G  V KT +    
Sbjct: 124 QEVGMDDSRAYGDLRVEPVHRRIYQNDVALDLTATEYEVLQVLLAHAGSVVRKTDLMQWA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            G   EA +   ++ HIS LRKKL N      +++ R LGY
Sbjct: 184 LGRRLEAYD-RTLDMHISNLRKKLGND-DPPRIETVRGLGY 222


>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
 gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTQQEEEITFGEYSLNLATREMHHGEESIALTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|148547255|ref|YP_001267357.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511313|gb|ABQ78173.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 238

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L++D   A    +G  +   ++ E  E L +S   D+  ++  L   G+  L 
Sbjct: 6   LIVDDDPLIRDLLQAYLSQEGYDVHCADTAERAEALLASQDVDLVLLDIRL--PGKDGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S+V +I ++        +   + G DD V KP++ RE+++R   + RR++ +
Sbjct: 64  LTRELRVRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVAKT 171
                                                L   E ++L   + N G  +++ 
Sbjct: 124 REAHPAPACAQSLKQFADWALDTDRRRLIDARGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   I    +    +  ++  + +LR+KL  +      + +    GY  
Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232


>gi|325687024|gb|EGD29047.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 238

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 14  ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S VP++ +S        +   + G DD V KP  +   LA+V         
Sbjct: 72  HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D    G+V  L + E +IL  L  +    VA+  +   ++
Sbjct: 132 FGNDQSLLEYQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHADGIVARDDLMKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230


>gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   ++      F  +G  +              + R     ++  L   G   
Sbjct: 3   LILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLML--PGLSG 60

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
            E+ + I+A S   P+I +S    +   +   ++G DD V KP   RE+    + A    
Sbjct: 61  REVCKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRT 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R  V       G + V     +    G + PL   E ++L + + N G+ +A+ ++ S +
Sbjct: 121 RRTVQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +GL +  +    V++ I KLR+KL  +        +    GY  
Sbjct: 181 WGL-NFHLTTRTVDNQILKLRQKLEADPANPVHFRTVHGFGYKF 223


>gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 229

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++         +  +S   D+  ++  L        
Sbjct: 3   LLIVEDEVKAGEYLQKGLVESGYVVDWVRDGVDGLYHATSEPYDLILLDIML--PKLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R   
Sbjct: 61  QVLNTLRSSDIHTPVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHT 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S  +  +  +++         R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 SSRVQTSSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +   + NV++  I +LR K+        + + R +GY ++
Sbjct: 181 LVWDM-NFDSDTNVIDVAIKRLRNKVDKPFETPLIHTIRGMGYKLE 225


>gi|239638181|ref|ZP_04679133.1| heme response regulator HssR [Staphylococcus warneri L37603]
 gi|239596202|gb|EEQ78747.1| heme response regulator HssR [Staphylococcus warneri L37603]
          Length = 224

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +  +     +        + E       +   D++ ++  +   G    E
Sbjct: 5   LIVDDDPKILNYVVTHLEKEHFYTYTHTNGEEALHFLDNHPVDIAIVDIMMH--GMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +I+    +P+I ++   +L      F SG DD + KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCHMIKEVYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIYRIKAVLRRYHIH 122

Query: 123 NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T             V  G+   LP +E ++L  L +N  +  ++T +   I+G +
Sbjct: 123 ADETLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI +LR++L+       + + R  GY ++
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSDVTIKTVRGQGYKVE 221


>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
 gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ ++          + 
Sbjct: 7   LVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIM--MPRMDGIR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR ++ 
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRMF 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +                       +  V GE   L   E +IL  LM + G+  +  +
Sbjct: 125 AEKLRDREENQNIHVIGGLELNEATVEVSVDGEPVRLTPIEYKILLLLMKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+  ++   ++A+  + +  HI  +R+K+ +       +     +GY I+ 
Sbjct: 185 IYERVWN--EKAINTDTIMVHIRNIREKIESCPKEPKYLKVVWGVGYKIEK 233


>gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str.
           870]
 gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str.
           513]
 gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str.
           686]
 gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis
           M163/99/10]
 gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis
           B2/94]
 gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1]
 gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1]
 gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13]
 gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str.
           292]
 gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis
           M292/94/1]
 gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33]
 gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1]
 gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94]
 gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str.
           C68]
 gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L       L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|330899231|gb|EGH30650.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 230

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  E GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SEKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +++            +    ++  ++  L       L
Sbjct: 3   ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGL--PRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +RA     P++ ++   +    +   D+G DD + KP    E+ AR+ A + R  
Sbjct: 61  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I +    +    QG    LPR+E  +L  L+A  G+ + + ++   +YG
Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +DE VE N +E HI  LRKK       + + + R +GY +D 
Sbjct: 181 -WDEDVESNALEVHIHHLRKKFF----PELIRTVRGVGYLVDK 218


>gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 219

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++  +    +    ++GF        L      D+  ++  L    +  
Sbjct: 1   MIYVVEDDKAIRNLVLYALSEKDYQVKGFEDGLDIVELVRKESVDLLILDVML--PEKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           LE+ + IR  S +P+I ++        +   +SG DD + KP    E+++RV A+  R  
Sbjct: 59  LEILKEIREFSSIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSE 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K        G I +    R  +V GE   L  +E  +L   MAN G  + +      I+G
Sbjct: 119 KKDREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++      + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSAGEN--IKTVRNLGYKL 216


>gi|239945362|ref|ZP_04697299.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991818|ref|ZP_04712482.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 220

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
            +D   V+         +G  + G           ++   D   ++          L + 
Sbjct: 2   AEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVM--MPALDGLAVC 59

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKV 121
           R +RA   + P++ ++   S+   +D  ++G DD + KP    E++ARV A         
Sbjct: 60  RRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAAPPA 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       + +    R     G      R E  +LE L+ + G+ +A+  I   ++G  
Sbjct: 120 PDEDLAFADLTLDPVTRTGRRGGRPVEFSRTEAALLELLLRHPGQVLAREVILERVWGQ- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   + N +  ++  LR+KL        V +   LGY +D 
Sbjct: 179 DFGPDSNSLAVYVGYLRRKLEAGGEPRLVHTVHGLGYRLDV 219


>gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 225

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G + +          +  +   D   ++  L   G+    
Sbjct: 4   LIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIIL--PGKNGYT 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++         D FD+G DD + KP     +LAR+ A+ RR  V
Sbjct: 62  VCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGGV 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +          +  +  +     G    L  RE  +LE L+ N G  + K  +   ++G 
Sbjct: 122 AKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +    +ENVVE +IS LR+K+        + + R +GY ID +
Sbjct: 181 YAILADENVVEVYISYLRRKVDAPFDKKLIRTVRGVGYCIDKD 223


>gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 223

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +        DG ++   +      W  +    DV  ++  L   G     
Sbjct: 4   LVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIML--PGHNGYV 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRLK 120
           + R +RA     P++ ++         +  D+G DD + KP     +     A + R ++
Sbjct: 62  VVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGVR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + V               L  RE  +LEYL+ N    V+K +I  +++  
Sbjct: 122 ERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWDE 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N+VE ++  LRK++    G   +++ R  GY +
Sbjct: 182 -NFDGDANIVEVYVGYLRKRIDTPFGKRSIETVRGAGYRL 220


>gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
 gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++DG        G  +           +       ++ ++          +
Sbjct: 11  ILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEPIHLAIVDIM--MPRMDGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H + P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 69  TMTIKLREHHEFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTR 128

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               A+                  D  +  V G    L   E +IL  LM N G+  +  
Sbjct: 129 FMGMAQKKEEEGRNYVIGGLELNEDTIEFSVDGNPVKLTPIEFKILALLMRNPGRVFSTE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   ++A+  + +  H+  +R K+  N      +     +GY I+ 
Sbjct: 189 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKIEK 238


>gi|58583493|ref|YP_202509.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428087|gb|AAW77124.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 281

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 51  LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 108

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP +  E+LARV A+ RR + 
Sbjct: 109 AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 168

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +++         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 169 SNEQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 228

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 229 LECARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 274


>gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator
           protein [Pseudomonas fluorescens WH6]
 gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator
           protein [Pseudomonas fluorescens WH6]
          Length = 263

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + D   A     G              L    + D+  ++            
Sbjct: 37  LIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALELHQLLKPDLVLLDVM--MPKLDGWM 94

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R      +I ++ +      L     G DD + KP +  E++AR+ A+ RR    
Sbjct: 95  VLAELRHRGNTAVIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRRCGDQ 154

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQI 173
              A+   +RV +   D +       +            E ++L  L     +  ++ ++
Sbjct: 155 GQGADHRVLRVDAFEIDIDNHEVNVHIGTQKQPLYLTVTEFKLLAQLAKAPRRVFSRAEL 214

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +    +    E  V+SHISKLR+K+ +        S R +GY  
Sbjct: 215 L--VLCSPESDSLERTVDSHISKLRRKIEDLGLHGVPSSIRGVGYRF 259


>gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7]
 gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7]
          Length = 229

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++        +G  +  F++              ++  +  L       +
Sbjct: 7   IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLML--PKMSGI 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + IR   S++P++ +S        ++  DSG DD + KP    E+ ARV ++ RR  
Sbjct: 65  DAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHV 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+         V    R  ++  +   L  +E ++L YLM N+ + V + ++ + I+G 
Sbjct: 125 TSDIIRTKHL-TVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 183 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 221


>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 242

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 240

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G+ +   +  E       + + D+  ++  L   G   L
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLML--PGADGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
            + R +R+  + P++ ++        +   + G DD V KP+  R +LAR+         
Sbjct: 69  TVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVET 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S  R E G + + +  R+  + G+   L   E  +L  L +N G  +++  IF 
Sbjct: 129 DSERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGTVLSRETIFE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + G+     ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 189 KLRGI-QYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLF 233


>gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri]
          Length = 229

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G         +      ++   D+  I   L+      +
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTN-PDIGLIILDLMMPEIDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P++ +S  P+    +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVIKRVRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + V     + +         +V  L   E  IL  L ++  +  +   IF 
Sbjct: 122 EVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|322805710|emb|CBZ03275.1| two-component response regulator YvcP [Clostridium botulinum H04402
           065]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         +         + ++  ++  L        
Sbjct: 5   IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS   S    +   +SG DD + KP ++  +LA++ +  RR+  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174
                      +  +G     +        +E  +       L+ +M    +   + ++ 
Sbjct: 123 DYAANSQMERILDVEGLLFYPERLQVHFTGKETMLSKKEGDLLDAMMKIYPRVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+      V+EN +  +I++LRKKL +    D +++ R  GY ++
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLN 228


>gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 8/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    N       L    +   S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCIEQEEMSALVANGGTEGLRLIDENKNLFSLVILDVMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIY 116
           +   IR  S +P++ ++        +     G DD + KP   +E++       R     
Sbjct: 65  VLEKIRETSNIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYTTL 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +      +++    R   V      L  +E  +L +L +N+G+   K QI++ 
Sbjct: 125 NPTFAEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIYTQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           ++   D A ++N + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 VW-KDDYAFDDNNIMSFISKLRKKIEADPEHPFYILTIRGVGYRFNK 230


>gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +   S      +       +  ++      G    
Sbjct: 5   ILVIDDDKELCALIKQSVAVESIDADHCYSGTDGLAMLQKNDYQLILLDVM--MPGLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           +    IR  S VP++ ++      + +    SG DD + KP    E++       R    
Sbjct: 63  QTMEKIRQKSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      +       + +  D R    Q   F LP +E  +L +   N+GK + K QI+ 
Sbjct: 123 FNTTGDHSQPLTYQGLTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++G      + N + + IS+LRKK+ +       + + + +GY  + 
Sbjct: 183 EVWGESYVYDDSN-IMAIISRLRKKIESDSSAPYYIQTVKGIGYRFNK 229


>gi|302876997|ref|YP_003845630.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687688|ref|ZP_07630134.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579854|gb|ADL53866.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    +   +G  + G  S    +        D+  ++  L   G     
Sbjct: 8   LIVEDDIDINELLCNILIKEGYRVRGAYSGSEAKMCLEQFDYDIVLLDLML--PGICGEN 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L   IR    +P+I IS   +    ++    G DD V+KP    E+        R    +
Sbjct: 66  LIAEIRKVKVMPIIVISAKTAQGDKINVLKLGADDFVSKPFDIYEVVARVEAQLRRYKEF 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +NR     I +  D R+  V+ +   L  RE  ILE LM N  K   +  IF  
Sbjct: 126 SNSKEESNRLIYKNITLDLDAREAFVKDKQLSLTFREFEILELLMKNPKKVFTRANIFQT 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   ++N +  H+S LR KL         + +   +G+  
Sbjct: 186 VW-NDEFLGDDNTINVHMSNLRSKLSEVDSETKYIQTVWGIGFKF 229


>gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 219

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++       + G  + G+            +  ++  ++  L  K    
Sbjct: 1   MIYVVEDDKSIRNLVEYALREKGYEVAGYEDGSQIVSDVKDSPGELLILDIMLPEK--DG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           + + + IR  S +P+I ++        +   D G DD + KP    E+++RV A+  R  
Sbjct: 59  ITILKEIREFSDIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSK 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +      +R+    R  +V G    L  +E  +L   M+N G  + +      ++G
Sbjct: 119 KKDTDHISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+N      +++ R LGY  
Sbjct: 179 -YDYEGETRTVDVHIASLRAKLKNAG--KYIETVRNLGYKF 216


>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
 gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTQQEEEITFGEFSLNLATREMHHGEEAIALTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEVDAANPRYIQTVWGLGYVF 233


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  +  E           D+  ++  L   G   L
Sbjct: 3   ILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRML--PGLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    + P+I ++    ++  +   D+G DD + KP    E+LAR+ ++ RR +
Sbjct: 61  EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        + +   + +       L ++E  +LEYLM ++G+ V K  I + ++ 
Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSID 221
            +D  +  N +E +I  LR K+          + ++R  GY ++
Sbjct: 181 -YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +++        +G                 S   D+  ++      G   L 
Sbjct: 8   LIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVM--MPGVDGLG 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           + R++RA     P++ ++        +   D+G DD + KP            L R AA 
Sbjct: 66  VCRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAP 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    + G +R+    R     G    L + E  +LE L  N G  +  + I+ 
Sbjct: 126 TTGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTIYD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   +  +IS LR+KL  +     + + R +GY++
Sbjct: 186 RIWG-YDFGPESKNLAVYISYLRRKLEPEGTTPLIQTVRGVGYTL 229


>gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    ++  S I   ++       +
Sbjct: 5   LIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  + VP++ ++     +  +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYTTL 124

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   VQ     L  +E  +L +L +N+G+   K Q+++
Sbjct: 125 NPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQLYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   +   ++N + + ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-TEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNK 231


>gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 230

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +    L   +G  +      E    L      D+  ++       +   
Sbjct: 5   ILIADDSEEIIEILQILLTGEGYEVVTAGDGEEAVRLADDT-IDLIILDVM--MPVKSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  +  P++ ++           F +G DD + KP  + E+L+R  ++ RR  V
Sbjct: 62  VACSEIRKKTMAPILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLLRRYLV 121

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              ++   P             D R   V+G    L  RE  IL  L+ NR K  +   I
Sbjct: 122 YQGKSFAAPDNRLVLGDLTVDQDTRTVTVEGRDVNLTSREYCILVLLLKNRRKIFSSENI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI  LR+K+  +    + + +    GY ID
Sbjct: 182 YESVWNEPYFYSANNNVMVHIRNLRRKIEKDPQNPEYIKTMWGRGYYID 230


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 18/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  +   D+  ++  L        E
Sbjct: 5   LVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLML--PEMSGEE 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + I    +  P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 SNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S    +               P  +        V  +   L  +E  +++YL+ +  + +
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G FD + +  +V+  I+ LR+K+  +      + + R  GY  
Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R DV  ++  L       L 
Sbjct: 30  LVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIML--PDMDGLA 87

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   + R   QVP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 88  VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 148 AQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+KL    G    + ++R  GY I
Sbjct: 208 VWS-YDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLI 251


>gi|126652889|ref|ZP_01725032.1| DNA-binding response regulator [Bacillus sp. B14905]
 gi|126590309|gb|EAZ84430.1| DNA-binding response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G++ +   N++E  +    +   D   ++  L       
Sbjct: 6   ILVLEDERAIAEMIDIILRKEGMTSITVCNTIEAAKSEIYAKTFDFYLLDIML--PDGSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           LE+  IIR  S  P+  ++   S    L  F +G DD + KP +      R  +     +
Sbjct: 64  LEVAHIIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARYM 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++    N+           D  +  V G    +  R   +L+YL  N G+ ++K QI+ 
Sbjct: 124 KKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D   ++N V  HI KLR+K+  N      + + R +GY +
Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|83643824|ref|YP_432259.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631867|gb|ABC27834.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 244

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++ G + +F   G  ++     +       +   D+  ++  L   G+   
Sbjct: 17  ILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDGLNKSLNGAYDLILLDVML--PGKNGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE----ILARVAAIY 116
           E+   +R      P+I ++   S +  +     G DD V KP    +    + A +    
Sbjct: 75  EICEAVRLKDRDQPIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRRSR 134

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + + +     + +GE     RRE  +L+YL  +  + V++ ++ + 
Sbjct: 135 SASLDDAHICLLGGLEIDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELLNK 194

Query: 177 IYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G   D  +E   V+ HI+KLR+K+  +      + + R  GY +
Sbjct: 195 VWGYARDLDIETRTVDIHIAKLRRKIEADPKQPQRLVTVRGGGYRL 240


>gi|260438704|ref|ZP_05792520.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM
           2876]
 gi|292808906|gb|EFF68111.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM
           2876]
          Length = 217

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  + KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSFLPILILTAFSDEEYKIDAFTNLVDGYMEKPFSLPVLKARIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEMFEYKNLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +EA  + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEAPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|153939200|ref|YP_001390756.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935096|gb|ABS40594.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318828|gb|ADF99205.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         +         + ++  ++  L        
Sbjct: 5   IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS   S    +   +SG DD + KP ++  +LA++ +  RR+  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174
                      +  +G     +       R+E  +       L+ +M    +   + ++ 
Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKEGDLLDAMMKIYPRVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+      V+EN +  +I++LRKKL +    D +++ R  GY ++ 
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNV 229


>gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 225

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  ++     +L ++ R D   ++  L   G   L
Sbjct: 3   ILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRML--PGVDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + IR A +  P++ +S    +   +    +G DD + KP    E+            
Sbjct: 61  TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R +   + +    R     G    L  RE R+LEYL+ + G+ V +T +   ++
Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+++ HIS+LR+K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFDQALIHTVRGAGYTL 221


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      N+         S   D   ++  L       L
Sbjct: 4   ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R     P+I ++   S+   +   D G DD + KP              R +  
Sbjct: 62  EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A   +L               ++       G+   L +RE  +L  L+ N+   V +
Sbjct: 122 EKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYM 229


>gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G+ G +++   +     +       D+  ++  L   G    
Sbjct: 3   LLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVML--PGLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +L +++R     P++ ++   +++  +   + G DD + KP    E+LARV  +  R   
Sbjct: 61  QLLQLVRQRGATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R     G+   L  +E  +L  L + +G+ +++T I S ++ L
Sbjct: 121 REAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWNL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N+VE  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNMVEVAVRRLRAKVDDPYMPKLIHTVRGVGYQLE 220


>gi|284041699|ref|YP_003392039.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945920|gb|ADB48664.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 223

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        DG  +E  +           AR DV  ++   +      +E
Sbjct: 1   MVVDDEPAMREALELALRLDGFEVELASDGRDAIRRLPGARPDVVLLDV--LMPELDGIE 58

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A  + P++ ++    +   +   ++G DD ++KP    E+LAR+ A+ RR   
Sbjct: 59  VCRRMRDAGDRTPVLMLTARDEVDDRVAGLEAGADDYLSKPFALPELLARLHALLRRTGW 118

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        + +     + +  G+   L R E  +LE  + N  + + +  I   ++G
Sbjct: 119 AADAELLRFEDLELDPAACEAKRGGQTLELTRTEFLLLELFLRNPRQVLTRAVIVERVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E ++  LR+K         + + R +GY +
Sbjct: 179 -YDFGPTSNSIEVYVGYLRRKTEAAGASRLLHTVRGVGYVL 218


>gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 217

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +                   E    +    R D+  ++  L        
Sbjct: 4   ILVVEDDIAVANLIKLNLNTANYESTVVFDGEEALNVIERDRFDLILLDVML--PKVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I     +P+I ++   S+   +    +GVDD + KP    E+LAR+  + R    
Sbjct: 62  TLFEKI-KPLGIPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYNK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +N        V+ +    +  GE+  L  +E  +L +L+ N+   + + +I   I+G +
Sbjct: 121 KSNIINFKDTEVYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   E   +++HI KLRKKL  K     + +   LGY ++ 
Sbjct: 180 DYVGETRTIDNHIQKLRKKLGWKDE---IKTVFKLGYRLEE 217


>gi|222112594|ref|YP_002554858.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221732038|gb|ACM34858.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 223

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G ++E  +      +L      D   ++  L       L
Sbjct: 3   ILVVEDEPTLCAQLVQAIAAAGHTVEHASDGAQAHYLGEVEDFDAVVLDLGL--PVLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  R A   +P++ ++   +    +   D+G DD + KP H  E+LAR+ A+ RRL 
Sbjct: 61  SVLRRWRAAGRNMPVLILTARSAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++ + + GPI + +      V G+   L   E ++L  LM  +G+ + +T +   IY 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLPRTLLSEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PHDSDRDSNTIEVFVGRLRKKL----PPGSIETVRGLGYRL 216


>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 230

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G +L   +       +  + + D+  ++          +
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  +  P+I +S        +     G DD V KP    E++AR+ +  RR K 
Sbjct: 64  QACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQ 123

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            NN++      +  D            V G    L  RE  +L  L  NRG  ++  +I+
Sbjct: 124 LNNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++        +N V  HI KLR+K+  +    + + +   +GY I+
Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
 gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +    +G +++     +           D   ++  +       +E
Sbjct: 4   LVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMI--PHVNGME 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + + IRA++Q  P++ ++     Q  +   D+G  D + KP    E LAR+  +   +  
Sbjct: 62  VLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQGV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ N    G + V  +       G    L  RE  ILEYL  NR   V + QI + I+ +
Sbjct: 122 VNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWNI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D  V  NVV+ +I  LR+K+ +K     + + R +GY ++
Sbjct: 182 DD-DVNSNVVDVYIRYLRRKIDDKYDDKLIQTIRGVGYKLE 221


>gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
 gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
          Length = 251

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++++        +  S++         +L S    D++ I+  L       +
Sbjct: 3   LLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGL--PEMDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R H    P++ ++   S Q  +   ++G DD + KP H+ E+LAR+ A   R  
Sbjct: 61  ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++     G I + +  +   +  +   L + E   LEYL  N+ + ++KT++   +Y 
Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  ++ NV+E  I +LRKKL       P+ + R  GY +  N
Sbjct: 181 Q-DFDLDSNVIEVLIGRLRKKLDPNNIHKPIVTHRGQGYRLTEN 223


>gi|325928438|ref|ZP_08189629.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541155|gb|EGD12706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 278

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 48  LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 105

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 106 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 165

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 166 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 225

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 226 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 271


>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
 gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         D+G  +   +              ++S +   ++      L
Sbjct: 4   ILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKI-EESCEISLMILDIMMPKMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           EL R +R   + P+I +S       TL   + G DD + KP             +     
Sbjct: 63  ELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREKR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++   +       +++ +  +         L  RE ++ +Y + N G+ +++ QI
Sbjct: 123 HQMNAIESLQDVLPFDRFKLYLNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F AI+G  +   +   V  +I  LR+KL        + +   +GY +
Sbjct: 183 FDAIWG--ENYGDIGTVAVNIKNLRQKL--DPDNQYIKTIWGVGYKL 225


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S +P+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYIGETNVIDVYVRYLRTKIDDVFKVKTITTVRGVGYVI 223


>gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51]
 gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + +        +G  +    S +   +L +S   D+  ++  L    +  L 
Sbjct: 8   LLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLFTSNHPDMVLLDLGL--PDKDGLV 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIYR 117
           + R IR  S  P++ +S     +  ++  D G DD + KP H      R    +     +
Sbjct: 66  VIREIRGFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +      + V  + R   V G    L   E ++L+ ++AN+GK +    I   +
Sbjct: 126 LAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G + E  +   +   ++ LR+K+   +     + ++  +GY  
Sbjct: 186 WG-YSETGDTKTIRVFMANLRRKIEKNIAKPRFILTEIGVGYRF 228


>gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
 gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  S    +  ++  L   G    
Sbjct: 3   LLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVML--PGLDGW 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +  R+  A   +P++ ++   S+   +   + G DD + KP    E+LARV       +
Sbjct: 61  TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + V +  R  E  G+   L ++E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFADKLIITVRGMGYVLE 222


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E                 D   ++  L   G   LE
Sbjct: 8   LIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLML--PGIDGLE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           + +    R  EV G    L  RE  +L +   +  K  ++  + 
Sbjct: 126 LERNARIDAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 NQVWG-YQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGYKF 231


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +  +      S      +      D+  ++       E    
Sbjct: 5   LIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVM--MPHEDGFV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----YR 117
           + + IRA S VP+I ++   + +  +     G DD + KP  H E++AR+ A+       
Sbjct: 63  VCQSIRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++       G I++    R   V G+  PL  +E  +L   M N G   ++ Q+   I
Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D       V++HI  LR KL        + +   +GY  D
Sbjct: 183 WDI-DYVGGTRTVDTHIKTLRIKLGKD-AASHIQTVWGVGYRFD 224


>gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
 gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R     +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 QDVPGAPTQQEEEVTFGEFTLNLATREMYHDEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 245

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +G  +           + +   E    I   L    +  +
Sbjct: 3   LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR  
Sbjct: 63  EVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----------------FPLPRRERRILEYLMANR 164
                 E                                     L  +E  +L  L    
Sbjct: 123 TEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   +E  V++HI KLR+K+  ++G   + +   +GY  D
Sbjct: 183 RQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIE-RVGPQVIQTVWGVGYKFD 237


>gi|222096358|ref|YP_002530415.1| response regulator [Bacillus cereus Q1]
 gi|221240416|gb|ACM13126.1| response regulator [Bacillus cereus Q1]
          Length = 215

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +   +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEDFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKYSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
 gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V D   + F      +      E     Q++   D+  ++      G   L
Sbjct: 5   LLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALK-QAACHPDLVLLDIN--MPGMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR+H   P++ ++        +  F  G DD + KP    E+ ARVAA  RR   
Sbjct: 62  TVCEKIRSHISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRRENR 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R+  + G    L ++E  I+E L  N G+   + +I+ A++
Sbjct: 122 KQGQSELRFFSEMVIDYSKREVSINGTPVNLSKKEFDIVELLSLNAGQVFDRERIYEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL D     + +  HI K+R K         +++   +GY  +
Sbjct: 182 GL-DGEGNSDTIMEHIRKIRSKFTALSHHSYIETVWGVGYKWN 223


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+ +           L       +  ++          ++
Sbjct: 7   LVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIM--MPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRF 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +                 + +   V GE   L   E +ILE LM N+G+  +  QI+  
Sbjct: 125 ASYKRNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|117617885|ref|YP_858673.1| transcriptional regulatory protein CreB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559292|gb|ABK36240.1| transcriptional regulatory protein CreB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 224

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +         R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFMLGQQLLTRLEQTRPDFLILDVGL--PDISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +R  + +PL+ ++        L   + G DD V KP   RE+      +  R  
Sbjct: 63  FELCKQVRVLTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-CARVRVILRRS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  +  + +  +      +G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 122 QPVAPQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQD 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 182 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 222


>gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 218

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +  +      +L  +   D   ++  L   G   L
Sbjct: 3   ILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGL--PGRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + +  R+     P++ ++    L   ++  ++G DD + KP    E++ARV A + R  
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +R+         +G    L   E R+L YLM +RGK V+++++   IY 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + N VE  I ++RKK       D +++ R LGY I+ 
Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----THSDLIETVRGLGYRINE 218


>gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 228

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 3/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +   +           +   A+  V  +    +      L 
Sbjct: 6   LIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGLT 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+   
Sbjct: 66  VLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWST 125

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S ++       +V       EV G+   L +RE  +L Y + +RG  V++  I   ++G+
Sbjct: 126 SRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVWGM 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +EN V++++  LR  +        +++ R +GY ++
Sbjct: 186 -DFDGQENTVDAYVRYLRATIDLPNHKSLIETVRGVGYRLN 225


>gi|33865481|ref|NP_897040.1| two-component response regulator, phosphate [Synechococcus sp. WH
           8102]
 gi|33632650|emb|CAE07462.1| two-component response regulator, phosphate [Synechococcus sp. WH
           8102]
          Length = 235

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   +++    +   +G  +           L +S   + V  +   L+  G   
Sbjct: 10  LLVVEDDDSIRETVGEVLRAEGYDVLTCGDGAEALNLFTSEPAQQVDLLVLDLMLPGLGG 69

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           L+L R +R  +   P++ IS   S    +   + G DD + KP   R       A +   
Sbjct: 70  LDLCRELRRINNNTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRA 129

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   V         + ++ +       G    L  +E +ILE  + +  +  ++ Q+  
Sbjct: 130 QQDPSVLPEIYSHANLCLYVNECRVTRDGNDLNLSPKEYKILELFLQHPKRVWSRDQLLE 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            I+G+ D   +   V+ HI  LR+K+       + + + R  GY  
Sbjct: 190 KIWGI-DFVGDTKTVDVHIRWLREKIEEQPSSPELIRTVRGFGYRF 234


>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  +   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILL--NLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   +         ++   ++     E   ++  +   D   ++  L    G  +
Sbjct: 3   ILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGLSI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           L   R     S+VP++ I+    +++ +   + G DD + KP    E +    + I R  
Sbjct: 63  LSALRS--KRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       + + ++ R     G    L   E  +LEYL  N G+ +++T++   IY 
Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV++ +++ LR KL        + + R  GY +
Sbjct: 181 T-DFDRDSNVIDVYVNHLRNKLDKGFDRQLIHTVRGAGYIL 220


>gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    ++  S I   ++       +
Sbjct: 5   LIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  + VP++ ++     +  +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYTTL 124

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   VQ     L  +E  +L +L +N+G+   K Q+++
Sbjct: 125 NPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQLYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   +   ++N + + ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-TEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNK 231


>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 229

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +       + G +    N+              +  ++  L    G ++
Sbjct: 8   ILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRTPHLILLDWMLPDQSGLRL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  R    +P+I ++     +  +   D+G DD V KP   RE+ AR+ A    + 
Sbjct: 68  LSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRRKS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + +    GP+ +        +  +   +   E ++L++ +A+  +  ++TQ+   ++
Sbjct: 128 PEHAQSMMRAGPVTLDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ H+ +LRK L+       + + R +GY +
Sbjct: 188 GDH-AVIEERTVDVHVLRLRKALKE--AEHLIRTVRSVGYML 226


>gi|293374408|ref|ZP_06620733.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325837122|ref|ZP_08166293.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292646968|gb|EFF64953.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325491072|gb|EGC93366.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 226

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   +++  +   G D   +      E    L  S + D++ ++      G+    
Sbjct: 8   LVAEDEVKIREILVDFLG-DYFEVIEAKDGEEALRLFHSQQIDLALLDLM--MPGKDGFS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + + IR+ S+VP++ ++   S++  +  +D  VDD + KP  ++    +I   +A     
Sbjct: 65  VLKEIRSVSKVPIMILTARSSVEDQVKGYDLKVDDYITKPFENKILLAKINRLLARTNEE 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+        + V    R   +  E+     +E  +L +L+ N    + + +I  A++
Sbjct: 125 DEVTTYELAFDGLVVNKLSRTVRIDNELIDFRPKEFDLLVFLIENHRIALDRDRILDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +  VV++HI K+RKKL N      + +   +GY  + 
Sbjct: 185 GI-DYFGDTRVVDTHIKKIRKKLGNY--ARYIHTVFGVGYKFEV 225


>gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1]
 gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1]
          Length = 230

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 8/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   ++D  +      G    GF +             ++  ++  L    G +
Sbjct: 1   MIYYVEDDTNIRDLTVYALKQAGFEAAGFPAAGEFFAACKERLPELVLLDIMLPEIDGLE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L + R   A   +P++ ++   +   T+   D+G DD + KP    E+++RV A+ RR 
Sbjct: 61  ILHMLRENPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALMRRA 120

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 A+     GPI +       +V GE   L  +E  +L  L+ N+G  ++++Q+  
Sbjct: 121 SAPPVMADDELSCGPIELCVSAHTVQVGGEPITLTLKEFDLLHTLLQNQGHVLSRSQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            ++G+     E   V+ H+  LR+KL          V + R +GY I
Sbjct: 181 DVWGMT-YVGETRTVDVHVQTLRQKLAAAQEGADALVRTVRGVGYCI 226


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +     +    L ++   D+  ++  L   G   L
Sbjct: 3   ILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNL--PGIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R  +S  P++ +S    ++  ++  D G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N           +  R   +  E   L R+E  +LEY M ++ + ++  ++   I+ 
Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               +   N +  HIS LRKKLR  LG DP+ +K   GY +
Sbjct: 181 GSVNSF-SNSIRVHISSLRKKLRAALGNDPIQNKVGQGYIL 220


>gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222


>gi|300024004|ref|YP_003756615.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525825|gb|ADJ24294.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 233

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +                  D+  ++      GE  L
Sbjct: 15  ILVVDDDQKIRALLGRFLKSNGFRVTEAQDAAAARSFMRGLSFDLVLLDVM--MPGECGL 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
            L R ++A   VP+  ++     +  +   ++GVDD V+KP   RE+L R+  I    + 
Sbjct: 73  TLARDLKATRPVPICMLTALADAEDRISGLEAGVDDYVSKPFEPRELLLRLRNILRRGQT 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +    G     +   +     +   L  RER +L       G  V + ++     
Sbjct: 133 PTATRDEIRMGGCVFNTTRGELRRDDDTIKLTERERDLLRLFAQRIGVAVPRHEL----- 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              D    E  ++  I++LR+K+  +      + + R  GY +
Sbjct: 188 SSDDSTGSERAIDVQINRLRRKIEADPSNPVYLQTVRGKGYIL 230


>gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901]
 gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family
           [Teredinibacter turnerae T7901]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L+DD   + D        +G +++  +S +      +S   +   I   ++  G   
Sbjct: 6   LILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLAS-PPECQLIVLDIMMPGLSG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  +  P+I ++        +   + G DD + KP + RE++ARV AI RR +
Sbjct: 65  LDVLQRLRPSNSTPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRRTQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +             ++Q +       L   E   L+ LM + G+   K  +   
Sbjct: 125 NPTSGDQHLLDVAGIQLSPADMQAKALGTPLQLTGAEFNTLKVLMQHPGQTQTKAFLTEQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      A +   ++ H+S++R+KL N    D + S R +GY +
Sbjct: 185 VLHRPLTAYD-RSIDVHVSRIRQKLANAGIHDIIRSVRGVGYQL 227


>gi|213968160|ref|ZP_03396305.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|302058487|ref|ZP_07250028.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato K40]
 gi|213927140|gb|EEB60690.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 249

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNINARGVTDGSQMRQALTDETFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
 gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 245

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++      GE  L
Sbjct: 13  ILILDDDARIRDLLRRYLAQEGFDVILAEDSKALNRIMLRDAVDLIVLDLM--MPGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 71  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRP 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 131 TAEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +         + +   +GY  
Sbjct: 191 KLAQLARGR-EFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVF 239


>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ +         G   E   + E       +   D+  ++  L    +   
Sbjct: 4   ILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLML--PSKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111
           +L + IR++ ++P++ ++        +  F+ G DD + KP            H     R
Sbjct: 62  QLCKEIRSNKEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSRYDR 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + ++ ++  ++N       +++    R   V  +   L  +E  +L +L  N     +KT
Sbjct: 122 LTSMGKKDNINNGVMVFKRLKILKRERRVYVADKEVKLANKEFELLLFLATNSNIVFSKT 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +   I+G+ D   +   V  HI+++R K+         +++    GY  
Sbjct: 182 ILLDRIWGM-DSFADVATVTVHINRIRDKIEEDSSNPQFIETVWGAGYRF 230


>gi|312140596|ref|YP_004007932.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311889935|emb|CBH49252.1| putative two component system response regulator [Rhodococcus equi
           103S]
          Length = 218

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G ++              +   D+  ++  L   G   LE
Sbjct: 2   LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECETFGPDLVVLDVML--PGFDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120
           + R I+A   VP++ ++        +     G DD       +                 
Sbjct: 60  VCRRIQASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + +    R     G    L R E  +L +L +     +A+  +   ++G 
Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D       V+SH+  LR+KL    G D + +   +GY+++ 
Sbjct: 180 GD-GASSRTVDSHVKALRRKL----GGDVIRTVHGVGYALEV 216


>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    +    D G +++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           LE  R      ++P++ ++        +  FD+G DD V KP H  E+LAR+ A + R  
Sbjct: 63  LEAWRR--EGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL      + + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKLD----VEVIQTVRGLGYLL 216


>gi|253580747|ref|ZP_04858011.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848118|gb|EES76084.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G    F  DG  +    + +      ++   D+  ++  L        
Sbjct: 6   ILIVEDDVDLREGLSFSFSGDGYDVTETGTKKDGLQEIANGGYDIVFLDCNL--PDGTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R++S +P+I ++   +    +   + GV+D ++KP     +         + K 
Sbjct: 64  ELCKEVRSYSNIPIIMLTARDTEMDEIKALELGVNDYLSKPFSLGVLK-ARMKRILQEKS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +  TG + +         +G    L + E R+L YL+ N+   ++K QI   I+   
Sbjct: 123 ESTKIVTGSLSIDQSTCKVYKRGSEISLSKLEYRLLVYLIENKNHILSKEQILEKIWDSD 182

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
            + V+ N V  +IS+LR K+ +       + +   +GY
Sbjct: 183 GKYVDNNTVSVNISRLRTKIEDDVSKPKWIQTVHGIGY 220


>gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 237

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +           +       ++ ++          +
Sbjct: 6   ILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEEIHLAIVDVM--MPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD ++KP    E+LARV +  RR + 
Sbjct: 64  TMTVKLREKYDFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYRK 123

Query: 122 SNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +                G + +  D  +  V G+   L   E +IL  LM N G+  +
Sbjct: 124 YLDMLEAKELKEKSNIYVIGGLELNEDTVEVTVDGKPAKLTPIEFKILALLMKNPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +I+  ++   + A+  + +  H+ K+R+K+  N      +     +GY I+ 
Sbjct: 184 AEEIYERVWN--ERAINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEK 235


>gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S +      ++   D+  +   ++      +
Sbjct: 3   IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATT-PDIGLMILDIMMPQMTGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P+I +S        +    +G DD V KP +  E++ARV ++ RR + 
Sbjct: 62  DVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +   + +     + +          V  L   E  IL  L ++  +  +  +IF 
Sbjct: 122 KVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +  +      S      +    + D+  ++       E    
Sbjct: 6   LIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVM--MPHEDGFV 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IRA S VP+I ++   + +  +     G DD + KP  H E+ AR+ A+ RR    
Sbjct: 64  VCQSIRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++       GPI++    R   V G+  PL  +E  +L   M N G    + Q+   I
Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D       V++HI  LR KL  +     + +   +GY  D
Sbjct: 184 WDI-DYVGGTRTVDTHIKTLRIKLGKEAAA-HIQTVWGVGYRFD 225


>gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++             ++ + ++  ++      G    
Sbjct: 3   ILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVN--MPGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP++ ++   S    +   D G DD +NKP   R + ARV A+ RR+  
Sbjct: 61  EVCRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVGG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      V    R    +       L  RE R+L+YL+AN G+ V+  Q+   ++G
Sbjct: 121 ERPTPLQQGDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHVWG 180

Query: 180 LFDEAVEENV-VESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
                + +   ++  + +LR+K+  N      + +   +GY +  N
Sbjct: 181 HHG--IGDRTLLKQLVHRLRQKIEPNPTEPQYLVTIPSVGYMLQPN 224


>gi|296282156|ref|ZP_06860154.1| DNA-binding response regulator [Citromicrobium bathyomarinum JL354]
          Length = 247

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++  +      G  +   +S      L    + D++ ++      GE  L
Sbjct: 14  ILLVDDERTLREPLVDYLVGQGFVVLEADSAASARSLLREKKADLALVDIM--MPGEDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +     +P I ++        +   + G DD V KP   RE++AR+ ++ RR   
Sbjct: 72  SLTRHLIETQNLPTILLTAMGEATDRIVGLEIGADDYVTKPFEPRELVARIRSVLRRAGR 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E        +G   +   +          P+   E R+L   +      + + ++
Sbjct: 132 AATDDEGEDAHYLFEGWRLDPLKQRLTDPEGAVIPISTAEFRMLRAFLDYPRAVLDRDRL 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              + G      +   V++ +S+LR+K+ +       + + R  GY  
Sbjct: 192 LDMVQGREAHLFD-RAVDNQVSRLRRKIEDDSKNPHFIQTVRGGGYRF 238


>gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD   + +        +G  +    S      +    + D+  ++  L    G ++
Sbjct: 4   ILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQDKPDLVLLDWMLPKMSGIEL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R    +  + +I ++     +  L+    G DD V KP   +E+ ARV  I +R  
Sbjct: 64  LNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILKRYN 123

Query: 121 VSNNRAETGPIRVFS----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             ++  +T  I              D  +  ++  +  L  +E  IL+ L+ N+G+ +++
Sbjct: 124 KQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRVISR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I   I+G +D   E   V+ HI  LRKKL      + +D+ R LGY I
Sbjct: 184 EYILEKIWG-YDYFGETRTVDVHIRYLRKKLGED--ENFIDTIRGLGYKI 230


>gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis
           z3032]
 gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis
           z3032]
          Length = 220

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L    +   
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGL--PDKDGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L    R      P++ ++   +L+  +   D+G DD + KP    E+ AR  A I R  
Sbjct: 61  TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   I +    +   +QG    +  +E  +L  LM   G+ V +  +   IY 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D     N +E HI  LR+KL    G   + + R +GY ++
Sbjct: 181 WQD-DPSSNTLEVHIHNLRRKL----GKTRIRTIRGVGYRLE 217


>gi|218778176|ref|YP_002429494.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759560|gb|ACL02026.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 235

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G + +F  +G + +G    +       S + D+  ++  L        
Sbjct: 8   ILLVEDDPAISRGLLDVFVFNGFAAKGVEDGKQGLDEALSGQYDLVILDVML--PSLDGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R       +I ++   S    +  F +G DD V+KP   +E++ RV A      
Sbjct: 66  SICRKLREAKPSQAIIMLTAKGSENDIVTGFSAGADDYVSKPFSLKELMVRVEAVLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +   G I             +   L RRE  I+ YL    G+ V K ++   ++
Sbjct: 126 KNLGTAKVSIGGIIFDEAQLKASYDDKTEELTRREMDIVLYLHRQEGRIVPKRELLLEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
              D  VE   V+ H+ KLRKK+    G D   + + R  GY ++
Sbjct: 186 HYNDPDVETRTVDIHVLKLRKKITELAGEDKPLIVTVRGEGYKLE 230


>gi|134096807|ref|YP_001102468.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909430|emb|CAL99542.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 219

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A++++         G  +              +    V+ ++  L       +E
Sbjct: 2   LLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVML--PNLDGIE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           L R IR  S VP++ +S        +   ++G DD V KP         I + V  + R 
Sbjct: 60  LCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRRE 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G + V  D  +    G   PL   E R++    A  G  + ++ +   ++
Sbjct: 120 PAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    +  VV+ H+ +LR K+    G + V++ R  GY +
Sbjct: 180 D-YAWGGDTRVVDVHVQRLRAKI----GRERVETVRGFGYKL 216


>gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+   +R      ++ ++    L+  +   + G DD + KP    E+    R        
Sbjct: 61  EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|212633281|ref|YP_002309806.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212554765|gb|ACJ27219.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + + +       D G S+   N  +F   + +  R D+  ++  L    +   
Sbjct: 7   ILVVEDDSSLAEWISDYLLDHGYSITVANQGDFALAMIAEERPDLVLLDVML--PVKNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ +  RA    P++ ++        +   D G DD + KPI  + +    +        
Sbjct: 65  DVCKEARAFYTGPILFMTACVEDGDEIQGLDVGADDYLTKPIRPQVLLARIKALLRRATD 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     + + +  +   ++ +V  L   E  +L  L    G  V+++ + + + G
Sbjct: 125 DNIKQKLVFDSLTLNAAAKSVAIEQQVLDLNANEFDVLWLLALKVGTVVSRSDLIAELRG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + +    +  ++  IS+LRKKL         + + R  GY  
Sbjct: 185 I-EYDGFDRSIDIRISRLRKKLHEAKNQPYKIKTIRGKGYLF 225


>gi|56460761|ref|YP_156042.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179771|gb|AAV82493.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis
           L2TR]
          Length = 237

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++    A    +G +     + E      +S    +  ++  L        
Sbjct: 12  ILVIDDEPQIRRFMRASLTAEGYTYLEAATAEQGIKQITSQNPHLVILDLGL--PDADGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  SQVP++ ++        +   + G +D + KP   RE++AR+  + R L +
Sbjct: 70  QVMRQLREWSQVPVLVLTARDDELQKVKLLEGGANDYLTKPFGIRELMARIHVLLRDLSI 129

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               AE         +  +     +Q E+  L R+E  +L++L+++  K V + Q+   I
Sbjct: 130 EQPTAEAQLRFGELLIDREQHKVFLQNEIVNLSRKEYALLDFLVSHPQKLVTQQQLLEKI 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G   +  + + +   +S++RKKL++       ++++  +GY  
Sbjct: 190 WGQTHQE-DTHYLRIFVSQVRKKLKDDPAQPKYIETEPGVGYRF 232


>gi|150019435|ref|YP_001311689.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905900|gb|ABR36733.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 242

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +   + G  + E    +       +  ++  L        
Sbjct: 6   ILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIML--PDISGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +I+   S + ++   D    +       +         I                 +
Sbjct: 64  ELCKIMSQKSYIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSKNI 123

Query: 122 SNNRAET--------------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
            NN  E                         +  D R     G+   L R+E  +L YL 
Sbjct: 124 FNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSYLY 183

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+G    + Q+ + ++G +D   +   V+ HI +LR  L +      V++   +GY I
Sbjct: 184 KNKGIVFNRQQLLNEVWG-YDYYGDTRTVDVHIRRLRANLGDDKENSIVETVFGVGYVI 241


>gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222


>gi|239982422|ref|ZP_04704946.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454268|ref|ZP_06593658.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357217|gb|EFE84119.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +              +      +    L ++   D   ++  L       +E
Sbjct: 5   LVVEDDAQLARALRINLEVRSYEVAAARDGDGALRLFATGEPDAVLLDLGL--PDTDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR+ S+ P++ +S        +   D+G DD V KP    E+LAR+ A  RR + +
Sbjct: 63  LIKAIRSRSRAPILVLSARHLSGEKVRALDAGADDYVTKPFSMDELLARLRAATRRRRAT 122

Query: 123 NNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   +       D        +G    L   E  +LE L A+ G+RV++  +   +
Sbjct: 123 AEAEALTVVTTDHFTIDLPAKKLLREGHPVRLTPTEWHLLEILAASPGRRVSQRALLLEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G    A   N +  ++++LR+KL  +      + ++  LGY  +
Sbjct: 183 WG-PAYAENTNYLRVYMAQLRRKLEADPSRPRYLITEPGLGYRFE 226


>gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
 gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  ++     +  ++  + +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGL--PDEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R++   +PL+ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     + + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHAQEVIVTVRGQGYRFDVN 223


>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 230

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  ++SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTIDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 203

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 7/208 (3%)

Query: 17  ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76
               + G       + +       +   D   ++          L + + IR  S VP+I
Sbjct: 1   MYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLSVCKEIRKTSDVPII 58

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAETGPIRVF 134
            ++        ++    G DD + KP    E+             +      + GPI + 
Sbjct: 59  FLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQFGPILIN 118

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+
Sbjct: 119 EKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTRTVDTHV 177

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +R KL        + +   +GY  + 
Sbjct: 178 KTMRLKLGESGN--YIQTVWGVGYKFEV 203


>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 235

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  RA      +P++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +      + + +       QG+   +   E ++L YLM +  +  ++ Q+   +
Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQIKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVAGA--MVETVRGAGYRL 225


>gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 237

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 10/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +       ++G ++      E      +S + D+  ++  L   G    E
Sbjct: 13  LVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALE-TASGKIDLIVLDIML--PGVDGYE 69

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRR 118
           + R +R      ++P++ +S     +  ++    G DD + KP+  + ++    A + R 
Sbjct: 70  VCRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRS 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++  E   ++++ D    E+ GE   L   E  +L YL+ +  K   + Q+   I+
Sbjct: 130 GVEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 V E  V++HI  LR+KL +      + + R +GY  
Sbjct: 190 -KDAMMVTERTVDAHIKNLREKLGDF--AKHIQTVRGVGYRF 228


>gi|291535476|emb|CBL08588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F                       + D+  ++          +
Sbjct: 5   ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R+IR+    P++ ++        ++   SG DD + KP   RE+ AR+        R
Sbjct: 62  EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   + G      + E +I+E+L  + G+   K +I++ + 
Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQVC 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +   +   + ++RKK+ +    + +++   +GY 
Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221


>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 218

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G              L      D+  ++  L   G    
Sbjct: 5   ILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIML--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+    +P+I ++    L   ++   +G +D + KP    E+LAR+  + RR   
Sbjct: 63  ELMKRIKDL-NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRRYSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N  E   ++++ D R  +   E   L  +E  ++  L+ N+   +++  +   I+G +
Sbjct: 122 NSNCIEFKSLQIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKIWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   E   +++HI K+RKKL        + +   +GY ++ 
Sbjct: 181 EYMGETRTIDTHIQKVRKKLNIADN---IKTVYKIGYRLEE 218


>gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 229

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 5/212 (2%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
             A    DG  +              +   D+  ++  L       +++ + +R  S+VP
Sbjct: 19  VKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGL--PDIDGIKVCQTLRRDSEVP 76

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV- 133
           +I +S   ++   L   + G DD + KP +  E+ AR+  + RR++ S          + 
Sbjct: 77  VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136

Query: 134 -FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                 +  +QG    L R E  +LE  +A+ G+ + +  I S  +G          V+ 
Sbjct: 137 LDYRSHEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDV 196

Query: 193 HISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           H+ +LRKK+         + +   +GY  + N
Sbjct: 197 HVQRLRKKIEENPQAPRIILTVAGVGYRFEPN 228


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 234

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +            +   NS      +      D   ++      G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVM--MPGMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++    +   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +    +         D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTQLIHTVRGVGYVL 229


>gi|330959033|gb|EGH59293.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 267

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+ +A 
Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLNAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 219

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD A +          DG  ++     E    ++ S R D+  ++      G    
Sbjct: 4   ILAVDDEAKILQIIRKALEKDGHIVQTVQDGEVVRQMELS-RYDLILLDVM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR     P++ ++     +  +    SG DD + KP    E+ ARV A  RR   
Sbjct: 61  TLCREIRETVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLRRELR 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +         +   +    + +  PL + E +I EYL  + G+ +++ QI+ A++G 
Sbjct: 121 EKKQVFAVSGLHFYMQAKKVMAKDQKVPLTKSEYQICEYLALHHGQTLSREQIYEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   + + +  HI  +R KL  K+  +P+++   +GY  +
Sbjct: 180 YEGESDASAITEHIKNIRAKL-IKVQAEPIETVWGMGYRWN 219


>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 232

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +    +         +   D+  ++  L       L
Sbjct: 5   LLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWML--PEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ +S              G DD + KP    E+ ARVA+  RR + 
Sbjct: 63  TVCQNIRWESDVPILMMSA-RKEDADKVEGLQGADDYIAKPFSLEELKARVASHLRRWRR 121

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +              +    +   V  +   L ++E  ++  L  N  +   K +++
Sbjct: 122 YHKQDVIEEHTAYANGLTIDWQRQIVCVYQQEIALTQKEFALVRLLAKNPSQTFTKEELY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             I+       + + V  HI  LR+KL++     + + +    GY  
Sbjct: 182 QHIWQQATLE-DTHTVTVHIKALREKLKDSVKNPNFIQTVWGKGYRF 227


>gi|297564109|ref|YP_003683082.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848558|gb|ADH70576.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 232

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +G  +              +   D+  ++      G   L 
Sbjct: 8   LVADDDRAIRDSLERALQLEGYRVRTVPDGVQALAAVHADPVDLLVLDVM--MPGVDGLG 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++R    + P++ ++        +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 66  VARVLRAERDRTPILMLTARVETPDRVAGLDAGADDYLAKPFELEELLARLRALLRRAAP 125

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A                 R          L + E  +LE L+ N G  +  + I+ 
Sbjct: 126 FPEDASEQGPLRVGELSLDPASRRVWRGDREVELSKTEFDLLELLVRNAGIVLDHSTIYD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   +  +IS LR+KL +  G   + + R +GY++
Sbjct: 186 RIWG-YDFGPESKNLAVYISYLRRKLED-GGPPLIQTVRGVGYTL 228


>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 241

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +     +       G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTLQEEEITFGEYSLNLATREMYHGEESISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|153810516|ref|ZP_01963184.1| hypothetical protein RUMOBE_00897 [Ruminococcus obeum ATCC 29174]
 gi|149833695|gb|EDM88776.1| hypothetical protein RUMOBE_00897 [Ruminococcus obeum ATCC 29174]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D               G ++      E    L  S   D+  ++  L       +
Sbjct: 14  ILIVEDDKRTNMAICEYLKPTGHNIVSAYDGEEALQLFHSTTIDLIVLDIML--PRLTGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S +P++ ++      T    FD   DD V KP     +  R+ A+ RR   
Sbjct: 72  AVLHEIRKSSLIPVLMLTAIEDEYTQSQSFDELADDYVTKPFSMVLLGKRITALLRRCGQ 131

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + V   G     +     +  +E  +L+ L+ ++G  + ++QI   ++G
Sbjct: 132 MQSIDTITFGDVTVNFSGYTAHDKNGRIDITPKEIELLKLLIEHKGLVLTRSQILDELWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D  + +  ++++I  LRKKLR     + + + + +GY  + 
Sbjct: 192 -YDYPIIDRTIDTYIKNLRKKLRL----NCIVTVKGIGYKYEV 229


>gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
 gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
          Length = 236

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +         +   D+  ++      G+   
Sbjct: 7   ILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
            L + +R HS VP+I ++        +   + G DD + K    RE       IL R   
Sbjct: 65  TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           +   +          V  L   +  +L   + +  K + +  I 
Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHVVKQLSGADLSVLGLFINHAEKILTRDDIA 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228


>gi|119487957|ref|ZP_01621454.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455533|gb|EAW36671.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+   L+         + G      +++       +  +  +  ++  L   GE  L
Sbjct: 12  ILVIESDELLAQHVSLDLEESGYYPVVVSNVTVGLHRATEMQPALIVVDRMLG--GESGL 69

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +    ++ P++      +L+  +   +SG DD   KP      L  V    +   
Sbjct: 70  SLCRHLRNQGNRTPMVVFMARDTLEDRVACLESGADDYFLKPYRTESFLQLVRLYLQPTD 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + ++     + +    R     G    L  +E  +L YLM +  + + + QI   ++G 
Sbjct: 130 HNTDQLRFSELGLDLATRCAFRNGRTIELTMKEFDLLRYLMEHPREVLTREQILENVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E NV+E +I  LR K+  +     + + R +GY +
Sbjct: 189 YDFLGESNVIEVYIRYLRLKIEEEGEKRLIQTVRGVGYVL 228


>gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       DG ++  F+  E         R D+  ++  L   G    
Sbjct: 8   IMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVML--PGMDGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAI 115
           ++ + +R   S+VP++ ++        +   +SG DD + KP +      R       + 
Sbjct: 66  QVCKAMRELDSRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRSS 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R        + G   V+      +       L   E R+L       G+ + + ++  
Sbjct: 126 WYRPDPVEEGYQFGVNEVYLLSYRAKTAQGEIDLTEMEVRVLALFFQREGQVIPRGELLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++G +    E   +++ I +LRK    +        + R +GY  
Sbjct: 186 SVWG-YSSDTETRTLDNFIVRLRKYFEPDPTRPTHFLTVRGVGYRF 230


>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
 gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 248

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L   GE  +
Sbjct: 16  ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLML--PGEDGI 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + + +R  +S +P+I ++   S    +   ++G DD + KP + +E        +    
Sbjct: 74  AICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 134 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 194 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241


>gi|159185100|ref|NP_355164.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140371|gb|AAK87949.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 237

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++      GD G  +                R D+  ++      GE  L
Sbjct: 18  LLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVM--MPGENGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R +  +  VP+I ++      + +   ++G DD + KP   R     I   +     
Sbjct: 76  SLTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRRNTS 135

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       R+     E   L  RE+ I+       G  + + ++  A 
Sbjct: 136 PDTPKIEQIMFGPYSFSIPKRELRRGAETIRLTDREQEIMLLFALRAGDTIPRHELVEA- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               +  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 195 ----ESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRL 234


>gi|315923877|ref|ZP_07920105.1| phosphate regulon response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622717|gb|EFV02670.1| phosphate regulon response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 235

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
              ++D   +++  +        ++EG   +  F + LQ+    D+  ++  L G  G  
Sbjct: 3   IYCVEDDDSIRELIVYTLNRSEHNVEGFAAAGPFWQALQAGTLPDLVLLDIMLPGEDGIA 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRR 118
           VL+  R      ++P+I ++   +    +   D+G DD + KP    E+     A   R 
Sbjct: 63  VLKKLRAQGRTREIPVIMLTAKNAEVDKVMGLDAGADDYMTKPFGMMELLSRIRAVGRRT 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++   +    GPI +        V G+   L  +E  +L  L+A  G  + +  + + I+
Sbjct: 123 MRAPASTFSAGPITMDVRAHRVCVAGKAVALTLKEYNLLALLLAGAGTVLTRDALLTKIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E   V+ HI  LR+KL +      +++   +GY I
Sbjct: 183 G-YDFDGETRTVDVHIRTLRQKLGDAG--KMIETVHGVGYRI 221


>gi|228474789|ref|ZP_04059520.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314935741|ref|ZP_07843093.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
 gi|228271452|gb|EEK12820.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313656306|gb|EFS20046.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +          D +     +S E      +  R D++ ++  +   G 
Sbjct: 1   MIKCLIVDDDPKLLHYVSKHLEADHIKTVTHSSGEQALKYLNHHRVDIAVVDIMMT--GM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL ++++   Q+P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQLLKDRYQLPVIMLTARDALSDKERAFVSGTDDYVTKPFEIKELLFRIRAVLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +++          + +D         +   LP +E ++L  L  +  +   +  I   I
Sbjct: 119 YQINTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLCTHPRQIYTRESIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   +E  V+ HI +LR +L+       + + R  GY ++ +
Sbjct: 179 WG-FDYTGDERTVDVHIKRLRTRLKKLEATIEIQTVRGQGYKVNKD 223


>gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445]
 gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445]
          Length = 235

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L       L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 -NYHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|71736657|ref|YP_274226.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557210|gb|AAZ36421.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320329284|gb|EFW85281.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882682|gb|EGH16831.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 249

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|88808922|ref|ZP_01124431.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88786864|gb|EAR18022.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 242

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 25/236 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF--------L 53
            ++++D   +++        +G  +           L ++        ++         L
Sbjct: 14  LLVVEDDDSIRETVEEALRAEGFEVRACGDGAEAMNLLTAT-------DSMGVDLLVLDL 66

Query: 54  IGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HH 105
           +  G   L+L R +R  ++  P++ IS   S    +   + G DD + KP          
Sbjct: 67  MLPGLGGLDLCRQLRKLNNNTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARC 126

Query: 106 REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           R +L R               ++G + +F         GE   L  +E +ILE L+ N  
Sbjct: 127 RALLRRSQQSESVSNQDRQVIQSGNLCLFVRECRVTRDGEDLTLSPKEYKILELLIQNPK 186

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++ Q+   I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 187 RVWSRDQLLERIWGI-DFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 241


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +      E    + S+    V  ++      G   L
Sbjct: 9   ILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVM--MPGMDGL 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R ++     V +I ++    +   +     G DD + KP    E+LAR+ A    + 
Sbjct: 67  EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G   +    ++   QGE   L   E ++L+ L+   G  ++K+ I + ++ 
Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 187 -YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226


>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 238

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D        DG  +                  D+  ++      G   +E
Sbjct: 12  LVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLM--MPGLDGIE 69

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    +P++ ++        +   + G DD V KP   RE++ R+ ++ RR   
Sbjct: 70  VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         G +   +D R  E  G+   L  RE  +L +L+AN G+  ++ ++   +
Sbjct: 130 QDRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+ +       + +   +GY  +
Sbjct: 190 WGWR--FGDQSTVTVHVRRLREKIEDHPAQPRRIVTVWGVGYRYE 232


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +       D+   +    + +           D   ++  L   G   L
Sbjct: 7   ILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR++
Sbjct: 65  EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVE 124

Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +        RV           R+  V G    L  RE  +L +   + GK  ++T +
Sbjct: 125 ALSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231


>gi|210633428|ref|ZP_03297776.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279]
 gi|210159152|gb|EEA90123.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279]
          Length = 229

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ----SSAREDVSAIEAFLIGKG 57
            +L++D  L+ D    L    G S++  ++ +    L      +    +  ++  L    
Sbjct: 5   ILLVEDDPLIVDSLTELLAGSGYSVDTADTQQRAIELAVDSGGAHPYQLILLDVTLRQ-- 62

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                +   ++     VP+I ++       T+     G DD V KP   RE+LAR+AA  
Sbjct: 63  GNGFAVCAAVKEATPDVPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR + S      GPIR+ +D    E +G    L   E R+L     N GK + + +I  A
Sbjct: 123 RRSQPSRRVVSLGPIRIDTDRAYVEREGAELTLSALEYRLLLLFATNPGKLITRDKIRDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++      +EEN +  +I +LR K+  +    + + + R LGY 
Sbjct: 183 LWDSAGTYIEENTLSVYIKRLRDKIEGDPSRPELIQTVRGLGYK 226


>gi|116872936|ref|YP_849717.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741814|emb|CAK20938.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGFETFFKDDFDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R IR  S VP+I ++   S    +   + G DD V KP     ++        R   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +                      +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 SSSNENEEDILETNYFKISKRTREIFYQGKLLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTVWGVGYKFDE 226


>gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 229

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       + +       +   D+S +   ++      +
Sbjct: 3   ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRT-DPDISLMILDIMMPEMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           ++ R +R  S +P++ +S        +    +G DD V KP +  E++A      R +  
Sbjct: 62  QVVREVRKDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRSEK 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I          + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 DMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
            ++   +  +    V  H+S LR K+     G   +++   +GY 
Sbjct: 182 RVW-QQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225


>gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G ++   +            R D++ I+  L   G   ++
Sbjct: 5   LIVDDDPAILEILQAYLVAEGHTVLSASDGFGARE--GLPRADLAIIDWML--PGVSGMD 60

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  RA     P++ ++     +  L   D GVDD V KP   RE++ARV A+ RR+ V
Sbjct: 61  LVREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +      +        + G    L + E  +L  L  + G    + ++   ++G  
Sbjct: 121 REEVSIGDL-SIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWG-S 178

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           D    E VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 179 DFLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRF 218


>gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        DG                S+ + D+  ++  L   G    E
Sbjct: 1   MIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLML--PGIDGYE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR  ++VP++ ++        +     G DD ++KP    E++ARV A   + +  
Sbjct: 59  ICRKIRGKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERL 118

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   + GP+R+        +         +E  +L +L++N     +K Q++ 
Sbjct: 119 TTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G+ D   +   V  HI++LR+K+  +      + +    GY  
Sbjct: 179 RIWGM-DAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGTGYHF 223


>gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 210

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 8/215 (3%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++        + G       + +    +  +   D   ++          + + + IR  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIM--MPQMDGISVCKEIRKT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRLKVSNNRAE 127
           S VP+I ++        ++    G DD + KP         +  V   Y + +      +
Sbjct: 59  SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQ 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I +    R  E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A   
Sbjct: 119 FGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDYAGST 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             V++H+  +R KL        + +   +GY  + 
Sbjct: 178 RTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 210


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +    R          L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814]
 gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814]
          Length = 236

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|49081994|gb|AAT50397.1| PA1799 [synthetic construct]
          Length = 236

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +     +     G  +   +  +         +  V  ++  L   G+  L+
Sbjct: 10  LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLML--PGQNGLQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R IR  + +P++ ++        +   +SG DD V KPI        L  +   +  L
Sbjct: 68  VCREIRRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPL 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G + +    R+ E++G    L   E  +L  L +  G+ +++ +I + I G
Sbjct: 128 PASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIRG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +         V+  ISKLR KL++       + +    GY  +
Sbjct: 188 IG-FDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFN 229


>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 232

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  +      +    + S    D+  ++          L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIM--MPKRNGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
           E+ + +R H+   P++ +S        +    +G DD + KP +  E++           
Sbjct: 63  EVCQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSS 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +       I +       +V GE   L   E  IL  L +N G+  +  +
Sbjct: 123 FQQTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           IF  ++   D       V  HIS LR KL   +     + +   +GY I+ 
Sbjct: 183 IFERVWNE-DGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGYKIEK 232


>gi|296445314|ref|ZP_06887272.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257075|gb|EFH04144.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 243

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +          +           +   ++   D+  ++  L   GE  L
Sbjct: 11  ILLVEDDAEIGELISRYLATHQIEAAVVADGRAMDATLAARDFDLVILDLNL--PGEDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  + +P+I ++        +   + G DD + KP + RE+LARV ++ RR + 
Sbjct: 69  SICRRLRDGANLPIIIVTAQGEDVDRIIGLEMGADDYIVKPFNPRELLARVRSVLRRSRA 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           S    E    R +                       L   E  +L  L     + + + Q
Sbjct: 129 SAQTKEPAGGRFYQFEGWRVDIMAHQVTAPTGMKIALTGAEFDLLYALCERPNRVLTRDQ 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +    +G      +   ++  IS+LR+KL  +      + + R  GY  
Sbjct: 189 LIGLTHGPTASPFQ-RSIDVLISRLRQKLESDPKNPKLIQTVRSEGYLF 236


>gi|283781851|ref|YP_003372606.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283440304|gb|ADB18746.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 235

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A ++    A    +G  ++  +S      + +S   D+  ++  L        E
Sbjct: 14  LIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGL--PDRDGQE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           +   +R     P+I +S        +   D G DD V KP    E    +        R 
Sbjct: 72  VLEQLREWYTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRT 131

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G ++V    R    + E   L   E ++L  ++ + GK +    +   ++G
Sbjct: 132 GTEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             D   E + +   ++ LR+K+  +      + +++ +GY  
Sbjct: 192 PQDSQ-ENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232


>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +           L +S   D   ++  L        
Sbjct: 3   ILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNL--PDMDGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+   +R   S +P+I ++    +   +     G DD + KP            I  R+A
Sbjct: 61  EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    + R   G +            G    L  +E  +L  LM + G  +++T+I
Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++G+ D     N+VE ++S+LR+KL + LG   V++ R  GY +
Sbjct: 181 LRAVWGMED-DPLTNIVEVYLSRLRRKL-HALGPPVVENVRGFGYRL 225


>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 239

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G+ +E  +  E      S A  DV  ++      GE  L 
Sbjct: 8   LVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRASFDVIVLDLM--MPGEDGLT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           L R IR  S +P+I ++        +   + G DD + KP   RE           ++  
Sbjct: 66  LCRNIREKSAIPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRSKSM 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    + +      ++    R+        PL   E R+L   + N    +++ Q+
Sbjct: 126 PYQGEANQESKQFSFLNWQLNPIKRELVSDQNTIPLSSAEFRLLTVFLENPKHVLSRDQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                G     V +  +++ IS+LRKK+  +    + + +    GY  
Sbjct: 186 TEMTKG-HTAGVFDRSIDNQISRLRKKIEIDPKTPEILKTVWGGGYIF 232


>gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 238

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + + +      G +G+      S E       +   D+  ++  L   G    
Sbjct: 5   ILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNL--PGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E     R     P++ +S   + +  +     G D+ + KP   R ++ARV A+ RR++ 
Sbjct: 63  EFLHKFRKTHSTPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S      G   +          GE  PL  +E  IL +L+ N G+ +    I
Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++   +   + + V  +I +LRKK+  +      +++   +GY  
Sbjct: 183 YDEVW--KNAYGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGYRF 228


>gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 245

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +G  +           + +   E    I   L    +  +
Sbjct: 3   LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR  
Sbjct: 63  EVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----------------FPLPRRERRILEYLMANR 164
                 E                                     L  +E  +L  L    
Sbjct: 123 TEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   +E  V++HI KLR+K+  ++G   + +   +GY  D
Sbjct: 183 RQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIE-RVGPQVIQTVWGVGYKFD 237


>gi|223985835|ref|ZP_03635876.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM
           12042]
 gi|223962225|gb|EEF66696.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM
           12042]
          Length = 223

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++++        +G  +   +       L      D   ++           
Sbjct: 7   ILIVDDEQMIREVVREYALINGYEVAEASDGLEALELVEKEDFDCVILDIM--MPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P+I +S        L  F+ GVDD V KP   +E++ARV  I  R K 
Sbjct: 65  SACKQIKKIKPIPIIMLSARQEEYDKLFGFELGVDDYVVKPFSPKELMARVKVILERFKT 124

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +         ++  +GR   V GE   L  +E  +L Y++ N+   +++ ++   ++  
Sbjct: 125 KDTEVLRFEGLQINIEGRSVTVDGEKANLTPKEIDLLLYMVKNKNIALSRMKLLEEVWD- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   ++  V++HI  LR  L++      + + R +GY  +
Sbjct: 184 YDYFGDDRTVDTHIKMLRHNLKDY--RKFIVTVRGMGYKFE 222


>gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
 gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
          Length = 253

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    + +    L      D+  I   ++       
Sbjct: 27  ILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENS-DIDLIIMDIMMPEMSGT 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  S VP++ ++         + +D+G DD ++KP    E++ +V A+ RR  +
Sbjct: 86  ESCSAIREFSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRRYNI 145

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R +          I +    R      EV  L  +E  +L +L+ NRG+     +++
Sbjct: 146 YKGREDNNDGILRVGAISIDPYKRVVTKDNEVIHLTDKEFALLFFLVKNRGRSWNLDELY 205

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+         N V  H+ +LR+K+ +     + + +    GY +D
Sbjct: 206 ENIWQEKYLPSSSNTVMVHVLRLRQKIEDNPAQPEIIRTIYGKGYQVD 253


>gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 233

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G ++      +         R D +     L+  G   L+
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFR--RHDPAITILDLMLPGRDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R +RA S  P++ ++        +   +SG DD V KP+  R     +  +   + + 
Sbjct: 63  VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNKG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E GP+ +    R     G    L   E  +L  L +  G+ + +  + +A+ G
Sbjct: 123 QEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +    +  V+  +SKLR+KL +       + +    GY  
Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTIWGKGYLF 223


>gi|225871922|ref|YP_002753376.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225793413|gb|ACO33503.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 234

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L+DD   +         ++G ++      E    L  +   D+  ++  L    G +VL
Sbjct: 4   LLVDDDGALTRFLERGLAEEGYTVTSAADGEAALELLEAMLPDLVVLDLNLPRRDGTEVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R   A  +VP++ ++    + + +   D G DD + KP    E+ AR  A+ RR   
Sbjct: 64  AALRARHA--EVPVLVLTGRSEVASRVRCLDLGADDCLLKPFSLAELKARCRALLRRRGG 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +         V       +  G    L R E  +LE LM +RG+ V++ ++   ++  
Sbjct: 122 TAHLVLRHEDLEVNRVEHTVQRGGREVALTRTEYALLECLMLHRGRPVSRARLLEEVWHE 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E    N+V+ +++ LR+KL ++     + + R LGY
Sbjct: 182 SAENG-TNIVDVYVNYLRRKLGDEGPAPLIQTVRGLGY 218


>gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
 gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +                     +         +  +  ++  L   G   +
Sbjct: 11  ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLML--PGMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
            + R +R  S VP+I ++        L   + G DD + KP   RE++        R   
Sbjct: 69  SVCRELRKFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQP 128

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      + +  +        ++  L   E R+L+++  N G   ++ Q+ 
Sbjct: 129 NMTTSNSQTNSNNQTKLIIDENAFQVRYGSQLLELTPAEFRLLKFMSDNAGMVFSRDQLL 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
             +Y      V +  ++SH+  LR+KL +       + S   LGY  D 
Sbjct: 189 DILYDDH-RVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWDE 236


>gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 228

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 5   LLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R +R      P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDFPQRLIHTVRGMGYVLEE 225


>gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 229

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+     +  +   +L ++   DV  I+          + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWM--MPYLDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +I+R  +   P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                            +   +         L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++          G  +    S E       ++   +  ++      G+  LE
Sbjct: 8   LIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIM--MPGKDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R HS VP+I ++        +   + G DD ++KP + RE+LAR+ A+ RR K  
Sbjct: 66  VLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGP 125

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N                   +  E++G+   L   E ++L+ LM N G+ + +  + ++
Sbjct: 126 ENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTS 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++G  D    +  ++ HISKLR   +     +  + +    GY  
Sbjct: 186 VWGK-DFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229


>gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 227

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++ G   +   +G S+   ++ +         + D   ++           
Sbjct: 3   ILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIM--MPELDGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR H  Q P+I +S        +   + G DD +NKP    E+ AR+  I RR  
Sbjct: 61  SVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARRCL 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   +            +      + Q +   L  RE +IL  L   + + V +  +  
Sbjct: 121 KAKQNSPDQSFIFGDLTIYPMELCAKRQQQTIELSLREIKILSCLHRYKNQIVTRDMLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D       ++ HISKLRK + +       + +    GY 
Sbjct: 181 WVWGV-DHLPNSRTLDQHISKLRKMIESDPNTPLLIKTIHGYGYR 224


>gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +   DG       S    + L      D+  ++  L G   + L
Sbjct: 6   ILIVEDDTDINHLLHRILMQDGYDTIQAFSGTEAKLLLRLEAPDLILLDLMLPGMSGEEL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +         +P++ +S    L+T +    +G DD + KP   +E+LARV A  RR K+
Sbjct: 66  IVTVREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRRYKI 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D R  E+ G+  PL   E  IL  L+ +  K  ++  ++
Sbjct: 126 EAGKTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRENLY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++       E+N V  H+S LR+KL       + + +   +G+ +
Sbjct: 186 EQVW-KGGYYGEDNTVNVHVSNLRRKLSAADPEEEYIRTVWGIGFKM 231


>gi|291009674|ref|ZP_06567647.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 223

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +            + D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLML--PGMNGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR    
Sbjct: 64  VCKAIRTESVVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDAE 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +     +   G +    G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 PAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V     +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVQ--RLRSKVERDPERPEVVLTVRGVGYK 219


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D       + G ++    + +    +    RED+      ++      +
Sbjct: 5   ILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVL--NREDIHLAIVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R    +P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 63  TMTMRLRETYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQ 122

Query: 122 SNNRAETGPIRV-------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             N   +                    D ++  V G    L  +E +IL  L+   G+  
Sbjct: 123 ILNLKHSSIKEEENSNRYVVGGLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVY 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  QI+  ++   ++A+    +  HI KLR+K+  N      +     +GY ++ 
Sbjct: 183 SSEQIYEQVWN--EKAINTETIMVHIRKLREKIEVNPKKPHYIKVVWGIGYKMEK 235


>gi|315303259|ref|ZP_07873903.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL
           F6-596]
 gi|313628371|gb|EFR96860.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + ++    +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEINATFVHDGKLGYETFLKEDFDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 STLAETDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTIWGVGYKFDE 226


>gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A +++       ++G+ +             +S + D+  ++            L 
Sbjct: 2   VDDDAHIRELVRVFLQNEGLEVIEATDGVDALSKLASEKVDMVIMDIM--MPNMDGWALC 59

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             IR++    P++ ++        +  F  G DD + KP    E++ RV +I +R +++ 
Sbjct: 60  EEIRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIAL 119

Query: 124 NRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++              + ++ GE+  L  +E  +L  L +  GK  ++ Q+   I+G +D
Sbjct: 120 SQVVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +E  ++ HI ++R++   ++    + + R LGY ++
Sbjct: 179 YEGDERTIDVHIKRIRERFPQEISGFVIRTLRGLGYRLE 217


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++IDD   + +         G++    ++ E           D+  ++  L    G  V 
Sbjct: 5   LIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPDMSGIDVC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       V ++ ++        +  F+ G DD V KP   RE++ R+ AI RR   
Sbjct: 65  RQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILRRGAP 124

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         GP+R+        V+     L   E R+LE+L+A  G+   + Q+   ++
Sbjct: 125 TAGGTAPLALGPLRLDVASHRFFVEDREVALTALEFRLLEHLLARLGRVQTREQLLEEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL   ++E   +++H+ +LR KL        +++ R +GY +
Sbjct: 185 GLS-SSLETRTIDTHVMRLRDKLG--PARALLETVRGVGYRM 223


>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 230

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +               ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIM--MPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP+I ++        +     G DD + KP H  E+         R   
Sbjct: 62  ETCRKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDEL-LARIEAVLRRSN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   I          V G+   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHELIQYKGILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           D   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 DATTEDRTVDSHIRNLRDKLRKAKFPIDEHLKTVYGVGYR 219


>gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 245

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +G  +           + +   E    I   L    +  +
Sbjct: 3   LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR  
Sbjct: 63  EVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----------------FPLPRRERRILEYLMANR 164
                 E                                     L  +E  +L  L    
Sbjct: 123 TEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   +E  V++HI KLR+K+  ++G   + +   +GY  D
Sbjct: 183 RQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIE-RVGPQVIQTVWGVGYKFD 237


>gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
 gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
          Length = 266

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   + +         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++     +  +  F+SG DD + KP    E+ ARV A+ RR  
Sbjct: 65  CQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124

Query: 121 VSNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +          + S           +         L   E  +L  L+   G+ VA + 
Sbjct: 125 RAPIGTSGNHHEILSYGPLTLVPERFEAIWFDHPVRLTHLEFELLHCLLQRHGQTVAPSL 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|294678417|ref|YP_003579032.1| transcriptional regulatory protein BaeR [Rhodobacter capsulatus SB
           1003]
 gi|294477237|gb|ADE86625.1| transcriptional regulatory protein BaeR [Rhodobacter capsulatus SB
           1003]
          Length = 232

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   + +   + F  +G  +                R D+  ++  L   G   
Sbjct: 5   LILIIEDEPEIAEILESYFAREGFRVICAGDGPLGLAHHQRLRPDLVVLDIKL--PGLDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR   + P+I ++        L     G DD V KP +  EI+AR  A+ RR  
Sbjct: 63  YEVLATIRRRGETPVIMVTALAEDLDKLQALRIGADDYVVKPFNPLEIVARARAVLRRTL 122

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                        +   +      +         L   E RIL ++ A  G+  A+  + 
Sbjct: 123 GRAPETLLRLGPLSVDPQAIRAVVETAAGPVPLDLTPTEFRILAHMAAAPGRAFARADLV 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A   L +    +  V+SH+S LR+KL        +   R +GY ++
Sbjct: 183 DAC--LPEGEALDRTVDSHVSNLRRKLSAAGAEGLLTGVRGIGYRLE 227


>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 235

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  RA      +P++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +      + + +       QG+   +   E ++L YLM +  +  ++ Q+   +
Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQLKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVAGA--MVETVRGAGYRL 225


>gi|255020849|ref|ZP_05292905.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969640|gb|EET27146.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G+ +   ++        ++   DV  ++  L G G+  + 
Sbjct: 5   LIVDDDQRLAALLQDFLQAEGMVVRTASNGREMWQQLAAEPVDVVVMDWMLPG-GQDGIS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120
           L R +RA S  P++ +S     +  +   +SGV+D               RV        
Sbjct: 64  LVRELRAKSGPPILMLSARGEEEERIHGLESGVEDYLAKPFNARELLARLRVLLRRAGRG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S      GP  +    R    +GEV  L   E  +L        + +++  +  A+ G 
Sbjct: 124 DSGRVLHFGPFVLDLVERRLFREGEVVELSPAEMDLLLVFAQRPNRALSRDHLLQAL-GG 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            D+   +  ++  +++LRK +         + ++R +GY  
Sbjct: 183 DDDGRFDRSIDVRVTRLRKLIEENPRQPRFLRTERGVGYRF 223


>gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL   + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGYLFNE 222


>gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM
           16841]
 gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM
           16841]
          Length = 236

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A   D G +++          L +    D   ++  L       L
Sbjct: 3   ILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGL--PRLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + R  RA     P++ ++   S    ++  D+G DD ++KP    E+LAR+ A I R  
Sbjct: 61  SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GP+R+        V G    L   E R+L+YLM + G  V+KT +   IY 
Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R  GY +
Sbjct: 180 AQDFDRDSNTIEVFVGRLRRKL----GVDIIETVRGQGYRL 216


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G ++              +   D+  ++  L       L 
Sbjct: 19  LIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVML--PDTDGLA 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           + R +RA S++P+I ++    +   +   + G DD + KP   RE++AR+ A+  R  + 
Sbjct: 77  VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTRD 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + V    R   +      L   E  +L YL  NRG+ +++ +I     G+ 
Sbjct: 137 DAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           D    +  ++  +S+LR+KL +       + + R +GYS 
Sbjct: 196 DWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235


>gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
 gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D  ++++     F  DG  +      +    L ++   +VS I   ++        
Sbjct: 5   LIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVMDGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR  S VP+I ++       TL  F+ G DD V KP           R+     + 
Sbjct: 65  ICRRIRKSSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRLFKDTNQN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL+ LM ++ + + + Q+ + I+G
Sbjct: 125 LQFQDCIHLCGIRLDKSARSVSIDGQKIDFTHTEYEILQSLMEHKEQVLTREQLITNIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHITTVVRTGYKFEV 224


>gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19]
 gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
          Length = 235

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L       L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G ++           +    R  +  ++  +   G    E
Sbjct: 7   LIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIAKERRPGLIVLDLMI--PGADGFE 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  S    +P+I ++        +   + G DD V KP   RE++ R+ A+ RR 
Sbjct: 65  VCRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRRS 124

Query: 120 KVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        +R+  D     + GE       E ++L  L+ +RGK  ++  +   
Sbjct: 125 PPDGAQGSVWQLEGLRIDFDAHKVLIDGEDVLFTATEFKLLVELIRSRGKVKSRDYLLDK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR+KL      D V++ R +GY  
Sbjct: 185 VWG-YHFEGYARTVDTHVRRLRQKLGPY--ADRVETVRGIGYRF 225


>gi|311108903|ref|YP_003981756.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
 gi|310763592|gb|ADP19041.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D       +    ++                 DV  ++  L   G    
Sbjct: 3   ILLIEDERKLADYVRKGLTEHNYVVDVARDGIDGRHAAIEGDYDVVVLDVML--PGVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            +   +R H Q P++ ++    ++  +   + G DD + KP    E+LAR+ A+  R   
Sbjct: 61  GVLADLRKHKQTPVLMLTARDKVEDRVRGLEGGADDYLVKPFAFSELLARIQALLRRGRG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + +    R  +  G    L  +E  +L  ++   G+ +++T +   ++ +
Sbjct: 121 QESTLLKLADLEMDLARRKAQRGGMRLDLTAKEFTLLTLMLRRHGQVLSRTVLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIEVAVRRLRAKIDDPFETKLLHTVRGMGYVLE 220


>gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
 gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
          Length = 222

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 89/221 (40%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +         +G  ++  N       +      ++  ++   +       
Sbjct: 5   ILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDI--VMPNLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119
            + ++IR  S VP+I ++   S    +  FD   DD + KP  +              + 
Sbjct: 63  SMCKMIRKESDVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRRSKE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        I++       E+ G++  L  +E  IL+ L+ N  + V + ++  +I+G
Sbjct: 123 DKAGVYLTFEKIKLNLKTYSAEIDGKIIDLTLKEFNILKSLIENYPQVVTREKLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   +  +V++HI  +RKK+        + + + +GY++
Sbjct: 183 -YDYFGDTRIVDAHIKNIRKKIILP----YIKTVKGIGYTL 218


>gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72]
 gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D     D       + G  ++          L      D+  ++  L    G  V
Sbjct: 3   ILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGWGV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R   A  ++P++ ++    ++  +   + G DD + KP    E+LARV   + R  
Sbjct: 63  LQTVRR--AGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDSFEPKLIRTVRGMGYVLE 221


>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
 gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG + E          L ++   D+  ++  L        
Sbjct: 3   ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGL--PDMSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +S VP++ ++        +   + G DD V KP   RE+++R+ AI RRL  
Sbjct: 61  DVCRALRRYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRRLNP 120

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                           V  DG      G    L R E  +L  L+   G+ +++TQI  +
Sbjct: 121 EPRLAAAPPPTPSRFAVDRDGLRIAYHGHWLNLTRYEYLLLALLLERPGRILSRTQIMES 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    E++E   V++HI  LR KLR  +   D + + R LGYSI
Sbjct: 181 VWQDGGESLE-RTVDTHIKTLRGKLRGLRPDEDVIVTHRGLGYSI 224


>gi|116049749|ref|YP_791444.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389810|ref|ZP_06879285.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313110495|ref|ZP_07796380.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115584970|gb|ABJ10985.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882882|gb|EFQ41476.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 235

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +     +     G  +   +  +         +  V  ++  L   G+  L+
Sbjct: 10  LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLML--PGQNGLQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R IR  + +P++ ++        +   +SG DD V KPI        L  +   +  L
Sbjct: 68  VCREIRRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPL 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G + +    R+ E++G    L   E  +L  L    G+ +++ +I + I G
Sbjct: 128 PASPESLTFGKLNIDRRRREAELEGRGIELTTMEFELLWLLANQAGEILSRDEILNQIRG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +         V+  ISKLR KL++       + +    GY  +
Sbjct: 188 IG-FDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFN 229


>gi|219666111|ref|YP_002456546.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219536371|gb|ACL18110.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G +++        +   ++    V      ++  G+   
Sbjct: 7   ILVVDDDPEIREIIHILLQREGFAVQV---AADADTALATLTPGVDLAILDIMMPGKSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  + +P++ ++         + F  G DD + KP    E+++RV A+ RR  +
Sbjct: 64  ELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLI 123

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +              +  D       GE   L   E ++   L+ NR K  +  +I+
Sbjct: 124 YQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+      +  N +  HI  LR+KL   +G    + +    GY I+
Sbjct: 184 EHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE 231


>gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          +  + G  +      +           D+  ++  +        
Sbjct: 3   ILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKS--NGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR +S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRNSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +            E +          L   E R+L YLM N G+ +  +QI S 
Sbjct: 121 DLLSTSSRLSHGDLTLDPVEHKAIFSDGRTIELTPLEFRLLYYLMKNAGRILNVSQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+  +      V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIERDPEHPTYVITVRNLGYKFE 225


>gi|307332348|ref|ZP_07611420.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306881995|gb|EFN13109.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 239

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A ++         +G S+   +              DV  ++          +E
Sbjct: 10  LVTDDDAAIRRSLERGLRLNGFSVTLADGGHAALAAVRDGAPDVVVLDI--SMPDLSGIE 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ +S    +   +    +G DD + KP   +E++ R+ A+ RR   
Sbjct: 68  VCRALRGDGNDVPVLMLSALDEVSDRVAGLQAGGDDYLVKPFALQELVLRLHALLRRRPP 127

Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +              + +   + G    L RRE  +L+    N G  + + Q+   ++G 
Sbjct: 128 AATDRVRAGALEMAPEAQGAWLDGTPLRLTRREFELLDTFARNAGIVLTRDQLLDRVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D  V  + V++ +S LR+KL        + + R +G+ +
Sbjct: 187 YDFEVRTDAVDTFVSYLRRKLEAGGRPRMLHTVRGVGFVL 226


>gi|300856180|ref|YP_003781164.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436295|gb|ADK16062.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 242

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   + D    +   +G  +++  +       +  S R D+  ++  L       
Sbjct: 11  ILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGVKICQSERTDIVVLDIML--PDIDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S  P++ +S   S    +     G DD + KP   REI  R+ A  RR +
Sbjct: 69  IEVCKRIRQFSYCPILFLSAKNSDVDKIVGLSMGGDDYITKPFSPREIAFRIKAQLRRQQ 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     G I +          G    L  +E ++L YL  N  K V K 
Sbjct: 129 YDGIKEVKSSENENIIIGSITIDKLHSQVYKDGSEVKLTAKEYKLLLYLAENSNKIVNKE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++   ++G  D    +N +  HI  LR+KL  N    + + +   LGY +
Sbjct: 189 RLCEVVWG-DDYFGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKL 237


>gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 239

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +        +          ++ D   ++  L       +E
Sbjct: 9   LIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSL--PDCDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARVA 113
           + R IR +S V ++ +S   S    +     G DD + KP          +         
Sbjct: 67  ICRKIRENSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   ++  +      + +           +  PL  +E  +L +L  NR +  +K Q+
Sbjct: 127 LQHSGGQMGVDVIHIDNMVINKQEYIFLRDSKPIPLSAKEFELLFFLAKNRNQVFSKGQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A++G ++   +EN +  +I +LR+K+  +      + +   +GY  
Sbjct: 187 LDAVWG-YETYGDENTITVYIRRLREKIEVSPSHPVYLQTVWGVGYKF 233


>gi|296445086|ref|ZP_06887047.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257507|gb|EFH04573.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 232

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           +   D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEGEGYRVQTYTDGAAALDGLRANPPDLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD ++KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRANP 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               A+              +  +      +G+   L   E  IL+ L    G   ++  
Sbjct: 122 KEAAAQKESEAKVLERGALVMDPERHTCTWRGDPVVLTVTEFLILQALAQRPGVVKSRNA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 LMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVADSEFEMIETLYGVGYRF 229


>gi|282898997|ref|ZP_06306979.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196137|gb|EFA71052.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+    +         + G                   +  +  ++  L   GE  L 
Sbjct: 10  LVIEPDETLASQLGFDLQEAGYEAIIATDANSGLHKCRDLQPALIVVDRML--PGESGLS 67

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +RA     P++ +    ++   +   ++G DD + KP    E    +    +    
Sbjct: 68  FCKSLRATGNTKPVLILMARDAMDDRVACLEAGADDYILKPYRSEEFSKLIRLYLKPDVD 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+ +   G + +    R      +   L  +E  +L++ M +  + + + QI   ++G +
Sbjct: 128 SSEQLRFGDLVLDIGTRRAIYNNKAIDLTMKEFELLKFFMEHPREVLTREQILENVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV+E +I  LR K+        + + R +GY +
Sbjct: 187 DFVGESNVIEVYIRYLRLKIEENGQKRLIQTVRGVGYVL 225


>gi|290955694|ref|YP_003486876.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645220|emb|CBG68306.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      +S E      ++ R D+  ++  L   G    
Sbjct: 6   LLVVDDDPPIADLVATVARYEGWEAVTAHSGEEALRQAAAFRPDIVVLDLML--PGVDGF 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    + P++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 64  GVLDRLRQSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 123

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + +  D R+     ++  L   E  +L YLM      + K QI   +
Sbjct: 124 GPAFQRSVLHVADLSMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL +      + + R  GY +
Sbjct: 184 W-EYGFGGRSNVVELVVSRLRRKLDDTGEP-LIHTVRGFGYVL 224


>gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 214

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V SD     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214


>gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC
           27755]
 gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758]
 gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656]
 gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82]
 gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC
           27755]
 gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758]
 gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656]
 gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82]
 gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
 gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 236

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|110801527|ref|YP_699386.1| vncR, response regulator [Clostridium perfringens SM101]
 gi|110682028|gb|ABG85398.1| vncR, response regulator [Clostridium perfringens SM101]
          Length = 217

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G  +             ++   D++ I   +       L
Sbjct: 3   ILIVEDDKIIREGISEYLSEFGYIIIEAKDGREALSKFNN---DINLIILDIQIPYINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S++P++ ++ +   +  +D F +  D  V KP     + AR+ ++ ++   
Sbjct: 60  DVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNFG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   I V  +    ++ GE   +  +E  IL+YL+ N G+ + + QI   ++   
Sbjct: 120 QIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEIPYDRVIDVYIKELRKKLKL----DCITTIRNVGYKLE 215


>gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
 gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
          Length = 225

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++       + G  ++          + +S    +  ++  L       L+
Sbjct: 4   LVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPI--LDGLK 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  ++ P++ +S   S++  +    +G DD + KP    E++AR   + +R + 
Sbjct: 62  VLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQS 121

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S N +                         L ++E  +L+YLM +    V++  +F +++
Sbjct: 122 SVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 182 S-YHFDPKTNVIDVHIANLRKKLEEGGEPSLIHTVRGAGYVL 222


>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
           [Streptococcus pyogenes]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIPTVRGMGYVI 225


>gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 509

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD  ++ +    L       ++     E    L    + D+  ++  L       +
Sbjct: 3   ILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVML--PKLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R   S V ++ ++   +    L   D G DD V KP + +E+ ARV A+ RR  
Sbjct: 61  SFCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRRGS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S           +  +  +   Q  +  L R+E  ++E  + N+ +  +   I   ++ 
Sbjct: 121 SSPYPTLVCGHLHLDPNLHEVNYQEHLLQLSRKEYLLVELFLRNQKRIYSCRDIIDELWA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E   E  V SHI+ +R+ L+     + +++    GY I+
Sbjct: 181 FDAEPPNEWTVRSHITNIRRNLKAVGADNFLETVYGQGYRIN 222



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + +DD   +      L    GV L    + +         + +   ++ ++   G + L+
Sbjct: 378 LAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMP-SGTEGLD 436

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           L R +      + +P++ +S    ++T    F  G DD + KP
Sbjct: 437 LCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKP 479


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|153810431|ref|ZP_01963099.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174]
 gi|149833610|gb|EDM88691.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174]
          Length = 221

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  L++D   +++  +      G+  +GF                +  ++  L    G  
Sbjct: 1   MIYLVEDDESIRELVVYTLKSQGMDAKGFERPSLFWKELEKEVPALILLDIMLPEEDGIS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R      ++P+I ++   +    +   DSG DD + KP    E+++R+ A  RR 
Sbjct: 61  ILRKLRTRPDTRKIPVIMLTAKGTEYDVVMGLDSGADDYIPKPFRMMELISRIKARLRRA 120

Query: 120 KVSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +                      V  E   L  +E  +L  L+ N G  +++TQ+ + I+
Sbjct: 121 EDKGAEEYHLENLYLCPGRHIVTVDQEPVNLTLKEYEMLVLLLKNSGMVLSRTQLLNQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++   E   V+ HI  LR+KL +    D +++ R +GY I
Sbjct: 181 G-YEFDGESRTVDVHIRTLRQKLGSAG--DLIETVRGVGYKI 219


>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G+ +    +             D+  ++           E
Sbjct: 10  LVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVM--MPVMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR+ SQVP+I ++     +  +   + G DD V KP   RE+++R+ A+ RR    
Sbjct: 68  ALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQ 127

Query: 123 NNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +T          D   +      +   L   E R+L +L+ N G  +    + S +
Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G      E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 188 WGPEYRD-ESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRF 230


>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VC-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 236

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAEALEVLVKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|228996503|ref|ZP_04156142.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228763135|gb|EEM12043.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 210

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 8/215 (3%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++        + G       + +    +  +   D   ++            + + IR  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIM--MPQMDGTSVCKEIRKT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRLKVSNNRAE 127
           S VP+I ++        ++    G DD + KP         +  V   Y + +      +
Sbjct: 59  SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQ 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I +    R  E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A   
Sbjct: 119 FGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDYAGST 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             V++H+  +R KL        + +   +GY  + 
Sbjct: 178 RTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 210


>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +       ++G  +    +      + +  +  V  ++      G    +
Sbjct: 5   LIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVM--MPGIDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           +   IR    +P+I +S        +    +G DD + KP +  E               
Sbjct: 63  VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +  E   I +          G+   L   E  IL  L  N G   +   I
Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           F  ++         N V  HI +LR+K+         +++   +GY I+ 
Sbjct: 183 FKEVWKEKYFEGN-NTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231


>gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030]
 gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
 gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466]
 gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
 gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466]
 gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
 gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
 gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030]
          Length = 235

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L +    D+  ++      G+   
Sbjct: 6   ILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIM--MPGDDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R +S +P+I ++        +   + G DD + K    RE+LAR+  I RR + 
Sbjct: 64  TLCQKLRKNSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQS 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR-------ILEYLMANRGKRVAKTQIF 174
           + N   T  +R      D   +       R  ++       +L   + +    +++  I 
Sbjct: 124 TANSKLTRKVRFDDWLLDTVTRQLTHVASREVKQLSGADLSLLGLFVNHAQSILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227


>gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 246

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + + +        +G  +    S      +      D++ ++           
Sbjct: 13  ILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIM--MPELDGY 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR + ++P+I +S        +     G DD ++KP    E++AR+ A  RR   
Sbjct: 71  QLIARIRENHRLPVIILSAKNGDVDKVTGLGLGADDFISKPFSPIEVVARIKAQLRRYYE 130

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +            +      + E   L   E ++L  LM   G+   K 
Sbjct: 131 LMGAEPAQRSEMLKTVCGSLTLDHEACVLYKRSEAITLGPLEYKLLRLLMEAPGRIFTKR 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           QI+  ++       + N V   IS+LR KL +       + + + LGY +
Sbjct: 191 QIYENVWNEPYLE-DSNTVMVQISRLRDKLEDDPREPRLLITIKGLGYKL 239


>gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
 gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD   + +        +G  ++               + ++  ++  L    G  V
Sbjct: 5   ILVIDDEMHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNISGIDV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           L+  R        P+I ++     +  +   + G DD + KP   +     I + +    
Sbjct: 65  LKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVLRRYN 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +      IR+     +   + +   L  +E  +L+ L+ N+GK +++  +   
Sbjct: 125 MTTNKVEDVLTVKDIRMDLIKHEVTKKDKKIDLTIKEFDLLKLLLQNKGKVLSRNFLLDK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++   E   V+ HI  LRKK+ N      +++ R +GY I
Sbjct: 185 VWG-YEYFGETRTVDVHIRYLRKKIENDGE-KYIETIRGIGYKI 226


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +  +      S      +    + D+  ++       E    
Sbjct: 5   LIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVM--MPHEDGFV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IRA S VP+I ++   +    +     G DD + KP  H E++AR+ A+ RR    
Sbjct: 63  VCQSIRAMSNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++       GPI++    R   V G+  PL  +E  +L   M N G    + Q+   I
Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D       V++HI  LR KL  +     + +   +GY  D
Sbjct: 183 WDI-DYVGGTRTVDTHIKTLRIKLGKEAAA-HIQTVWGVGYRFD 224


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   +       +    R D   ++      G    E
Sbjct: 16  LVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM--MPGMDGFE 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 74  LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 133

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + +    +         +  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 134 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 194 VW-HYDFGGDGNVVESYISYLRRKV-DTHEPQLIQTVRGVGYVL 235


>gi|115523445|ref|YP_780356.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517392|gb|ABJ05376.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 240

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +                  D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAKDASDARAKLQGLHFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARSIRLDSAVPIVMLTARHEPESRIEGLQIGADDYVAKPFEPRELLLRIGNILKRSMP 138

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP     +  +     E+  L  RER +L  L A  G+ V +  +    
Sbjct: 139 VATPQLEQVSFGPYVYHLERGELRQGEEIVHLTDRERDMLRILAAAPGETVPRGAL---- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                + V E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 195 --TGGDTVNERAVDVQINRLRRKIEQDPANPLFLQAVRGIGYRL 236


>gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD A +          DG ++E  NS +     L  S   D   ++      G   
Sbjct: 8   ILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIM--MPGMSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114
           L++ R +RA  Q P++ ++        +   + G DD + KP + RE+      + R   
Sbjct: 66  LDVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +   AE   I + S  R   V     PL   E   L  LM   G+ + K ++ 
Sbjct: 126 NGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEMT 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     EA +   ++ H+S++R+KL      D + S R +GY +
Sbjct: 186 EEVLNRPLEAYD-RAMDVHVSRIRQKLTAVGINDVIKSVRGVGYQM 230


>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         ++  S++   + E           DV  ++          L
Sbjct: 3   ILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIM--MPIVDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA+  QVP++ ++   S+Q  +   D+G DD + KP    E+LAR+  + R+  
Sbjct: 61  EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +          ++ +        +   L  +E  +L Y+M N G  +++ ++   I+ 
Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D + E NV++ +I  LRKK+        + + R +GY +
Sbjct: 180 NYDYSGESNVIDVYIRYLRKKIDEGHSHKLLHTIRGVGYVL 220


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + +    +   +  +++  ++          A  D+  ++          L 
Sbjct: 5   LIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVM--MPHIDGLS 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           L   IR      P++ ++    ++  +   + G DD + KP    E+LARV A+  R   
Sbjct: 63  LLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSEG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   +R+ +  R     GE   L ++E  ILE+L+ N+ + V++  +   ++G 
Sbjct: 123 RHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWGD 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD     N ++ HI  LR+KL +      + + R +GY I+
Sbjct: 183 AFDPFTMSNFIDVHIKNLRRKLGDAGNDKIIQTVRSVGYMIE 224


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R DV  ++  L       L 
Sbjct: 30  LVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVML--PDMDGLA 87

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R   QVP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 88  VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 148 AQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+KL    G    + ++R  GY I
Sbjct: 208 VWS-YDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLI 251


>gi|239944887|ref|ZP_04696824.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291448351|ref|ZP_06587741.1| two-component response regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291351298|gb|EFE78202.1| two-component response regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 231

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGWTRVPILVLSARQTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 123 NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                T            V    +     G    L   E  +LE L+ N G+ V++ Q+ 
Sbjct: 123 GQEGGTEDIAVVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNSGRLVSQKQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 QEVWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 229


>gi|255102528|ref|ZP_05331505.1| two-component system, response regulator [Clostridium difficile
           QCD-63q42]
          Length = 217

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G ++             +SA   ++ +   +       L
Sbjct: 3   ILIVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNSA---INLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     +  R+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKVRIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELDVLKCLLDNDGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEIPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +   +      E           D++ ++  L   G    
Sbjct: 4   ILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVML--PGIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
           ++   +R  + ++ +I ++        +   + G DD + KP +        + + R   
Sbjct: 62  KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTG 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              ++K + ++    P  +    +          +  +E  +++  + N  K  ++ ++ 
Sbjct: 122 DESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           + I+G +D   +  +++ +I +LR K+ +     + +++    GY 
Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRSKIEDTPSEPEFIETIWGKGYR 226


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++D  +      G  +    + E    +              ++  G    
Sbjct: 4   ILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMDGF 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR  +S + +I ++        ++    G DD V KP    E++ARV A++RR  
Sbjct: 64  EVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRRVT 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  ++GP  +    R     G V  L + E +ILEY   N    + +  
Sbjct: 124 VAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTALGRQD 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           I + ++G      +  +V+ +I +LR KL +     + + +    GY 
Sbjct: 184 ILNKVWGEG-YFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGYK 230


>gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
 gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  +E   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGL--PGMGGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +       P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGYLFNE 222


>gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 244

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +          +G  +E  ++ +   E L  S   D   ++      G   
Sbjct: 8   ILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIM--MPGMSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA  QVP++ ++        +   + G DD + KP + RE+ AR+ AI RR +
Sbjct: 66  LDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          +   I + +  R   V     PL   E   L  LM   G+ ++K 
Sbjct: 126 NSLGNGLDTKPIVHTQLHGIELDTGTRTALVNNTPLPLTSAEFNALSLLMTRAGQTISKQ 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +     EA +   ++ HIS++R+KL ++   D + S R +GY +
Sbjct: 186 DMTQEVLNRPLEAYD-RAMDVHISRIRQKLSSEGINDVIKSIRGVGYQM 233


>gi|330987464|gb|EGH85567.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010636|gb|EGH90692.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 249

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|315282416|ref|ZP_07870834.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
 gi|313613939|gb|EFR87665.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDYDIAIIDLML--PNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    T                 +  L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 AAPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D 
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226


>gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3
           str. Ether]
 gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
 gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
          Length = 239

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R            +A 
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKPLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|254517714|ref|ZP_05129770.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911463|gb|EEH96664.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 241

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G  +   N  +  E L  +   D+  ++       +   
Sbjct: 23  ILVAEDEKQISKVMKLYLEKEGYEVTLANDGKVAEDLIENNTYDLVILDIM--MPNKDGW 80

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +++ +++  +I  S     +  +  F+ G DD + KPI  RE++ RV      +K
Sbjct: 81  YLLKKVKSLNNKTQVIITSARGEEEDRIFGFELGADDYMVKPISMRELVLRVGLRINSVK 140

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +       RV  + R      +   L  +E  +L +L+ N+ +   +  + ++++G
Sbjct: 141 NEYTKEIKLGNLRVDDNNRRVFENEKEIILTPKEYDLLMFLIKNKNRVFTREDLITSVWG 200

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   +   V++H+ KLR+KL      + + +   +GYS+
Sbjct: 201 -YDFYGDTRTVDTHVKKLREKLE--FFRENLKTVWRVGYSL 238


>gi|163858929|ref|YP_001633227.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262657|emb|CAP44960.1| two-component response regulator [Bordetella petrii]
          Length = 232

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       +    ++          L    + D+  ++  L   G    
Sbjct: 6   ILVIEDERKLAEYLKRALSEHNYVVDIAMDGISGLHLAQETQYDLILLDVML--PGRDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   +VP++ ++    L+  +     G DD + KP    E+LARV A+ RR   
Sbjct: 64  SVLAELRKGDRVPILMLTARDKLEDRVRGLQDGADDYLAKPFALSELLARVLALSRRQSN 123

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S        +            R     G    L  +E  +L  LM  +G+ +++  +  
Sbjct: 124 SVIEPNRQNVLKVGDLELDLLRRRASRGGVRLDLTAKEFTLLALLMKKQGQVLSRLDLAE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +     NVVE  + +LR K+ +      + + R +GY ++
Sbjct: 184 QVWDI-NFNSNTNVVEVAVRRLRGKVDDPFPTKLLHTVRGMGYVLE 228


>gi|2443260|dbj|BAA22330.1| DmsR [Rhodobacter sphaeroides]
          Length = 232

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  + +         +   +      E    + +    DV  ++      GE  L 
Sbjct: 8   LVVEDDPVSRQTLAMYLRKENHEVSEARDGEQMRRVFARGDVDVVMLDIN--MPGEDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+V +I ++        +   + G DD V KP + REIL R   + RR+   
Sbjct: 66  ILRELRRQSEVGIIMVTSRKEDVDRIVALELGADDYVTKPYNMREILPRAKNLARRVAAL 125

Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  P   F             +  G    L R E  +L    A+ G+ + + Q+ +
Sbjct: 126 RLVRPDQPATTFVGWTLDPAHWTLTDPAGHPVKLTRAEFELLATFAAHPGQVLTRDQLMN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G       +  ++  + +LR+K+  +      + +   +GY  
Sbjct: 186 HV-GRRGHDTLDRTIDVLVRRLRRKIEADPSDPRLIVTVHGIGYVF 230


>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 250

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   + D        +G  +      E    L +  + D+  I+          
Sbjct: 23  LILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIM--MPVLDG 80

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR +S +P+I +S        +   + G DD + KP +  E++ARV +  RR K
Sbjct: 81  IRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYK 140

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N +   P R       +  + ++  V GE+  L   E  IL  L  N GK  +  +I
Sbjct: 141 KLGNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSIDEI 200

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 201 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 249


>gi|295702508|ref|YP_003595583.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800167|gb|ADF37233.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G   +   ++ +    +  +   D+  ++  L    +  
Sbjct: 6   ILLVDDEIAIVKMLETVLKKEGFNQIYKAHTAQEALDVLHNQTIDIILLDVML--PDQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------------REI 108
            ++   IR  S   ++  +   S    L  F  G DD V KP +             R+ 
Sbjct: 64  FDICPKIRELSNAYILFTTAKVSDLDVLTGFAMGGDDYVTKPFNPLEIAARIKARLRRKQ 123

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                   R    S+NR E     V     +  V G++   P +   +L +   N    +
Sbjct: 124 ALTEGTSIRTEPQSSNRYEFDRFTVDESAGELIVDGQMVSCPAQVFLLLLHFCKNMNIVL 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +K+Q+  A++G +++ V++N V  HI ++R+++ +       + + R LGY +
Sbjct: 184 SKSQLLEAVWG-YNQFVDDNTVTVHIRRIRERIEDNPSSPKHLVTVRGLGYKL 235


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIML--PKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           E+ + +RA+    P++ ++   +++  +   D G DD + KP    E +    A + R+ 
Sbjct: 61  EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGYVL 220


>gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++         G+     +              D+  ++          L
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIG--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP++ +S        +   + G DD V KP   RE++ARV  I RR + 
Sbjct: 63  EVCRRLRHTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRARP 122

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +                            +   L   E  IL+  +A     + +  + +
Sbjct: 123 AAPEPADDRQFAHGKLILVPASHGAAFDSKPLSLTGIEFSILKGFLARPAHVLDRDAVMA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             Y      V +  V+SHI  +R KL      D +++   +G+ +
Sbjct: 183 NAY-AGKVHVADRTVDSHIRNIRAKLAAAGCLDAIETVHGVGFRL 226


>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 230

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +++         G        +       + A  D+  ++  L G  G ++
Sbjct: 6   ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLPGTSGVEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
               R       +P+I ++     +  +   +SG DD + KP   RE++AR+ A    R 
Sbjct: 66  ARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRRRA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++S+       + +          G+   L   E R+L + M +  +  ++ Q+   ++
Sbjct: 126 PQMSDETVRVEGVELSPTTHRVSANGQNVDLGPTEFRLLHFFMTHVERVYSRAQLLDQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     VEE  V+ HI +LR+ L        V + R  GY  
Sbjct: 186 GDH-VFVEERTVDVHIRRLRQALEPSGLDGLVQTVRGSGYRF 226


>gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
 gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
          Length = 223

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   +  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL+ +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDTN 223


>gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
 gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D             ++G   + F++        S  + D+  ++  L    G ++
Sbjct: 4   ILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  +  R  
Sbjct: 64  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 122 SQTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 182 I-NFDSDTNVIDVAVRRLRSKIDDDYEPKLIHTVRGAGYILE 222


>gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   V          +   ++             S   D+  ++  L       
Sbjct: 5   LILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPA--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR  S VP++ ++     Q  +   DSG DD V KP    ++LARV A+ RR+ 
Sbjct: 63  YETCRRIREFSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRRIP 122

Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   G   + +    R+ +V+ +V  L   E ++L  L  + G+ V   ++  +I+
Sbjct: 123 PQRPIITAGEGLMVLDRQRRELKVKDKVIDLTPTEYQLLILLADSVGQVVPHEKLLGSIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G   E+ + + ++ +I  LR+KL +       + ++  +GY +
Sbjct: 183 GSGKES-DHDSLKVYIWHLRRKLEDNPRQPKILLTEWGVGYRL 224


>gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
 gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  + R DV  I+  L  +    L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +       L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDIPLLHTVRGAGYML 221


>gi|186684290|ref|YP_001867486.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466742|gb|ACC82543.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 239

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    +       +  ++  L        
Sbjct: 11  ILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNL--PDVNGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
            L + +++ + V ++ ++        +    +G DD + KP         I A +  I  
Sbjct: 68  SLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIRY 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +  +GR+  +  ++  L   E  IL +L ++  +  ++ Q+   I
Sbjct: 128 INPSPTQRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQLIQKI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKK+  +    + + + R  GY  +
Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFE 231


>gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S                 R D+  ++  L   G   +
Sbjct: 4   ILVVEDEQRLASILADYLHAAGYSTHCLGEGRGVVAWVRGNRPDLILLDLML--PGRDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        L   + G DD V KP   RE+           + 
Sbjct: 62  EICKEIRTFSTVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREV--VARVKAVLRRT 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S        +RV +      + G    L   E ++L +L+A+ G+  ++ Q+   +Y   
Sbjct: 120 SARTPAPHGLRVDASTMRVSLDGHHLDLTAVEFKLLAFLLAHPGRIYSREQLMEGMY-PD 178

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SHI KLR+KL   + G + + S   +GY+ D
Sbjct: 179 QRIVNDRTIDSHIKKLRRKLDLARSGCNLIRSVYGVGYTFD 219


>gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 241

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +   +             ++    +  ++  L   GE  L
Sbjct: 9   LLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLML--PGESGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+   VP+I ++        +   +SG DD V KP + RE+LAR+ A+ RR   
Sbjct: 67  EVARWLRSQDNVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVD 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
             ++ +    R                         L   E  +L  L+    + + +  
Sbjct: 127 VEDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDM 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 187 LLELLRGRQAGPFD-RAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVL 234


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +E             S   D+  ++  L       LE
Sbjct: 5   LLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGL--PEMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA     P++ ++       T+   D+G DD V KP    E+           + 
Sbjct: 63  VARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +R+ +D R   +  +   L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 121 QSETPVVQGVRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGFRFE 220


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D A + +  I  F  +   +      E    L      D+  ++  +    G +V 
Sbjct: 7   LLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESLSGIEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++ 
Sbjct: 67  RRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + + + G      G+V PL   E R+L++ + + G   ++ ++  +++G
Sbjct: 127 ALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             D  +E   V+ HI +LRK +       D + + R  GY++D
Sbjct: 187 Q-DSDIELRTVDVHIRRLRKAINADGRHRDIIRTVRSAGYALD 228


>gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alteromonas macleodii
           ATCC 27126]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V          +G                SS   D   ++  L         
Sbjct: 4   LLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVML--PELDGFS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           +   +R      P++ +S    ++  +    +G +D + KP    E+       A   + 
Sbjct: 62  VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +    R      +   L  +E ++LE L+ ++GK V ++ +   ++ 
Sbjct: 122 GEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 230

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    +S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  DTCKKIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGILWDEAKHFASVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++   +      +      D+  ++  L   G    
Sbjct: 3   ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++    +   +   + G DD + KP    E++ R+  + RR  +
Sbjct: 61  EIMRALRTRRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +        ++    R    +G   PL  +E  +L  L+  +G+ +++TQI S ++ +
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+ +      + + R +GY+ 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTF 219


>gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 243

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            +    +L+           D+  I+  L       L
Sbjct: 15  ILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTL--PDGDGL 72

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            L + +  A  + P + ++   S    +   +SG DD + KP    E+ ARV        
Sbjct: 73  MLCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGH 132

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    + +   I +  D R+         L  RE  +L ++  +  +  ++ Q+  A+
Sbjct: 133 QTEHEEQQLDFNGITINCDTREVIAFDTQLELTAREFDLLLFMAKHPKQVFSRLQLLEAV 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G +  +  E+ V SHI++LR KL +     + V +   +GY  
Sbjct: 193 WG-YSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGYKF 235


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      N+         S   D   ++  L       L
Sbjct: 4   ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R     P+I ++   S+   +   D G DD + KP              R +  
Sbjct: 62  EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A   +L               ++       G+   L +RE  +L  L+ N+   V +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYM 229


>gi|260914634|ref|ZP_05921100.1| transcriptional regulatory protein OmpR [Pasteurella dagmatis ATCC
           43325]
 gi|260631233|gb|EEX49418.1| transcriptional regulatory protein OmpR [Pasteurella dagmatis ATCC
           43325]
          Length = 260

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +    +F + G ++    +      L  +    +  ++  L       L
Sbjct: 28  ILVIDDDVQICELLTDIFEEHGYTVVTAQTGTQALSLLQTTHFSLIFLDLIL--PDVNGL 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ S  P+I +S   S    +   + G DD + KP + R ++AR     RR   
Sbjct: 86  VLLQRLKSISSAPVIMLSGLDSESDIVVGLEMGADDYIAKPFYPRVVVARAKVALRRHHP 145

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
                         +    + +             L + E  +L  L+++  K +++ ++
Sbjct: 146 QLFTNPNIQQGFTFNHWVLDTENHKLFSPQKQEIDLTQGEYTLLHALVSHAQKVLSREKL 205

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +       + +  ++  I +LRKK+  N      + + R +GY  
Sbjct: 206 LE-LTHSESLEIFDRTIDVLIMRLRKKIEPNPKAPTYIQTVRGMGYLF 252


>gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
 gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  ++      L  +   D+  ++  L        +
Sbjct: 4   LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIML--PDVNGWD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV         
Sbjct: 62  IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++ 
Sbjct: 122 VIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 182 M-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
 gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
          Length = 236

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   ++D                +++     L    R D+  ++  L  G G ++
Sbjct: 6   ILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLPGGSGIEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   +   A   +P+I ++   +    +   + G DD + KP   RE++AR+ A     +
Sbjct: 66  LRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRRSQ 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N R     + + +DGR   +  +   +   E  +L + M +  +  +++Q+   ++
Sbjct: 126 GMEDNQRLAFEELLLDADGRRVYLADKPISMGPTEYNLLYFFMTHPERAYSRSQLLDHVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           G  +  VEE  V+ HI +LRK L++        + + R  GY  
Sbjct: 186 GA-NVYVEERTVDVHIRRLRKALQSHGKDYSGLIQTVRGTGYRF 228


>gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG
           19424]
 gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424]
          Length = 231

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +     DG+  E             +A+ D+  ++  L        
Sbjct: 9   ILVVEDEQAIADTILYALRTDGMLAEHCTLGGDALACLRAAQADLLILDVGL--PDLSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R  S  P+I ++        +   + G DD V KP   RE    +  +    R 
Sbjct: 67  EVCRTLRTFSDAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E        DG      G    L R E  +L +L+A+ G+  ++ Q+  A++
Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
                   +  V++HI  LR KLR     G + + + R +GYS+
Sbjct: 187 -AGALDTSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229


>gi|167465417|ref|ZP_02330506.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383772|ref|ZP_08057523.1| two-component response regulator YkoH-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151984|gb|EFX44927.1| two-component response regulator YkoH-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 229

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++E  N       L       +  ++           
Sbjct: 5   ILVVDDDEKITSMLRRGLAFEGYTVEVANDGSQGLRLMMEYDPQLMILDVM--MPHVDGW 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116
           E+ R +R   S VP++ ++    +   +   D G DD + KP         +   +    
Sbjct: 63  EVCRRVREGGSDVPILMLTAKDEISDRVKGLDIGADDYLVKPFALEELLARVRVLLRRRS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R +   N+     I +  D R+   + ++  L  +E  +L   + N  + +++  I   
Sbjct: 123 ERPERPTNKLTYQDIAMDLDTREVFREDKLIELTTKEFDLLHLFLLNPRRVLSRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K         + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIALLRQKTEEHGHKRIIQTVRGAGYVL 225


>gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N       +   I +  D R+  +  +   L  RE  IL+ LM    K   K  +F +
Sbjct: 125 FSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLD 229


>gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 223

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    ++   D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGL--PEMDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    R   + +P++ ++        +  FD+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRRDGRVMPVLILTARDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRAT 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E GP+RV +      V G    L   E R+L Y+M ++G+ +++T++   +Y 
Sbjct: 121 GHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSYMMHHQGRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRRKL----GKDVIETVRGLGYRL 216


>gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator
           [Dechloromonas aromatica RCB]
 gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dechloromonas aromatica RCB]
          Length = 225

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++          L  +   D++ ++  L   G    
Sbjct: 3   ILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVML--PGIDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + IR A   +P++ ++    ++  +   + G DD + KP    E+LARV        
Sbjct: 61  QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDGFEPKLIRTVRGMGYVLE 222


>gi|78046340|ref|YP_362515.1| OmpR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034770|emb|CAJ22415.1| two-component system regulatory protein, OmpR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 259

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 29  LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 147 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 207 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252


>gi|47567681|ref|ZP_00238391.1| two-component response regulator [Bacillus cereus G9241]
 gi|229156443|ref|ZP_04284534.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|47555658|gb|EAL13999.1| two-component response regulator [Bacillus cereus G9241]
 gi|228626946|gb|EEK83682.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 215

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F  +   +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKEDFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKYSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 220

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L        
Sbjct: 3   LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGL--PTLSGF 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +  + S +P++ ++   + +  +   D G DD + KP    E+ AR+ A + R  
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++E  E N +E HI  LRKK         + + R +GY ++ 
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSTLIRTIRGVGYLVEE 218


>gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
 gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVML--PGLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+    R      R
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      + +    R     G    L  +E  +LE L+   G+ + ++ I S ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRLKIDEGQDVKLIQTVRGMGYVLE 222


>gi|229588502|ref|YP_002870621.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360368|emb|CAY47225.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 230

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +    ++G  +E          L +S   D+  ++ +L    E  +
Sbjct: 5   ILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWL--PVEDGI 62

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R   + +   P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 63  QLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPG 122

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    E   IR   + +     G    L  +E  +L + + N GK +++T+I+  ++ 
Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                   N +E H+ +LR KL    G   + + R  GY ++
Sbjct: 183 DS-YDGLSNTLEVHVKELRHKLEAC-GPRVIQTLRGRGYVLE 222


>gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 246

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVML--PGFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +   IR    +VP + ++   ++Q  +    +G DD V KP    E    L R+      
Sbjct: 83  VLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +  D R+    GE   L   +  +L YLM N  + V+K QI   ++
Sbjct: 143 AAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+        + + R  GY I
Sbjct: 203 D-YDFGGQANIVELYISYLRKKIEAN-HPPMIHTIRGAGYVI 242


>gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVML--PGLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+    R      R
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      + +    R     G    L  +E  +LE L+   G+ + ++ I S ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRLKIDEGQDVKLIQTVRGMGYVLE 222


>gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++     E  ++L  +   D   ++  L    +  +
Sbjct: 3   LLVVEDDKDLNRQIVQALEQSGYAVDRAFDGEEGQYLGDNEPYDAVVLDIGL--PKKDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    RA  + +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEEWRAAGRDMPVLILTARDRWSEKVQGFDAGADDYVAKPFHMEEVLARIRALLRRRT 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G +R+ +      V G    L   E R+L YLM + G+ V++ +I   +Y 
Sbjct: 121 GHATNELVCGAVRLDTKSGRVVVDGAPVKLTSHEYRLLAYLMHHSGRVVSRGEIIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + N VE  + +LRKKL    G D + + R LGY 
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKL----GVDLIQTVRGLGYM 215


>gi|107099448|ref|ZP_01363366.1| hypothetical protein PaerPA_01000460 [Pseudomonas aeruginosa PACS2]
 gi|218889203|ref|YP_002438067.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa LESB58]
 gi|296386961|ref|ZP_06876460.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAb1]
 gi|313111910|ref|ZP_07797700.1| two-component response regulator CreB [Pseudomonas aeruginosa
           39016]
 gi|218769426|emb|CAW25186.1| two-component response regulator CreB [Pseudomonas aeruginosa
           LESB58]
 gi|310884202|gb|EFQ42796.1| two-component response regulator CreB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            G+  EA  E  ++SHI  LR KLR      + + + R LGY
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222


>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 246

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G+ +    +             D+  ++           E
Sbjct: 10  LVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIM--MPVMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR+ SQVP+I ++     +  +   + G DD V KP   RE+++R+ A+ RR    
Sbjct: 68  ALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRHYTQ 127

Query: 123 NNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +T          D   +      +   L   E R+L +L+ N G  +    + S +
Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G      E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 188 WGPEYRD-ESHYLRLYITYLRQKIEEDPSNPKYILTERGVGYRF 230


>gi|330965404|gb|EGH65664.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 230

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALRFGPLTVDLAYRRVLLDGQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|317499546|ref|ZP_07957810.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893200|gb|EFV15418.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F                       + D+  ++          +
Sbjct: 5   ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKI-EMKPDIILLDIN--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R+IR+    P++ ++        ++   SG DD + KP   RE+ AR+        R
Sbjct: 62  EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   + G      + E +I+E+L  + G+   K +I++ + 
Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQVC 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +   +   + ++RKK+ +    + +++   +GY 
Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221


>gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
 gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E              A  D+  ++           
Sbjct: 4   LLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEYDLIIMDIM--MPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
              + IR   Q P+I +S        +  F+ GVDD V KP   +E++ R          
Sbjct: 62  SAVKEIRKDVQTPVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILKRYHG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +      +++    R   +  +   +  +E  +L YL+ N G  + + Q+   
Sbjct: 122 DVNTRKKDIYTYEGLKIDFTARKVFIDDKEVEMSPKEYVLLFYLVRNEGIALTREQLIHD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L++      + + R +GY  +
Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLQDYS--RLIITLRGVGYRFE 223


>gi|161501958|ref|YP_262771.2| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +        Q ++  D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 121

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +  +      +G+   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 181 MADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 219


>gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
 gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
          Length = 226

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 3   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R +R      P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 223


>gi|330875625|gb|EGH09774.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 230

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + GP+ V    R   +  +   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDRPESALKFGPLTVDLAYRRVLLDDQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 234

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGE 58
            +L++D   V     A+    G  +    + E          +    V  ++  L    +
Sbjct: 3   LLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGL--PDQ 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR
Sbjct: 61  DGYEVCGKIRKRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVARR 120

Query: 119 LKVSNNRAETGPIRVFS----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              ++  A T      +            R   V G   PL R+E  +L  L    G   
Sbjct: 121 TGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI S ++           +E H++ LR KL        +++ R +GY +
Sbjct: 181 RREQIISEVW-RTSWEGTGRTLEVHVASLRSKL---GMPALIETVRGVGYRL 228


>gi|238059125|ref|ZP_04603834.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237880936|gb|EEP69764.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 227

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +              +           L +    D++ ++  L       +
Sbjct: 4   ILLVDDDAPLLRALRINLTARRYEVTTATDGTTALTLAARTPPDLAIVDLGL--PDLDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  +++P+I +S   +    +D  D+G DD + KP    E+LAR+ A  RR   
Sbjct: 62  TVVEGLRGWTRIPIIVLSARDTESAKVDALDAGADDYITKPFGMNELLARIRAALRRATP 121

Query: 122 SNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       +  F+      R     G    L   E  +LE L  + GK V+  Q+   +
Sbjct: 122 ADTGPAVVAVGDFTIDLAAKRLTTSTGHDVRLTPTEWHLLEILARHPGKLVSHRQLLHEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      E N +  H + LR+K+  +      + ++  +GY +
Sbjct: 182 WG-PAYDTETNYLRVHFANLRRKIEPDPTRPRYLVTEPGIGYRL 224


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +      LQ     D+  ++  L       L+
Sbjct: 47  LLVEDDPAIAEPLARALGREGYEVSAQTTGGAA--LQQVGGCDIVILDLGL--PDMDGLD 102

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IRA    +P++ ++        +   DSG DD V KP    E    +  +      
Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E   +RV               L  +E  +L  L+ + G  V++ Q+   ++
Sbjct: 163 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 222

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D +     ++ H+S LR+KL +       + + R +G+  +
Sbjct: 223 G-SDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 265


>gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
 gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G       SL+      ++   D+  ++  L        +
Sbjct: 6   LIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNL--PDGSGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIY 116
             + I A   +P+I ++    +   +   + G DD + KP H +E+        R     
Sbjct: 64  FCKDINAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEKS 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       I++  + R      EV  L  +E  +LE+ + NR K  ++ Q+   
Sbjct: 124 ASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLIDN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+  F    +   V+ HI ++R KL        +++   +GY +
Sbjct: 184 IW-EFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226


>gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator,
           Winged helix family [Thiobacillus denitrificans ATCC
           25259]
          Length = 242

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +          L  S   D+  ++  L   G    
Sbjct: 15  ILIVEDEPKTGAYLRQGLTEAGFVTDLARDGWDGLELAKSGHYDLMILDVML--PGLDGW 72

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           ++   +R      P++ ++    ++  +   + G DD + KP    E+LARV       +
Sbjct: 73  QVLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMRRGQ 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +   +   + +    R     G    L  +E  +LE  +  +G+ + ++ I S ++
Sbjct: 133 AALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIASQVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  + +LR K+        + + R +GY ++
Sbjct: 193 DM-NFDSDTNVIDVAVRRLRVKIDEGFDAKLIHTVRGMGYVLE 234


>gi|66045272|ref|YP_235113.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255979|gb|AAY37075.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 33  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 90

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 91  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 150

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 151 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 211 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 254


>gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 237

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G           +           +       ++ ++          +
Sbjct: 6   ILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEEIHLAIVDIM--MPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 64  TMTIKLREKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRRYRK 123

Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + V  +  +  V      +   E +IL  L+ N G+  +
Sbjct: 124 FMEKLQAKESERTDTIYTIGGLEVNENTFEVRVDDTPVKMTPMEFKILLLLIKNPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +I+  ++   + A+    V  H+  +R+K+  N      +     +GY I+ 
Sbjct: 184 ADEIYERVWN--ERAINTETVMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 235


>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 240

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 87/231 (37%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +      +    L ++   D+  +   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMDGM 64

Query: 62  ELPRII-----RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110
           ++ + I        ++VP+I ++        +   + G DD + KP   RE+      + 
Sbjct: 65  QVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVI 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R      +    ++    G + VF D  +  +      L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|330505552|ref|YP_004382421.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01]
 gi|328919837|gb|AEB60668.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01]
          Length = 230

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A ++             +    + E      +    DV  ++  L        
Sbjct: 7   ILLIDDEAQIRKFLRIALSAQDYRVLEAVNGEDGLAQAALHNPDVVVLDLGL--PDLDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV       + 
Sbjct: 65  QVLRGLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQGQG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R   ++G    L  +E  +L  L  + G+ V + Q+   I+
Sbjct: 125 REALPASIACGALSIDLAYRRVSLEGAEIALTPKEYAVLALLAQHLGRVVTQQQLLRDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPSH-VGDSHYLRVVVGHLRQKLGDDPAAPRYLITEAGVGYRL 226


>gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +      L  + G  +    S    +      + D+  ++  L   G    
Sbjct: 6   ILIVEDDADINSLLEKLLTNAGYHVRPAFSGSEGKMCLEQYQYDLVLLDLML--PGVTGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
            L   IR  S VP+I IS   S+   +D    G DD + KP          E   R A  
Sbjct: 64  ALVAQIRRSSTVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRRAVA 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     S     +G + + +D  +  ++ +   L  RE +IL  LM++  K   +  +F+
Sbjct: 124 FSEAGGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFT 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++       E+N V  HIS +R KL         + +   +G+ ++
Sbjct: 184 QVW-EDAFLGEDNTVNVHISNIRSKLAKIDPDTSYIKTVWGIGFKME 229


>gi|126665480|ref|ZP_01736462.1| response regulator DrrA [Marinobacter sp. ELB17]
 gi|126630108|gb|EBA00724.1| response regulator DrrA [Marinobacter sp. ELB17]
          Length = 233

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G++    N  +           D+  ++  L   G   L 
Sbjct: 6   LIIEDNPAIAELVSMQVSDLGMAPVLANRGDDGLARFRQGGIDLVVLDLML--PGLDGLA 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R IR A   VP++ ++   +    +   + G DD + KP    E+ AR+ A++RR   
Sbjct: 64  VCREIRTAPDYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELGARIKALFRRVDA 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N       +R+    R   V      L  RE  +L +  ++RG+  ++ Q
Sbjct: 124 LSARATDAPENREIAVDGLRIDPLRRRVFVNNAEVELTAREFDLLWHFASHRGRVFSRAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A++G ++    E+ V +HI++LR K+  +      V +   +GY  
Sbjct: 184 LLDAVWG-YNHQGYEHTVNTHINRLRNKIETDPAEPRYVQTVWGVGYRF 231


>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 240

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G            +    +   DV  ++  L   GE  L 
Sbjct: 8   LIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWML--PGESGLA 65

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117
           L +  RAH +   +P+I ++        +   D+G DD +             R     R
Sbjct: 66  LAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRRR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G + + +        G+   L   E ++L+YLM++  +  ++ Q+   +
Sbjct: 126 APEQVGGVVSVGALSLDTATYRVTFAGQPLKLGPTEFKLLQYLMSHAERVHSRGQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L  + G   V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGAQAG-QMVETVRGAGYRL 226


>gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   A    +G  +    +      L  S    +  ++  L     +  E
Sbjct: 5   LIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLML--PDIQGEE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + +IIR  S V +  ++   +L+  ++  ++G D+ + KP   RE    +  +       
Sbjct: 63  ICKIIRDKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGAN 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +S    + G I+++ D R  +V+G+   L   E  IL  L  N+GK + + Q+   ++G
Sbjct: 123 NISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVFG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + D    +  V+ HI  +RKK+         + +   LGY  
Sbjct: 183 M-DFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGYKF 223


>gi|242241118|ref|YP_002989299.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
 gi|242133175|gb|ACS87477.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
          Length = 223

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++   S     +       D   ++  L   G    
Sbjct: 3   ILVVEDDVSTGDYLKKGLTEAGYAVDLARSGTEGLFNALEHGYDAIILDVML--PGLSGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +L  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+   + R + 
Sbjct: 61  QLIEMLRKKSDVPVLFLTARDQLHDRIRGLELGADDYLIKPFSFTELVLRIRTLLRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +R+    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGYVCE 220


>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 230

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR+ S VP+I ++        +     G DD + KP H  E+         R   
Sbjct: 62  ETCNRIRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGEL-LARIEAVLRRSN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +     I          V  +   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHEQLRYKGILWDEAKHFITVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           D   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 DTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYR 219


>gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 214

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
 gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
          Length = 235

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ ++          + 
Sbjct: 7   LIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVM--MPRMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR +  
Sbjct: 65  MVVRLREKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRKF 124

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G + +  D  +  V GE   L   E +IL  LM + G+  +  +
Sbjct: 125 AEKLNEKEASANVHVIGGLEINEDTVEAAVDGEPVKLTPIEYKILLLLMKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + A+  + +  HI  +R+K+  N      +     +GY I+ 
Sbjct: 185 IYERVWN--ERAITTDTIMVHIRNIREKIEINPKEPKYLKVVWGVGYKIEK 233


>gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 232

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  S    +  ++  L   G    
Sbjct: 3   LLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +   +R      P++ ++   S+   +   + G DD + KP    E+LARV       +
Sbjct: 61  NVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R     + V +  R  E  G+   L ++E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLE 222


>gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
          Length = 224

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +    A+  + G              L  +   D+  ++      G    
Sbjct: 4   ILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHVDLVILDIM--MPGMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E  R +RA     P++ ++     +     F  G DD + KP+   E++ R+ A + R  
Sbjct: 62  EFTRQLRATDYTLPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+  R     + +  D        E   LPR+E  +L  L++  GK   + Q+   I+G
Sbjct: 122 IVNERRITIADVCLDYDSLTVSRGDESQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +   ++N +  HI++LRK+  +   F  +++ R LGY 
Sbjct: 182 M-ESQSDDNTINVHINRLRKRFEDYPEFT-IETIRGLGYK 219


>gi|70729143|ref|YP_258879.1| OmpR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343442|gb|AAY91048.1| DNA-binding response regulator, OmpR family [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I       +   G            +   DV  ++  L   GE  L 
Sbjct: 28  LIVDDDVPIRELLIDYLARFNIHASGVTDGAAMRQALQAEHFDVVVLDLML--PGEDGLS 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 86  LCRWLRTESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDD 145

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +                  +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 146 RSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 206 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKSPQLIKTVRGEGYLFD 249


>gi|15596996|ref|NP_250490.1| two-component response regulator, ParR [Pseudomonas aeruginosa
           PAO1]
 gi|107101231|ref|ZP_01365149.1| hypothetical protein PaerPA_01002264 [Pseudomonas aeruginosa PACS2]
 gi|218892248|ref|YP_002441115.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234893|ref|ZP_04928216.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719]
 gi|254240192|ref|ZP_04933514.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192]
 gi|9947782|gb|AAG05188.1|AE004606_2 two-component response regulator, ParR [Pseudomonas aeruginosa
           PAO1]
 gi|126166824|gb|EAZ52335.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719]
 gi|126193570|gb|EAZ57633.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192]
 gi|218772474|emb|CAW28256.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 235

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +     +     G  +   +  +         +  V  ++  L   G+  L+
Sbjct: 10  LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLML--PGQNGLQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R IR  + +P++ ++        +   +SG DD V KPI        L  +   +  L
Sbjct: 68  VCREIRRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPL 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G + +    R+ E++G    L   E  +L  L +  G+ +++ +I + I G
Sbjct: 128 PASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIRG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +         V+  ISKLR KL++       + +    GY  +
Sbjct: 188 IG-FDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFN 229


>gi|322516504|ref|ZP_08069422.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124973|gb|EFX96387.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 226

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKILEQWGYEVVLVEDFMEVLSIFVKEEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++
Sbjct: 122 FGKDQSLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKEFIETKKGVGY 220


>gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++ G        G +++   S      L  S +  +  ++  L        
Sbjct: 3   LLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGL--PDRDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R      P++ ++   +L+  +D  D+G DD + KP    E+ AR  A+ RR +
Sbjct: 61  TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +      +       +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E HI  LR+KL    G D + + R +GY ++ 
Sbjct: 181 WND-DPGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLEV 218


>gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1
           str. 16M]
 gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330]
 gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str.
           9-941]
 gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
           25840]
 gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
 gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
 gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19]
 gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
 gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457]
 gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
           A]
 gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6
           str. 870]
 gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3
           str. Tulya]
 gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str.
           513]
 gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str.
           686]
 gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           M163/99/10]
 gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           B2/94]
 gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13]
 gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4
           str. 292]
 gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           M292/94/1]
 gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1]
 gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94]
 gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9
           str. C68]
 gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99]
 gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
 gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94]
 gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
 gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
 gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
 gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
 gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13]
 gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
 gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1]
 gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1
           str. 16M]
 gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330]
 gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
           25840]
 gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
 gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
 gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
 gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC
           23457]
 gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
           A]
 gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
 gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94]
 gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
 gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
 gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
 gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
 gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1]
 gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
 gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13]
 gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28]
 gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90]
          Length = 239

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R            +A 
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 240

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +      +    L  +   D+  +   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMDGM 64

Query: 62  ELPRII-----RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110
           ++ + I        ++VP+I ++        +   + G DD + KP   RE+      + 
Sbjct: 65  QVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVI 124

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R      +    ++    G + VF D  +  +      L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|330980754|gb|EGH78857.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 258

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 32  LIVDDDVAIRELLCDYLTRFNINPRGVTDGTQMRQALTVETFDVVVLDLML--PGEDGLS 89

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 90  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 149

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 150 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 209

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 210 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 253


>gi|294667110|ref|ZP_06732335.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603120|gb|EFF46546.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 259

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 29  LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 147 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 207 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V       F  +G  +    +       Q+S + D+  ++          +
Sbjct: 4   ILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIK-QASRQPDIILLDIN--MPEADGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +   P++ ++        +  F +G DD + KP    E+ AR+AA  RR   
Sbjct: 61  EVCRRIRDYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRRENR 120

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  + +    G + V          GE   L ++E +ILE L  N G+  +K +I+  ++
Sbjct: 121 SAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +D   + +VV  HI +LR KL        +++   +GY 
Sbjct: 181 S-YDAEGDSSVVAEHIRRLRSKLSKYGEGSHIETVWGMGYK 220


>gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D      G+ G   E     E      +S++ DV  ++  L       L 
Sbjct: 4   LIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRML--PKLDGLT 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           L   +R      P++ +S   ++   +    SG DD + KP    E++ARV         
Sbjct: 62  LVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGPT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +      G + +          GE   L  RE R+LEYLM + G+ V +T +   ++ 
Sbjct: 122 ERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR K+    G   +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRSKIDKGQGKPLLETVRGAGYMI 221


>gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1]
 gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1]
          Length = 251

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  +       +S       E      +    D+  ++          LE
Sbjct: 24  LVVDDDPHIRELLVFALEKARLSARVAEDGEAALAAVAEQAPDLVILDIN--MPRLDGLE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   +P++ +S        +   + G DD V KP   RE+ ARV AI RR++  
Sbjct: 82  VCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVRGR 141

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 G +R        +           PL   E +IL  LM    +  ++  I   +
Sbjct: 142 AEPRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRDAIIDRL 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G    A+ +  ++SHI  LR K     G D V+++  +GY +
Sbjct: 202 HG-PGFAITDRTIDSHIRNLRAKFARAGGHDVVETRAGVGYRL 243


>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CDC1551A]
          Length = 234

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 6   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 64  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 184 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223


>gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++IDD   + +         G  +         +        D+  ++  L    G  + 
Sbjct: 5   LVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDGLTIC 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R     +++P++ ++    ++  +  F++G DD + KP    E+L RV A+ RR   
Sbjct: 65  QRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLRRTDR 124

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A    I          +  +     +   L   E  +L  L+   G+ V+ ++I  
Sbjct: 125 MPQAARHAEILSLGPLTLIPERFECIWFNKPIKLTHLEFELLHCLLQRHGQTVSPSEILR 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G +D   +   +  HI  LR KL  +      + +    GY ++ 
Sbjct: 185 EVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPQFIKTVYGAGYCLEV 231


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V         + G  +      +    + +     +  ++  L   G   +
Sbjct: 3   LLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVML--PGMNGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S +  +   DSG DD + KP    E+LAR+ ++ RR  
Sbjct: 61  AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120

Query: 121 VSNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +   A     +               + +     G+   L   E R+LEY+M N  + +
Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +I   ++G+ D  +   VV+ +++ LRKK+  K     + +   +GY +
Sbjct: 181 SRMEILENVWGV-DFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYML 231


>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 230

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR+ S VP+I ++        +     G DD + KP H  E+         R   
Sbjct: 62  ETCNRIRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGEL-LARIEAVLRRSN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +     I          V  +   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHEQLRYKGILWDEAKHFISVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           D   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 DTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYR 219


>gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621]
          Length = 214

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214


>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
 gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIG-KGEKV 60
           ++++D   +++         G  +E   + E    L       D+  ++  L G  G ++
Sbjct: 6   LILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGASGVEL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            +  +  + +  VP+I ++        +   ++G DD V KP   RE    +  V     
Sbjct: 66  TKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRRSG 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    + +   G I++ + G   ++ GE   L   E +IL + M++  +  ++ Q+  ++
Sbjct: 126 KGNNPSEQISHGDIQLDTAGHRVQINGEEVHLGPTEYKILHFFMSHPERVYSRGQLLDSV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     VEE  V+ HI +LRK L++    + V + R  GY  
Sbjct: 186 WGQ-QVVVEERTVDVHIRRLRKALQDYNVENYVQTVRGSGYRF 227


>gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A + +    +   +        S    + L      D+  ++  L   G    
Sbjct: 5   ILIAEDDADINNLLAKILRTEHFKPIQAFSGTEAKLLFMHNTPDLILLDLML--PGLSGE 62

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL   +R +  S VP+I +S   +L   +     G DD + KP    E++AR+ A  RR 
Sbjct: 63  ELLSELRENLSSDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRRT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S   +      ++ D R   V G    L   E  +L   + N  K  ++  ++  ++ 
Sbjct: 123 ATSKKLSCLNL-ELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVW- 180

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                 E N V  H+S LRKK+       + + +   +G+ +
Sbjct: 181 HGGYYGENNTVNVHVSNLRKKIKEADPENEYIRTVYGIGFKL 222


>gi|323498483|ref|ZP_08103476.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323316372|gb|EGA69390.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 224

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D +  ++         G +++          +  S   D+  ++  L    G K+
Sbjct: 3   LLIIEDDSTTREFIAKGLQQHGYTVDQAEDGNSGLMMALSGEYDLVILDRMLPYLDGMKI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   +      Q+P++ +S   S++  +D   +G DD + KP    E++ARV  I  R +
Sbjct: 63  LSAIKATIE--QLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIINRTQ 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +                       L  +E +++++ + +  + V++ ++F +I
Sbjct: 121 RQGRPQTSLSYDCLTVDLRAHKVTCHDIELQLQPKEFQLIQHFVEHHEQVVSRMRLFESI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H++ LR+KL      + + + R  GY +
Sbjct: 181 WS-YHFDPKTNVIDVHVANLRRKLEEAGCQNLLHTVRGAGYVL 222


>gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +  G  G  +    +           R D+  ++  L        
Sbjct: 13  ILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVML--PDLDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           E+ R +R    + P++ ++    +   +    +G DD V KP    E             
Sbjct: 71  EITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               Y   +        G + +     +    G+  PL   E ++L  LM N G+ ++K+
Sbjct: 131 HDVPYGAGEDETEVLRYGDLELDERAHEVHRAGQYIPLSPTEFKLLTLLMENAGRVLSKS 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I   ++G FD + +  +VE+++  LR+K+ + L    + ++R +GY +
Sbjct: 191 RILDRVWG-FDFSGDGRIVETYVRYLRRKI-DHLDPPLIHTERGVGYCL 237


>gi|168180067|ref|ZP_02614731.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226948673|ref|YP_002803764.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668999|gb|EDT80975.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226843534|gb|ACO86200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 233

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         +         + ++  ++  L        
Sbjct: 5   IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS   S    +   +SG DD + KP ++  +LA++ +  RR+  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174
                      +  +G     +        +E  +       L+ +M    +   + ++ 
Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFTGKETMLSKKEGDLLDAMMKIYPRVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+      V+EN +  +I++LRKKL +    D +++ R  GY ++
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLN 228


>gi|149919419|ref|ZP_01907900.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149819725|gb|EDM79150.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 223

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD A + +      G +GV LE          + ++   DV  ++      G   LE
Sbjct: 6   LLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGM--MPGMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR+   
Sbjct: 64  VLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMHPE 123

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R       +      R+  V+GE   L   E  +L  L+   G+ V +  +     G 
Sbjct: 124 VGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAALLHEA-GR 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  V+ HISKLRKKL        + + R +GY  
Sbjct: 183 DDTVVSERTVDVHISKLRKKLGGDK----IKTVRGVGYVF 218


>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 275

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 54  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 111

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 112 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 170

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 171 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 229

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 230 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 269


>gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5]
 gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5]
          Length = 238

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  +               D++ ++           
Sbjct: 12  ILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREEPDLALMDVM--MPEIDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR     P+I ++        +     G DD + KP    E++ARV A  RR K 
Sbjct: 70  TLCRQIRERYHFPVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQLRRYKR 129

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  +E            +        +  E   L   E  IL  L  NRG+ V+   +F
Sbjct: 130 YNQASERDDSVILVSGLMLNVKTHKCTLNEEALSLTPTEFDILRILCENRGEVVSAESLF 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             I+         N V  HI  LR+K+++       + +    GY I+
Sbjct: 190 RQIWADEYYVKNNNTVTVHIRHLREKMKDSFENPRYIKTVWGCGYKIE 237


>gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 256

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D + +++         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     + +P++ ++   S +  +  F+SG DD + KP    E+L R+ A+ RR  
Sbjct: 65  CQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRSD 124

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   A+   I  +       +  +     E   L   E  +L  L+   G+ VA + I 
Sbjct: 125 RAPLSAKHNEILSYGALTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +    +      +    R D   ++  L       L 
Sbjct: 23  LVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIML--PDMDGLT 80

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           L  R+     +VP++ ++   +++  +    +G DD V KP    E++AR    +     
Sbjct: 81  LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +    G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 141 AAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 201 WS-YDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 241


>gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7]
 gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 240

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + +    +  +   D+S I   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDGM 64

Query: 62  ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E+ + +R       ++VP++ ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  EVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124

Query: 117 RRLKVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N           G + V+ D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 242

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +      G +           +  ++   D++ ++  L   G    
Sbjct: 3   ILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIML--PGLDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            L   +RA     P+I +S   S+   +    +G DD + KP    E++AR+ A      
Sbjct: 61  TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +    R          +   E  +LEYL  N G+ V+KT I   ++
Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   + N+VE+ + +LR+KL        + + R  GY ++
Sbjct: 181 -EYNFDPQTNIVETRMCRLREKLDKPFKEKLLHTVRGFGYVLE 222


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE +I  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYIHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|15595660|ref|NP_249154.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAO1]
 gi|254243559|ref|ZP_04936881.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192]
 gi|9946324|gb|AAG03852.1|AE004484_4 two-component response regulator CreB [Pseudomonas aeruginosa PAO1]
 gi|126196937|gb|EAZ61000.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192]
          Length = 229

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            G+  EA  E  ++SHI  LR KLR      + + + R LGY
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      N+         S   D   ++  L       L
Sbjct: 4   ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R     P+I ++   S+   +   D G DD + KP              R +  
Sbjct: 62  EIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A   +L               ++       G+   L +RE  +L  L+ N+   V +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYM 229


>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V+D        +G ++           L  +   D   ++          L
Sbjct: 3   LVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDV--TMPVLGGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R++RA     P++ ++    +   +   D+G DD + KP          R +L R  
Sbjct: 61  EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+         L R E  +LE  + +    + +T +
Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F  ++G +D     N ++ ++S LR+KL        + + R +GY +
Sbjct: 181 FENVWG-YDFGTASNGLDVYVSYLRRKLEADGEPRLLHTVRGVGYVL 226


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E             +   DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLML--PELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R   + P+I ++   S+   +   D G DD + KP          R +L R+A  
Sbjct: 63  VARRLRESKKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
 gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
          Length = 231

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++          L +    DV  ++  L       ++
Sbjct: 5   LVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGL--PDMDGVD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117
           + R +R+ S+VP++ +S   S    +   D+G DD V KP    E       A       
Sbjct: 63  VLRGLRSWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEPA 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +     V    +    QG    L   E  +LE L+ N G+ V++ Q+   +
Sbjct: 123 APDEEAEVVDAADFTVDLAAKRVHRQGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 WGPS-YGTESNYLRVYMAQLRRKLETDPAHPRHFITEPGMGYRFE 226


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++   LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++R    
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN   + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  ++   + +  E +      D+  ++  L        
Sbjct: 3   LLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPL--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + IR H++   I + +    ++  +   D G +D + KP H  E+ AR+ + + R+ 
Sbjct: 61  SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     GPI+  ++ R  ++  E F L ++E  ILEYL+ N+ + V++ +I   ++G
Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                   N V  H+S LR+KL++K G + + +    GY ID 
Sbjct: 181 DS-VDFLSNTVRVHMSTLRRKLKDKAGCNIIKNVIGEGYIIDE 222


>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
 gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G +++     E   +L S+   D   ++  L       L 
Sbjct: 4   LIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGL--PEIDGLT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R  +     P++ ++   S    +   D+G DD V KP    E++AR+ A I R   
Sbjct: 62  VLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRASG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G +R+ +        GE   L  +E ++L YL+ ++GK V++T++   IY  
Sbjct: 122 NASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYSLD 217


>gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 224

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL++        + G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVIEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLHEHAPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R+H    P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  T  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + V+  + +LRKKL+ +   D + + R  GY  D
Sbjct: 180 PDAELRESHTVDVLMGRLRKKLQAEHPVDVITTVRGQGYRFD 221


>gi|319746072|gb|EFV98349.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 234

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +    DD   ++D  +     DG ++  F + +       + + D+  ++      G   
Sbjct: 10  IIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIM--MPGTNG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR +  +P+I ++   S    +  F+ G DD   KP    ++   V A+++RL 
Sbjct: 68  LDVMKSIRQYDNIPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLD 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + +T    +       +       E  PL + E   L  L+       ++  + + 
Sbjct: 128 EKAIKNDTQYQFLDLILDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNR 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  D  +E   V+  I +LRKKL+       + +    G+ +
Sbjct: 188 IWGFDD--IESRAVDDTIKRLRKKLKQYHSQVSIKTVWGYGFKL 229


>gi|317126118|ref|YP_004100230.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590206|gb|ADU49503.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 224

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S+    +    +W       DV  ++  L   G    +
Sbjct: 4   LVVEDERPLAAALRRSLESEGFSVVVALNGVDGDWQAQEQTFDVIVLDVML--PGMSGYD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D  D G DD ++KP     + AR+ A+ RR   
Sbjct: 62  ICRNVRARDDSTPIVFLTAKDGEYDEADALDIGGDDFISKPFSPVVLAARLRALLRRAGE 121

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +           +       +   L  RE  ++ YL       V+KT+I   ++  
Sbjct: 122 GPEPSVVVGSLRLEPAKQRAWLGADELRLTAREMALVRYLAHRVDHVVSKTEILEHVWDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE +I +LR+KL  +     +++ R LGY +
Sbjct: 182 A-FEGDANVVEVYIGRLRRKLATQPD-VAIETVRGLGYRL 219


>gi|161507256|ref|YP_001577210.1| response regulator [Lactobacillus helveticus DPC 4571]
 gi|160348245|gb|ABX26919.1| Response regulator [Lactobacillus helveticus DPC 4571]
          Length = 240

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++ + +RA S   P+I ++   S    +     G D+ V KP             H R +
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +                                    V  L  +E  +L  +     +  
Sbjct: 125 MEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 SRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++    +   ++   L+   + +    L  +   D+  +   L+       
Sbjct: 4   ILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLFKNNNFDLIIL--DLMLPKISGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ + IR  S +P+I ++   S +  +  F+ G DD + KP   R     + A +     
Sbjct: 61  EVCQNIRQISDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLRRSQN 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +      G  ++F +            L   E +IL  L+ N  + +++ Q+   +
Sbjct: 121 VKKANVIALNKGEYKIFPEKMIVTKDDLDCELTTTEFKILMALINNANQVLSREQLADIV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            GL + +  +  +++HI  +RKK++ +     + +    GY  
Sbjct: 181 MGL-EFSGFDRTIDAHIKNIRKKMKLEKD-QYIITVYGAGYKF 221


>gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
 gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
          Length = 231

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++    +   +   +      +    L +S   D+  ++  L       +E
Sbjct: 8   LLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGL--PDMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I +S     +  ++  D G DD + KP    E+LAR+    R  +V+
Sbjct: 66  VLKTIRGWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAMRHQQVT 125

Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  E          +  D R   +          E +ILE L    GK V   QI   I
Sbjct: 126 VDVPERTIFSVGDLTIDFDKRLVTLNNNPVHFTPIEYKILEILTQYPGKVVTYDQIIKDI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G +    E   +  +++ +R+K+  N      + ++  +GY  
Sbjct: 186 WGPYTN--ENQTLRVNMANIRRKIEKNPAEPKYILTEVGVGYRF 227


>gi|229488630|ref|ZP_04382496.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229324134|gb|EEN89889.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 225

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D A++++        +G  +   +       +   A+ D++ ++  L       
Sbjct: 5   LILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDMAVDAKPDIAVLDVML--PDLNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
           + L R IR    VP+I +S        +   ++G DD V KP         I + +  + 
Sbjct: 63  ISLCRRIREELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVE 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + +  +       G    L   E ++L  +++   K  +++++ S 
Sbjct: 123 SHSGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLVMVSVPRKVWSRSELLSD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   +  +V+ H+ +LR K+    G + + + R  GY++D
Sbjct: 183 VWD-YDWGGDTRIVDVHVQRLRTKI----GSEQIRTVRGFGYTMD 222


>gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 214

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 225

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +  +  F + G ++E  +       L +S   D+  ++  L       L
Sbjct: 3   ILLVEDDTTTIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 E     +  +   R   + G    L  +E ++L+YLM +  + V++T +F A++
Sbjct: 121 SQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D A + +  I  F  +   +      E    L      D+  ++  +    G +V 
Sbjct: 7   LLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESLSGIEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++ 
Sbjct: 67  RRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + + + G      G+V PL   E R+L++ + + G   ++ ++  +++G
Sbjct: 127 ALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             D  +E   V+ HI +LRK +       D + + R  GY++D
Sbjct: 187 Q-DSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYALD 228


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++IDD   + +         G  +           L    + D+  ++  L    G  +
Sbjct: 3   ILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGIDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R       +P+I ++        +   + G DD + KP   +E++AR+  + RR +
Sbjct: 63  LKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRRYR 122

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +S+              +D     V G    L R+E  +L+ LM NRGK + +  +   +
Sbjct: 123 ISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++   E   V+ HI  LRKKL  ++   + +D+ R LGY +
Sbjct: 183 WG-YEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKM 225


>gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 228

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         + G  +   ++      L +S   +   ++  L G G   L
Sbjct: 6   LLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPG-GIDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R      P++ +S    +   +    SG DD + KP    E+           R
Sbjct: 65  SIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRSR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +          G+   L  RE  +LEYLM +  K V +T +   ++
Sbjct: 125 ELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NVV+ HISKLR+KL        + + R  GY +
Sbjct: 185 D-YDFDPQTNVVDVHISKLRQKLDIDSLPPMLKTIRNAGYML 225


>gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99]
 gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99]
          Length = 241

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R     +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 KDVPGAPTQQEEEVTFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +         + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPATPRYIQTVWGLGYVF 233


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G              +      D+  ++          L
Sbjct: 6   ILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVM--MPRLNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S++P+I +S        +     G DD + KP +  E++ARV A  RR + 
Sbjct: 64  SALMKLREKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +                        R   V+GE   L   E +ILE LMA+ G+     
Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           QI+  ++    +   EN V  HI  +R+K+  +      V     +GY ++ 
Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKMEK 235


>gi|27382572|ref|NP_774101.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355744|dbj|BAC52726.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 243

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 14/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S             D+  ++      GE   
Sbjct: 23  LLLVDDDRRIRDLLSRFLAGEGYRVSTAASASDARSKLMGLHFDLLILDVM--MPGETGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     +  ++    G DD V KP   RE+  R+  I +R   
Sbjct: 81  DLARFIRTSSSVPIVMLTARHEAEARIEGLQIGADDYVAKPFEPRELALRINNILKRAAP 140

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               A       GP     D  +     EV  L  RER +L  L    G+ V ++ +   
Sbjct: 141 PPQAAMVEKIAFGPYVYHLDRGELRQGEEVIHLTDREREMLRILSETPGETVPRSAL--- 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                + +V E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 198 ---TGNGSVNERAVDVQINRLRRKIETDPANPLFLQAVRGIGYRL 239


>gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437]
          Length = 245

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 85/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++   +           +   +      ++       +   E
Sbjct: 24  LVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIM--MPEQNGFE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
           L R IRA S VP++ +S        +     G DD + K     EI+ARV         +
Sbjct: 82  LCRRIRAKSNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASQ 141

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     + G I++    R+  V+ +   L  +E  +L     +     +  Q+ +  +
Sbjct: 142 QQMEERILDYGRIKINLSTREVLVEEKKVVLTPKEYELLRLFAEHPRHVFSYEQLLAKFW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              D   +++ +  H+S+LR+K+  +      + +   +GY  +
Sbjct: 202 ---DGVGDKHTIRVHLSRLREKIESDPNHPQYLVNVWGVGYRFE 242


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      ++  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR +    P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +   + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-----NKLGF-----DPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      +  G        +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMI 238


>gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 250

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L    G  V
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLPKMPGLDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 66  LRRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223


>gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 226

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +  +    +    ++     +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRML--PGMDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + + +RA     P++ +S    +   ++    G DD + KP    E    +  +    R+
Sbjct: 62  IIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNRQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + +    R  +  G+   +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 AAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTVRGAGYML 222


>gi|322373203|ref|ZP_08047739.1| DNA-binding response regulator [Streptococcus sp. C150]
 gi|321278245|gb|EFX55314.1| DNA-binding response regulator [Streptococcus sp. C150]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKEEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++
Sbjct: 122 FGKDQSLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERAGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      D +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGY 220


>gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V          +  +++          L  +   D+  ++  L        
Sbjct: 3   ILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMML--PRMDGG 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           E+ + IR  +   P++ ++   S++  +  F++G DD + KP    E ++   A + R  
Sbjct: 61  EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + +    +  +  G+   L  +E  +LEYLM N  + +++  I   ++ 
Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ ++  LR K+ +      + + R  GY I
Sbjct: 181 QS-FDGITNIVDVYVRHLRAKVDDGHIIKLIRTVRGSGYMI 220


>gi|299144284|ref|ZP_07037364.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518769|gb|EFI42508.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 217

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G  A   + G                ++   D++ +   +       L
Sbjct: 3   ILVVEDDQMIREGISAYLSEFGYITIEAKDGREALSKFNN---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P++ ++ +   +  +D F +  D  + KP     + ARV ++ ++   
Sbjct: 60  EVLREIRKKSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNFG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   I V       ++ GE   +  +E  IL+YL+ N G+ + + QI   ++   
Sbjct: 120 LIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL    G D + + R +GY ++
Sbjct: 180 EEIPYDRVIDVYIKELRKKL----GLDCITTIRNVGYKLE 215


>gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 255

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L       L
Sbjct: 23  ILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRML--PKRDGL 80

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 81  SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 201 D-YHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYML 241


>gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti]
 gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti]
          Length = 246

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++      F ++G  +      +           DV  ++  L   GE  L
Sbjct: 11  ILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPVDVILLDLML--PGEDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
            L R IRA S VP+I ++    +   +   + G DD + KP H R               
Sbjct: 69  TLARDIRARSDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRRRQP 128

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +     + +      G        +         PL   E  +L  L+ +  + + + 
Sbjct: 129 RRSPEVGDQQTEIYCFEGLRLDVGSRQLLSDDEREVPLTTGEFDMLCVLVKHAARVLQRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +     G   EA +   +++ I++LR+K+  +      + S R +GY  
Sbjct: 189 FLMDLTRGRNLEAFD-RSIDAQIARLRRKIERDHTRPALIKSVRGVGYVF 237


>gi|260772762|ref|ZP_05881678.1| two component response regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611901|gb|EEX37104.1| two component response regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++          L  +   D+  ++  L   G    
Sbjct: 3   ILIVEDEKKTGDYLQQGLSEAGFVVDLVRDGIDGLHLALTGEYDLLILDVML--PGLDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR K
Sbjct: 61  GVLKTIRRAEYHMPVLFLTARDAVEDRVHGLELGADDYLIKPFAFSELLARVRTLSRRGK 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                             R     G+   L  +E  +LE L+  RG+ ++++ I S ++ 
Sbjct: 121 TQKIDHLQAADLALDLVKRRVIRNGQRIDLTAKEFILLELLLRRRGEVLSRSFIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + +   + NV+E  + +LR K+ +      + + R +GY ++ +
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDPFEPKLIRTVRGMGYVLEVD 223


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A        +    + E           ++  ++  +   G   L
Sbjct: 6   ILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLD--MNMPGMGGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E  R IR+ + +P+I +S   + +  +   D+G DD V KP         I A +     
Sbjct: 64  ETCRAIRSGTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRRSPS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      + +  D R     G+   L  +E  +L YL+A+ G+ V   ++  A+
Sbjct: 124 GPDGGPHGFTASNLEIDFDARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G  D   E   +   I++LRKK+  N      + ++ ++GY  
Sbjct: 184 WG-PDYGDEPEYLRVFINQLRKKIEANPSKPKFILTEPWVGYRF 226


>gi|317122445|ref|YP_004102448.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592425|gb|ADU51721.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 258

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD A ++          G ++              +       V+A+   L+  G  
Sbjct: 28  LVVDDEADIRRLLRLYLKRAGFAVVEAGDGVSALAAFDALVRQGRAVAAVVLDLMLPGLD 87

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+   +R  SQVP++ ++    +   L  F  G DD V KP   RE++AR+ A+ RR 
Sbjct: 88  GWEVCERLRERSQVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSRRA 147

Query: 120 KVSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +               G + +    R   V G    L R E  +L  L  +RG+ +++
Sbjct: 148 APAPGGVRPAGAEPALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTLSR 207

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            QI   + G  D   +E V++SHI  LR+KL        + +   +GY  +
Sbjct: 208 QQILDRLRG-GDYFGDERVIDSHIRNLREKLEPFGLRKLIATVWGVGYRFE 257


>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 238

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++D         G  +   ++      L       +  ++          L
Sbjct: 8   ILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVM--MPRMDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++   S +  +   D G DD + KP    E+LARV A  RR   
Sbjct: 66  EVCQRVRQSSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTNW 125

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    G + V   G    ++GE   L   E  +L+ L+ N GK +    +
Sbjct: 126 EETGSLPAVSNAKHFGELEVDLAGHVVRLRGEEIRLSPTEFALLKQLVTNAGKVLTHRML 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +I+G  +   E   +  +I++LR KL  +      + ++  +GY  
Sbjct: 186 LQSIWG-PEYGDEAEYLRVYINRLRHKLETDSANPRYLLTEPGVGYRF 232


>gi|284042188|ref|YP_003392528.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946409|gb|ADB49153.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      +  D G       + E      ++   D + ++  L       +E
Sbjct: 6   LVVDDELQILRALKVILRDAGYEPVAVATAEEALDAAATRPPDAAIVDLVL--PDGDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S++P++ +S     +  +   ++G DD V KP   RE++AR+AA  RR   +
Sbjct: 64  VCKQLRAWSEMPILVLSAIGEEEQKVRALEAGADDYVTKPFGARELVARLAAALRRAGRT 123

Query: 123 NNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +          +    R    +GE   L   E  +L  L  NRG+ +    + + ++G 
Sbjct: 124 ADEPTIAVDGLELDLARRVVRREGEEVHLTPIEYDLLRVLARNRGRLMTHRALLTEVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +   + +HI+ LR K+        + +   +GY  
Sbjct: 183 PAYGEDIRTLRTHIANLRHKIEPAGRPRFIRTDPGVGYRF 222


>gi|256370488|ref|YP_003107999.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM
           4915]
 gi|256000651|gb|ACU49050.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM
           4915]
          Length = 239

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R            +A 
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDEQIY-VDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         + G +++   +         S   D+  ++      G    
Sbjct: 3   LLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVM--MPGLDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ R++RA   +VP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAVRRLRAKIDDDFAPKLIHTVRGMGYLMDV 223


>gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
 gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
          Length = 239

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +              +    +  ++  L   GE  +
Sbjct: 7   ILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLML--PGESGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  SQVP+I ++        +   + G DD V KP + RE++AR+ A+ RR+  
Sbjct: 65  DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 124

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         R++               +  G   PL   E  +L  L+    + + +  
Sbjct: 125 NETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRDM 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 185 LLDLLRGRQAGPFD-RAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVL 232


>gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 3   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R +R     +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 223


>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
 gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
 gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
           CMCP6]
 gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
          Length = 239

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVF 232


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R  RA     P+I  S   S    +   + G DD + KP          + +L RV 
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ R  ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDIAGLSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|325293564|ref|YP_004279428.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325061417|gb|ADY65108.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 237

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++      GD G  +                R D+  ++      GE  L
Sbjct: 18  LLIVDDDARIRNLLQRFLGDKGYRISVAADAAEARRKMVGIRFDLLILDVM--MPGENGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R +  +  VP+I ++      + +   ++G DD + KP   R     I   +     
Sbjct: 76  SLTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRRNTS 135

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++     E   L  RE+ I+       G  + + ++  A 
Sbjct: 136 PDTPKIEQIMFGPYSFSIPRKELRRGAETIRLTDREQEIMLLFALRAGDTIPRHELVEA- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               +  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 195 ----ESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRL 234


>gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8]
 gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8]
          Length = 233

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G ++      +         R D +     L+  G   L+
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFR--RHDPAITILDLMLPGRDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R +RA S  P++ ++        +   +SG DD V KP+  R     +  +   + +L
Sbjct: 63  VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQL 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R E GP+ +    R     G    L   E  +L  L +  G+ + +  + +A+ G
Sbjct: 123 DEPPERLEFGPLVIDRRTRAVVHAGSEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +    +  V+  +SKLR+KL +       + +    GY  
Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLF 223


>gi|322435322|ref|YP_004217534.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321163049|gb|ADW68754.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 239

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D A +           G ++  + +++            +  ++  +   G   L
Sbjct: 10  IFVLEDDADISRLVQYHLESAGFTVRPYAAIQQIVSDAERQPPSLFLLDIMV--PGGDGL 67

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           +L R +R +   S VP+I ++   +    +   + G DD + KP   RE++ARV A    
Sbjct: 68  DLCRRLRLNPTLSVVPIIFLTARAAENDRVQGLELGADDYITKPFATRELVARVKAVLRR 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  +   I + +      V+GE+      E R+L+YL  + G+  ++  +  A
Sbjct: 128 FERPTTPSILKFEQIEIDAGAMQLRVKGELVTTTATEFRLLDYLARHPGRVFSRDHLLDA 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G     V    V+ ++ ++R+K+         + + R  GY  +
Sbjct: 188 VWG-DARFVTPRSVDVYVRRIREKIEEDAETPRYLKTMRGAGYRFE 232


>gi|317131537|ref|YP_004090851.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469516|gb|ADU26120.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 247

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++         +G              L +     +  ++      G    E
Sbjct: 25  MIVEDNAEIRGIVTKYLDAEGYIPLFAKDGFEALALFAQRLVHLVLLDVM--MPGIDGFE 82

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120
           + R +R  S VP+I ++        L+ FD G DD V KP   +E++ RV          
Sbjct: 83  VLRELRKISDVPVILLTARQEETDRLNGFDCGADDYVVKPFSLKELMKRVNALIRRVYHD 142

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + +             +   E  +L+ +  + G+ +++ Q+    +G 
Sbjct: 143 ADGIVYRYRDLSLHTRAMKLYKGDAEISITAAEYALLDAMFRHPGQVLSREQLIELAFGS 202

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                 +  ++S+I ++R+K+ +       + +K   GY  
Sbjct: 203 R-YEGYDRNIDSYIKRIRQKIEDDPKNPQILITKYGAGYRF 242


>gi|254713505|ref|ZP_05175316.1| Transcriptional regulatory protein chvI [Brucella ceti M644/93/1]
 gi|254716139|ref|ZP_05177950.1| Transcriptional regulatory protein chvI [Brucella ceti M13/05/1]
 gi|261217910|ref|ZP_05932191.1| regulatory protein BvrR [Brucella ceti M13/05/1]
 gi|261321240|ref|ZP_05960437.1| regulatory protein BvrR [Brucella ceti M644/93/1]
 gi|260922999|gb|EEX89567.1| regulatory protein BvrR [Brucella ceti M13/05/1]
 gi|261293930|gb|EEX97426.1| regulatory protein BvrR [Brucella ceti M644/93/1]
          Length = 239

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R            +A 
Sbjct: 68  ELLRHLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +  +    +    ++     +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRML--PGMDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + + +RA     P++ +S    +   ++    G DD + KP    E    +  +    R+
Sbjct: 62  IIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNRQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R  +  G    +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 SAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFETPLLQTIRGAGYML 222


>gi|146308170|ref|YP_001188635.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576371|gb|ABP85903.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 249

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAQLTREYLEGNGLRVAIEADGARAAARILAEQPDLVMLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R +RA  + P++ ++        +   + G DD V KP+  R +LAR+ A+      
Sbjct: 66  SICRKVRAGYKGPILMLTARTDDMDQVLGLEMGADDYVCKPVRPRVLLARIRALLRRREG 125

Query: 117 ---RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               R +    R + GP+ + S  R+  +  +   L   E  +L  L  N G+ +++ +I
Sbjct: 126 SEAERDEGQPRRLQFGPLAIDSAMREAWLGEQGIELTSAEFDLLWLLAVNAGRILSREEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F+++ G+ +   ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 FNSLRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLF 232


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      + S  + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 238


>gi|108757150|ref|YP_630995.1| DNA-binding response regulator PhoP2 [Myxococcus xanthus DK 1622]
 gi|9081855|gb|AAF82621.1|AF157830_2 PhoP2 response regulator [Myxococcus xanthus]
 gi|108461030|gb|ABF86215.1| DNA-binding response regulator PhoP2 [Myxococcus xanthus DK 1622]
          Length = 238

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++ G      D+G  +    S    E L      D+  ++  L   GE   
Sbjct: 14  ILIVEDDAHLRVGLRDNLLDEGYLVAEAPSTRDAERLLQERAFDLLILDVML--PGEDGY 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R   ++  ++ ++        L  F+ G  D + KP   RE+LARV A+ RR  
Sbjct: 72  SFCRRLRTQGNKSMVLMLTARSLEDDILRGFEVGAQDYLTKPYRLRELLARVRALVRRSG 131

Query: 121 VSNNRAETGPIRVFS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +                 +     G V  L R E  +L +L+ ++ + + + +I  A++
Sbjct: 132 TAPPEQMGFSSFTLDLGRRQVSRADGSVVELTRTEFDLLAFLLRHQDRALPRGEILDAVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G  D  V+   V++ +S L+KKL         + + R +GY ++ 
Sbjct: 192 GR-DVVVDPRTVDNFVSSLKKKLGWTSTSGFSIHTIRGVGYRMEV 235


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G ++           L      D+  ++  L   G   +E
Sbjct: 5   LIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLML--PGLSGME 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA  + P+I ++   S+   +   DSG DD ++KP    E+LAR+ A++RR++  
Sbjct: 63  VCRRIRAAKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEGK 122

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A             D R      E   L +RE  +L   M N  + + +  +   ++
Sbjct: 123 KEEAHNILSFRELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L   A E NVV+ ++  LR K+        + + R  GY +
Sbjct: 183 ELGSYA-ETNVVDVYVRYLRNKIDKPSEESYIQTVRGTGYVM 223


>gi|294677778|ref|YP_003578393.1| KDP operon transcriptional regulatory protein KdpE [Rhodobacter
           capsulatus SB 1003]
 gi|294476598|gb|ADE85986.1| KDP operon transcriptional regulatory protein KdpE [Rhodobacter
           capsulatus SB 1003]
          Length = 228

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    + +    L +S   +   ++  L        
Sbjct: 4   LLVVDDDDQIQTMLRIALETAGYEIVAATTGQEAIRLAASIAPEAILLDLGL--PDRDGK 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA S VP+I +S        ++  D G DD + KP    E+ AR+ A  R    
Sbjct: 62  EVLKAVRAFSAVPVIVLSARDREAEKVEALDLGADDYLEKPFGISELQARLRAAARHATR 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + V  + R  +  G+   L  +E  +L  L+ N G+ V   QI +A++
Sbjct: 122 AKGETTRLVLGALSVDLEKRLVQKDGQPVRLTPKEFALLSVLVRNPGRVVTHRQILTAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G      +   +   I +LR K+  +      + ++  +GY +
Sbjct: 182 GPAHHD-DTQYLRVFIGQLRAKIEPDPAAPVLIVTEPGVGYRL 223


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V +        +G  +                   +  ++  L       ++
Sbjct: 4   LLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIML--PKFDGMK 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I I+    ++  ++   +G DD + KP   +E+LAR+ A+ RR K  
Sbjct: 62  VLSRIREVKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYKKE 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +     +   +G    L  RE ++L+ L  + G+ +++ ++F+ ++G  
Sbjct: 122 EEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWGSS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 182 -YGENSNVVDVYIKNLRNKLEDRP-PKLIHTVRGMGYML 218


>gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36]
 gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G +++  ++        +    D+  ++  L   G    
Sbjct: 3   ILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVML--PGMNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     +P+I ++    +   +   + G DD ++KP    E+LAR+    R   
Sbjct: 61  DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQLRDKG 120

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   T     F+   R  +  G+   L  +E  +LE+L+  +G+ ++K+QI S ++ 
Sbjct: 121 STHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + N++E  I +LR K+        + + R +GY ++
Sbjct: 181 I-NFDSDTNIIEVAIKRLRNKIDQGFSSPLIHTVRGMGYVLE 221


>gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 233

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +         ++G  +E +           S   +++  +          +
Sbjct: 4   IALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRRGAP 121

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  GP+           +  +       G    L   E  IL  L    G   ++ 
Sbjct: 122 REAAKPGGPVPESSLERGQLVMDQERHTCTWTGHPVTLTVTEFLILHSLAQRPGVVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRF 230


>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L   GE  +
Sbjct: 16  ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLML--PGEDGI 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + + +R  +S +P+I ++   S    +   ++G DD + KP + +E        +    
Sbjct: 74  SICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 134 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 194 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241


>gi|163838960|ref|YP_001623365.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952436|gb|ABY21951.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 248

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +   +       G  +EG F   E     +S    ++  ++  L       
Sbjct: 21  ILIVEDDPNINAAFKLALSQRGPQVEGCFLGAEGVIAARSQNPPELIVLDLML--PDLDG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
             + R IR  S VP+I ++        +   ++G DD V KP+    + A      R   
Sbjct: 79  FSVCRAIRQTSLVPIIMMTARSDDADIVVGLEAGADDYVVKPVDPAILDARILAVLRRNN 138

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +    G +R+              PL   E R+L  L+ + G+  ++ Q+ 
Sbjct: 139 FEGEAADKADVVINGALRIDRSALSVSKNNAPLPLSPTEIRLLLELLQHPGQVRSREQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +++G  +  ++  +V++ I +LR K  +       V + R  GY  D
Sbjct: 199 RSVWGA-EYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRFD 245


>gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC
           27560]
 gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC
           27560]
          Length = 236

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKERLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  ++     +    +  S+  D+  ++  L G      
Sbjct: 6   ILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP-LNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ + IR  S +P+I ++     Q  +  FD+G DD V KP        R       +  
Sbjct: 65  EVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSHP 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     + G + +    +   V+G    L   E ++L +L  N GK +    + + 
Sbjct: 125 SEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLLTR 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  +   E + + ++IS LRKK+ +  G    +  K  +GY +
Sbjct: 185 VWGA-EYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +        +G S++     E           D+  ++           
Sbjct: 3   ILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIM--MPKVNGF 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R       +  ++   S    +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++        V +       + G+   L  +E  +LEYLM ++ + +++ QI   ++ 
Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
            FD   + N+++  I  +RKK+  + G   + +KR LGY I D N
Sbjct: 181 -FDYEGDSNIIDVLIKNIRKKIDVEGGKQIIYTKRGLGYVIKDEN 224


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +             +   D+  ++  L       +
Sbjct: 4   ILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +  FD G DD + KP          R +L R+  
Sbjct: 62  EVARRVRELKNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K      +   + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDSSNKEHQTTVQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 234

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    S E         + D+  ++  L   G    
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVML--PGIGGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
           E+   IR   S+VP++ ++   +    +    +G DD + KP + +E           + 
Sbjct: 66  EVCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R +        G   VF        +     L   E R+L       G+ + +  I  
Sbjct: 126 WYRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +++G +    E   +++ I +LRK             + R +GY    N
Sbjct: 186 SVWG-YSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRN 233


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|60677303|ref|YP_209661.1| DNA-binding response regulator [Clostridium perfringens]
 gi|60417938|dbj|BAD90605.1| DNA-binding response regulator [Clostridium perfringens]
          Length = 217

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G  +             ++   D++ I   +       L
Sbjct: 3   ILIVEDDKIIREGISEYLSEFGYIIIEAKDGREALSKFNN---DINLIILDIQIPYVNGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S++P++ ++ +   +  +D F +  D  V KP     + AR+ ++ ++   
Sbjct: 60  DVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNFG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   I V  +    ++ GE   +  +E  IL+YL+ N G+ + + QI   ++   
Sbjct: 120 QIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEIPYDRVIDVYIKELRKKLKL----DCITTIRNVGYKLE 215


>gi|330965379|gb|EGH65639.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 249

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 23  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 81  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244


>gi|329940057|ref|ZP_08289339.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300883|gb|EGG44779.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++  +       L ++ R DV  ++  L       +E
Sbjct: 5   LVVDDEPGIVRALVINLRARAYEVDAAHDGATALRLAAAHRPDVIVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  ++VP++ +S   +    +   D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGRTRVPILVLSARHASDEKVGALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   +T    V    +  +  G    L   E  +LE L+ + G+ V + Q+   +
Sbjct: 123 GAGEGDVIVQTEGFTVDLAAKKVDRGGRDVRLTPTEWHLLEVLVRSPGRLVGQKQLLKEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +G      E N +  ++++LR+KL  +        ++  +GY  + 
Sbjct: 183 WGPS-YGTETNYLRVYMAQLRRKLEADPAHPRHFITEPGMGYRFEK 227


>gi|300785585|ref|YP_003765876.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795099|gb|ADJ45474.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L DD   +++  +     +G  +                  DV  ++      G   L 
Sbjct: 9   LLADDDRAIRESLVRALDLEGYHVTEVPDGVSALATARRGPFDVLILDVM--MPGVDGLG 66

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 67  VCRVLRAEGDPTPILMLTARVETPDRVAGLDAGADDYLPKPFELDELLARLRALLRRTSP 126

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   T  +         R    QG    L + E  +LE L+ N G  + +T I+  I+
Sbjct: 127 EPDARRTLRLGELAVDPAARRVWWQGTEITLSKTEFDLLELLVRNAGIVLDRTTIYQRIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G ++   +   +  +I  LR+KL      + + + R +GY
Sbjct: 187 G-YEFGADSKNLAVYIGYLRRKLEQAGATELIHTVRGVGY 225


>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 242

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD + KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         ++   D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVM--MPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIM--MPTMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 236


>gi|226357470|ref|YP_002787209.1| response regulator, OmpR [Deinococcus deserti VCD115]
 gi|226319460|gb|ACO47455.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +  + G  +           +      D+  ++  L        
Sbjct: 5   ILVIEDDPDITQVVKFVLEEAGHRVFSAPDGASGLCVAHEQNPDLILLDLGL--PDIDGA 62

Query: 62  ELPRIIRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +   S V ++      D        D FDSGV+  + KP H +E+      +  R
Sbjct: 63  QVARRLTLTSHVRIMGLRAPDDVDHKINLFDLFDSGVEAYMTKPFHPQEL-LARVNVQLR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +    R     G+   L   E  +L  L+   G+   + +I   ++
Sbjct: 122 RSSGCDVTSVGALDISLQDRICLYSGQHLKLTATEFELLSVLVQQPGRVYRRDEIERELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++    + ++ HI+ LR K+R+  G+  + + R +GY+I
Sbjct: 182 NT-EQPRNNSSLDVHIANLRGKIRDLGGYGFIRTVRGIGYAI 222


>gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
          Length = 214

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFKELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214


>gi|218282490|ref|ZP_03488749.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989]
 gi|218216586|gb|EEC90124.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989]
          Length = 214

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 98/221 (44%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      + G S+      +      ++   D+  +   +       L
Sbjct: 4   ILVVEDDTLIREGLSEFLSESGYSIIQAKDGKEALEKFNT---DIHLVILDIQIPYINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++ + + +  +D + +  D  + KP     + AR+      L  
Sbjct: 61  DVLKEIRKESDLPVLILTAFSNEEFKIDAYTNLADGYIEKPFSLPVLKARI----DALLQ 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V       ++ G+   +  +E  IL+YL+ N G  + + QI   ++   
Sbjct: 117 KQDIFAYKNVCVNFKSYTAKIDGKTIDINAKELEILKYLLDNAGIALTRAQILDHVWKDS 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +E   + V++ +I +LRKKL    G D + + R +GY ++ 
Sbjct: 177 EEVPYDRVIDVYIKELRKKL----GLDCITTIRNVGYKLEK 213


>gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 635

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A               +++  N+ E    L      DV  ++  L       +
Sbjct: 3   ILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIML--PQLDRI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++     +  +   ++G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +     +   QG++  L   E  +LE  + +  +  ++  I   I+ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           L     EE  + SHI  LR+KL+      + + +    GY +
Sbjct: 181 LDKVPGEE-TISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221



 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LIDD     +   A     G ++   ++ +    +  +   D+  ++  +    G  +
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            +  R       VP++ +S +   ++       G D  + K 
Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKT 611


>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D     F   G+           E +   A+ D+  ++  L   G+  L
Sbjct: 7   ILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVML--PGKSGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +RA    P+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 65  ELCRDLRAQYSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRRNGA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +  T        G   +               L   E  +L+  + +  + + + Q+
Sbjct: 125 AEPKRATAKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQRVLTRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                G  D + +   ++  +S+LR+K+ +       + + R  GY  
Sbjct: 185 IELSGGDSDYSFD-RSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQF 231


>gi|299068876|emb|CBJ40117.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CMR15]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR  +
Sbjct: 61  QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         + +  R     G    L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEPKLIHTLRGMGYVLD 220


>gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +  +       ++  D+  ++  L   G   +
Sbjct: 5   ILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVML--PGLNGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR      P+I ++   +    +   D G +D + KP    E+LARV    R   
Sbjct: 63  EVLRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHRA 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  + +E   +        V  + RD   + +   L  +E  +L +L+ N+   +++  I
Sbjct: 123 IVQDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRDNI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   E NVV+  I  LRKKL        + + R +GY I
Sbjct: 183 LLTVWG-YDYEGETNVVDVFIGHLRKKLEEDTTSSLIQTIRGVGYVI 228


>gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   ++         +   D+  ++  L       +
Sbjct: 9   ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIML--PEMDGI 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113
            +   IR  +++VP++ +S   S    +     G DD + KP +         +++ +  
Sbjct: 67  AVCENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLIVKNK 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            I  +  VS           F+        G+ + L ++E  +L+ L+ N+G+ V + +I
Sbjct: 127 RIQDKDSVSTVYHFGSNEIDFAAQECIGKDGKHYELSKKETMLLKLLIENKGEVVTREKI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++G ++       +++ I   RK             S R +GY  
Sbjct: 187 LQVVWG-YNVYPTTRTIDNFILNFRKYFEEDSRNSRYFHSVRGVGYKF 233


>gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 242

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|119469680|ref|ZP_01612549.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
 gi|119446927|gb|EAW28198.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
          Length = 241

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +            + ++   S E      +     +  ++  L       L
Sbjct: 6   LLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINL--PQMDGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R I+ H     +I ++   S    +   + G DD + KP   RE+ ARV    R   
Sbjct: 64  SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRA 123

Query: 121 VSNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                  T                 +  D     +  +   L   E  +L Y   +    
Sbjct: 124 QLLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++G +  +  E+ V SHI++LR KL        +++   +GY ++
Sbjct: 184 FSRQQLLDKVWG-YQHSGYEHTVNSHINRLRAKLELHQSTPIIETVWGVGYKLN 236


>gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +          +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
 gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 243

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++D        +G  +      +    L      D+  ++      GE  L 
Sbjct: 12  LVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLM--MPGEDGLS 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           + R +R A+ + P+I ++        +   + G DD + KP + RE              
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPA 129

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GP       R  +  GE   L   E  +L+ L+ +  + +++ +
Sbjct: 130 QEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLSREK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 190 LALLARGR-EFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVF 237


>gi|330888203|gb|EGH20864.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330988448|gb|EGH86551.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 230

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
 gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +       L  +   D + ++  L   G   L
Sbjct: 3   ILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIML--PGLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
            L   +R      P+I +S   S+   +    +G DD + KP    E+LAR+        
Sbjct: 61  TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +    R+ +  GE   LP RE  +LE+L+ N+G+ V+KT I   +Y
Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NVV+  + ++R K+        + + R +GY +
Sbjct: 181 D-YSFDPQTNVVDVLVCRVRNKVDKDFDRKLIHTVRGMGYVL 221


>gi|282899307|ref|ZP_06307276.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195764|gb|EFA70692.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 240

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++             E     +    L       +  ++  L        
Sbjct: 11  IMVVDDDFSVRNLVHRFLSRK-YKTEAAADGKSAMALFEQFNPSLVILDWNL--PDVNGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
           +L + +++ + V ++ ++        +     G DD + KP         + A +  I  
Sbjct: 68  KLCQDMQSRTNVLVLMLTSRNDETDKIKVLAGGADDFMTKPFSLAEVEVRVDALLRRIRY 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L  + G+  ++ Q+   I
Sbjct: 128 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKK+  +    + + + R  GY  +
Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 231


>gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 4   ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 62  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 122 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 182 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 219


>gi|229591553|ref|YP_002873672.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363419|emb|CAY50598.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 227

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      ++         +    +  ++  L   G   +
Sbjct: 7   ILIVEDEPKLAALLQDYLVAAGYPTLCLDNGLQVVPTVRAQPPRLILLDLML--PGRDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 65  QVCQDLRGFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRGPQ 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +        +        + G    L   E R+L     + G+  ++ Q+   +Y   
Sbjct: 125 LLSSTPARL-LIDETQYRASLDGVALDLTPLELRLLSTFARSAGRVFSRDQLLDKLYSDH 183

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              V +  V+SHI  LR+KL     G  P++S   +GY  
Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPGETPIESLYGVGYRF 222


>gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 240

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G +++  +         S    D+  ++  L       ++
Sbjct: 21  LVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGL--PDMDGVD 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120
           + R +R  S +P++ +S        +   D+G DD + KP    E+LAR+          
Sbjct: 79  VLRDLRRWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRRVPAP 138

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     +    V    R  +  G    L   E +ILE L+ N  + + + Q+ + ++G 
Sbjct: 139 EAAPVVASAAFSVDLAARRVDRGGSAVRLTPTEWKILEILVLNPNRLITQQQLLARVWG- 197

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                E N +  ++++LR+KL  +      + ++  +GY  
Sbjct: 198 PGYVKEANYLRVYMAQLRRKLEADAGKPRHLLTEPGIGYRF 238


>gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR
 gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144]
 gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028]
 gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045]
          Length = 219

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  N  +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLML--PNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  +  P+I I+        +   D G DD + KP    E+L        R + 
Sbjct: 62  EICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELL-ARIRAVLRRQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G +
Sbjct: 121 DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|328461774|gb|EGF34010.1| response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +G   +          +     +    I   L    +  +
Sbjct: 3   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++ + +RA S   P+I ++   S    +     G D+ V KP             H R +
Sbjct: 63  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +                                    V  L  +E  +L  +     +  
Sbjct: 123 MEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 SRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233


>gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G S++  +       L      ++  ++  L        
Sbjct: 4   ILIIEDEKKISRYLQLELEHEGYSVDIASDGIMALKLFGENFYNIILLDLML--PKLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR  S VP+I ++      + ++  D G DD + KP    E    +       + 
Sbjct: 62  EVCRRIRKKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRHNKE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       IR+  + +   VQ E   L + E  +L YL+ NR   +++ +I + I+
Sbjct: 122 FSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILNNIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D    E +V+ +I  LRKK+ +      + + R  GY +
Sbjct: 182 G-YDYNGGEKIVDVYIKSLRKKV-DFREKKLIHTVRGFGYML 221


>gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G  ++   +         +    +  ++  L   G    
Sbjct: 3   ILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVML--PGMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++ R +R     P++ ++    ++  +   + G DD + KP  + E+LARV  +  R   
Sbjct: 61  DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E   + +    R     G+   L  +E  +L  L+   G+ +++ QI S ++ +
Sbjct: 121 REVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  + +LR KL        + +   +GY  
Sbjct: 181 -NFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219


>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 240

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L   E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
           15897]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G  +   ++ +    L     + +      ++       
Sbjct: 5   IMVVDDDKDIREVIQVLLSSEGYEVIEASNGKEALELVDDDTDLII---LDVMMPEMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
           +   ++R  ++ P++ ++           F SG DD + KP  + E             V
Sbjct: 62  QACVLLREKTKAPILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRRYHV 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +      +TG I V S  R   + GE   L   E  ILEYL+ N+ + ++ +Q
Sbjct: 122 YQGKGTTQEKQITYKTGNIEVNSAKRTASIDGEKLNLTDLEYNILEYLLMNKQQVISPSQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +F AI+         N +  HI  LR+K+  +    + + +    GY
Sbjct: 182 LFEAIWHEEYYYGANNTIMVHIRHLRQKIEKDPTNPEHIKTIWGKGY 228


>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  ++             S   D+  ++  L        
Sbjct: 4   ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLML--PQLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R   ++P+I +S        +   D G DD + KP    E++AR+ +  +R + 
Sbjct: 62  EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYER 121

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + +         + + +      V G+      +E  +L +  +N     +K +IF 
Sbjct: 122 LTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERIFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  +   +   V  HI K+RKK+  +    + +++    GY  +
Sbjct: 182 LLWGA-EYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFN 227


>gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
          Length = 262

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +              +    +  ++  L   GE  +
Sbjct: 30  ILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLML--PGESGI 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  SQVP+I ++        +   + G DD V KP + RE++AR+ A+ RR+  
Sbjct: 88  DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 147

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         R++               +  G   PL   E  +L  L+    + + +  
Sbjct: 148 NETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRDM 207

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 208 LLDLLRGRQAGPFD-RAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVL 255


>gi|325922587|ref|ZP_08184341.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546937|gb|EGD18037.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 242

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++       +  R D+  ++      GE  L 
Sbjct: 12  LVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKSIAQRRPDLIVLDVM--MPGEDGLS 69

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 70  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 129

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 130 SNEQADHRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 190 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 235


>gi|300868433|ref|ZP_07113054.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333567|emb|CBN58242.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 255

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++    +           G        +   + L +  +  +  I+  L   GE  L 
Sbjct: 37  LLVETDEALAQQVSLDLKSSGYEPVVATDIAGGQHLAAELQPALIVIDRML--PGEAGLT 94

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ +    +++  +   + G DD   KP    E L  V    +    
Sbjct: 95  LCNHLRNTGNRVPVLLLMARDTVEDRVACLECGADDYFLKPYRTEEFLQLVRLYLQPDTT 154

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R     G    L  +E  +L+YLM +  + + + QI   ++G +
Sbjct: 155 EVEELRFGELVLDLSTRRAFRNGRGIDLTMKEYELLKYLMEHSREVLTREQILENVWG-Y 213

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV+E +I  LR K+ ++     + + R +GY +
Sbjct: 214 DFLGESNVIEVYIRYLRLKIEDEGEKRLIQTVRGVGYVL 252


>gi|282866884|ref|ZP_06275918.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558283|gb|EFB63851.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 236

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 24/235 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G ++              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERVGFTVTAVPDGLLGLEAFRADRPDIALLDVMV--PGLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----------------HH 105
           L R IR  S VP+I +S        +   ++G DD V KP                  H 
Sbjct: 65  LCRRIRDESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 106 REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                        +  ++     G + + ++G +    G    L   E R+L    +  G
Sbjct: 125 SGAGGGPEGGTGHVDGTDGVLVFGDVEIDTEGMEVRRGGAHVSLTPTEMRLLLEFSSAPG 184

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 TVLSRDRLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 234


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +G  +      +    L      DV  ++  L       LE
Sbjct: 26  LVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLG--DIDGLE 83

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           + R IR   + VP++ ++   S++  +    +G DD V KP    E++AR    +     
Sbjct: 84  VLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGA 143

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R   G + +  D  + +  G+   L   E  +L YLM N  + ++K+QI   +
Sbjct: 144 SAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +      + + R +GY +
Sbjct: 204 W-QYDFGGQANIVELYISYLRRKI-DAGREPMIHTLRGVGYVL 244


>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G      +        Q SA  D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLVFALQGEGFDTTWLSLGAAALEHQKSAPADLIILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E  + +R  S VP+I ++        +   + G DD V KP   RE+ ARV AI  R   
Sbjct: 62  ETCKNLRRFSDVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRVAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                + T   +V +D      +G+   L R E R+L  L+    +  ++ Q+  A+ G+
Sbjct: 122 RPAAESSTALFQVDADRVQINYRGKPLNLTRHEFRLLNCLLEQPERVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             +A  E  ++SHI  +R KLR  +   +P+ + R LGY
Sbjct: 181 ASDAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGY 219


>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +   +       +      D+  ++           
Sbjct: 4   ILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   
Sbjct: 62  STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + R      +     V   GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 122 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LR  L        + + R +GY  +
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 223


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   NS      +      D   ++      G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVM--MPGMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   S+   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNA 127

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +++  +  +         D  +    GE+  L   E  +L YLM NR   ++K++I   
Sbjct: 128 VDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTPLIHTVRGVGYVL 229


>gi|255305157|ref|ZP_05349329.1| DNA-binding response regulator [Clostridium difficile ATCC 43255]
          Length = 228

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G S++   ++E    +      D+  ++  L        
Sbjct: 4   ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSL--PDGDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++        +   D G DD + KP    E+++R+ A+ RR   
Sbjct: 62  DICKRVREASNVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNF 121

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++           +                L   E ++L  LM N+   + +  I   ++
Sbjct: 122 TSENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
                 V++N +  ++ +LR K+ +       + + R +GY  + 
Sbjct: 182 DGNGSFVDDNTLSVYVRRLRNKIEDNPENPKILLTVRRMGYKWNV 226


>gi|88855731|ref|ZP_01130394.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815055|gb|EAR24914.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 233

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    ++G ++    +      L  +A  D + ++  L   G    
Sbjct: 12  ILVVEDEPEMAALLVRGLQEEGYAVTVAGNGIDAMTLAGAASFDAAVLDVML--PGMSGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R  S  + ++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 70  ELCRRLREKSTGIAIMLLTARDALDDRVRGLDAGADDYLTKPFEFAELAARLRALRRRDL 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +R + G + +          G    L R E  +L  L  N  + + + +I   I+G 
Sbjct: 130 IGASRIDVGGLHIDMTRHAISAGGTPLRLSRTEFELLRLLAENHTRILPRAEIIDTIWGA 189

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++ N+V+ ++  +RKKL +      + + R +G+ +
Sbjct: 190 AAY-IDANIVDQYVRYVRKKLDSVGSPVSIVAVRGVGFQL 228


>gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 227

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G +++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEIKTGTYLRKGLTEAGFTVDWVADGVTGQHRALTEDYDLIILDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + + +R      ++ ++    +   +   + G DD + KP    E+LARV +I  R   
Sbjct: 61  TVLKNLRRTHSTSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    R    QG+   L  +E  +L  LM  +G+ + ++ I S ++ +
Sbjct: 121 RDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPRLIHTVRGMGYVLEE 221


>gi|269794678|ref|YP_003314133.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096863|gb|ACZ21299.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 235

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  L  +        +G                  +  D+  ++  L        
Sbjct: 4   ILIAEDDELQAELARRYLTREGYQATVVGDGRSALEAVRGSAVDLLVLDVML--PEMDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++        L   + G DD ++KP   RE++AR  A+ RR +
Sbjct: 62  AVCRALRAAGDETPILMLTARSEEDDLLVGLELGADDYLSKPYSPREMVARARALLRRSR 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   T     V     +  V G    L R E ++L  L  + G  +++ Q+   ++G
Sbjct: 122 TVDDGPVTVGPLVVDPRRHEASVGGTPIDLTRAEMQLLTLLAEHAGLVLSRPQLLRHLHG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             DE   E  +++H+  LR K+     G + + +   +GY +
Sbjct: 182 -SDEYTTERTIDTHMKNLRSKVDAVFDGPELLRTVYGVGYKL 222


>gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 367

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       D+G  L           L       +  ++  L   G    
Sbjct: 150 ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIML--PGINGY 207

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+      +I ++    +   +   D G DD + KP   +E+LAR+ A  R    
Sbjct: 208 EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 267

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   +      +D             L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 268 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG- 326

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N+VE +I  LR K+ +      + + R +GY 
Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYK 364


>gi|188990198|ref|YP_001902208.1| two-component system response regulator protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731958|emb|CAP50144.1| two-component system response regulator protein [Xanthomonas
           campestris pv. campestris]
          Length = 280

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++       +  R D+  ++      GE  L 
Sbjct: 50  LVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRITQRRPDLIVLDVM--MPGEDGLS 107

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR +V
Sbjct: 108 AARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQV 167

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++++AE         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 168 TSDQAEPRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 227

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 228 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 273


>gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   ++F   G   +   +S E    +      D+  ++      G   
Sbjct: 6   ILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQEPDMMILDVM--MPGMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
               + +R  S++P++ ++     +     F++G DD + KP   +E+L RV AI  R  
Sbjct: 64  FAALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVY 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +       V  +    +  GE   L  +E ++ E L  N+G+ V    +  AI G
Sbjct: 124 PEKERKVFFEAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            F     E+ + +HI  LR+K+         + + + +GY ++
Sbjct: 184 DF-WQGYESTLATHIRHLREKIEENPSKPVALVTIKGIGYRLN 225


>gi|323483855|ref|ZP_08089232.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
 gi|323402809|gb|EGA95130.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++     +    G      ++      +   ++ ++  ++  + G   +  E
Sbjct: 7   LIVDDEPAIRKLLTRVAASCGYESLTASNGHEAIVMSRDSKINLILLDIMMNGND-EGFE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           + R +RA    +P+I +S       TL   D G DD + KP +      ++ A +    +
Sbjct: 66  VIRRLRASGNEIPIIVLSGRTEDFDTLYGLDIGADDYIGKPFNPVVLGAKMKALIRRDMK 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +    GP    S   +        PL  RE  +++  + N G+   K Q++  +
Sbjct: 126 ASRPLPDFITAGPFCYNSMTMELFKDNRPIPLSSRENVLMKLFLCNAGRVFTKEQLYEHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +      V+ N +  +IS LR K+  +      + +   LGY  
Sbjct: 186 WNG--SVVDANTIMVYISHLRNKIEEDPKNPRYLKTVWGLGYKF 227


>gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++      F  +G  +            Q+  + D+  ++          L
Sbjct: 4   ILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVR-QAEKQPDIILLDIN--MPEINGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ R IR++   P++ ++        +  F +G DD + KP    E    +        R
Sbjct: 61  DVCRKIRSYVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHLRREMR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +       +G + +    R          L ++E  I+E L  + G    K +++  ++
Sbjct: 121 NQKKTTVKFSGDLVIDYSERALYCNDIQISLAKKEFDIIELLSKHPGMVFDKERMYERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G  +E  + +V+  HI ++R KL+       +++   +GY 
Sbjct: 181 GT-NEEGDSSVIPEHIRRIRSKLKEHGCGSKIETVWGVGYK 220


>gi|300717134|ref|YP_003741937.1| transcriptional activator [Erwinia billingiae Eb661]
 gi|299062970|emb|CAX60090.1| Transcriptional activator [Erwinia billingiae Eb661]
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D            G+ G +++         +       D   ++  L   G    
Sbjct: 3   ILFVEDEEKTSSYLSRALGESGFTVDVSADGTEGLYYALEFDYDAVILDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   IRA  Q P++ +S   S+   +     G DD + KP    E    +  +      
Sbjct: 61  RVLEGIRASKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPFDVKLLHTVRGMGYVLEV 223


>gi|229087374|ref|ZP_04219514.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695942|gb|EEL48787.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G      ++ +      +  +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYEAIVADNFDDIMDSFNRVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 236

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +  +       +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDGI 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170
           +  +   +  I+     +  ++  +   +            +E  +L  +   + +  ++
Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +    R  ++ ++  L   G    
Sbjct: 8   ILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIML--PGMSGY 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR       +I +S        +   + G DD + KP + +E++ RV ++ RR+ 
Sbjct: 66  EVCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVN 125

Query: 121 VSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S ++A           P  +    +          +   E  IL+Y + N+GK + + +
Sbjct: 126 FSQDKANNKIKESISDGPFTLDLYAKSFYKNEREIDVTPTEFTILQYFIQNKGKAMTRDE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I +  +G  + + +  +V+ +I ++R K+ +     + +++    GY 
Sbjct: 186 IMTKTWGE-NYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYR 232


>gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
 gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  ++     +  ++    +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKELGHQVDAAEDAKEADYFLRESCPDIAMVDLGL--PDEDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R+    +P++ ++   S Q  +   +SG DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSTQINIPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELDGFVIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     D + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 223


>gi|153008164|ref|YP_001369379.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833135|ref|ZP_04681464.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium
           LMG 3301]
 gi|151560052|gb|ABS13550.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825402|gb|EEQ96970.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium
           LMG 3301]
          Length = 239

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R            +A 
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPTGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRF 236


>gi|323692857|ref|ZP_08107083.1| hypothetical protein HMPREF9475_01946 [Clostridium symbiosum
           WAL-14673]
 gi|323503086|gb|EGB18922.1| hypothetical protein HMPREF9475_01946 [Clostridium symbiosum
           WAL-14673]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++     +    G      ++      +   ++ ++  ++  + G   +  E
Sbjct: 7   LIVDDEPAIRKLLTRVAASCGYESLTASNGHEAIVMSRDSKINLILLDIMMNGND-EGFE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           + R +RA    +P+I +S       TL   D G DD + KP +      ++ A +    +
Sbjct: 66  VIRRLRASGNEIPIIVLSGRTEDFDTLYGLDIGADDYIGKPFNPVVLGAKMKALIRRDMK 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +    GP    S   +        PL  RE  +++  + N G+   K Q++  +
Sbjct: 126 ASRPLPDFITAGPFCYNSMTMELFKDKRPIPLSSRENVLMKLFLCNAGRVFTKEQLYEHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +      V+ N +  +IS LR K+  +      + +   LGY  
Sbjct: 186 WNG--SVVDANTIMVYISHLRNKIEEDPKNPRYLKTVWGLGYKF 227


>gi|300813010|ref|ZP_07093393.1| putative DNA-binding response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495980|gb|EFK31119.1| putative DNA-binding response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF+  +       ++R D+  ++  L    G K+
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALENSRPDLVILDLMLPDEDGSKI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   R   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLRSTSATEDLPVIIASAKAAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 E   V+ H+  LR KL        +++ R +GY 
Sbjct: 183 ETGFYGETRTVDVHVRTLRHKLGEAG--KHIETVRGVGYR 220


>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYDDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|167033182|ref|YP_001668413.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859670|gb|ABY98077.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 238

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L++D   A    +G  +   ++ E  E L  S   D+  ++  L   G+  L 
Sbjct: 6   LIVDDDPLIRDLLQAYLSQEGYDVHCADTAEKAEALLGSQDVDLVLLDIRL--PGKDGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S+V +I I+        +   + G DD V KP++ RE+++R   + RR++ +
Sbjct: 64  LTRELRVRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVAKT 171
                                                L   E ++L   + N G  +++ 
Sbjct: 124 REVHPAPACAQSLKQFADWALDTDRRRLIDARGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   I    +    +  ++  + +LR+KL  +      + +    GY  
Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232


>gi|2353768|gb|AAB94871.1| DMSO/TMAO-response regulator [Rhodobacter sphaeroides]
          Length = 232

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  + +         +   +      E    +      DV  ++      G+  L 
Sbjct: 8   LVVEDDPVSRQTLAMYLRKENHEVSEARDGEQMRRVFPKGDVDVVMLDIN--MPGKDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +   S+V +I ++        +   + G DD V KP + REIL R     RR+   
Sbjct: 66  ILRELPRQSEVGIIMVTSRKEDVDRIVALEFGADDYVTKPYNMREILPRAKNFARRVAAL 125

Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  P   F             +  G    L R E  +L   +A+ G+ + + Q+ +
Sbjct: 126 RLVRPDQPATTFDGWTLDAAHWALTDPAGNHVKLTRAEFELLATFVAHPGQVLTRDQLMN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G       +  ++  + ++R+K+  +      + +   +GY  
Sbjct: 186 HV-GRRGHETFDRTIDVLVRRIRRKIEADPSDPRLIVTVHGIGYVF 230


>gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 227

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ +       ++G  ++  +      W  +    DV  ++  L  K     +
Sbjct: 4   LLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLK--NGYD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +R      P++ ++         D FD G DD + KP     ++AR+ A I R   
Sbjct: 62  VLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R       V  L  RE  +L YLM + G+ V+K QI   ++  
Sbjct: 122 ERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +NVVE +I  LR+K+    G   + + R +GY +
Sbjct: 181 PAFEGGDNVVEVYIGYLRRKIDVPFGLQTLATVRGMGYML 220


>gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D             + G  +E     E    +      DV  ++  +    G +V
Sbjct: 3   ILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGVQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           +E  R      Q P++ +S    +   +    +G DD + KP    E++ARV   +  R 
Sbjct: 63  VETLRR--EGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R    QG+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222


>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +           L   +  D+  ++  L   G   LE
Sbjct: 5   LLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGL--PGMDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+         R   
Sbjct: 62  VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAEL-LARVRALLRRGT 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +R+  +     +  +   L  +E  +L  L+   G+ V + Q+   ++   
Sbjct: 121 PDLGNGVHGVRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQLMREVWDTT 180

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +     ++ HIS LRKKL +       + + R +G+  +
Sbjct: 181 WWS-STKTLDMHISWLRKKLGDEASRPRFITTVRGVGFRFE 220


>gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   ++   +      G+     +S      +  S R  D++ ++  L       
Sbjct: 4   ILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIML--PEMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR  S +P+I  S    + + +  F+ G DD + K     E++AR+ A+ +R  
Sbjct: 62  LELCKKIRQISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N     G + V ++     ++G    L   E  IL  L++N+GK  ++  +  AI   
Sbjct: 122 -ANQVIHYGDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAI-SS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                    +++HI  LR KL +       + S   +GY  
Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKF 220


>gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
          Length = 245

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G       +    + +      D+  ++      G+  L
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAVDLVILDIM--MPGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA+S +P++ ++        +   + G DD ++KP + RE+LARV AI RR + 
Sbjct: 65  TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVA 169
                                  +               L   E  +L  L+    + ++
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   +    +    +  ++  IS+LR KL  +      + + R  GY +
Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G+  +  +  E   ++ S    DV  ++  L       L
Sbjct: 7   ILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRML--PRRDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMI 225


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A + +        +G  +   +  E        +  D+  ++  L       L+
Sbjct: 4   LIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIML--PEVNGLD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   + VP++ ++        +   D+G DD + KP   +E+LARV ++ RR   
Sbjct: 62  ICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRSFP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        S   +         L     RE R+L  L+  +G+ +++ QI   ++
Sbjct: 122 YAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDPVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D   +   V+ H+ ++R+KLR       + + R +GY I+
Sbjct: 182 GK-DFDGDPRTVDVHMKRIREKLRTFESDWSLVTVRGVGYRIE 223


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   ++         + R D   ++      G     
Sbjct: 11  LVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVM--MPGMDGFG 68

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L + +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 69  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++  + R +   I +  D R+    G++  L   E  +L Y M N G  ++K +I   
Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 189 VW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 230


>gi|23097812|ref|NP_691278.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776036|dbj|BAC12313.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 256

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +   + ++  +   ++  +D+S     L        
Sbjct: 22  ILIVEDDKTIATGLEYSLKQEGYDVVVCHKVQEAQRKINNDLDDISLCLFDLSLPDGSGY 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL  +++  + +P+I ++        +   D G DD + KP   RE+++R+  + RR + 
Sbjct: 82  ELCEMVKRKADIPVIFLTVVDDEVNVVMGLDMGADDYITKPFRIRELISRIKTVLRRYEK 141

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S    E        G I + +       + E   L   E R+L   + +RG+ +++ Q+ 
Sbjct: 142 SKPNKEQLSSVISIGSINIHTLEGKVYKETEEILLTALEYRLLMIFVNHRGQVLSRKQLL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+ +  + V +N +  +I +LRKK+         +++ R +GY +
Sbjct: 202 QLIWDIAGDFVNDNTLTVYIKRLRKKIEEDAQHPTVIETVRGMGYRM 248


>gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2]
          Length = 228

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 5   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R +R      P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 225


>gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +             +++     E   ++ +S   D+  ++  L   G    
Sbjct: 3   ILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILL--PGLSGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R +R     +P++ ++    ++  +   D G DD + KP    E+ ARV A+  R  
Sbjct: 61  EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLRRGG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS+   +   I + +   + +    + PL  +E  +LE+ M +  + ++++ I   ++ 
Sbjct: 121 PVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV++ +I  LR+KL N+   + + + R  GY +
Sbjct: 181 -GDTEHLSNVIDVYIRYLRRKLCNENEPNVIQTIRGSGYQL 220


>gi|270155525|gb|ACZ62810.1| hypothetical protein [Alcanivorax dieselolei]
          Length = 237

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  +    +      L  +++  +  ++  L        
Sbjct: 13  ILIIDDEVQIRRFLRISLQTEGYQVNEAATGGDGLALAETSQPALIVLDLGL--PDLDGQ 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IRA S VP+I +S        +   D G +D V KP   +E LARV      +  
Sbjct: 71  DVLGRIRAFSNVPVIILSVRDDEGEKVRALDLGANDYVTKPFGVQEFLARVRRHLGHVND 130

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  + G +R        E+ GE   L  +E  +L  L+ N  + + + Q+   ++
Sbjct: 131 AGVVRNEYDDGHLRFDLARHQVELAGEPVKLTPKEFNVLGILIRNADRVITQQQLLRQVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G   +  + + +   I +LR KL +       + ++  +GY  +
Sbjct: 191 GESHQH-DSHYLRILIGRLRHKLGDDPVAPTYLHTEPGVGYRFE 233


>gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 214

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           ++   +         +    D+  ++           E+ 
Sbjct: 2   IEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G +L                + D+  ++  L       +
Sbjct: 4   ILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLML--PNLSGI 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAA 114
           E+ R +RA+    P+I ++    +   +   D G DD + KP            +     
Sbjct: 62  EICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQV 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    K      + G I +  +      + E   L ++E  +LEYLM N+   + + QI 
Sbjct: 122 VISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQIV 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D   E NV + +I  LR K+  K     + + R +GY  
Sbjct: 182 SNVWG-YDYESETNVTDVYIRYLRSKIDQKYDTHYIRTVRGIGYQF 226


>gi|76788079|ref|YP_330584.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77406151|ref|ZP_00783223.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77412206|ref|ZP_00788526.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563136|gb|ABA45720.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77161747|gb|EAO72738.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77175231|gb|EAO78028.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 228

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +    DD   ++D  +     DG ++  F + +       + + D+  ++      G   
Sbjct: 4   IIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIM--MPGTNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR +  VP+I ++   S    +  F+ G DD   KP    ++   V A+++RL 
Sbjct: 62  LDVMKSIRQYDNVPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLD 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + +T    +       +       E  PL + E   L  L+       ++  + + 
Sbjct: 122 EKAIKNDTQYQFLDLTLDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  D  +E   V+  I +LRKK +       + +    G+ +
Sbjct: 182 IWGFDD--IESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKL 223


>gi|322832102|ref|YP_004212129.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
 gi|321167303|gb|ADW73002.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G S++   +     +L      D   ++  L   G    
Sbjct: 3   ILVIEDDVSTGDYLKKGLTEAGYSVDLARNGADGLFLALEEGYDAVILDVML--PGLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           ++  ++R  S VP++ ++    +Q  +   + G DD + KP    E++ R+   + R   
Sbjct: 61  QVMEVLRKKSDVPVLFLTARDEVQDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRPAA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +   L  +E  +L+ LM   G+ +++T I S ++ +
Sbjct: 121 REPDAYSVADLNLDVLRRRVTRQDQTIALTNKEFMLLQLLMRREGEVLSRTMIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDRSFEVKLIHTVRGIGYVCEV 221


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++           +++             +   D+  ++  L  K      
Sbjct: 4   LIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEK--DGFT 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +RA   + P++ ++    + + +   D G DD ++KP    E+LAR+ A + R  +
Sbjct: 62  VLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSHE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G IR+ ++ R   +  +   L  +E  +LE+L  NR + +++  +   ++G 
Sbjct: 122 QISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWGD 181

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            FD     N ++ HI  +RKKL ++ G   + + R +GY 
Sbjct: 182 AFDPFTMSNNIDVHIKNVRKKLNDQGG-RIIVTVRGVGYM 220


>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +                      D+  ++  L       LE
Sbjct: 8   LIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLML--PVLDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S  P+I ++   S+   +   DSG DD + KP    E+LARV A  RR+  +
Sbjct: 66  VARRVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  DGR+    G    L  +E  +LE    + GK   + +I   ++   
Sbjct: 126 VTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKVW--P 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ ++  LR+KL +      + + R +GY +
Sbjct: 184 EYTGGSNVVDVYVGYLRRKLEHDGERRLIHTVRGVGYVL 222


>gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
 gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
          Length = 285

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F+          +A  D   ++  L   G   LE
Sbjct: 70  LLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSL--PGIDGLE 127

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A I R   
Sbjct: 128 ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 187

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +   G + +        + G    L  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 188 QTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLY-N 246

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSA----FIRTVHGVGYTL 282


>gi|218529080|ref|YP_002419896.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240141918|ref|YP_002966426.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|218521383|gb|ACK81968.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011860|gb|ACS43085.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 244

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++     +  + G  + G  S      LQ     D+  ++  L   G    +
Sbjct: 13  LLVEDDDGIRALVTRILRESGYRVTGCRSGADMWSLQPDLAVDLVLLDVML--PGVSGFD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA   VP+I +S        +   + G DD V KP    E+LAR+ A+ RR  ++
Sbjct: 71  LLRALRAKGTVPVIMLSARNEEADRVLGLELGADDYVAKPFGRPELLARIRAVLRRASIA 130

Query: 123 NNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              A        +              + +G    L   E  +L   + + G+ + + QI
Sbjct: 131 PLPAAAARPEALAFAGWRLDLRSRALVDPEGAAVDLSGAEHDLLLVFLEHPGRVLGREQI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                G    A  +  V++ +S+LR+KL         + + R  GY +
Sbjct: 191 LEMCRGRL-AAPSDRSVDTLVSRLRRKLEPPEGAAPVIKTVRGSGYML 237


>gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          +       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    D G +++     E  ++L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGL--PKLDGI 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +     RA    P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLESWRRAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V+G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKLDC----DVIQTVRGLGYLL 216


>gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G     G++  + +  ++    + LQ   +  +  ++  L        
Sbjct: 3   ILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGL--PDLDGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R     VP++ ++   +++  ++  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  SLLRQWRRSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++        + +   +     G    L  +E  +L  LM   G+ V +  +   +Y 
Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSRLMMRAGQTVNREILQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  +  N +E HI  LR+KL    G + + + R +GY ++
Sbjct: 181 WQD-DLSSNTLEVHIHNLRRKL----GKERIKTVRSVGYRLE 217


>gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 264

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G                +    D+  ++  L        
Sbjct: 40  LLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLML--PDFDGF 97

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  H  VP++ ++   +    +     G DD + KP    E++AR+ A+ RR  
Sbjct: 98  TVLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRTS 157

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      + G + +  +  +    G++  L   E  +L YLM +    + K QI   
Sbjct: 158 EKPDARAVSLQVGDLTLDEETHEVRRGGQLAELTPTEYELLRYLMRHSPAVLTKAQILDH 217

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++  +D     NVVE  IS+LR+KL  +     + + R +GY
Sbjct: 218 VW-EYDFGGRSNVVELAISRLRRKLDAEAEP-LIHTVRGVGY 257


>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 246

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G +++        +   S    ++  ++  L   GE  L
Sbjct: 14  ILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLML--PGEDGL 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
            + R +R   +++P+I ++        ++  D+G DD + KP + RE++         +V
Sbjct: 72  SICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQV 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +      S+   E GP  +    R     GE   L   E  +L+ L+ +  + + + +
Sbjct: 132 KELPGAPSQSDESVEFGPYALDLSTRALTKHGESVALTTGEFAVLKALVQHPREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 192 LMNLARGR-EWSAMERSIDVQVSRLRRLIEDDPSNARYIQTVWGVGYVF 239


>gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   ++     E           D   ++  L        
Sbjct: 3   LLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIML--PKLDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA     P++ ++   ++   +   D G DD + KP    E++AR+  + RR  
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   T    +V  D +       +  L  RE  ILEYL+ N+GK +++ +I   I+ 
Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+ +      + + R LGY +
Sbjct: 180 NYDYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220


>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 238

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G         E  +    +   +V  ++  L   G+  L 
Sbjct: 15  LIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWML--PGQSGLS 72

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  RA S    +P++ ++        +   D+G DD + KP   +E+    R     R
Sbjct: 73  LARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 132

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++    G +R+ +       QG+   +   E ++L +LM +  +  +++Q+   +
Sbjct: 133 APEQLSDSVHIGELRLDAATYRVTFQGQPLKVGPTEFKLLHFLMRHTERVHSRSQLLDKV 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 193 WGDHVY-IEERTVDVHVKRLREALGAAS--VMVETVRGAGYRL 232


>gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas fluorescens WH6]
 gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +   A    DG  +      +    L  S R D+  ++  L        
Sbjct: 6   ILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLDLHKSWRPDLILLDVML--PRLSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S  P+I ++        L     G DD V KP   RE++ARV A+ RR   
Sbjct: 64  EVLSAVRRSSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAVLRRTTG 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S    +                     +   ++  L   E ++L  L+    K   + ++
Sbjct: 124 SQPVEQLLRHENLQVDLIAFTAAIEHRDAPPQLLDLTPTEFKLLVTLLKTPSKAFTRDEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L +      VV++H+  LR+KL        + + R +GY  
Sbjct: 184 LEIC--LPESEALARVVDTHVHNLRRKLETHGIAGVLVTVRSIGYRF 228


>gi|304440521|ref|ZP_07400408.1| DNA-binding response regulator [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370999|gb|EFM24618.1| DNA-binding response regulator [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 248

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      +   ++      +            ++ +   +       L
Sbjct: 34  ILVVEDDRTIREGISEYLSEFNYTVLEAKDGKEALQKFG---PSINLVILDIQIPFISGL 90

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F +  D  + KP     + AR+ ++ ++   
Sbjct: 91  EVLKEIRKTSSLPVLMLTAFNDEEYKIDAFTNLADGYMEKPFSLPVLKARIDSLIKKSYK 150

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E     V       +V G+   +  +E  IL  L+ N G+ + ++QI  +++   
Sbjct: 151 DVELFEYKDTEVNFTSYTAKVDGKSIDVNAKELEILRCLLDNEGRALTRSQIIDSVWKET 210

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ ++ +LRKKL+     D + + R +GY ++
Sbjct: 211 EEIPFDRVIDVYVKELRKKLKL----DCIVTIRNVGYKLE 246


>gi|293376778|ref|ZP_06623000.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644644|gb|EFF62732.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +     L   +G ++      E    + S    D+  ++           
Sbjct: 4   ILVAEDDKHARKLLETLLKREGYTVFTAEDGEKVLEILSIQHIDLIILDIM--MPKMDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R  +  +P++  +     +     F  G DD + KPI   E+L R+ A+ RR +
Sbjct: 62  EVARLLREANFTMPILMATAKHLPEDKKKGFIVGTDDYMTKPIDTEEMLLRIRALLRRSQ 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N R  T        D      + E+  LP++E  +L  L++  G+   + Q+   I+G
Sbjct: 122 IVNERKLTIGKVRLDYDALTVTRENEIQTLPQKEFYLLYKLLSYPGRIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  E  +   V  HI++LR K  N   F+ +   R LGY 
Sbjct: 182 MESETTDT-TVNVHINRLRNKFSNYPEFELIC-VRGLGYK 219


>gi|258645454|ref|ZP_05732923.1| DNA-binding response regulator ResD [Dialister invisus DSM 15470]
 gi|260402805|gb|EEW96352.1| DNA-binding response regulator ResD [Dialister invisus DSM 15470]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D         G +     + E    +  S + D   ++  L   GE    
Sbjct: 5   LIVEDEPAISDMERDFLEGAGYNPFIAENSEEALHMMRSEKIDAVILDVTL--PGEDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP----------IHHREILARV 112
           L R +R  + VP++  +        +     G DD + KP               +  R+
Sbjct: 63  LCRKLREITNVPILFATARTEDSDIVRGLGLGADDYLLKPLKGTILIAHLRAQLSVHMRI 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A      +       G + +    R   +  +   L  +E  +L +L  +  +  +K Q
Sbjct: 123 KAEQLNKSMPEEGITIGDLIIRPKARQVILNDKNVLLTGKEFDLLYFLATHPNEVFSKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           +F  I+ L D   E   V  HI++LR KL+   G     +++    GY    N
Sbjct: 183 LFEQIWSL-DPIGEPATVTVHINRLRSKLKKVSGRAYERIETVWGSGYRFHGN 234


>gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G ++E     E    +  S   D+  ++  L        
Sbjct: 4   ILIAEDDVQIASFVGKGLRAAGYTVEHVADGETALLMGRSPEIDMILLDIGLPA--MDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            + + +R      P++ ++   S+  T+   + G +D + KP    E    +        
Sbjct: 62  SVLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDA 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S     TG +R+    R  +V  +   L  RE  +LE  + +  + +++ QI   +
Sbjct: 122 PAAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     NVV+ ++  LR K+    G   +++ R +GY +
Sbjct: 182 WG-YDFDPASNVVDVYVRALRTKI----GAQRLETVRGMGYRL 219


>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
           protein TCRA [Mycobacterium bovis AF2122/97]
 gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium bovis AF2122/97]
 gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 253

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 82

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L       L
Sbjct: 3   LLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGL--PRMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R + S +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                         +   +    QG+   L  +E ++L  L++  G+ + +  +   +YG
Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +EA E N +E HI  LRKK       D + + R +GY ++ 
Sbjct: 181 WSEEA-ESNTLEVHIHHLRKK----FSTDLIRTIRGVGYLVEE 218


>gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
 gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 20/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +           +       ++ ++          +
Sbjct: 12  ILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIM--MPRMDGV 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H   P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 70  TMVIRLREHYDFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYNR 129

Query: 122 SN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                            N    G + +  D  +  V GE   L   E +IL  LM N G 
Sbjct: 130 FMALLNRKEEKDGGENSNIYRIGGLELNEDTVELMVDGEPAKLTPMEFKILSLLMKNPGH 189

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +   I+  ++   + A+  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 190 VFSADDIYERVWN--ERAINTDTVMVHVRNIREKIELDPKKPKYLKVVWGVGYKIEK 244


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
 gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSN 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   +R++   ++     ++  L   E  +L + + N G  + K  +  
Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++  +S +         + ++  ++  L    E   
Sbjct: 5   IIVIEDEFSINDILTFALKGEGYKVKSASSSKEAREFLQDFKPNLVLLDINL--PDESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I A+ ++P+I ++    +   +   + G DD + KP H +E+L RV    RR+  
Sbjct: 63  ELCKFINANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALRRVDK 122

Query: 122 SNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N          +D        R     G+   L  +E  +L + + N+ +   + +I 
Sbjct: 123 YRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTREEIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G+ D   E   V+ H+ +LR KL    G   +++   +GY +
Sbjct: 183 DKVWGI-DYCGEIRTVDIHVRRLRAKLNLDSGQSFIETVFGVGYVM 227


>gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001]
 gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++       GD G  +    + +       S R D+  ++  L   G+  L
Sbjct: 7   IWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLML--PGDDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            L R +R      P++ ++        +   + G DD + KP   RE        +  R 
Sbjct: 65  CLLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRG 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +      +   +    G   +    R  E QG+   +   E  +L     +  + +++ +
Sbjct: 125 SGPAGAPQAEASPIPFGAWVLHPSSRQLERQGQPVSITSGEFSLLLAFAQHPHRPLSRER 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +     G      +   ++  +S+LR+ + +       + +    GY  
Sbjct: 185 LIELSRGPT-SDTDARSMDVQVSRLRRLVEDDPSQPRHIQTVWGYGYVF 232


>gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1]
 gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1]
          Length = 240

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   V     A+    G  +    + E     L  +       +   L    +  
Sbjct: 3   LLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPADAPPFGVVLLDLGLPDQDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR  
Sbjct: 63  YEVCGKIRKRTSTPVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVARRTG 122

Query: 121 VSNNRAETGPIRVFS----------------DGRDPEVQGEVFPLPRRERRILEYLMANR 164
            S N A   P    +                  R   V G   PL R+E  +L  L    
Sbjct: 123 GSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALLAQRP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G    + QI S ++           +E H++ LR KLR       +++ R +GY +
Sbjct: 183 GVVFRREQIISEVW-RTSWEGTGRTLEVHVASLRSKLR---MPALIETVRGVGYRL 234


>gi|187923506|ref|YP_001895148.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|187714700|gb|ACD15924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEIKTGTYLRKGLTEAGFIVDWVEDGLTGQHRALTEDYDLIVLDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + + +R      ++ ++    +   +   + G DD + KP    E+LARV +I  R   
Sbjct: 61  TVLKNLRRTHSTSVLLLTARDEVDDKVRGLNMGGDDYLVKPFDFAELLARVRSILRRGQT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    R     G++  L  +E  +L  LM  +G+ + ++ I S ++ +
Sbjct: 121 RDAASLQVANLVLDLTRRKATRHGDMILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPKLIHTVRGMGYVLEE 221


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   +   +++     E       +   D+  ++  L       +
Sbjct: 3   ILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVML--PKLNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR     +P++ ++   + +  +   D G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ N   E   +R+     +     ++  L  +E  +LE  + N    ++++ I   ++ 
Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D    E  V+ HI  LRKKLR      D +++   +GY +
Sbjct: 181 FED-PPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRL 221


>gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPKMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V  +   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR+   G + + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 221

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         ++G ++   NS   ++ L+     D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNVI--NSYTAKDALEKLNDTDLVILDIML--PDMEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR + 
Sbjct: 60  EVLKE-ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|227877262|ref|ZP_03995335.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|227863118|gb|EEJ70564.1| response regulator [Lactobacillus crispatus JV-V01]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   V +     F  +G   +          +     +    I   L    +  +++ 
Sbjct: 2   VEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGIQVA 61

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           + +RA S   P+I ++   S    +     G D+ V KP     ++AR+ A++RR+ +  
Sbjct: 62  KEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMMEE 121

Query: 124 NRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A T                             V  L  +E  +L  +     +  ++ 
Sbjct: 122 EPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 182 QLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 229


>gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
 gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N A    +         D R+  V  +   L  RE  IL+ LM    K   K  +F +
Sbjct: 125 FSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|153939744|ref|YP_001390056.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935640|gb|ABS41138.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318142|gb|ADF98519.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  ++   +    E L  + + D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSL--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRR 118
           +L + IR  S+VP++ ++        +   D G DD + KP         +  +      
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  + V     +    G+   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNGMNVQLLKGEVYKNGKQLDLTASEYKLLCMFMENPDIVLSPEQILSRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
              +  ++ N +  +I +LR K+ +       + + R +GY 
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYK 223


>gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +    G ++    S         +    +  ++  L   G    
Sbjct: 7   IIVVEDDNDINNMLKIMLERKGYNVVQAYSGTEALLHVKTQEFQLMLLDLML--PGISGD 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S +P+I IS   S  T +     G DD + KP    ++ AR+ +  RR   
Sbjct: 65  ELLQKVRGISAMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYIK 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N++     + + S   +  V G+   L  RE +ILE L+ N+ K  +K  +F 
Sbjct: 125 FGKDESFNSKIVFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLFE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220
           +++       ++N +  HIS LR K L+     + +++   +GY +
Sbjct: 185 SVW-EDTYMGDDNTLNVHISNLRNKLLKANSKEEYIETVWGMGYRL 229


>gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator
           protein [Alteromonas sp. SN2]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G  +E   +         +   ++  ++  L        
Sbjct: 3   ILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVML--PDINGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +   +R      P++ ++   S+   +   + G DD + KP    E+LARV     R  
Sbjct: 61  RILESLRQSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ N  +   +++    R  +  G+   L  +E  +LE ++  +G+ + ++ I S ++ 
Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   + NV++  I +LR K+ +      + + R +GY +
Sbjct: 181 I-NFDSDTNVIDVAIRRLRAKIDDAFSPKLIQTVRGMGYKL 220


>gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 256

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++         G  ++        + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R     S++P++ ++   S +  +  F+SG DD + KP    E+L R+ A+ RR  
Sbjct: 65  CQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRSD 124

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +    +   I  +          +     E   L   E  +L  L+   G+ VA + I 
Sbjct: 125 RAPLSTKHNEILNYGCLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|310828178|ref|YP_003960535.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739912|gb|ADO37572.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +    +   DG  +   +       +      D+  ++      G    
Sbjct: 4   ILAVDDEKGILNLVKRVLEKDGHQVRTLSDP-AALSMNGLEAFDLILLDVM--MPGTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR +   P++ ++     +  +     G DD + KP  + E+ ARVAA  RR K 
Sbjct: 61  TLCRKIRENVDCPILFLTAKTMEKDIMYGLGIGGDDYITKPFGNGELRARVAAHLRREKR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +     F+ G    +   +   L + E  I E+L  + G+  +K QI+ A+YG 
Sbjct: 121 EKRSVLSLDGIRFNLGAHEMIIGEQKVSLTKSEYAICEFLARSHGQVFSKEQIYEAVYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++   + + +  H+  +R KL       P+++   +GY 
Sbjct: 180 YEGEGDSSAIAEHVKNIRAKLSVYGCA-PIETVWGIGYK 217


>gi|257486326|ref|ZP_05640367.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320324926|gb|EFW80998.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329081|gb|EFW85079.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|331010614|gb|EGH90670.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       + +
Sbjct: 60  KMIRSQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214


>gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 87/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++          L  S   D+  ++  L        
Sbjct: 3   ILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVML--PSLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
            + + +R   +  P++ ++    ++  +   + G DD + KP      +      + R  
Sbjct: 61  AILQTLRRSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +   +  + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRVKVDDPFEPKLIRTVRGMGYVLE 221


>gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
 gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
          Length = 241

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++  ++    + +  +   D+  ++  L        
Sbjct: 3   LLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +RA  + VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ +R +   + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDGFDARLIQTVRGMGYVLE 222


>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 248

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  +V+    +     G  +      E         +  +  ++          L
Sbjct: 17  ILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDI--EMPRVGGL 74

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   ++    G DD + KP +  E+LAR+ A+ RR  
Sbjct: 75  AVLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQA 134

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP---RRERRILEYLMANRGKRVAKTQIFSAI 177
            +    +           D              R E  IL+ L    G  V++ ++F  +
Sbjct: 135 ATETPIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLV 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G +    E   +++H+ +LRKK+ +       + +   +GY +D
Sbjct: 195 WG-YTYLPETRTLDTHVWRLRKKIGDTGEEPRWIKNVPGVGYQLD 238


>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 240

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V+  +  L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVEETIVELTRTEFELLVALALRPGQALTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRM 237


>gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
 gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 19/232 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++   A    +G    G  + E    +  +   D+  ++  L   G   
Sbjct: 6   LIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIML--PGMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IRA ++VP+I IS   S    +   + G DD + KP   RE++AR+     R  
Sbjct: 64  FELCRRIRAEAEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWY 123

Query: 121 VSNNRAETG------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             N+                  +++  + R     GE   +  +E  +L     +  +  
Sbjct: 124 KFNHAEHVPRLAAASPELSNGRLQLLLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++ ++++G  D    +  V+  I +LRKK+        +++    GY +
Sbjct: 184 TRDELLTSVWG-DDYFGSDRAVDHLIKRLRKKVEQLP----IEAIWGHGYRM 230


>gi|289422899|ref|ZP_06424728.1| two-component system, response regulator [Peptostreptococcus
           anaerobius 653-L]
 gi|289156686|gb|EFD05322.1| two-component system, response regulator [Peptostreptococcus
           anaerobius 653-L]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDNNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++ E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLDKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEIPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
 gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F   G  +    +        +  + D+  ++      G    
Sbjct: 5   ILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLA-RKPDIILLDV--SMPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+H   P++ ++     Q  ++    G DD + KP    E+ ARV A  RR + 
Sbjct: 62  EVCRRIRSHISCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHLRREER 121

Query: 122 SNNRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        +          + +   L + E  I+E L  N G+  +K Q++    
Sbjct: 122 KRLNGSVLMSDRLAIRYSERSVYYENDQVNLTKMEFDIVELLSMNPGQVFSKDQLYEKTR 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D A + ++V  HI ++R KL        +++   +GY 
Sbjct: 182 G-YDGAGDSSIVTEHIRRIRTKLAEYTEKSYIETVWGVGYK 221


>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 238

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 83/230 (36%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +    + G  +           L    + D+  ++  L       L
Sbjct: 8   ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWML--PQLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R IR     P++ ++        +   + G DD + KP              R    
Sbjct: 66  EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               +    + +      G + +        ++ +   L   E  IL+ L+ N G+  ++
Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   I+G       +  V++ + +LRKKL +    D +++   LGY +
Sbjct: 186 NYLLDTIWGQS-YVGGDRSVDNAMLRLRKKLADFG--DAIETVWGLGYRL 232


>gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F      +E     E   +L S    D++ ++  L       +
Sbjct: 3   LLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGL--PKLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +RA     P++ ++     Q  +D  ++G DD + KP H  E+ AR  A I R  
Sbjct: 61  EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      GPI + +  +   + G    L   E   LEYL  N GK ++KT +   +Y 
Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+ + R LGY  
Sbjct: 181 Q-DFERDSNVIEVFIGRLRKKLDPDGDLKPIKTVRGLGYRF 220


>gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 5   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R +R     +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 63  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 225


>gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  N       L +S + D+  ++  L       L
Sbjct: 17  ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRML--PQLDGL 74

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
           +L   +RA     P++ +S    +   +    +G DD + KP    E  + A       +
Sbjct: 75  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 195 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 235


>gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V  +   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR+   G + + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|307300861|ref|ZP_07580636.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320002|ref|ZP_07599424.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306894379|gb|EFN25143.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306904395|gb|EFN34980.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    +         +A  DV  ++  L        
Sbjct: 6   ILVVDDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTAAPDVVILDLGL--PDMDGK 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IRA SQVP+I +S        +   D G DD + KP    E+ AR+ A  R    
Sbjct: 64  DVVANIRAWSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRHRIQ 123

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R     G    L  +E  +L  L  + G+ V    + ++++
Sbjct: 124 MAGGQAQLSADGLSIDMVKRVVTRDGAALRLTPKEYDLLVMLAHHAGRVVTHRTLLTSVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           GL     + + +   I +LR K+  +      V ++  +GY  
Sbjct: 184 GLAHGE-DLHYLRVFIGQLRGKIERDPGNPKIVRTEPGVGYRF 225


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A ++D  +      G  +   +  E           D       ++  G    
Sbjct: 4   ILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGIDGF 63

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +   +  + +I +S        +     G DD V KP    E+LARV ++YRR+ 
Sbjct: 64  QVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYRRVA 123

Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ + +E             +    R     G++  L + E +I+EY  +N G  + +  
Sbjct: 124 LAQSHSENNFKEELKSGEFTLNLRNRALMKSGKMIELTQVEFQIMEYFFSNPGVALDRID 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I + ++G      E+ +V+ +I +LR K+ +       + +   LGY  D
Sbjct: 184 ILNHVWG-DAYVGEDKIVDVNIRRLRMKVEDEPSNPKHIITVWGLGYKWD 232


>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 242

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    NS E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKAHFPIDHHLKTVYGVGYR 236


>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
 gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +    S      +    + D   ++      G    E
Sbjct: 9   LVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVM--MPGMDGFE 66

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------I 115
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+         
Sbjct: 67  LLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAQ 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +N      + +  D  +    G V  L   E  +L YLM N    ++K +I  
Sbjct: 127 VAEEVEDDNVLTYDDLVLNDDTHEVTKGGTVVELSPTEFNLLRYLMLNAEVVLSKPKILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 187 NVW-HYDFGGDGNVVESYISYLRRKI-DTGDVPLIHTVRGVGYVL 229


>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
          Length = 290

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 58  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 115

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 116 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 175

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 176 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 235

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 236 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 283


>gi|77459613|ref|YP_349120.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383616|gb|ABA75129.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +   +  +         +  V  ++  L   G+  L 
Sbjct: 10  LLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLML--PGQSGLH 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R IR+ S  P++ ++        +   +SG DD V KPI        L  +       
Sbjct: 68  VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVPD 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E G + +    R+  + GE+  L   E  +L  L +  GK +++  I + + G
Sbjct: 128 SGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNRMRG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +         V+ +ISKLR KL++       + +    GY  +
Sbjct: 188 IA-FDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFN 229


>gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 244

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +         ++G  +E  +S     E L  S   D   ++      G   
Sbjct: 8   ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIM--MPGMSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA  QVP++ ++        +   + G DD + KP + RE+ AR+ AI RR +
Sbjct: 66  LDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +   A    I + +  R   V     PL   E   L  LM   G+ + K 
Sbjct: 126 NSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTITKQ 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +     EA +   ++ HIS++R+KL ++   D + S R +GY +
Sbjct: 186 DMTQEVLNRPLEAYD-RAMDVHISRIRQKLSSQGINDVIKSIRGVGYQM 233


>gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 244

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +++         G ++    S      +  +   D+   +      GE  L
Sbjct: 9   ILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSVDLVVSDIM--MPGEDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P+I ++        +   + G DD V KP + RE++AR+  + RR + 
Sbjct: 67  SLTRHLRETSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVLRRTQQ 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    + G                           L   E  +L  L+ +  + +++ ++
Sbjct: 127 NGRSLDAGGTCYAFGDWVLREVERVLVDGKGSEVALSSGEYHLLHALVRHPRQVMSRDRL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              + G  +  + +  +++ +S+LRKK+  +      V +    GY++
Sbjct: 187 LDLVRGR-EADIFDRAIDNLVSRLRKKIEADPAHPQIVKTVWGGGYTL 233


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G  +                R D   ++  L       LE
Sbjct: 23  LVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVML--PDLDGLE 80

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR  +
Sbjct: 81  VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSGM 140

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +  +      + +  D  +         L   E  +L +LM N  + ++K QI   +
Sbjct: 141 TAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 201 W-HYDFGGQSNVVELYISYLRKKI-DNGRAPMIHTVRGAGYVL 241


>gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 262

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     + +P++ ++     +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     GP+ +  +  +     +   L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGSSNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIEAIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G ++           +      D+  I   L+       
Sbjct: 6   ILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREE--DIHLIIMDLMMPNLDGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R   ++P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  RATIELRREKEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIRRYTR 123

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++        V            ++  V G+   L   E +IL  LM+N G+  +  +I
Sbjct: 124 FSSMTNDKNKEVIAVGGLELNRLNKEVNVNGKEAKLTPLEFKILSLLMSNLGRVFSIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++      V+   V  HI ++R+K+  +      +     +GY +D 
Sbjct: 184 YERVWNEAPYNVD--TVTVHIRRIREKIEIDPRNPQYLKVVWGVGYKVDK 231


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G ++   ++ +      ++ + DV  ++  L        
Sbjct: 4   ILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVML--PDIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ + IR  S+VP++ I+   + Q  +   D G DD + KP   +E++AR+ A       
Sbjct: 62  EVCQCIRKVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRTED 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +        + G    L ++E  +L  L ++ G+  ++  +   ++G
Sbjct: 122 NPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              E+ +   V+S + +LR KL         + +   +GYS 
Sbjct: 182 YSGESYD-RAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGYSF 222


>gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
          Length = 237

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 265

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +++        +G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     + +P++ ++     +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALLRRSD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     GP+ +  +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
 gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   +  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL+ +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDAN 223


>gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G   +     E    L       +  ++  L        
Sbjct: 6   ILIVDDEQELSGIIAEMLAGCGYDTDTAADSEHAYSLLGQKNYHLILLDINL--PDGTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           E+ R +R  S VP+I  S   +    ++ FD G DD + KP   +E+L+RV         
Sbjct: 64  EICRQLREASHVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAYG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +++ +  R     G    L +RE  +L  L  N+   V K ++ S ++G
Sbjct: 124 GEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            F   VE + +  HI  LR+KL +       + +   LGY ++
Sbjct: 184 AF-SEVEPSTLTVHIRWLREKLEDDPAAPVYIKTVWRLGYMLE 225


>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
 gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  +     +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  +  +  +P++ ++        L   + G DD + KP   RE+ ARV       +
Sbjct: 64  ELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|238917433|ref|YP_002930950.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238872793|gb|ACR72503.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             S    D++ +   +       L
Sbjct: 3   ILTVEDDNMIREGLSEYLSEFGYTVIQAKDGREAL---SEFNSDINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F +  D  + KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EETPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|152989182|ref|YP_001345963.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PA7]
 gi|150964340|gb|ABR86365.1| two-component response regulator CreB [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVPLAGEALALQERQPADLLILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E     GP +V ++       G    L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAPLEEAALHGPFQVDAERVRIHYHGAPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            G+  EA  E  ++SHI  LR KLR      + + + R LGY
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNARGEAIQTHRGLGY 222


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D   A+   +G  +E     E    L SS   D+  ++  L   G   L
Sbjct: 3   LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWML--PGHSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           +L R +RA  + VP++ ++   ++ + L  F++G DD + KP      +    A + R  
Sbjct: 61  DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++    G + +    +     G    L  +E ++LEY M + G+ +   QI   ++ 
Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    NVV + +  LR+K+    G   + +    GY  
Sbjct: 181 SGAE-PNSNVVAAQVKLLRRKIDKDAGTALIHTVYGQGYRF 220


>gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
 gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F + G  +    ++E  + L +    ++  ++  L   GE  L
Sbjct: 14  ILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLML--PGEDGL 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
              R +R  ++Q+P+I ++      + +   + G DD + KP + RE        +  + 
Sbjct: 72  SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQA 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +     G   +    R+ +   EV  L   E  +L+ L+ +  + + + +
Sbjct: 132 PVVPGAPGAEDESVSFGDYELSLATRELKKGEEVHMLTTGEFAVLKALVQHAREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 192 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 239


>gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 237

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +G ++E   +         +   D+  ++  L       +E
Sbjct: 6   LVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVML--PEINGVE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR   +  P+I ++   +    +   D G +D + KP    E+LAR+ A  R    
Sbjct: 64  VLKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQME 123

Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     +                R    +G    L  +E  +L YLM ++ + + +
Sbjct: 124 PIATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++G FD   + NVV+ +I  +RKK+ +      + + R +GY I
Sbjct: 184 DQMIQDVWG-FDFVGDTNVVDVYIRYVRKKIDHGYKKKLIKTVRGVGYCI 232


>gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
 gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKK++ K   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKMQAKHEGEVITTIRGQGYRFDAN 223


>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G  ++  ++      L      D+  ++  L    +  L
Sbjct: 3   ILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWML--PQQSGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           ++ + +       P++ ++   ++   +   D+G DD + KP   R     + A +    
Sbjct: 61  QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++++ ++  + + S+ +     G    L  +E ++L   M + G+ +   QI+  
Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   ++    NVV + +  LR+K+        +++    GY    N
Sbjct: 181 LWSEGEQ-PNSNVVPALMRLLRRKIEAAGETPLINTVYGKGYRFGEN 226


>gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114
           E+ R++R +    P++ +S        +    +G DD + KP +        + + R   
Sbjct: 65  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +       +GPI V        V G+   L   E  IL  L +  G+  +   IF
Sbjct: 125 QMSQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 185 EKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 231


>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     E           D+  ++  L       +
Sbjct: 16  ILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGL--PKRDGV 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +R+     P++ I+   ++   +   D+G DD + KP    E+ AR+ A I R+ 
Sbjct: 74  DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            + E +  N VE +I  LRKKL    G D + + R LGY 
Sbjct: 194 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYM 228


>gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++      L    G+  E   +      L  ++  D+  ++  L   G   LE
Sbjct: 4   LIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNL--PGLDGLE 61

Query: 63  LPRIIRAHSQVP--LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R +R        ++ ++   SL   +   + G DD + KP     + AR+ A+ RR  
Sbjct: 62  VCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRAS 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +      S DGR      +   L  +E  +LE LM   G+  +K Q+  A + 
Sbjct: 122 RPLQEDWSWGGLKLSLDGRTASFNQQDLRLTPKEHALLEALMKAGGRTCSKDQLIEAAWA 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             D   +E  V++H+  +R KL       D +++   +G+ ++
Sbjct: 182 WADVPGDE-SVKTHVKNIRAKLNQTGAPADLIETVYGVGFRLN 223


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E                 D   ++  L   G   LE
Sbjct: 8   LIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLML--PGVDGLE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           + +    R+  V G++  L  RE  +L +   N GK  ++  + 
Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKL 231


>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++GV +           +       +  ++          + 
Sbjct: 7   LVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVM--MPRLDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATHRIREEKNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +          + ++  VQG+   L   E +I+E LM N G+  +   I+  
Sbjct: 125 GTFEGIKKVIDLNGLTIDKESKEVTVQGDPVKLTPIEYKIVELLMTNAGRVFSINDIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++       E N V  HI K+R+K+  +      +     +GY ++ 
Sbjct: 185 VWKEPGYNAE-NTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230


>gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L       L
Sbjct: 3   ILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRML--PKRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 61  SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDVPLLHTVRGAGYML 221


>gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
          Length = 214

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214


>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
          Length = 252

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 20  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 77

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 78  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 137

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 138 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 198 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 245


>gi|150388130|ref|YP_001318179.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149947992|gb|ABR46520.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 216

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 8/221 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   +++         G         E      ++ + D+  ++  L    +  
Sbjct: 3   VILIIEDEDPIRELIKLNLVMAGYETLEACDGEEGLQYLNNEKIDLVLLDVML--PQQDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   I     +P I ++    L+  +   + G DD V KP    E+LARV  + RR  
Sbjct: 61  YTLLPKILK-KNIPTIMLTAKDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRRSD 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     I +  D       G+   L  +E  +L  L+ N+G  +++ ++   ++G 
Sbjct: 120 KEKTKIVMDDIEICLDQWKVLKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++       V+ HI +LR K+        + +   +GY ++
Sbjct: 179 YEFEGNTRTVDMHIQRLRNKIGADK----IKTIYKVGYRME 215


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  + G  + E  + L +     +  ++  L   GE  L 
Sbjct: 9   LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLML--PGEDGLS 66

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  V
Sbjct: 67  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 126

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G  ++    R+    GE   L   E  +L+ L+++  + +++ ++
Sbjct: 127 ELPGAPSAAEKVVNFGAFQLNLATRELSRDGEPMALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  +    E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 187 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 233


>gi|325838529|ref|ZP_08166551.1| putative transcriptional regulatory protein CssR [Turicibacter sp.
           HGF1]
 gi|325490824|gb|EGC93126.1| putative transcriptional regulatory protein CssR [Turicibacter sp.
           HGF1]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +IDD A ++   +     +G  +  F + E      +  + D   ++  + G     L+L
Sbjct: 6   VIDDDANIRQLILRYLEKEGYKVTAFENAEHVFEAFNMLQPDALVLDIMMPG-TMDGLDL 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAIYR 117
            + IR  SQVP+I +S        +   + G DD ++KP   R      +I+ R      
Sbjct: 65  CKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVRLKIIFRRIEPVM 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   +++    R   V+ +   L   E  +L YL+ N+     +  +   I
Sbjct: 125 VSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKNISFTRENLIQNI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   E  +++  + +LRKKL++      + +    GY ID N
Sbjct: 185 WG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229


>gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G +L+ F   E  +    +A  D   ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTL--PGIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  RA  +  P++ ++   +L   ++    G DD + KP    E+ AR+ A I R  
Sbjct: 61  DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  + G + +  D       G   PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|118479956|ref|YP_897107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419181|gb|ABK87600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 249

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 22  ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 80  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 139

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 140 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 199

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 200 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 244


>gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493]
 gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G            + +      D+  ++      G+  L
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIM--MPGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA+S +P++ ++        +   + G DD ++KP + RE+LARV AI RR + 
Sbjct: 65  TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVA 169
                                  +               L   E  +L  L+    + ++
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   +    +    +  ++  IS+LR KL  +      + + R  GY +
Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +    +        S++   +        +    D   ++  L   G   L
Sbjct: 3   ILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIML--PGVDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P++ ++    +   +   DSG DD + KP   +E+LAR+  + RR  
Sbjct: 61  EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   T    +V    R     G+   L  +E  +LEYL  N G  +++ +I   ++ 
Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ +I  LRKK+        + + R +GY +
Sbjct: 180 NYDYEGGSNVVDVYIRYLRKKIDEGRQPKLIHTVRSVGYVL 220


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIML--PEINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP         I   +     
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp]
 gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F + G  +    ++E  + L +    ++  ++  L   GE  L
Sbjct: 14  ILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLML--PGEDGL 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
              R +R  ++Q+P+I ++      + +   + G DD + KP + RE        +  +V
Sbjct: 72  SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQV 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +     G   +    R+ +   +V  L   E  +L+ L+ +  + + + +
Sbjct: 132 PVVPGAPGTEDESVSFGEYELSLATRELKKGDQVHMLTTGEFAVLKALVQHAREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 192 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 239


>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 237

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G  +E     +    +      ++  ++  L G  G + 
Sbjct: 5   ILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R       +P++ ++        +   DSG DD V KP   +E++ARV A+ RR  
Sbjct: 65  AKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQM 124

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +            P         P  + +   L   E R+L++ MAN  +  ++  +
Sbjct: 125 PIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRASL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G  +  +EE  V+ HI +LR  L        +++ R  GY I
Sbjct: 185 LDKVWG-SEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRI 230


>gi|87198466|ref|YP_495723.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134147|gb|ABD24889.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++         G  +    +             D+  ++      GE  L
Sbjct: 8   ILLVDDEPALREPLADYLVRQGFVVTQAGTAAEARSRLLETGCDLVLLDIM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +    ++P+I I+        +   + G DD V KP   RE++AR+ ++ RR   
Sbjct: 66  SLCRHLVESKRLPVIFITAKGESTDRIVGLEIGADDYVVKPFDPRELVARIRSVLRRATK 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174
            ++      I  F   R   ++  +         +   E R+L   + +  + + + ++ 
Sbjct: 126 QSSEVSDEVIYEFEGWRLDPLKRRLIDAEGAVVAISSAEFRLLMAFLDHPRQVLDRDRLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + G      +   V++ IS+LR+K+  +    + + +    GY +
Sbjct: 186 DMVQGREAHLFD-RAVDNQISRLRRKIEVDSRNPELIQTVWGGGYML 231


>gi|154244586|ref|YP_001415544.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158671|gb|ABS65887.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 255

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 85/238 (35%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    S    + L ++   D+  ++      GE  L
Sbjct: 14  IIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVH--MPGEDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR+ +  P+I ++    +   +   + G DD V KP   RE+ AR+ A+ RR   
Sbjct: 72  TLARRIRSAAATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTA 131

Query: 122 SNNR------------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                                                   G    L   E  +L   + N
Sbjct: 132 VPPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRVFLQN 191

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + + + ++    +   +E  +   ++  +++LRKK+  +      + + R +GY  
Sbjct: 192 PNRVLTRDRLLDLAHDRDNEPFD-RSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYLF 248


>gi|152966752|ref|YP_001362536.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361269|gb|ABS04272.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G +            L  +   D+  ++  L        
Sbjct: 4   ILIAEDETRIAAFVEKGLRANGYATTIATDGRTAHDLAGTGLFDLLILDIGL--PVVDGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P+I ++   ++  T+   D G DD V KP    E+LAR+    R  +
Sbjct: 62  TVLRRLRAERHALPVIILTARDAVADTVAGLDGGADDYVTKPFRFEELLARIRLRLRDDR 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G +++    R   V G    L  RE  + E  + + G+ +++ Q+ S+++G
Sbjct: 122 AAEVTVLAAGELQLDLLSRTAAVAGRSVALSSREFSLAEAFLRHPGQVLSREQLLSSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ ++  LRKKL    G    ++ R +GY +
Sbjct: 182 -YDFDPGSNVVDVYVRYLRKKL----GAGRFETIRGMGYRL 217


>gi|22538189|ref|NP_689040.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012047|ref|NP_736442.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76797838|ref|ZP_00780102.1| putative two-component response regulator [Streptococcus agalactiae
           18RS21]
 gi|77412950|ref|ZP_00789153.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535099|gb|AAN00913.1|AE014284_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413590|emb|CAD47668.1| gbs2009 [Streptococcus agalactiae NEM316]
 gi|76586798|gb|EAO63292.1| putative two-component response regulator [Streptococcus agalactiae
           18RS21]
 gi|77160962|gb|EAO72070.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +    DD   ++D  +     DG ++  F + +       + + D+  ++      G   
Sbjct: 4   IIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIM--MPGTNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR +  +P+I ++   S    +  F+ G DD   KP    ++   V A+++RL 
Sbjct: 62  LDVMKSIRQYDNIPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLD 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + +T    +       +       E  PL + E   L  L+       ++  + + 
Sbjct: 122 EKAIKNDTQYQFLDLTLDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  D  +E   V+  I +LRKK +       + +    G+ +
Sbjct: 182 IWGFDD--IESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKL 223


>gi|317488673|ref|ZP_07947213.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831617|ref|ZP_08164834.1| putative transcriptional regulatory protein ResD [Eggerthella sp.
           HGA1]
 gi|316912232|gb|EFV33801.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486488|gb|EGC88937.1| putative transcriptional regulatory protein ResD [Eggerthella sp.
           HGA1]
          Length = 237

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +      +   +G       S          A  D+  ++  L G     L
Sbjct: 6   ILVVEDDADINALLAKIAAREGFGCVQAYSGTEALLQMERAAFDLVLLDMMLPGMDGPTL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                    S+VP+I +S        +    +G DD V KP    E+ AR+ A+ RR   
Sbjct: 66  MACMRDELASRVPVIVVSAKAGSADKVGMLAAGADDYVTKPFDPDEVAARIHAVLRRAAG 125

Query: 122 SNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVA 169
           ++  A  G +    +                        L   E  IL  LM +  K  +
Sbjct: 126 ASAAAGAGGVCPDDEALVHRDLRLDVARRRVTLGDAEVALTAHEFDILHVLMRSPDKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +  ++  ++       E+N V  H+S +RKKL    G  D + +   +G+ +
Sbjct: 186 RELLYELVW-KNGYYGEQNAVNVHVSNIRKKLAAAGGAGDYIKTVWGIGFKL 236


>gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
 gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  +V           G  +      E  E   S+A  DV  ++          L
Sbjct: 5   ILLAEDDTIVAHQLTLTLETAGHEVTHVGDGEQGEARASAAEFDVLIVDRM--MPKRDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+       A    
Sbjct: 63  TMVSNLRSQGVNTPVLILSALGQVDDRVAGLRAGGDDYLTKPYAQTELLARVEALARRST 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ +   +  G + +    R  E  GE   L  RE R+L+YLM + G+ V +T +   ++
Sbjct: 123 VQATETSSSVGDLSLDRLSRKAERSGEEIILQPREYRLLDYLMRHSGQLVTRTMLLENVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +   + NV++ H+S+LR K+        + + R  GY ++
Sbjct: 183 -ELNFDPQTNVIDVHVSRLRSKIDKGFDKPLLHTVRGKGYRLE 224


>gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G ++    +       +   + D+  ++           
Sbjct: 5   ILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALK-EVEKKPDIILLDVN--MPDIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   IR +   P+I ++        +  F  G DD V KP    E    +A      +R
Sbjct: 62  TVCERIRDYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRREKR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+       + +    R      +     ++E  I+ +L  N+G    +  I+  ++
Sbjct: 122 HNTSSKVQFDEDMVIDYSSRIVFYHNKDMAFTKKEFDIISFLSQNKGIVFDRETIYEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL D   +  VV  HI ++R K  +      +++    GY 
Sbjct: 182 GL-DGIGDNTVVTEHIRRIRAKFLSLGDRPYIETVWGCGYK 221


>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 214

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536]
 gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli]
 gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR   S +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|49081810|gb|AAT50305.1| PA4885 [synthetic construct]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVILDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+  + RR  V
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      ++    R    QG+V  L  +E  +L  LM   G+ +++T I S ++ +
Sbjct: 121 REAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+ N      + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEE 221


>gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A++ DG        G +++   +    +    +   D+  ++  L       L
Sbjct: 3   ILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGL--PKLSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA +SQ+P++ ++        +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRSA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   + G +     GR  ++QG+   L  RE  +LE L++  G+ V+K Q+   + G 
Sbjct: 121 GTSPTIQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 180 WGEEVSHNAIEVYVHRLRKKIE--PGGVKIATVRGLGYCLE 218


>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++   +      G  +    +             D+  ++           
Sbjct: 4   ILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIM--MPEVDGF 61

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  +       V +I ++     +  +     G DD + KP    E+LAR+ ++ RR++
Sbjct: 62  AVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVE 121

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               R +       P R+    +  +  G    +   E  +L + + N  + +++ ++  
Sbjct: 122 TLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           A++G  +   +   V+ +I +LR+K+         +++    GY 
Sbjct: 182 AVWGE-NYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYK 225


>gi|330821252|ref|YP_004350114.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373247|gb|AEA64602.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 266

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG +               +    +  ++  L G+G   L
Sbjct: 10  ILIVEDEPKLSALLADYLHADGYATAIVADGREVVPHVRAHAPSLVLLDLMLPGRG--GL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I ++        L   + G DD V KP   RE++ARV AI RR++ 
Sbjct: 68  DICRELRGFSTIPVIILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRIEQ 127

Query: 122 SNNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +  + +                  +  +     + G    L   E R+L  L+AN G+  
Sbjct: 128 AERKGKGEAGHEANAADGGAAPFEIDPEHHVARLDGRNLHLTPVELRLLALLVANPGRIY 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++  +   +Y      V +  V+SH+  LR+KL+  +   D + S   +GY  +
Sbjct: 188 SRDFLLRRLYDDH-RVVTDRTVDSHVKNLRRKLQAVRPERDFIRSIYGVGYQFE 240


>gi|325262690|ref|ZP_08129426.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324031784|gb|EGB93063.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++           G  +E   +    + +    + ++  ++  L        
Sbjct: 4   ILVVEDDRILNMTLTYNLKSAGYEVESVTNAADAKAIIEKKKYELVVLDVNL--PDGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A     +I ++        L  ++ G DD V KP        +VAAI  R++ 
Sbjct: 62  EICRAVKAKQDAAIIFVTAQDMESDMLKGYECGADDYVTKPFSVAVFQKKVAAILSRIEK 121

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +           +            V  L  +E ++L+    ++ + + +  +   ++ 
Sbjct: 122 KSVSDVFEDGYLAIDFGENSCTAGQAVVALTPKEWKLLKIFAKSKKQVLTRQILLDRLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +    V+++ + + +S LRKK+ NK     + +   +GY 
Sbjct: 182 IDGNFVDDHTLTTTLSALRKKIENK-EHSYIQTIYGMGYM 220


>gi|307243687|ref|ZP_07525827.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492896|gb|EFM64909.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G ++      +       +   D++     +       L
Sbjct: 3   ILVVEDDQMIREGISEYLSEFGYTIIQAKDGKEALSKFDN---DINLAILDIQIPFVNGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P++ ++ +   +  +D F +  D  + KP     + ARV ++ ++   
Sbjct: 60  EVLKEIRKTSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNFG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   I V       ++ GE   +  +E  IL+YL+ N G+ + + QI   ++   
Sbjct: 120 RIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKET 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 215


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   NS      +      D   ++      G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVM--MPGMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++   S+   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAN 127

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++      I         D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 VDDVNNDATISYADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTQLIHTVRGVGYVL 229


>gi|123443239|ref|YP_001007213.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090200|emb|CAL13063.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D            G+ G S++                 D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYLSRALGESGFSVDISADGAEGLHYALEYDYDAIILDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   IRA  Q P++ +S   S+   +     G DD + KP    E    +  +      
Sbjct: 61  RVLEGIRASKQTPMLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRST 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPFEVKLLHTVRGMGYVLEV 223


>gi|118617161|ref|YP_905493.1| two component regulator receiver domain-containing protein
           [Mycobacterium ulcerans Agy99]
 gi|118569271|gb|ABL04022.1| two component regulator - receiver domain [Mycobacterium ulcerans
           Agy99]
          Length = 247

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       D G   +  +  E  E +    R D+  ++  L   G     
Sbjct: 30  LVVEDSETIREMVNEALADVGYHTDTRSDGEGLEEVLQGLRPDLVVLDVML--PGRDGFA 87

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR    + ++ I+    L   L   D G DD   KP    E+++RV A+ RR    
Sbjct: 88  LIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYAVKPFELAELVSRVGAVLRRRGRL 147

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + + S+       G    L   E R+L++L+  RG+ V+ TQI +A++G   
Sbjct: 148 PRVVQVGDLMLDSEAGVAARDGHQLDLTATELRLLDFLVQQRGRIVSATQILNAVWGYDA 207

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+V+ H+S LR+KL    G   V + R +GY +
Sbjct: 208 Y--DANLVQVHVSSLRRKLEAH-GPRIVQTVRGIGYRL 242


>gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 373

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 5/215 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G  ++  +S             D+  ++  L        
Sbjct: 6   ILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGL--PDFDGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S +P+I ++   +++  +     G DD + KP H  E+        +  + 
Sbjct: 64  DVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL--LARVKVQLRQR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G + +    R    +GE   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 122 TSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                 NVV+ H++ LR KLR+  G+  + + R +
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGV 215


>gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +   +    D+  ++  L       L
Sbjct: 3   ILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGL--PKLHGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA     P++ ++   S++  +   D G DD + KP   +E+ ARV A   R L
Sbjct: 61  EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP+   + GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             DE V  N +E +I +LRKK+    G   + + R LGY ++ 
Sbjct: 181 WGDE-VSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLEK 220


>gi|228471212|ref|ZP_04056025.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
 gi|228307027|gb|EEK16109.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + E    +       +  ++      G    
Sbjct: 8   LLIVDDEEDLREILTFNLASEGYQVSTAANAEEALKM-PLEEYHLLILDVM--MPGMNGF 64

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L  +IR   +   P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R 
Sbjct: 65  KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRF 124

Query: 120 KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S        I      +  D +   V GE+  L ++E  IL  L  + GK  ++ +I 
Sbjct: 125 LQSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFSREEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   D  V E  ++ HI+++RKKLR+      + ++   GY +
Sbjct: 185 DRVW-REDVFVLERTIDVHITRIRKKLRSGGIK--IINRSGFGYCL 227


>gi|39997243|ref|NP_953194.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39984133|gb|AAR35521.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +  +A   + G+ +    +         +    +  ++  L        
Sbjct: 5   ILLVEDDAGIAEVALAYLENAGLKVVHVTTGRDALDNSRAESPLLVVLDLML--PDLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R ++  + +P++ I+   S +  L  F  G DD V KP   RE++ARV A+ +R   
Sbjct: 63  AVCRELKETADIPVVIITAKASEEERLAGFALGADDYVVKPFSPRELVARVQAVLKRAGK 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +  +                    +G    L   E ++L  L A   K   + ++   
Sbjct: 123 NADGGKRLSFNRGELVVDDRNYTVTCRGTSVKLTAVEFKVLHTLAARPQKTFTREELVDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             G +     E  ++SHI  +R KL +       V +   LGY  
Sbjct: 183 AMG-YQFEGYERNIDSHIKNIRHKLSDSPKAPTYVITVYGLGYRF 226


>gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D     D       + G  ++          L      D+  ++  L    G  V
Sbjct: 3   ILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGWGV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R   +   +P++ ++    ++  +   + G DD + KP    E+LARV   + R  
Sbjct: 63  LQTVRR--SGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDPFEPKLIRTVRGMGYVLE 221


>gi|328544619|ref|YP_004304728.1| chemotaxis protein CheY [polymorphum gilvum SL003B-26A1]
 gi|326414361|gb|ADZ71424.1| CheY-like response regulator [Polymorphum gilvum SL003B-26A1]
          Length = 241

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G+      S         +A  D+  ++      GE  L
Sbjct: 8   ILIVDDHRDIRETLARYLVKNGLRASVAESAAHARKALKAAVIDLVVLDVM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +  +  +P+I ++        +   + G DD V KP + RE+LAR+ A+ RR   
Sbjct: 66  SLCRHLVDNGAIPVILLTAMAEETDRIIGLEIGADDYVTKPFNPRELLARIKAVLRRTAT 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
              + +                             PL   E ++L   +      + + Q
Sbjct: 126 VPRQRDALDGERLRFEGWLLDVPRRELEAPDGVAVPLSTGEFQLLAAFLKRPKMVLTRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G     V +  +++ +S+LR+K+  +      + +    GY  
Sbjct: 186 LLDLTTGRAPT-VFDRSIDNQVSRLRRKIEADPKDPKLIKTVWGGGYMF 233


>gi|299069457|emb|CBJ40724.1| putative two-component response regulator transcription regulator
           protein [Ralstonia solanacearum CMR15]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             ++G  +   +S E  +    +    +  ++  L   G+  +
Sbjct: 3   ILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEADASLLATC-QLIILDWML--PGKDGI 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q P++ ++   +    +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 60  ALCRELRERDLQTPVLMLTARDATADRIAGLDTGADDYLTKPFVFDELLARVRALLRRAR 119

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++          V   + R     G+   +  +E  ILEYLM + G+ V++ Q+   ++ 
Sbjct: 120 LAPAAPRVIGDLVLDPNARAVTRGGQALDVTPKEYAILEYLMRHAGQIVSRLQLAEHVWR 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A++ N+++ H+  LR+K+        + + R  G+ +
Sbjct: 180 ADLIAID-NLIDVHMKNLRRKVDPPGQPALIHTVRGQGFRL 219


>gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +    +G +++     +       +   D + ++  +    +  + 
Sbjct: 4   LVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMI--PNKDGIT 61

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R +  A  QVP++ ++     Q  +   D+G  D + KP    E++AR+  +   +  
Sbjct: 62  VLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQNP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ N    G + V  + R     G+V  L  RE  ILEYL  NR   V + QI   I+ +
Sbjct: 122 VNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWNI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D  V  NV++ +I  LR+K+ +      + + R +GY ++
Sbjct: 182 DD-DVNSNVIDVYIRYLRRKIDDNYEEKLIHTIRGVGYKLE 221


>gi|222106298|ref|YP_002547089.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737477|gb|ACM38373.1| two component response regulator [Agrobacterium vitis S4]
          Length = 241

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G+ +E        +    +   D+  ++  L   GE   
Sbjct: 7   ILIVEDDEQIAGMVRDSLNEQGMLVEVAADGAAMDAKMRALEFDLVVLDVML--PGEDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++   S    +   + G DD V KP   RE+ AR+  + RR +V
Sbjct: 65  SICRRLRGSGDIPILMLTSVSSDIDRVVGLEIGADDYVTKPFVLRELTARIKGLLRRSRV 124

Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ R ++     F               +       +   E  +L     N G+ + + Q
Sbjct: 125 TSQRPDSLRKSFFRFDGWQVDPARRQLHDPSHARVAMTTHEFDLLLAFCQNPGRVLTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + SA +      +E   ++ HIS+LR+K+  +      + + R  GY  
Sbjct: 185 LLSATHAGLAGPIE-RSIDVHISRLRQKIEKDPRDPALLKTVRLGGYVF 232


>gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 19/232 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++   A    +G    G  + E    +  +   D+  ++  L   G   
Sbjct: 6   LIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIML--PGMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IRA ++VP+I IS   S    +   + G DD + KP   RE++AR+     R  
Sbjct: 64  FELCRRIRAEAEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWY 123

Query: 121 VSNNRAETG------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             N                   +++  + R     GE   +  +E  +L     +  +  
Sbjct: 124 KFNRAENVPRLAAASPELSNGRLQLQLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++ ++++G  D    +  V+  I +LRKK+        +++    GY +
Sbjct: 184 TRDELLTSVWG-DDYFGSDRAVDHLIKRLRKKVEQLP----IEAIWGHGYRM 230


>gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
 gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    L    + D+  I+          +
Sbjct: 4   ILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVM--MPRLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +   + G DD + KP +  E+ ARV +  RR   
Sbjct: 62  RATLKIREKQNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRRYTQ 121

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  E             +  D ++  V GE   L   E  IL  L+ N+GK  +  QI
Sbjct: 122 LGSTVEKENQAVYTVGGLMIDDDQKEITVDGEPVKLTPIEYNILLLLVKNQGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + +I+      V+ N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YESIWNEDAIGVD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
 gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 263

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  +   ++         S   D+  ++  L   G+  +
Sbjct: 34  ILLVEDDPALRLLTARALRAHGYDVGTASTGAEMWVALESGAVDLIVLDIML--PGQTGI 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S VP+I IS   S    +   + G DD + KP   RE++AR+ A+ RR + 
Sbjct: 92  ELFRRLRRDSDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLRRGQA 151

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
            + R   G    F   R    + E+             E  +L   +    + + + ++ 
Sbjct: 152 EDERPARGRDLEFDGWRLSLGRHELRSPQGALVDLTGAEFDLLATFLNQPQRVIGRQRLI 211

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +         +  ++  +S+LR+KL    G  P+ + R +GY  
Sbjct: 212 E-LSRTRQSDSSDRSIDVLVSRLRRKLTGPSGNAPIVTVRGVGYMF 256


>gi|291561248|emb|CBL40047.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 221

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +   ++D   + +  +    + G  +EGF             + D++ ++  L    G +
Sbjct: 3   LIYAVEDDKNILEIEMFALKNSGYQVEGFECARDFYKKLEEKQPDLALLDIMLPDEDGLE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   R      ++P+I ++   +    +   D G DD + KP    E++ARV A+ RR 
Sbjct: 63  IVAKLRRRPETKKLPIIMVTAKSTEIDKVKGLDVGADDYLTKPFGVMELIARVKAVLRRT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G I +  +     V+     L  +E  +L+ L+ N G  V +  I   ++G
Sbjct: 123 MEEDKFLTLGDIFLDDEKHMVYVKDVPCSLTFKEYELLKLLLHNAGIVVTREIILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   E   ++ HI  LR+KL        + + R +GY I+
Sbjct: 183 I-DFEGESRTLDMHIRTLRQKLGEAGS--MIRTVRNVGYMIE 221


>gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +   +       +      D+  ++           
Sbjct: 4   ILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   
Sbjct: 62  STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + R      +     V   GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 122 KDVRDGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LR  L        + + R +GY  +
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 223


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 24  LIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVML--PDMDGLT 81

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 82  VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 141

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E+  +        D  +     +   L   E  +L +LM N  + ++K QI   +
Sbjct: 142 AVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 202 W-NYDFGGQANVVELYISYLRKKI-DAGRSPMIHTRRGAGYLI 242


>gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      ++  ++  L        
Sbjct: 3   LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYELVILDVNL--PELDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ +       
Sbjct: 61  TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221


>gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
 gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             ++G +++            ++ + DV  ++  L       L
Sbjct: 3   LLVVEDDTTTSTYIARGLREEGHAVDVVADGRDGLVQATTGQYDVLILDRML--PELDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   +++  +D  ++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRPQ 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 ALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY I+
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDRPFDVELIQTVRGAGYRIE 222


>gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
 gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAVNS---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSH 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   +R++   ++     ++  L   E  +L + + N G  + K  +  
Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +                                  +  ++  L   G   +
Sbjct: 5   ILIVEDESRLSSLLADYLRQANFEPHILADGLPVVSWVRDNHPSLILLDLML--PGRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 63  EICKEIRGFSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +N    G            + G    L   E ++L++L A+ G+  ++ Q+   IY   
Sbjct: 123 QSNLHSQGLTLE-EASLHANLNGCKLDLTAVEFKLLQHLAAHPGRIFSREQLMDRIY-AD 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SHI KLRKK+     G D + S   +GY  +
Sbjct: 181 RRIVSDRTIDSHIKKLRKKMDTASPGVDLIRSVYGVGYKFE 221


>gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSN 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   +R++   ++     ++  L   E  +L + + N G  + K  +  
Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400]
 gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 241

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   + +P++ ++        +   + G DD + KP + RE        +  ++
Sbjct: 66  SICRRLRQQENPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQI 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +           E G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 AEVPGAPAQQEEMIEFGEFSLNLATREMFHGDESIALTSGEFAVLKVLVNHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +  +    +    ++     +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRML--PGMDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + + +RA     P++ +S    +   ++    G DD + KP    E    +  +    R+
Sbjct: 62  IIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNRQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R  +  G+   +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 SAETETVLRVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTIRGAGYML 222


>gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +              +   N+      + SS   +   ++A L   G    
Sbjct: 3   ILVVEDDRKMALVLRDALEKQSHRIVLANTGLEGLDIASSHEFESIILDAML--PGMDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++   +    +   DSGVDD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVARSLRDAKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTL 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + + +                  G    L R E  +LE++M N    + +  I +A++G
Sbjct: 121 ATASLSYQLEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  VE N +++ + +LR K+    G   + + R  GY +
Sbjct: 181 -YEHTVENNTLDAFMKQLRSKVDEGHGNKLIHTVRGFGYKL 220


>gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   +S        +  + DV  ++  L       ++
Sbjct: 5   LVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGL--PDISGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        ++  D+G DD V KP    E      A V      
Sbjct: 63  VLAGLRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     ET    V    +     G    L   E  +LE L+ NRGK V + ++   ++
Sbjct: 123 SELEQPVIETDTFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           G    A E + +  ++++LR+KL +       + ++  +GY  + 
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFEE 226


>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++        +G  +      +           +V  ++  L        
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE-PNVLILDVML--PDTDGY 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           EL R+ R     +P++ ++    +   L     G DD V KP ++     R        +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVM 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   +     G + ++   R   V GE   L  RE  + +   +N+ +   + ++  
Sbjct: 120 KHGVPKDDKVIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASNKQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+ +     V+  + +LRKKL        + +   +GY +D
Sbjct: 180 KVWG-FEYSGNTRAVDIMVQRLRKKLGASGEH--IKTIYGVGYKLD 222


>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|218247139|ref|YP_002372510.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060210|ref|YP_003138098.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167617|gb|ACK66354.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590376|gb|ACV01263.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   ++   +      L      D+  ++  L    E   
Sbjct: 10  ILIVDDDPAICQLVSRFLSYNNYQIKTAENAYQGRQLFEQLSPDLVILDVNL--PDESGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAA 114
            L + IR    + ++ ++        L+ F  G DD + KP +          +L R   
Sbjct: 68  TLCQEIRHTGTL-VLMLTCMTDTNYILEGFAKGADDYLTKPFNLAILKAKITALLNRRQL 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L+   N      + +  +  +  +  +V PL   E  +L +L  +  K   +  + 
Sbjct: 127 GNNTLETGKNTLVFDGLSINVETAEVTLNNQVIPLTTLEFELLHFLATHPNKIWERGALI 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++    E   +  V+ HI ++RKK+ +  G   + + R  GY  
Sbjct: 187 EQVWRENQEIGADRKVDVHIGQIRKKIDDLEG-RLIKTVRGRGYMF 231


>gi|152983691|ref|YP_001348856.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958849|gb|ABR80874.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +     +     G  +   +  +         + ++  ++  L   G+  L+
Sbjct: 10  LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFGAFLDFKPELVVLDLML--PGQNGLQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R IR    +P++ ++        +   +SG DD V KPI        L  +   +  L
Sbjct: 68  VCREIRRVDNLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALIRRHAPL 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G + V    R+ E+ G    L   E  +L  L +  G+ +++ +I + I G
Sbjct: 128 PASPETLAFGQLNVDRRRREAELDGRSIELTTMEFELLWLLASQAGEILSRDEILNQIRG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +         V+  ISKLR KL++       + +    GY  +
Sbjct: 188 IG-FDGLNRSVDVCISKLRSKLKDNPREPVRIKTVWGKGYLFN 229


>gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces
           bikiniensis]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 19/229 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  +++          G  +           L    R D+  ++  L   G   + 
Sbjct: 4   LLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELFREGRHDLVLLDVML--PGLDGIG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  +  P++ +S        +   ++G DD V KP+    ++AR+ ++ RR    
Sbjct: 62  LCRRIRETATDPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRAAFV 121

Query: 123 NNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                           +    GE   L   E R+L    A+ G  + +
Sbjct: 122 SPAPGPADPATPAGPLLFGDLSLDPAALEVRRGGERIALAPTELRLLLQFAAHPGIVLDR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +   ++  +    +  VV+  + +LRKK+    G + V++ R  GY 
Sbjct: 182 QTLLREVWD-YGWDGDTRVVDLCVQRLRKKI----GAERVETVRGFGYK 225


>gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +     + E    L +    D+  ++  L     +  
Sbjct: 5   ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGL--PDTEGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           EL + +R     P+I ++        +   + G DD +             +      + 
Sbjct: 63  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++           +       QG   PL + E R+L  L+   G+  ++ ++ +A++G
Sbjct: 123 RPASEAESAPVWHDDAPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMFG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +   + + + +HI  LR KLR      +P+ +   LGYS + 
Sbjct: 183 -GNRPSDPHTINTHIRALRHKLRAAGVAGEPIRTHHGLGYSFNE 225


>gi|290969322|ref|ZP_06560847.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780828|gb|EFD93431.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  L++         +G  L      +           D+  ++      G    
Sbjct: 4   ILIADDEQLMRRLVHDFLLPEGYELMEAADGKAALAAYEQYHPDLILLDVM--MPGYDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L  +D GVD+ V KP   + ++A++ A++RR K 
Sbjct: 62  TVCREIRRESAVPIIMLTAKGEEIDQLFAYDLGVDEYVTKPFSPKILVAKIKAVFRRSKH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   + +  D R   + G+   L   E ++L YLM+N GK +++ QI + ++  +
Sbjct: 122 AA-EGEACGVCLDKDARQVVLDGKNVDLSPTEYKLLNYLMSNTGKALSRRQILNQVW-NY 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   V++HI++LR KL  K   + + + R  GY  +
Sbjct: 180 DYYGDLRTVDTHINRLRIKLGIKG--EYIQTVRGYGYRYN 217


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGKPIDLSPTEYKLLCYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDITVEDEDGTTHKVQPLIETKRGIGYMI 238


>gi|254976959|ref|ZP_05273431.1| two-component system, response regulator [Clostridium difficile
           QCD-66c26]
 gi|255651878|ref|ZP_05398780.1| two-component system, response regulator [Clostridium difficile
           QCD-37x79]
 gi|260687162|ref|YP_003218296.1| two-component system, response regulator [Clostridium difficile
           R20291]
 gi|306520362|ref|ZP_07406709.1| two-component system, response regulator [Clostridium difficile
           QCD-32g58]
 gi|260213179|emb|CBE04640.1| two-component system, response regulator [Clostridium difficile
           R20291]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEKFEYNDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EETPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|52142651|ref|YP_084178.1| response regulator [Bacillus cereus E33L]
 gi|51976120|gb|AAU17670.1| response regulator [Bacillus cereus E33L]
          Length = 215

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 93/220 (42%), Gaps = 11/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A F      +      E    +    + D++ ++          + 
Sbjct: 4   LIADDEQDMLRILKAYFEKADFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R     ++L   
Sbjct: 62  VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  +   +++           +   + + E  +++  + ++G  + + ++   ++G FD
Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              EE  V++H+ +LRKK+      + + + R LGYS++ 
Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +   ++ +            +  I+          L
Sbjct: 5   ILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIM--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S VP++ IS        +   + G DD + KP    E+ AR+ +  RR + 
Sbjct: 63  TLCKNIRLTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRR 122

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       I        ++ +G+  EV G    L  +E  +L  +  N  K   K++++
Sbjct: 123 YNGIENNEHILKFKRGLIIYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G  D     N V  HI +LR+KL  N    + +++   +GY  
Sbjct: 183 EILWGEKDVHGN-NTVTVHIKELREKLKENIKNPNFIETVWGVGYKF 228


>gi|110634491|ref|YP_674699.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285475|gb|ABG63534.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 240

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    +        +    D+  ++      GE  +
Sbjct: 21  LLVVDDDTRIRTLLKRFLTEEGFRVTVAANAAEARRKLAGLDFDLLVLDVM--MPGEDGV 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R +R    VP++ ++     ++ +    +G DD + KP   R     +   +    +
Sbjct: 79  GLTRSLRQERDVPILMLTALSETESRVTGLQAGADDYLPKPFDPRELVLRVNNILRRGGQ 138

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       R+ +  GE+  L  RER I+       G+ + + ++    
Sbjct: 139 PTTPKLEQIVFGPYTFQITRRELKRAGELLKLTEREREIMAIFAERAGETIPRHELV--- 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 196 --GEDSEVGERTIDVQINRLRRKIERDPANPIWLQTVRGIGYRL 237


>gi|332186443|ref|ZP_08388187.1| response regulator [Sphingomonas sp. S17]
 gi|332013426|gb|EGI55487.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + + ++D      G        G  +E               + D   ++          
Sbjct: 5   LIL-VEDDRDYAAGLADDLTRLGHRVEHVGDGRQALAALDREQFDAVILDRM--MPRLDG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
           L +   +R     VP+I ++        +D  ++G DD V KP+   E+ AR+       
Sbjct: 62  LSVVETLRERGLTVPVIMLTALSMASDKVDGLEAGADDYVVKPVAAEELNARINAVLRGR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     ++    G I V          G+   L   E ++L  L  + G+ + +  +   
Sbjct: 122 RWTVGESDTIRAGDIVVSPTSFRAWRAGQPIALANLELKLLTELARHAGEVLTRAMLIER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++   E NVV+ +I +LR KL    G DP+++ R +GYS+
Sbjct: 182 VWG-YEFEPETNVVDVYIRRLRVKLTEAGGSDPIETVRGIGYSL 224


>gi|311070491|ref|YP_003975414.1| two-component response regulator YxdK [Bacillus atrophaeus 1942]
 gi|310871008|gb|ADP34483.1| two-component response regulator (YxdK) [Bacillus atrophaeus 1942]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++          G      +       L    + DV  ++  L         
Sbjct: 5   MIVEDSKDIRSLLQNYLEKYGYQTVVTSDFTSVLDLFLREKPDVVLLDINL--PSYDGYY 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
             R IR HS  P+I IS        +   ++G DD + KP  +  +        R A   
Sbjct: 63  WCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGE 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K      E   +++F +  +   Q +   L ++E ++LE L+    K   + ++   
Sbjct: 123 YAAKQGEKVLEYEGVQLFVERFELRYQDQKCELSKKESKLLEVLLERGEKVTGRDRLMEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   D  V++N +  +I++LRKKLR+      ++S R  GY +
Sbjct: 183 TWDT-DIFVDDNTLNVYITRLRKKLRDLHVPISIESVRGEGYQL 225


>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 242

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|28869425|ref|NP_792044.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852666|gb|AAO55739.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 4   LIVDDDVAIRELLCDYLTRFNINARGVTDGSQMRQALTDETFDVVVLDLML--PGEDGLS 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 62  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 121

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   T              +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 122 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 182 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 225


>gi|68347297|gb|AAY94903.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +        Q ++  D+  ++  L        
Sbjct: 7   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGL--PDISGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 65  ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 124

Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +  +      +G+   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 125 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 183

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             +   E  ++SHI  LR KLR      +P+ + R LGY
Sbjct: 184 MADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 222


>gi|28378254|ref|NP_785146.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254556461|ref|YP_003062878.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308180403|ref|YP_003924531.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271089|emb|CAD63994.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254045388|gb|ACT62181.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308045894|gb|ADN98437.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDIQVEYNGRKGLDAALAEDFDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+      
Sbjct: 62  EVCRRVREVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDL 121

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  +    +   EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ESEQQSTKQTTVTYKDLTIEKENLVVKRGDEVINLTKREYELLLTLMENINVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 NKVWG-YESEVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ]
 gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++          G  +           L + AR D+  ++  L        
Sbjct: 8   ILVIDDEAQIRKFLRISLVAHGYRVLEAGCGREGLTLAAEARPDLLVLDLGL--PDMDGK 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           EL   +R  SQVP++ +S        +   D G +D V KP   RE    +  +      
Sbjct: 66  ELLAELRRDSQVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPAS 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+ V  D R  ++ G    L R+E  +L  L  + G+ V + Q+   I+
Sbjct: 126 PGQGPGTLNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 186 GPTHVE-DSHYLRVVVGHLRQKLGDDPADPRFIVTEAGIGYRL 227


>gi|328542823|ref|YP_004302932.1| transcription regulator protein [polymorphum gilvum SL003B-26A1]
 gi|326412569|gb|ADZ69632.1| Putative transcription regulator protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD + ++D    +  D G  +    +        +    D+  ++      GE  L
Sbjct: 14  LLLVDDDSRIRDLLSRVLRDSGYRVTSAANAAEARRCMAGLEFDLLILDVM--MPGETGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           +L R IR  + VP++ ++        +   + G DD + KP   RE++ R+        +
Sbjct: 72  DLARTIRRENTVPILMLTARSDAADRIAGLEVGADDYLAKPFEPRELMLRIAAILRRGGQ 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R          GP    ++  +         L  RE++IL       G  V + +I    
Sbjct: 132 RRTERTPEIRFGPFVFIAERGELRRGEASIRLTDREKQILSIFAEQPGATVPRHKIV--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  + E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 189 --GDDSGLGERTVDVQINRLRRKIETDPSNPVFLQTVRGIGYRL 230


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      ++  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR +    P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +   + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-----NKLGF-----DPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      +  G        +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238


>gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 236

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G +++     E  +   S     +  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLML--PGEDGL 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + +P+I ++        ++  D+G DD + KP + +E+ AR+ A+ RR  
Sbjct: 66  SICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHV 125

Query: 121 VSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP  +    R     G+   L   E  +L+ L+ N  + + + +
Sbjct: 126 RELPGAPSKEEGSVTFGPWILDLANRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + S   G  + +  E  ++  +S+LR+ L +       + +   +GY  
Sbjct: 186 LMSLARGR-EWSAMERSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVF 233


>gi|168212632|ref|ZP_02638257.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715801|gb|EDT27983.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G ++   ++      +       ++ ++           
Sbjct: 6   ILVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIM--MPKMDGA 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR   
Sbjct: 64  TMVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSK 123

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  
Sbjct: 124 YLNMVKKDEKKTNSYAIGGLEVNIDRKEVMLDGDVVKVTPIEFKILQLLIKSPGRVFSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 EIYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|126698685|ref|YP_001087582.1| two-component response regulator [Clostridium difficile 630]
 gi|115250122|emb|CAJ67943.1| Two-component response regulator, Tn1549-like,CTn4-Orf26
           [Clostridium difficile]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  +  N+ +            +  ++      G    E
Sbjct: 5   LIIDDDKELCALIKRSVLSEDIEADFCNTGKEGLQKLKEREYQLVILDIM--MPGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIY 116
               IR  + +P++  +      + +    +G DD + KP    E++       R    +
Sbjct: 63  TLEEIRKENSLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIISLIRRYTRF 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    + + E   +++  + R    +   F LP +E  +L Y   N+GK + K QI+  
Sbjct: 123 NQQDGISQQLEFDGLKIDIENRSVTTENGTFELPPKEFDLLLYCAKNQGKILTKQQIYEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++   +   +++ + + IS+LRKKL  N      + + + +GY  + 
Sbjct: 183 VW-REEYFYDDSNIMAIISRLRKKLEVNPGSPKYIQTIKGIGYRFNK 228


>gi|315604746|ref|ZP_07879809.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313758|gb|EFU61812.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   E +++           R  +  ++  L        
Sbjct: 4   ILIVEDERRIASFVAKGLRAAGFVPEVYSTGAEAVEAALQGRGALMLLDVGL--PDIDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR    ++P+I ++   S+   +   + G DD V KP    E+LARV    R   
Sbjct: 62  EVLEQIRGQGVEMPVIMLTARTSVSDRVAGLEGGADDYVPKPFSFEELLARVRLRLREEA 121

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R   V      L  RE  +LE  M N G+ +++ Q+ SA++
Sbjct: 122 PVPGGLTLTRGSLVLDLKSRRVRVGERSVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D     NVV+ ++S LR+K+    G D  ++ R +GY +
Sbjct: 182 GI-DFDGGSNVVDVYLSYLRQKI----GKDRFETVRGMGYRL 218


>gi|297624289|ref|YP_003705723.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165469|gb|ADI15180.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 236

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++      G +G  +    S      L +    DV  ++  L   G    
Sbjct: 16  LLLVEDDPGIRESLELGLGFEGFEVVTAASASEGLRLFAQEAIDVVILDILL--PGSDGY 73

Query: 62  ELPRIIRAHSQVPL----IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            +   IR           + ++   +++  +     G DD + KP    E++AR+ A++R
Sbjct: 74  RVLEAIRTPHNPKREVAVLFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWR 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           RL+          +R++ D R+    G    L  +E  +L+ L+ +R + V++  +   +
Sbjct: 134 RLQRPVTALCAADVRLYPDKREAWRGGVPLELAPKEFALLQVLLEHRARVVSREALMQRL 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G     V+ N +E H+S LR+ L +      + + R  GY +D 
Sbjct: 194 WGER---VDPNTLEVHVSSLRRALGD---PPMIRTVRGYGYLLDE 232


>gi|192361331|ref|YP_001982329.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190687496|gb|ACE85174.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +           + +    D+  ++  L       +
Sbjct: 4   ILIIDDEPQIRRFLHIGLSAQGYKVAEAEVGRQGLSMAADNPPDLIILDLGL--PDLDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            + + +R     P+I +S        +   D+G +D V KP   +E    +  +   +  
Sbjct: 62  VVLKKLRDFYHAPIIILSVRNRETEIVQALDAGANDYVVKPFGIQELLARIRGLIKAFGP 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    +   I +    R  +V GE+  L R+E  +L+ L+ N G+ V + Q+   I+
Sbjct: 122 ADQSVREFQDERIHIDLQERKLKVDGEIVKLSRKEFELLKRLINNAGRLVTQQQLLREIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   I++LR KL +       ++++  +GY  
Sbjct: 182 GGTHVE-DTHYLRIFIARLRTKLGDDPSNPRYIETEPGVGYRF 223


>gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116]
 gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  ++          +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINSE-IDLILLDVM--MPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   I+++   ++      +  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKSSKNSDCIEYQEIKLYPGKQEAYCDNALMDLTTTEFALLTHFVQNPGQVLTKEALSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
 gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      +          +   D+  ++  L   G+  L
Sbjct: 4   ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLML--PGKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+  S + +I ++        L   + G DD + KP   RE++ARV  I RR+  
Sbjct: 62  TICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINP 121

Query: 122 SNNRAETGPIRVFSDG---------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    I   S               +      L   E  +L  L +  G+  +++Q
Sbjct: 122 PLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   +Y   +  V E  ++SHI KLRKKL   +   + V S   +GY +
Sbjct: 182 LIDRVY-QDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229


>gi|299536072|ref|ZP_07049389.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298728496|gb|EFI69054.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G++ +   N++E  +   ++   D   ++  L       
Sbjct: 6   ILVLEDERAIAEMIEIILRKEGINNITLCNTIEEAKDEMNTKTFDFYLLDIML--PDGSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           L++   IR  S  P+  ++   S    L  F +G DD + KP +      R  +  V  +
Sbjct: 64  LDMANSIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLVRYM 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++    N+           D  + EV G    +  R   +L+YL  N G+ ++K QI+ 
Sbjct: 124 KKKSVPENHIFTCSRFTFDIDAAEIEVDGVKEIISGRLFHLLKYLCDNAGQVLSKEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D   ++N V  HI KLR+K+  N      + + R +GY +
Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      + S  + D+  ++  L        
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML--PDIDGF 71

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 72  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 192 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 243


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V+G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|288956905|ref|YP_003447246.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909213|dbj|BAI70702.1| two-component response regulator [Azospirillum sp. B510]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L+DD   +          +G  +  +          S    D++ ++          +EL
Sbjct: 7   LVDDDRNILASVSIALEAEGFDVRTYTDGAEALRGLSQRPPDLAVLDI--KMPRMDGMEL 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------AI 115
            + +R  SQ+P+I ++        L     G DD + KP   R ++ R+           
Sbjct: 65  LQRLRQTSQMPVIFLTSKDDELDELMGLRMGADDYIKKPFSQRLLIERIRALLRREALRG 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+ +         +G++  L   E  ++  L    G    + Q+  
Sbjct: 125 ETAEADPGQIITRGPLLLDGARHACNWKGQLIDLTVTEFLLVRALAQRPGHVKNRDQLMD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           A YG     V++  ++SHI +LRKK +     F  +++   +GY 
Sbjct: 185 AAYGEHVY-VDDRTIDSHIKRLRKKFKAVDPDFSQIETLYGVGYR 228


>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD + V           G  +             +  R D   ++  +    G  V+
Sbjct: 1   MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
              R +   + VP+  +S   S+   +   ++G DD + KP         + A +     
Sbjct: 61  TALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGA 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+     GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   +
Sbjct: 119 TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D A + NVV+  I  LR+KL    G   + + R +G+ +
Sbjct: 179 WG-YDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVL 220


>gi|167746479|ref|ZP_02418606.1| hypothetical protein ANACAC_01189 [Anaerostipes caccae DSM 14662]
 gi|167653439|gb|EDR97568.1| hypothetical protein ANACAC_01189 [Anaerostipes caccae DSM 14662]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++ G       +G  +     ++    L +++  D+   +  L       L
Sbjct: 6   ILLLEDDESLRRGICFKLEKEGYEVLACAGIQEGMRLWNNSEIDLVICDITLE--DGSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S V  + ++        +  +++G DD V KP     +++++ A++ R+ V
Sbjct: 64  DFCREIRRISNVRFMFLTAMDQEIDIVMGYEAGADDYVVKPFSLAVLISKIHAVFARMDV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E+G + V        V GE   L + E ++L   +++  +  +K Q+   ++ + 
Sbjct: 124 KEEKIESGKVCVHKTEMKVMVSGEERSLTKNEWKLLLLFISHPRQVFSKGQLLEQMFDMD 183

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            E  +EN V  +I +LR+K+  +    + + + R +GY  D 
Sbjct: 184 GEFADENTVAVNIRRLREKIEPDPSKPEYIKNIRGIGYLWDK 225


>gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R      P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V  +   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSRDKVVIGPIVVDRGLHVVTVSEKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR+   G   + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGESVIKTIWGVGYKIE 230


>gi|29376397|ref|NP_815551.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|69243908|ref|ZP_00602486.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|126699488|ref|YP_001088385.1| two-component system response regulator [Clostridium difficile 630]
 gi|227519207|ref|ZP_03949256.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553677|ref|ZP_03983726.1| response regulator [Enterococcus faecalis HH22]
 gi|229545549|ref|ZP_04434274.1| response regulator [Enterococcus faecalis TX1322]
 gi|255975586|ref|ZP_05426172.1| two-component system [Enterococcus faecalis T2]
 gi|256619346|ref|ZP_05476192.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256853387|ref|ZP_05558757.1| two-component system [Enterococcus faecalis T8]
 gi|256961640|ref|ZP_05565811.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256964854|ref|ZP_05569025.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257090159|ref|ZP_05584520.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257880523|ref|ZP_05660176.1| two-component system response regulator [Enterococcus faecium
           1,230,933]
 gi|257883531|ref|ZP_05663184.1| two-component system response regulator [Enterococcus faecium
           1,231,502]
 gi|257891929|ref|ZP_05671582.1| two-component system response regulator [Enterococcus faecium
           1,231,410]
 gi|257894764|ref|ZP_05674417.1| two-component system response regulator [Enterococcus faecium
           1,231,408]
 gi|258616835|ref|ZP_05714605.1| two-component system, response regulator [Enterococcus faecium DO]
 gi|260558207|ref|ZP_05830404.1| two-component system [Enterococcus faecium C68]
 gi|261206583|ref|ZP_05921282.1| two-component system [Enterococcus faecium TC 6]
 gi|293382632|ref|ZP_06628562.1| DNA-binding response regulator VncR [Enterococcus faecalis R712]
 gi|293386651|ref|ZP_06631226.1| DNA-binding response regulator VncR [Enterococcus faecalis S613]
 gi|294614552|ref|ZP_06694459.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|294617616|ref|ZP_06697245.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|294621925|ref|ZP_06701075.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|307272940|ref|ZP_07554187.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275695|ref|ZP_07556835.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307277788|ref|ZP_07558873.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307291718|ref|ZP_07571590.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312904764|ref|ZP_07763912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312908420|ref|ZP_07767383.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312978981|ref|ZP_07790703.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|314996395|ref|ZP_07861440.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|29343860|gb|AAO81621.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934006|gb|AAS49400.1| response regulator [Enterococcus faecalis]
 gi|68196634|gb|EAN11059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|115250925|emb|CAJ68751.1| Two-component response regulator; Tn1549-like,CTn5-Orf36
           [Clostridium difficile]
 gi|227073346|gb|EEI11309.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177188|gb|EEI58160.1| response regulator [Enterococcus faecalis HH22]
 gi|229309334|gb|EEN75321.1| response regulator [Enterococcus faecalis TX1322]
 gi|255968458|gb|EET99080.1| two-component system [Enterococcus faecalis T2]
 gi|256598873|gb|EEU18049.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256711846|gb|EEU26884.1| two-component system [Enterococcus faecalis T8]
 gi|256952136|gb|EEU68768.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256955350|gb|EEU71982.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256998971|gb|EEU85491.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257814751|gb|EEV43509.1| two-component system response regulator [Enterococcus faecium
           1,230,933]
 gi|257819189|gb|EEV46517.1| two-component system response regulator [Enterococcus faecium
           1,231,502]
 gi|257828289|gb|EEV54915.1| two-component system response regulator [Enterococcus faecium
           1,231,410]
 gi|257831143|gb|EEV57750.1| two-component system response regulator [Enterococcus faecium
           1,231,408]
 gi|260075789|gb|EEW64094.1| two-component system [Enterococcus faecium C68]
 gi|260079200|gb|EEW66892.1| two-component system [Enterococcus faecium TC 6]
 gi|291079992|gb|EFE17356.1| DNA-binding response regulator VncR [Enterococcus faecalis R712]
 gi|291083903|gb|EFE20866.1| DNA-binding response regulator VncR [Enterococcus faecalis S613]
 gi|291592586|gb|EFF24188.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|291596125|gb|EFF27389.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291598499|gb|EFF29566.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|306497170|gb|EFM66715.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306505528|gb|EFM74713.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306507571|gb|EFM76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306510554|gb|EFM79577.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|309386143|gb|ADO67011.1| DNA-binding response regulator [Enterococcus faecium]
 gi|310625640|gb|EFQ08923.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631917|gb|EFQ15200.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311288220|gb|EFQ66776.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|313589447|gb|EFR68292.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|315029020|gb|EFT40952.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315033219|gb|EFT45151.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315144701|gb|EFT88717.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315161471|gb|EFU05488.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315574447|gb|EFU86638.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315577928|gb|EFU90119.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315580786|gb|EFU92977.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323481010|gb|ADX80449.1| response regulator [Enterococcus faecalis 62]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EETPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|328885480|emb|CCA58719.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 19/234 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL----QSSAREDVSAIEAFLIGKG 57
            +L++D   V     A+    G ++    + E             R     I   L    
Sbjct: 3   LLLVEDDDHVAAALSAILARHGFTVTHARNGEEALQAVLPTAQGERPSYGVILLDLGLPD 62

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   ++   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 63  QDGYQVCGRIRKLTTTPVIMVTARGDVRSRIHGLNLGADDYVVKPYDPGELLARIHAVSR 122

Query: 118 RL-----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           R                 +   GP+ +    R   V GE  PL R+E  +L  L    G 
Sbjct: 123 RHAGTEETAATGTATDGTQLRLGPVTIELPTRRVSVDGESVPLTRKEFDLLALLAQRPGV 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + QI S ++           +E H++ LR KLR       +++ R +GY +
Sbjct: 183 VFRREQIISEVW-RTSWEGTGRTLEVHVASLRSKLR---MPALIETVRGVGYRL 232


>gi|312792374|ref|YP_004025297.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179514|gb|ADQ39684.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 221

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         ++G ++   NS   ++ L+     D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNVI--NSYTAKDALEKLNDADLIILDIML--PDMEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR + 
Sbjct: 60  EVLKE-ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLGGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D  +     +G  +  F++ +       +   D+  ++  +   G   L
Sbjct: 4   ILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMR--GMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  S+VP+I +S        +   + G DD + KP   RE++ R+  I RR   
Sbjct: 62  DLCKKVRMTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRTNA 121

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + E        +++F + R  +V  E   L  +E  +L+YL+ N+G  +++ +I   
Sbjct: 122 VVQKKEDNVLSVEDLKIFIEQRIVKVGEEEVALTTKEYEVLKYLVENKGYPLSRDKIIQN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+G ++    +  V+  I +LRKKL++      + +    GY 
Sbjct: 182 IWG-YEYDGYDRNVDDTIKRLRKKLKDIESKVKIQTVWGYGYK 223


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIML--PKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           E+ + +R +    P++ ++   +++  +   D G DD + KP    E +    A + R+ 
Sbjct: 61  EVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGYVL 220


>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 241

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +  G       +G  +      E    L  +   D+  I+  L        E
Sbjct: 20  LLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVML--PRLNGFE 77

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           L RI+      +P+I +S   +    +   + G +D + KP    E    +  V      
Sbjct: 78  LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +   G I + +  R+      +  L   E  +L  L    G+ +++ QI + ++
Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G          +++ I +LR KL         + + R +GY  
Sbjct: 198 GPTHH-GTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRF 239


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G S+  F S         +   ++  ++  L        
Sbjct: 7   LMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIML--PDMDGY 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +R     V ++ ++     +  L  F++G DD + KP  + E+LAR+ A + R+ 
Sbjct: 65  EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G + ++ + R     G+   L + E  +L YL  N+ + V+K +I  A++G
Sbjct: 125 ISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D    +N VE +++ +RKKL      + + + R +GY +
Sbjct: 185 I-DYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220


>gi|209524178|ref|ZP_03272728.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495269|gb|EDZ95574.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+   L+ +       + G      ++        +  +  +  I+  L   GE  L
Sbjct: 12  ILIIESDQLLAENISVDLQESGYFPVVAHNTAIGLHQVTELQPALIVIDRMLG--GESGL 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++      ++   +   +SG DD   KP    E L  V    +   
Sbjct: 70  SLCRHLREMGCTAPILIFMARDTVDDRVACLESGADDYFLKPYRCEEFLDLVKLYLKSED 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++      + +    R          L  +E  +L+YLM +  + + + QI   ++G 
Sbjct: 130 NHSDMLRFADLVLDLATRRAIRNHRAIDLTMKEFDLLKYLMEHPREVLTREQILENVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E NV+E +I  LR K+  +     + + R +GY +
Sbjct: 189 YDFLGESNVIEVYIRYLRLKIEEEGEKRLIQTVRGVGYVL 228


>gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9]
 gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum SS9]
          Length = 261

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 26/242 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D            +         E        D+  ++  L   G+  L
Sbjct: 16  LLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEMEQCLRDNSIDLIVLDLML--PGKDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------------- 107
            L R +R HS +P+I ++        +   + G DD + KP + RE              
Sbjct: 74  TLCRELRVHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRRFNA 133

Query: 108 -------ILARVAAIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEY 159
                    ++V ++       +                  +  G    L   E  +L+ 
Sbjct: 134 IPEGKSVRQSKVDSVEEAQDKESYVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKV 193

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + +  K +++ Q+     G  +  V +  +++ IS+LRKKL  +    + + +    GY
Sbjct: 194 FVEHPRKVLSREQLLDLAKGR-ETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGGGY 252

Query: 219 SI 220
            +
Sbjct: 253 QL 254


>gi|254293636|ref|YP_003059659.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042167|gb|ACT58962.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLGRQLKTSLSEAGYAVDLAVDGEDGHYLGETEPYDAVILDLGL--PKMDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  +       +P++ ++        +  FD+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  RVLEKWRAEGKVMPVLILTARDRWSEKVAGFDAGADDYLTKPFITEELLARLRALLRRSA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +RV +      V G+   L   E R+L Y+M  +G+ V +T++   IY 
Sbjct: 121 GHASSALELGDLRVDTSSARATVGGQPIKLTAHEYRVLSYMMHYQGRVVPRTELVEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D + ++R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GSDRILTERGLGYRL 216


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E  NS      +    R D   ++      G    E
Sbjct: 11  LVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVM--MPGMDGFE 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR  V
Sbjct: 69  LLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 128

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +      +R        D  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 129 TADADSDSTLRYADLTLNDDTHEVTKSGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 189 VW-HYDFGGDGNVVESYISYLRRKV-DTGDVPLIHTVRGVGYVL 230


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V          +G                SS   D   ++  L         
Sbjct: 4   LLVEDDPKVASHIANGLLGEGHECITVGDGASGFNEASSNELDAVILDVML--PELDGFS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           +   +R      P++ +S    ++  +    +G +D + KP    E+       A   + 
Sbjct: 62  VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +    R      +   L  +E ++LE L+ ++GK V ++ +   ++ 
Sbjct: 122 GEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|158317452|ref|YP_001509960.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112857|gb|ABW15054.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   +          +G              +      D+  ++  L         
Sbjct: 6   LIAEDEYRIASFIEKGLRANGFLPVCVGDGASALEVALRGEVDLIVLDLGL--PDMDGFS 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A   VP++ ++    ++ T+   + G DD ++KP    E+LAR+    R  + 
Sbjct: 64  VLRRLRGAGVDVPVVVLTARDGVRDTVAALEGGADDYMSKPFRFEELLARIRLRLRADRA 123

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R  +V G    L  RE  + E  + + G+ +A+ Q+ SA++G 
Sbjct: 124 PEATVLRVRGVSLDLRTRRAQVGGRTVDLTAREFVLAETFLRHPGQVLAREQLLSAVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D     NVV+ ++  LR+K+    G D + + R +GY ++
Sbjct: 183 YDYDPGSNVVDVYVGYLRRKI----GADCITTVRGMGYRLE 219


>gi|256060055|ref|ZP_05450237.1| Transcriptional regulatory protein chvI [Brucella neotomae 5K33]
 gi|261324031|ref|ZP_05963228.1| regulatory protein BvrR [Brucella neotomae 5K33]
 gi|261300011|gb|EEY03508.1| regulatory protein BvrR [Brucella neotomae 5K33]
          Length = 239

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R            +A 
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +         E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKLAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|169826346|ref|YP_001696504.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990834|gb|ACA38374.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G++ +   N++E  +    +   D   ++  L       
Sbjct: 6   ILVLEDERAIAEMIDIILRKEGMTSITLCNTIEAAKSEIYAKTFDFYLLDIML--PDGSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           LE+  +IR  S  P+  ++   S    L  F +G DD + KP +      R  +     +
Sbjct: 64  LEVANLIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARYM 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++    N+           D  +  V G    +  R   +L+YL  N G+ ++K QI+ 
Sbjct: 124 KKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D   ++N V  HI KLR+K+  N      + + R +GY +
Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE   +      V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  V++HI KLR KL +K     + +   + Y  + 
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVXYKFEE 225


>gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +  + +  ++    + L  +++  +  ++  L    +   
Sbjct: 3   LLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGL--PDKDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R  S   P++ ++   +L+  +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQ 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +    ++    +   +      +  +E  IL  LM   G+ V +  +   +Y 
Sbjct: 121 GQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  +  N +E H+  LR+KL    G + + + R +GY ++
Sbjct: 181 WQD-DLGSNTLEVHVHNLRRKL----GKEVIRTVRGIGYRLE 217


>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +         ++G  +    +      L    R  V+ ++           
Sbjct: 9   IMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVM--MPEMNGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ + ++     + +I ++    +   +     G DD V KP    E+LAR+ A    + 
Sbjct: 67  EVCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLRNQF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP +V    ++   Q +V  L   E  +L++L+ N G  ++K++I   ++G
Sbjct: 127 PDLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+N+VE +I  LR+KL++K     + + R +GY +D
Sbjct: 187 -YDFGGEDNIVEVYIRSLREKLKDK-EHRVIRTLRGVGYRVD 226


>gi|254559730|ref|YP_003066825.1| DNA-binding response regulator in two-component regulatory system
           with ArcB or CpxA [Methylobacterium extorquens DM4]
 gi|254267008|emb|CAX22812.1| putative DNA-binding response regulator in two-component regulatory
           system with ArcB or CpxA (putative arcA=cpxC, dye, fexA,
           msp) [Methylobacterium extorquens DM4]
          Length = 244

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++     +  + G  + G  S      LQ     D+  ++  L   G    +
Sbjct: 13  LLVEDDDGIRALVTRILRESGYRVTGCRSGADMWSLQPDLAVDLVLLDVML--PGVSGFD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA   VP+I +S        +   + G DD V KP    E+LAR+ A+ RR  ++
Sbjct: 71  LLRALRAKGTVPVIMLSARNEEADRVLGLELGADDYVAKPFGRPELLARIRAVLRRASIA 130

Query: 123 NNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              A        +              + +G    L   E  +L   + + G+ + + QI
Sbjct: 131 PLPAAAARPEALAFAGWRLDLRSRALVDPEGAAVDLSGAEHDLLLVFLEHPGRVLGREQI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                G    A  +  V++ +S+LR+KL         + + R  GY +
Sbjct: 191 LEMCRGRL-AAPSDRSVDTLVSRLRRKLEPPDGAAPVIKTVRGSGYML 237


>gi|229829767|ref|ZP_04455836.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
 gi|229791756|gb|EEP27870.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +           S++                 D+  ++  L   G    E
Sbjct: 5   LIIEDERSIAELEKDYLELSEFSVDIETDGAAGLKKALEGDYDIFILDLML--PGADGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR     P++ +S        +     G DD V KP    E++ARV A   R    
Sbjct: 63  ICQKIREVKDRPILMVSARKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYSRL 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + N+  E   +++    R   + GE      +E  +L +L  +     +K ++F 
Sbjct: 123 VGASPIKNDCLEIRGLKIDKSDRRVWINGEERTFTAKEYELLLFLAEHPNHVFSKDELFR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+ +     E   V  HI ++R+K+  +      +++   +GY  
Sbjct: 183 EIWNMS-SNGEVATVTVHIKRIREKIEMDSSKPQYIETIWGVGYRF 227


>gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  +      +         R D+  ++  L        
Sbjct: 4   ILIIEDDLRIRRILQLELEHEGYLVSLAKDGKEGLEKAKLIRYDLILLDLML--PEISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+ + +R +S VP+I ++   ++++ ++  D G DD + KP +  E+ AR+      ++ 
Sbjct: 62  EVCKELRKNSDVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALRNKKD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N+ +   + +    ++  ++     L + E R+LE  + NR   +++ +I + I+G
Sbjct: 122 YQELNQLKYEDLVLDIIKKELIIEKRKVSLTKTEYRLLELFILNREITISREKIITEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +++ LRKK+        + + R  GY +
Sbjct: 182 -YDFEGEEKIVDVYLNSLRKKIEAP-NKKYIQNIRGFGYML 220


>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 242

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++ G     G  G ++E     +    +      D   ++      G   +
Sbjct: 10  LLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDV--SMPGISGV 67

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ +S    +   +    +G DD V KP    E+  RV A+ RR +
Sbjct: 68  DVVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGR 127

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I + +D R     G    L RRE  +LE L+ N G  + + Q+   ++G
Sbjct: 128 PVPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  + V++ +S LR+KL        + + R +G+++
Sbjct: 188 -YDFQVRSDAVDTVVSYLRRKLEADDRPRVLHTVRGVGFAL 227


>gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG  A     G +L+ F      +    SA  D   ++  L   G   +
Sbjct: 3   ILLIEDDKMIGDGIKAGLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSL--PGMDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R  R A    P++ ++   +L+  +    +G DD + KP    E+ AR+ A I RR 
Sbjct: 61  QLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRRH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R   + GE   L  RE  +LE  + N+G+ +A+T I   +Y 
Sbjct: 121 GVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE V  N VE HI  LR KL    G   + +   +GY++
Sbjct: 181 WEDE-VSSNAVEVHIHHLRSKL----GKGFIRTVHGVGYTL 216


>gi|311029188|ref|ZP_07707278.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +  G       +G        +   E        ++      L        +
Sbjct: 4   LIVEDDRTIAVGLEYSLRQEGYETILCPDVRSAESAIGEKLNEIDLCLFDLSLPDGSGYD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           L   ++     P+I ++ +      +   D G DD + KP   R     I + +   +++
Sbjct: 64  LCEQVKKREDKPVIFLTAFDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYHKQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   IR+ +        GE   L   E R+L     + G+ + + Q+   I+
Sbjct: 124 PEQVKSYIDIENIRINTLEGKVFKNGEEVLLTALEYRLLMIFANHIGQVLTRAQLLDRIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +  + V +N +  +I +LR+KL +       + + R +GY 
Sbjct: 184 DVAGDFVNDNTLTVYIKRLREKLEDNPQSPVIIRTVRGMGYK 225


>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +             +   + E       +   D+  ++  L        
Sbjct: 4   ILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIENDSFDLILLDVML--PKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I     +P+I ++   S+   +    +G DD + KP    E+LAR+  + R    
Sbjct: 62  TLLEKI-KPLGIPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N      + +  +       GE   L  +E  +L  L+ N+   + + ++   I+G +
Sbjct: 121 NTNVINFEDVEINLEEMTARKAGEAVELTLKEFELLVVLVQNKNVVLTREKLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E   +++HI KLRKKL+ K   D + +   LGY ++
Sbjct: 180 DYVGETRTIDNHIQKLRKKLQWK---DKIKTVFKLGYRLE 216


>gi|326798983|ref|YP_004316802.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326549747|gb|ADZ78132.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   ++   +     +   +   ++ +  E L  + + D+  ++  L   G++  
Sbjct: 7   IAVIEDDENLRFLVVHRLESEHYQVIQASNGKDAETLILTEKPDIVLLDWML--PGKQGS 64

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           E+   +R       +I ++        +D +  GV D + KP +   ++      +   +
Sbjct: 65  EVCANLRKAGFNNLVIMMTAKSQDVDKIDAYSFGVSDYITKPFNMDVLVAMIENKVKFFV 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G      +       G+   L   E RIL Y + N  + +++ ++   ++G
Sbjct: 125 NNANDTLYFGNTEHHPNTHSLIRDGKKIELTILENRILLYFLQNVNRVISRDELMQVVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +   V    ++ HI +LRKK+         + + R +GY  
Sbjct: 185 -YSSNVNTRTLDMHIVRLRKKIEINPDKPYHLQTVRGMGYKF 225


>gi|320664822|gb|EFX31957.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTLRGVGYMLEV 223


>gi|226356970|ref|YP_002786710.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318960|gb|ACO46956.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      GD G ++E  +S             D+  ++  L        
Sbjct: 13  ILVIEDDLDIANVLKMDLGDAGYTVEHADSAMNGLIKAREEHPDLILLDLGL--PDFDGG 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD + KP H  E+        +  + 
Sbjct: 71  DVVQRLRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDEL--LARVKVQLRQR 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R    + E   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 129 ITESLSMGDLTLDPQKRLVTYKAEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 189 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 226


>gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter sp. ADP1]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +  F+  +         + ++  ++  +       L 
Sbjct: 5   MLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMV--PRMDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL   
Sbjct: 63  ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLDRK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +    R+    +    + +   L   E R+LE  + + G+  ++ Q+   I     
Sbjct: 123 AEPEQNDLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPDS 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             V + V++SHI  LR+K+          + V +   +GY  ++
Sbjct: 182 FDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFEY 225


>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++++   +          +G  +                  D+          G   LE
Sbjct: 6   LVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLII--VNGALPGMSGLE 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R   S++P+I I+    ++  +   D+G DD + KP +  E  AR+    RR   
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++         F+       +G+    L  +E  +L+YL+++  + + + QI   ++G 
Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 183 YDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVL 222


>gi|146278821|ref|YP_001168980.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557062|gb|ABP71675.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++      GE  +
Sbjct: 8   LLVVDDDERIRSLLQKFLIRNGFLVSSARDAAQARRLLDGLEFDLIVLDVM--MPGEDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
            L R +R     P++ ++        ++  ++G DD + KP   +E              
Sbjct: 66  SLTRALREDLATPILLLTARGETSHRIEGLEAGADDYLAKPFEPKELLLRINAILRRVPS 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R ++       G +R   +  +     E   L   E  ++    A  G+ V++ ++   
Sbjct: 126 ARPELGPKVLHLGDVRYDLERGELWRGTEPVRLTATEAALMRIFAAQPGEAVSRERLVGD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + G  +   +E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 L-GRDEGQSQERAVDVQITRLRRKIEVDPRQPRYLQTVRGSGYML 229


>gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         ++G  +    + +      + A  D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFEVINSYTAKGALSKLNEA--DLIILDIML--PDMEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR K 
Sbjct: 60  EVLKE-ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRSKN 118

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLDGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +    + G  +E     +   ++ ++   D   ++  L   G   L
Sbjct: 3   ILVIEDDLEAASYMLKGLRESGHVVEHAADGKDGLYMAAAGSYDAMVVDRML--PGVDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + +R+     P++ +S    +   +    +G DD + KP    E+            
Sbjct: 61  TIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRAG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + +   GR     G    L  +E  +LEYLM + G+ V +T +   ++
Sbjct: 121 AVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        + + R  GYS+
Sbjct: 181 D-YSFDPQTNVIDVHISRLRQKIDKDFDRPLLHTVRGSGYSL 221


>gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
 gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIM--MPEMDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R+     P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   +S ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR+   G + + +   +GY ++
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230


>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
 gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 95/225 (42%), Gaps = 7/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +  +++D   + +  +     +G S+  F + +       S   D+  ++  L    G +
Sbjct: 3   LIYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPDMDGLE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
             +L +  +   ++P+I ++   +    +   + G DD V KP   RE++AR+       
Sbjct: 63  FCKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLKRS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R    +       + +     +  + G+   L  +E ++L  L+   GK + + QI S+
Sbjct: 123 KRSFKKDKIIRIKDLEIDPLKIEVRIDGKNIDLTAKEFKLLLLLINAEGKVLTRDQILSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   D  V +  ++ HI KLR KL        + + R  GY  +
Sbjct: 183 VW-ENDLDVFDRTIDVHIKKLRDKLGIYG--RCIKTVRGAGYKWE 224


>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis EAS054]
 gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
 gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
          Length = 253

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 82

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G ++           +    +E +  +    +      L
Sbjct: 17  ILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPKLDGL 76

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R ++  +   P+I ++    +   +   D+G DD + KP +  E++AR+  I+R+  
Sbjct: 77  EVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIFRKNT 136

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       E Q +   L +RE  +L +L  ++G+ +++  I   ++G+
Sbjct: 137 QPA-IYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILEEVWGM 195

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +   + N V++++  LRKKL      + +++ R LGY ++ +
Sbjct: 196 -NFGGQLNTVDTYVRYLRKKLD----KNMIETIRGLGYRLNKD 233


>gi|71736792|ref|YP_274243.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557345|gb|AAZ36556.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LAR+         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL  +      + ++  +GY +
Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +   ++      L +    D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYEVLASSTGREA--LTNVEGADLVVLDLGL--PDMDGLD 60

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + R IRA   +VP++ ++        +   D+G DD V KP    E+LARV A       
Sbjct: 61  VAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRHTA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +      IRV               L  +E  +L  L+   G  V + ++   ++G
Sbjct: 121 EPAESELRAQDIRVDVAAHRAFSGSTELQLTAKEFDLLRVLLREAGSVVERDELMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDEASDPHYITTVRGMGFRFE 222


>gi|307151276|ref|YP_003886660.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306981504|gb|ADN13385.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 801

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +         G +++  +  E    L +    D+  ++  L       +
Sbjct: 3   ILVVEDDKFTIEFLQTTLTVSGYTVDLASDGESGLELATLWNYDLILLDLQL--PKVDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA  +  P++ ++        +   D+G DD + KP   + ++A++ ++ RR  
Sbjct: 61  KICRQLRALKNTTPILILTVESENNKIIQGLDAGADDYLIKPCDPKYLIAKIRSLVRRSS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + +         Q +   L R+E ++L+  + N  +  +++ I   ++  
Sbjct: 121 GYDSLLSWGDLCLDPVSTQVTYQQQPLVLRRQEYKLLKLFLRNPHRVFSRSNILDLLWSA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            D    EN V + I  LR KL++     D +++   LGY +
Sbjct: 181 EDF-PSENAVTNLIKDLRNKLKDSGMTEDCIETLYGLGYRL 220



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +      L    G+ + G         + +    D+  ++          
Sbjct: 493 VI-IVDDDPTMLTALKNLLHPWGLKITGLTEPSHFWEVVTQTHPDLLLLDI--EMPTFNG 549

Query: 61  LELPRIIRAHSQV 73
           +EL R++R  +  
Sbjct: 550 IELCRVVRQDANY 562


>gi|326789239|ref|YP_004307060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540003|gb|ADZ81862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 219

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G  G +     +      L  S   D+  ++  L        
Sbjct: 4   ILVVEDEIAINELVRRNLGLVGHTCYSAMNGLEALELIKSKNVDLVILDIML--PKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +          P I ++   +++  +     G DD + KP    E+LARV A+ RR + 
Sbjct: 62  GVLEQ---MKDTPTILLTAKSNVEDRVKGLVMGADDYIIKPFEMLELLARVEAVLRRTRK 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   ++V    R   ++G++     +E  +LE L+ NR   +++ ++   I+G +
Sbjct: 119 EEDVFEVKEVKVEFGSRKIYLRGKLVDCTPKEYELLEVLIKNRNVALSREKLLEMIWG-Y 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   E   V+ HI +LRKKL  +     + +   LGY ++ 
Sbjct: 178 DYMGETRTVDVHIQRLRKKLELEGQ---IATVYKLGYRLEV 215


>gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 235

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D A ++         +G  +   +S++       + R D+  ++  L       +
Sbjct: 8   IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGL--PDGDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +RA S++P++ +S   +    +   D+G DD + KP    E+LARV A  RR   
Sbjct: 66  DFIRDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSR 125

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S       E G IRV    R  E  G    L   E R+L YL+AN    +   Q+   ++
Sbjct: 126 SAGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      + + V  ++  LRKK+ +       + ++  +GY  
Sbjct: 186 GPGHVE-DSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRF 227


>gi|238028534|ref|YP_002912765.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237877728|gb|ACR30061.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 252

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L    G  V
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVCSGVDADTALSMQTFDLLILDLGLPKMPGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 63  LRRLRA--RNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSGA--RIATVRGLGYCLEK 220


>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    NS E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKAHFPIDHHLKTVYGVGYR 219


>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|163814531|ref|ZP_02205920.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
 gi|158450166|gb|EDP27161.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +      +  D+G +     S++    + +  + D+  ++  L        
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINL--PDGTGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + +R  SQVP+I  S   S    ++  D G DD + KP   +E+++R+ +I RR   
Sbjct: 69  SFCKELRHTSQVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYG 128

Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++              I +    R          +  +E  +L Y+  NRG+ + K QI
Sbjct: 129 VDDNKSEMLTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            SA++GL+   VE + V  H+  LR+KL  +      + +    GY +
Sbjct: 189 MSAVWGLY-SDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235


>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 250

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D        +G  +   +            R DV  ++      G   L +
Sbjct: 28  VVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIM--MPGLDGLAV 85

Query: 64  PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
              +RA     P++ ++   S+   +     G DD V KP    E++AR       +   
Sbjct: 86  LTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSSIT 145

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN   E G + +     +    G    L   E  +L YLM N  + +++ QI   +
Sbjct: 146 IAGDSNPVIEVGDLTLDESTYEVARGGTRVELTATEFELLRYLMRNPRRVLSRAQILDRV 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     +VVE +IS LRKK+ + LG   + + R +GY +
Sbjct: 206 WS-YDFGGRASVVEIYISYLRKKI-DVLGPPMIHTVRGVGYML 246


>gi|325262900|ref|ZP_08129636.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
 gi|324031994|gb|EGB93273.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G  +     G    G  S+   + L       +  ++  L        
Sbjct: 4   ILLVEDDETILFGIESALKRKGYVCTGCASVRQAKELFPGG-FQLVLLDLNL--PDGSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R ++  +  P+I ++    ++      D G DD + KP H   + +R+AA+ RR   
Sbjct: 61  DFCRWVKERADTPVIFLTVRDDVRDITRGLDMGADDYITKPFHVAVLESRIAAVLRRTPA 120

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                          +     +  +       E R+LE LM N+G+ + +  I   ++  
Sbjct: 121 EGGNVLICGNIRLNKEKIQVMLDDKPVDTTALEYRLLEVLMENKGRTLPRNLILDKLWDA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               V +N +   + +LRKKL +    + + + R +GY ++ N
Sbjct: 181 EGNFVNDNTLTVTVKRLRKKLMD---TEYIVTIRGIGYRMEEN 220


>gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++                  DV  ++           
Sbjct: 4   ILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKCKEQEFDVIVMDIM--MPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+  + +P++ +S        L  F+ G+DD V KP   +E++AR+  I +R + 
Sbjct: 62  SSYKEIKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQR 121

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               A  E   +++  DGR   V GE   +  +E  +L +L  N    +++ ++ S ++G
Sbjct: 122 IIENAVLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   ++  V++HI  LR  +++      + + R  GY  D
Sbjct: 182 -YDFYGDDRTVDTHIKMLRNSIKDY--RKFIVTVRGTGYKFD 220


>gi|296876915|ref|ZP_06900961.1| response regulator (family protein to RR01Spn & Sth) [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432107|gb|EFH17908.1| response regulator (family protein to RR01Spn & Sth) [Streptococcus
           parasanguinis ATCC 15912]
          Length = 260

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L    G  +           +   +   +  ++  L        
Sbjct: 39  ILLVEDDEIIRQQVKQLLEQWGYEVVAAEDFMDVLGIFVESDPHLILMDIGLPL--YNGY 96

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP     +LA+V         
Sbjct: 97  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYE 156

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E     +     D   +GEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 157 FGTDQNLLEHRGAILNLKSTDLMYEGEVIKLTKNEFQILRVLFEHTGSIVARDDMMKELW 216

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 217 -NSDFFIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGY 255


>gi|228477728|ref|ZP_04062357.1| response regulator [Streptococcus salivarius SK126]
 gi|228250617|gb|EEK09828.1| response regulator [Streptococcus salivarius SK126]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKILEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   QGEV PL + E +IL+ L  + G  V++  +   ++
Sbjct: 122 FGKDQSLLEYMGVILNLKAMDLVYQGEVVPLTKNEFQILQVLFDHAGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      D +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGY 220


>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G   +             S   DV  ++  L       LE
Sbjct: 7   LIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMML--PKLDGLE 64

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +   VP++ ++        +   ++G DD + KP   RE+ ARV A  RR + 
Sbjct: 65  VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +              + ++     +  +   +  +E  +L   M N G+  ++T++
Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              ++G    +  E+ V SHI++LR K+         + +   +GY  +
Sbjct: 185 LDLVWGAS-YSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232


>gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +       L +S++ D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
           +L   +RA     P++ +S    +   +    +G DD + KP    E  + A       +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|152989684|ref|YP_001349576.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150964842|gb|ABR86867.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G+ ++   +         + R D+  ++  L   GE  L
Sbjct: 8   ILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + R +R     P++ ++        +   + G DD V KP+  R         +    A
Sbjct: 66  SICRQVRPQFDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  + + R   G + + +  R+  +      L   E  +L  L AN G+ +++ +I
Sbjct: 126 PETGAPPLDSKRLAFGRLVIDNAMREAWLDEATIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F+A+ G+ +   ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 FNALRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLF 232


>gi|332993185|gb|AEF03240.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + GV +E     +       S    +  ++  L       L
Sbjct: 5   ILIVEDDQDIANLMRVNLLELGVEIEHQTDGKVALECALSDEFAIVILDVML--PSMSGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R A     +I ++   S    +   + G DD + KP   RE+ ARV +  R+  
Sbjct: 63  DICRKVRDALPMQSIIMLTSKTSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKYH 122

Query: 121 VSNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V      T                       +  E   L   E  +L +L ++ G+  ++
Sbjct: 123 VVQQTQTTQQQIDTPLKLGRLVIDQRNHQVFLSEEELVLTATEFELLHHLASHPGQVFSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +Q+  +++G +  +  E+ V SHI++LR KL  +      V +   +GY  +
Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRSKLENDATAPQIVQTVWGVGYKFN 233


>gi|319780215|ref|YP_004139691.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166103|gb|ADV09641.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +          ++   +++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLAARPPNLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 62  ELLRRMRQKSDLPVIFLTSKDDEIDELFGLKMGADDFIRKPFSQRLLVERVRAVLRRASA 121

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               A+T   +          +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 122 REAAAKTPSQQARSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  + Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDSAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRF 230


>gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
 gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
          Length = 235

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L +    D+  ++      GE   
Sbjct: 6   ILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIM--MPGEDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R +S +P+I ++        +   + G DD + K    RE+LAR+  I RR + 
Sbjct: 64  TLCQKLRKNSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQS 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR-------ILEYLMANRGKRVAKTQIF 174
           + N   T  +R      D   +       R  ++       +L   + +    +++  I 
Sbjct: 124 TANSKLTRKVRFDDWLLDTVTRQLTHVASREVKQLSGADLSLLGLFVNHAQSILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227


>gi|187935151|ref|YP_001886052.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187723304|gb|ACD24525.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G       DG  +    ++     + +    D+  ++  L        
Sbjct: 4   ILIVEDDIILNSGLCYNLQLDGYVVTPKYNINSTLKILNIENFDLIILDVNL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I+     P+I ++        L  F  G DD + KP +      ++AAI RR   
Sbjct: 62  DLCKSIKQIQDTPIIFLTACDLEDDILSGFKLGADDYITKPFNINIFRQKIAAILRRCTK 121

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +            +  +     V   V      E ++L+ L++N+G+ + +  +   ++ 
Sbjct: 122 NLFSCIYKDSNLTIDFNEMTATVNDNVISFTPTEFKMLKILISNKGQVLTRQVLLEKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                V+E+ +  +I++LR K+  +     + +   +GY 
Sbjct: 182 CDRNFVDEHTLTVNINRLRNKIETE-NVKYIKTIYGMGYM 220


>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    A        +    S +    L +    D+  ++  L        +
Sbjct: 9   LVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVML--PDLDGFQ 66

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++   +++  +    +G DD V+KP    E++ R+ AI RR +V
Sbjct: 67  VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQV 126

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +++  D  +      V  L   E ++L YLM N G+ V+K QI  
Sbjct: 127 EPYPGADSGVLRYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   +  +VES++  LRKK+ ++     + + R +GY++
Sbjct: 187 RVW-NYDFGGDGRIVESYVYYLRKKVDSR-APALIHTIRGVGYTL 229


>gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 263

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++          G  +           L  + + D+  ++  L       +
Sbjct: 38  ILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQHDLLLLDVMLPA--LDGI 95

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S  P++ +S        +   ++G DD V KP+    ++AR+ ++ RR   
Sbjct: 96  GLCRRIRETSTAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRASA 155

Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                      +     +    G+   L   E R+L    A+ G  + 
Sbjct: 156 AAPPPAGPGAPGPAGLLVFGDLTIDPAALEVRRDGQEIALAPSELRLLLEFSAHPGIVLD 215

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   ++  +    +  VV+  + +LR+K+    G D +++ R  GY +
Sbjct: 216 RQTLLRNVWD-YGWDGDTRVVDLCVQRLRRKI----GADRIETVRGFGYKL 261


>gi|297203139|ref|ZP_06920536.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148318|gb|EFH28940.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      NS E      +  R D+  ++  L        
Sbjct: 39  LLVVDDDPPIADLVATVARYEGWEAVTANSGEEALSRAAEFRPDIVVLDLML--PDLDGF 96

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    + P++ ++   ++   +     G DD + KP    E++AR+  + RR  
Sbjct: 97  GVLDRLRRSGTMVPVVFLTARDAVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 156

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + +  D R+     ++  L   E  +L YLM      + K QI   +
Sbjct: 157 GPGFQRSVLRVADLTMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 216

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +      NVVE  +S+LR+KL +      + + R  GY 
Sbjct: 217 W-EYGFGGRSNVVELVVSRLRRKLDDTGEP-LIHTVRGFGYV 256


>gi|326317489|ref|YP_004235161.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374325|gb|ADX46594.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 257

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + +   A    DG+        +    +  + + D+  ++           +
Sbjct: 30  LIAEDEPEIAEILAAYLARDGLQTVHAPDGQAALAMHQALKPDLVLLDV--QMPRVDGWK 87

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P++ ++        L     G DD V KP +  E++ARV A+ RR + +
Sbjct: 88  VLSEIRHRGDTPVVMLTAMDQDIDKLMGLRIGADDYVVKPFNAAEVVARVQAVLRRSRGA 147

Query: 123 NNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                                       + Q  +  L   E ++L  LM +  +   + +
Sbjct: 148 GGGANAQAVLRAGIFQIDPETHEASVHLDGQRHLLDLTLTEFKLLACLMRSPRRVFTRLE 207

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  A   L +    E  V+SHISKLRKKL          S R +GY +
Sbjct: 208 LLEAC--LPEGDTLERTVDSHISKLRKKLEPLGVEGLPVSVRGVGYRL 253


>gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
 gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + + +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLML--PGEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R  ++ +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +     G  ++    R+     E  PL   E  +L+ L++   + +++ +
Sbjct: 125 NELPGAPSQDDAVITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSYPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + S   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMSLARGR-EYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVF 232


>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|213968139|ref|ZP_03396284.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato T1]
 gi|301383855|ref|ZP_07232273.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058467|ref|ZP_07250008.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato K40]
 gi|302133420|ref|ZP_07259410.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927119|gb|EEB60669.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato T1]
 gi|331016266|gb|EGH96322.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGTEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP+ V    R   +      L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 SDKPESALRFGPLTVDLAYRRVLLDDLEVALTRKEYSVLAQLARHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHAE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIIWDEAKHSVSVHNEELFLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|153955660|ref|YP_001396425.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856034|ref|YP_002473156.1| hypothetical protein CKR_2691 [Clostridium kluyveri NBRC 12016]
 gi|146348518|gb|EDK35054.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569758|dbj|BAH07742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G   +           L  + + D+  ++     +    
Sbjct: 10  ILLIDDEIELLKLMETVLRKEGFKRIFKALKGTDGINLCKNEKPDIVVLDVM--MEDMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ R IR  S VP+I +S        +     G DD V KP   +E++ R+ A  RR  
Sbjct: 68  FEVCRAIREFSYVPVIFLSARGDHIDKILALGLGADDYVTKPFSPKEVVFRIKAHLRRNI 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +   +   G + +     +    G+   L  +E  +L Y+  N  + + K  I
Sbjct: 128 YIKNELTMKKEKICFGDLIIDFKKGEVLKSGKNITLTPKEYHLLCYMTQNANQILTKEMI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++   +    +N +  H+ KLR+KL  N      + + + LGY  +
Sbjct: 188 CDEVW-NDNYEGYDNTIMVHMRKLRQKLESNPSKPQYIVTVKGLGYKFN 235


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 8/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G  ++   +             DV  ++  L         
Sbjct: 6   LLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVML--PEMNGFT 63

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   IR       P+I ++    L+  +    SG DD + KP H  E+LAR+ A+ RR  
Sbjct: 64  VLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRRKG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S               R+ +V GE   L R E  +L+ L+ N G  ++K ++   ++G 
Sbjct: 124 YSEKILYGNIEMNL-SSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVWGT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +     NVVE +I+ LRKKL +      + + R +GY 
Sbjct: 183 EEW-GNPNVVEVYINYLRKKLGSAG--KIIKTVRGVGYV 218


>gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  ++     +  +    +   D+  ++  L       L
Sbjct: 3   ILLVEDEPGIAQFISQGLKETGYVVDIAPDGQQGKNYVDAVEYDIIILDIML--PKIDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L   IRA    VP++ ++   S++  +   + G DD + KP    E+LAR+ A   R  
Sbjct: 61  KLLGEIRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N     G + +    R+ +   ++  L   E ++LEYL+ N  + + +TQI   ++ 
Sbjct: 121 LQFNTVLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D     NVV+ ++  LR+K+        + + R +GY +
Sbjct: 181 L-DFYSNSNVVDVYVGYLRRKIDRGFQRPLLHTVRGVGYCM 220


>gi|167031851|ref|YP_001667082.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166858339|gb|ABY96746.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVML--PGLDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSSSH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + DG      + G ++   ++      +  +    ++ ++          + 
Sbjct: 7   LIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIM--MPKMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R +   P+I ++        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  MVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +N    G + + +D ++  + GE+  +   E +IL+ LM N G+  +  +
Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   +EA+  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYEKVWN--EEAINTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEK 233


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|294627682|ref|ZP_06706264.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598034|gb|EFF42189.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 259

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 29  LVVDDDPDLRKLIGEFLSAHGYQVDMAGNVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 147 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 207 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLE 62
           L++D   +          +G      ++ E           D+  ++  L    G  +  
Sbjct: 7   LVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLSGIDICR 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
             +  +    +P+I ++     +  +   ++G DD + KP  H E++AR+ A     + +
Sbjct: 67  SLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRRSKPR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ ++A    + +    R          L   E R+L++ + N  +  ++ Q+ + I+  
Sbjct: 127 VAEDKAVYEDLVIDRIQRKVFRNETQIDLGPTEYRMLDFFIKNPKRVYSRDQLLTNIW-P 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  VE   V+ HI +LRK +      + + + R  GYS+D
Sbjct: 186 DNINVENRTVDVHIRRLRKAINLDGTKELIRTVRSAGYSLD 226


>gi|323343098|ref|ZP_08083329.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463162|gb|EFY08357.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 75/231 (32%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        DG  +   +               +  ++           
Sbjct: 4   ILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRALD-ESIKLVILDVM--MPEITGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+   IR H  VP++ +S   + Q     F  G DD ++KP                  +
Sbjct: 61  EVSEAIRKHYNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYIQ 120

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N       I +  +       G    L  RE RIL+ L  NRGK  +  
Sbjct: 121 YDRATENALEQNKVNTIDSITIDLEKGITLKDGLPLDLTEREFRILKLLATNRGKIFSIQ 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            I+  ++         N V  HI  LRKK+ N       + +    GY ID
Sbjct: 181 SIYENVWQDEYLYSSANTVMVHIRNLRKKIENCPENPKIIKNIWGRGYKID 231


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++     +           D+  ++  L       +
Sbjct: 3   LLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLML--PKLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +  +  R      P++ ++        +   D+G DD + KP + +E+LARV A + R  
Sbjct: 61  QFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + GP+ +         QG++  L  +E  ILE  + NR +  +++ +   ++ 
Sbjct: 121 LSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            FDE+  EN V + I  LR+KLR      + +++   LGY ++
Sbjct: 181 -FDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRLN 222



 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +         G +L      +           D+  ++  +    G  +
Sbjct: 510 LMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISGIDL 569

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            ++ R      ++P++ +S + S +   + F +G DD + KP
Sbjct: 570 CQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKP 611



 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++D+   +           G+  E   +L   +   +S + DV  ++ F    GE  
Sbjct: 385 LLIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENG 443


>gi|157369741|ref|YP_001477730.1| two component heavy metal response transcriptional regulator
           [Serratia proteamaculans 568]
 gi|157321505|gb|ABV40602.1| two component heavy metal response transcriptional regulator,
           winged helix family [Serratia proteamaculans 568]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D      G+ G S++   +     +       D   ++  L   G    
Sbjct: 3   ILVVEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEDAYDAIVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S VP++ ++    +Q  +   + G DD + KP    E++ R+  + RR  V
Sbjct: 61  QIIEVLRKKSDVPILFLTARDGVQDRIHGLELGADDYLIKPFSFTELVLRLRTLLRRGTV 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      ++    R    Q +V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYAIADLQLDVLRRKAVRQEQVIPLTNKEFMLLHLLVRREGEVLSRTMIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+        + S R +GY  +
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKIDRPFDVKLIHSVRGIGYVCE 220


>gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262]
 gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V  +   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR+   G + + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
 gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +     + E    L +    D+  ++  L        
Sbjct: 5   ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGL--PDTDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           EL + +R     P+I ++        +   + G DD +             +      + 
Sbjct: 63  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +                    QG   PL + E R+L  L+   G+  ++ ++ +A++G
Sbjct: 123 RPAAKTESVPVWHDDVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMFG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +   + + + +HI  LR KLR      + + +   LGYS + 
Sbjct: 183 -GNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFNE 225


>gi|215425719|ref|ZP_03423638.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           T92]
          Length = 210

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 9/212 (4%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75
             L   +G                  A  D+  ++  L   G    ++ + +RA S VP+
Sbjct: 1   AFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTDVCKQLRARSSVPV 58

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GP 130
           I ++   S    +   + G DD V KP   RE++AR+ A+ RR    ++         GP
Sbjct: 59  IMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGP 118

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   +
Sbjct: 119 VRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGA-DYVGDTKTL 177

Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + H+ +LR K+  +      + + R LGY ++
Sbjct: 178 DVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 209


>gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       D+G       + +    + +  + D+  ++          +
Sbjct: 8   ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVM--MPEMDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAIY 116
           E  R +R   ++P+I ++        ++   SG DD + KP   +E+             
Sbjct: 66  EALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYG 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    +   I+V  + R   + GE   L R+E  +L + M +  +   + Q+   
Sbjct: 126 YNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLLDH 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+         V++H+  +R K+    G D   +   +GY ++
Sbjct: 186 VWGVNYTTGGHRTVDTHMKTMRFKMG--SGGDYFRTVYGVGYVLE 228


>gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2]
 gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G +++     E  +   S     +  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLML--PGEDGL 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + +P+I ++        ++  D+G DD + KP + +E+ AR+ A+ RR  
Sbjct: 66  SICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHV 125

Query: 121 VSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP  +    R     G+   L   E  +L+ L+ N  + + + +
Sbjct: 126 RELPGAPSKEEGSVTFGPWLLDLGNRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + S   G  + +  E  ++  +S+LR+ L +       + +   +GY  
Sbjct: 186 LMSLARGR-EWSAMERSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVF 233


>gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX]
 gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX]
          Length = 219

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +    +          +   D+  ++  L        
Sbjct: 4   ILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGL--PDADGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119
            + R +R   S++P+I ++   S++ T+   ++G DD + KP    E+LAR+   +    
Sbjct: 62  TVLRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAH 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R          L  RE  +LE  + + G+ +++ QI S ++G
Sbjct: 122 NAETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+  I  LRKK+        +++ R +GY +
Sbjct: 182 -YDYDPGSNVVDVFIRALRKKIGAH----RIETLRGMGYRL 217


>gi|77465059|ref|YP_354562.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464511|ref|YP_001045624.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332560656|ref|ZP_08414974.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77389477|gb|ABA80661.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126106322|gb|ABN78852.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332274454|gb|EGJ19770.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  + +         +   +      E    + +    DV  ++      GE  L 
Sbjct: 8   LVVEDDPVSRQTLAMYLRKENHEVSEARDGEQMRRVFAKGDVDVVMLDIN--MPGEDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+V +I ++        +   + G DD V KP + REIL R   + RR+   
Sbjct: 66  ILRELRRQSEVGIIMVTSRKEDVDRIVALELGADDYVTKPYNMREILPRAKNLARRVAAL 125

Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  P   F             +  G    L R E  +L   +A+ G+ + + Q+ +
Sbjct: 126 RLVRPDQPATTFDGWTLDAAHWALTDPAGNHVKLTRAEFELLATFVAHPGQVLTRDQLMN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G       +  ++  + ++R+K+  +      + +   +GY  
Sbjct: 186 HV-GRRGHETFDRTIDVLVRRIRRKIEADPSDPRLIVTVHGIGYVF 230


>gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLML--PGEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
            + R +R  ++ +P+I IS        +   + G DD ++KP             +  + 
Sbjct: 65  SVCRRLRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +   + G  ++    R+     E   L   E  +L+ L++   + +++ +
Sbjct: 125 HELPGAPTSDDTVVKFGKFKLDLGTREMFHHDEQLSLTSGEFSVLKVLVSYPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + S   G  +    E  ++  +S+LR+ +         + +   LGY  
Sbjct: 185 LMSLARGR-EYGAMERSIDVQVSRLRRLIEEDPAQPRYIQTVWGLGYVF 232


>gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +   +           A   +  ++  L       L
Sbjct: 7   ILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVVLVILDIML--PNMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R IR  S VP++ ++        +   D G DD + KP    E++        R   
Sbjct: 65  EVCRRIRQKSTVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLRRSHW 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  + VS      G + +  + +     G+   L   E  +L+ L  + GK      + 
Sbjct: 125 AFDEVPVSAGVKRFGGLEIDFEQKQVWRDGDPVKLSPTEFHLLQELALHPGKIFTHEALL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G+ +   E   +  +I +LR+KL         + ++  +GY +
Sbjct: 185 RRVWGV-EYRSESEYLRVYIGRLRRKLEANPSRPTHIMTEPGIGYYM 230


>gi|325676260|ref|ZP_08155939.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325552821|gb|EGD22504.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   V           G  L+  +         S +R D   ++  +    G  V
Sbjct: 10  ILLVDDDPKVLSSLTRGLRLSGFELDTADDGASALRAVSESRPDAIVLDVNMPVLDGVSV 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R +   + VP+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR  
Sbjct: 70  VTALRAM--GNDVPICVLSARSTVGDRIAGLEAGADDYLTKPFELGELVARLRALLRRAP 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   A T  +        GR   + GE   L +RE  +LE L  N G  +++ ++   +
Sbjct: 128 RTPAPAGTVTVGPLEVDLPGRRVHMGGERIDLTKREFDLLEVLAENAGIVLSRVRLLELV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+   + LR+KL        + + R +G+ +
Sbjct: 188 WG-YDFDADTNVVDVFATYLRRKLEAGGRPRVLHTVRGVGFVL 229


>gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       +    ++  ++             D+  ++  L   G    
Sbjct: 3   ILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ R +R      P++ ++    ++  +   + G DD + KP    E+    R      +
Sbjct: 61  EVMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRRGK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V     +   + +    R     G+   L  +E  +LE LM  +G+ + ++ I S ++
Sbjct: 121 SGVEATSLKVADLELDLLRRRVTRAGKRIDLTSKEFGLLELLMRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAVRRLRSKIDDAFEPKLLQTVRGMGYVLE 222


>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D         G +            +    + ++  ++      G    
Sbjct: 4   ILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQM--MPGMDGH 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R  S    +P+I ++     +  +   + G DD V KP   +E++ RVA++ +R
Sbjct: 62  GVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLKR 121

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     AE GP     +     +  E   L   E +++ +++   G+ + +  + S 
Sbjct: 122 CEHTPGSVIAEYGPFTFDKNALKFYIDKEEVDLTATEFKLMIHMVEREGQTLNRNDLLSC 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +    +   +++H+ +LR+KL      D +++ R +GY  
Sbjct: 182 VWG-YSHQAQSRTLDTHMKRLRQKL--APYADCIETVRSIGYRF 222


>gi|146342861|ref|YP_001207909.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146195667|emb|CAL79694.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 243

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 14/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S        +    D+  ++      GE   
Sbjct: 23  LLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVM--MPGESGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+  R+  I +R   
Sbjct: 81  DLARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAP 140

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +   GP        + +   E+  L  RER +L  L   RG+ V +  +   
Sbjct: 141 PPAEEVVEQISFGPFIYHLARGELKQGDEIVHLTDREREMLRILANARGETVPRGAL--- 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                +  V E  V+  I++LR+KL  +      + + R +GY +
Sbjct: 198 ---TGNGTVNERAVDVQINRLRRKLESDPANPLFLQAVRGIGYRL 239


>gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    S E      +  R  +  ++  L   G    
Sbjct: 8   ILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVML--PGIDGF 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
            +   +RA   +VP++ ++        +   D G DD + KP +  E           + 
Sbjct: 66  TVCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRSA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R +        G   VF              L   E ++L       G+ + + +I  
Sbjct: 126 WYRPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLTELEVKMLSLFFHREGEAIPRGEILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G +    E   +++ I +LRK             + R +GY  
Sbjct: 186 NVWG-YSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGYRF 230


>gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
 gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++  +  E   +L ++   D   ++  L       L
Sbjct: 3   LLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATESYDAVVLDLGL--PTIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  +     P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + N +E  ++++RKKL    G D + + R LGYS+D 
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADVITTIRGLGYSLDE 218


>gi|282896096|ref|ZP_06304122.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199014|gb|EFA73889.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+    +         + G                   +  +  ++  L   GE  L 
Sbjct: 9   LVIEPDETLASQLGFDLQEAGYEAIIATDANSGLHKCRDLQPALIVVDRML--PGESGLS 66

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +RA     P++ +    ++   +   ++G DD + KP    E    ++   +    
Sbjct: 67  FCKNLRATGNTKPVLILMARDAMDDRVACLEAGADDYILKPYRSEEFSKLISLYLKPDID 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+ +     + +    R      +   L  +E  +L++ M +  + + + QI   ++G +
Sbjct: 127 SSEQLRFVDLVLDIGTRRAIYNNKAIDLTMKEFELLKFFMEHPREVLTREQILENVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV+E +I  LR K+        + + R +GY +
Sbjct: 186 DFVGESNVIEVYIRYLRLKIEENGQKRLIQTVRGVGYVL 224


>gi|271499431|ref|YP_003332456.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342986|gb|ACZ75751.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D         A    D   +           +    + D+  ++  L   G    
Sbjct: 6   ILIIEDDTDAASVLEAYLKRDNFQVLLAGDGVGGLEMALRVKPDLILLDVML--PGLNGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP+I ++        +     G DD V KP H  E++ARV A+ RR   
Sbjct: 64  EVLAALRRKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTSG 123

Query: 122 SNNRAETGPIRVFSDGRDPE--------VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 T         +D             +   L   E  +L  L+  + +  ++ ++
Sbjct: 124 VMTPGRTLSFGPLVVDQDAMLAAVTDTQGHSQPLELTPTEFSLLTTLLRAQTRAFSRQEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A   L +    E VV++HI  LRKKL        + + R +GY  
Sbjct: 184 LEAC--LPESDALERVVDTHIYNLRKKLEAVGISGVLLTVRAVGYRF 228


>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
 gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25]
 gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25]
          Length = 235

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G  +    +      L +    D+  ++      GE   
Sbjct: 6   ILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIM--MPGEDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R +S VP+I ++        +   + G DD + K    RE+LAR+  I RR + 
Sbjct: 64  TLCQKLRKNSDVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQT 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR-------ILEYLMANRGKRVAKTQIF 174
           + N   T  +R      D   +       R  ++       +L   + +    +++  I 
Sbjct: 124 TANSKLTRKVRFDDWLLDTVTRQLTHVASREVKQLSGADLSLLGLFVNHAQSILSRDDIA 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  D    E  ++  IS+LR  L +K     + + R  GY +
Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227


>gi|302530944|ref|ZP_07283286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439839|gb|EFL11655.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 250

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +        +G  +    +      +    R D   ++  L       LE
Sbjct: 27  LVVDDESTLAELVSMALRMEGWEVRSAGTGAEAVRIGRDFRPDAVVLDVML--PDFDGLE 84

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +P++ ++   +++  +    +G DD V KP    E+  R+ A+ RR   
Sbjct: 85  VLRRMRAETPYLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    +      + +  D R+    G++ PL   E  +L YLM N  + ++K QI   +
Sbjct: 145 VSGATGSQLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPRRVLSKAQILDRV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LRKK+        + + R  GY +
Sbjct: 205 WS-YDFGGQANIVELYISYLRKKIDADREP-MIHTMRGAGYVL 245


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  + G  + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLML--PGEDGLS 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R      P++ ++        +   + G DD + KP + RE        +     
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +      +      G  ++    R+    GE   L   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSTAEKMVTFGSYQLNLATRELSRDGEPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  +    E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 232


>gi|126437133|ref|YP_001072824.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236933|gb|ABO00334.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 248

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +        +      +      DV  ++  L   G   LE
Sbjct: 18  LVVDDELPLAEVVASYLEREQFEAVVAGNGVDAIAVARDLDPDVVILDLGL--PGIDGLE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR ++ 
Sbjct: 76  VCRQLRTFSDAYVVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRIL 135

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +    R+  +  E+  L R E  ILE L A  G  +++ 
Sbjct: 136 QTAAAPAERETAPPRRFGALSIDVAAREVHIDDELILLTRTEFDILEALSARPGIVLSRR 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   I         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 196 QLLEIIRDEP-WVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 244


>gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685]
 gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685]
          Length = 220

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G     G +  + +   S      L  S +  +  ++  L        
Sbjct: 3   ILIVEDDTLIQQGLAQAMGRENYACDCAGSAAEANGLLQSGQYSLIILDLGL--PDMDGG 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  R      P++ ++   ++   +   D+G DD + KP    E+LAR  A+ RR++
Sbjct: 61  SALRQWRRDGIATPVLILTARDTVGERVAGLDAGADDYLVKPFALAELLARTRALIRRMQ 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +                     +   +  +E  IL  LM   G+ +++  +   +Y 
Sbjct: 121 GLCDNILQVDNIRLDLSNHQVSCNNQALEVTPKEFTILARLMTRAGQTISREVLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             DE +  N +E HI  LR+KL    G + + + R +GY ++ 
Sbjct: 181 WQDE-LSSNSLEVHIHNLRRKL----GRERIKTLRGVGYRLEK 218


>gi|221369053|ref|YP_002520149.1| DMSO/TMAO-response regulator [Rhodobacter sphaeroides KD131]
 gi|221162105|gb|ACM03076.1| DMSO/TMAO-response regulator [Rhodobacter sphaeroides KD131]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  + +         +   +      E    + +    DV  ++      GE  L 
Sbjct: 8   LVVEDDPVSRQTLAMYLRKENHEVSEARDGEQMRRVFAKGDVDVVMLDIN--MPGEDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+V +I ++        +   + G DD V KP + REIL R   + RR+   
Sbjct: 66  ILRELRRQSEVGIIMVTSRKEDVDRIVALELGADDYVTKPYNMREILPRAKNLARRVAAL 125

Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  P   F             +  G    L R E  +L   +A+ G+ + + Q+ +
Sbjct: 126 RLVRPDQPATTFDGWTLDAAHWALTDPAGNPVKLTRAEFELLATFVAHPGQVLTRDQLMN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G       +  ++  + ++R+K+  +      + +   +GY  
Sbjct: 186 HV-GRRGHETFDRTIDVLVRRIRRKIEADPSDPRLIVTVHGIGYVF 230


>gi|163761582|ref|ZP_02168653.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
 gi|162281178|gb|EDQ31478.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       D G  +                  D+  I+      GE  L
Sbjct: 13  LLVVDDDTRIRDLLSRYLTDQGFRVTTAADASEARRKLEGIDFDLLVIDVM--MPGESGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R +R    VP++ ++        +D  ++G DD + KP + R     I   +    +
Sbjct: 71  SLTRSLREIKTVPILMLTALAEGDARIDGLEAGADDYLAKPFNPRELVLRINNILKRGGQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       R+ +  GE   L  RER I+     N G+ V + ++    
Sbjct: 131 PGVPKIEQVVFGPYTFVLARRELKKSGEQVRLTDREREIMVTFAENAGETVPRHELA--- 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  + E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 188 --GGDTEIGERTIDVQINRLRRKIEDDPANPIWLQTVRGIGYRL 229


>gi|160894924|ref|ZP_02075698.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
 gi|156863355|gb|EDO56786.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +G +    +  ++       +    L      D++ ++  L   G    
Sbjct: 9   ILLVEDEAGIAEGIMDYMKESEITFTWAADGDEALALVYEHEYDLALLDVML--PGADGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA S VP+I ++     +  L  +D G DD V KP    E+ A++ +  RR K 
Sbjct: 67  EICRAIRAKSYVPIIFLTARGREEDRLYGYDLGCDDYVVKPFSMAELQAKIQSFLRRSKG 126

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N   + G I+++ D    E  GE   L  +E  +L+YLM ++G  V +  +   ++
Sbjct: 127 LWTKNQVIQVGDIKMYPDRLLVEAAGEEVRLAPKEYAMLKYLMEHKGMIVTRDDMLVRLW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D    + VV++H+ KLRK L +      + +    GY ++
Sbjct: 187 G-YDYDGGDRVVDNHVKKLRKALGDSG--KLIKTVFAKGYRME 226


>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
 gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
          Length = 237

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 218

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + D                 +      L      D+  ++           E
Sbjct: 1   MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKESFDLVLLDIM--MPDMDGWE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++     +  +     G DD + KP    E+         R    
Sbjct: 59  VCRDIRKFSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEEL-LARMEAVLRRSAP 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R E   +    +G +   + +   L  +E  +L  LM N  K   + ++   ++G +D
Sbjct: 118 ARRIEFRGLLWDEEGFELSYEQKSIRLTPKEFSMLGLLMKNPNKVFERDRLLELVWG-YD 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
              E   V+SH+  +R+K+R       D   +   +GY 
Sbjct: 177 SETEGRTVDSHVRNIREKVRQAGFPVDDHFLTVWGIGYK 215


>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +       + G S    ++              +  ++  L    G  +
Sbjct: 24  ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 83

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  R   Q+ +I ++     +  +   D+G DD + KP   RE+ AR+ A    + 
Sbjct: 84  LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      GPI +        + G    +   E ++L++ +A+  +  +++Q+   ++
Sbjct: 144 PEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ H+ +LRK LR+      + + R +GY +
Sbjct: 204 GDH-VVIEERTVDVHVLRLRKALRDAEY--LIKTVRSVGYML 242


>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
 gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + +    +  +   D+S I   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDGM 64

Query: 62  ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E+ + +R       ++VP++ ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  EVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124

Query: 117 RRLKVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N           G + V+ D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
 gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++G   L   +   +    +         +   D+  ++      G   L
Sbjct: 6   ILIIEDDYDIREGIRILLESENYEVIEAENGMTGLEKLDTLM-DLVILDIM--MPGMSGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110
                IR  S +P++ ++        L    +G DD + KP  + E+             
Sbjct: 63  RTCEEIRKVSFLPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKALVRRYRE 122

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +   E G I++     +  V G+   L   E  IL  +M N  K  + 
Sbjct: 123 YQGKPSESNDKESPYIEIGGIKIHQQFNEVLVNGKEKELSDIEYNILLLMMQNSKKIFSA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++ +++         + V  HI KLR K+  N      + +    GY  D 
Sbjct: 183 QNLYESVWKEPYFYSCNSTVMVHIRKLRVKIESNPQDPKYIKTIWGKGYKFDV 235


>gi|251790803|ref|YP_003005524.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539424|gb|ACT08045.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A       A    D   +           +   A+  +  ++  L   G    
Sbjct: 6   ILIIEDDADAASVLEAYLKRDNFQVLLARDGVSGLEMALRAKPALILLDVML--PGMNGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP+I ++        +     G DD V KP H  E++ARV A+ RR   
Sbjct: 64  EVLAALRRKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTCG 123

Query: 122 SNNRAETGPIRVFSDGRDPE--------VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +               +D                 L   E  +L  ++  + +  ++ ++
Sbjct: 124 AMTPGRPLSFGPLVVDQDAMLAAVTDAQGDSRPLDLTPTEFSLLTTMLRAQTRAFSRQEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A   L D    E VV++HI  LRKKL      D + + R +GY  
Sbjct: 184 LEAC--LPDSDALERVVDTHIYNLRKKLEAVGIGDVLLTVRAVGYRF 228


>gi|114705837|ref|ZP_01438740.1| transcriptional regulator [Fulvimarina pelagi HTCC2506]
 gi|114538683|gb|EAU41804.1| transcriptional regulator [Fulvimarina pelagi HTCC2506]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 88/225 (39%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++             +   +       +      D+  ++      GE  L
Sbjct: 19  ILIVDDDRRIRSLLSRFLTSKRFRVSTASDAAEARRILGGLDFDLMIVDVM--MPGENGL 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           +L R +R     P++ ++    + + ++  ++GVDD + KP   R     +   +     
Sbjct: 77  DLVRSLRQTRDCPILMLTARSEIDSRIEGLEAGVDDYLAKPFDPRELLLRLNNILKRGAG 136

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  V+      GP       R+ +  GE+  L  RE+ I+    A  G+ V +  +    
Sbjct: 137 QTPVTIETVCFGPFAFNLSRRELKRGGEIVRLTDREQDIMAQFAAKPGETVPRLDLL--- 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               +  + E  ++  I++LR+K+  +      + + R +GY ++
Sbjct: 194 --GEENEIGERTIDVQINRLRRKIEPDPGNPLWLQTVRGVGYRLN 236


>gi|307128989|ref|YP_003881005.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
 gi|306526518|gb|ADM96448.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   D       + G +++   +     +       D   ++  L   G    
Sbjct: 3   ILVIEDDAGTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHGYDAIILDVML--PGLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+  + RR  V
Sbjct: 61  QIIEMLRKKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRMRTLLRRGAV 120

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                            R    Q    PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYVVADLQLDVLRRKATRQDTAIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDVKLIHTVRGIGYVCE 220


>gi|290962001|ref|YP_003493183.1| two component positive transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260651527|emb|CBG74650.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +    +++           ++  ++  L       +
Sbjct: 19  LLVVDDEPAILDTVGRFLRFIGYEVRTAATVKEALAEARDHLPELILLDIML--PDGDGI 76

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R +RA      ++ ++   + +  +    +G DD V KP    E    +  V    R
Sbjct: 77  EVMRRLRADGLPHAVVFLTARDTRKDLVKALAAGGDDYVTKPFGLDEVAARIGAVLRRTR 136

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R +  ++      + +          G    L   E R+L YLM + G+ V + Q+   +
Sbjct: 137 RPEHESSVLRVADLELDPATHSVRRGGTAIGLSPTEFRLLRYLMLHSGRIVPRAQLLEHV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++ VV ++IS LR+KL + LG   + ++R +GY+I
Sbjct: 197 WS-YDFNGDDTVVATYISYLRRKL-DALGPPLIHTQRGIGYAI 237


>gi|255314146|ref|ZP_05355729.1| two-component response regulator [Clostridium difficile QCD-76w55]
          Length = 234

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 4   LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTL--PDGTGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 62  ELCKYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 121

Query: 122 SNNRAETGPIRVFSDGR----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +                     +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 122 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 182 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 224


>gi|253689068|ref|YP_003018258.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755646|gb|ACT13722.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D         A    DG  +   +  +    +  +++ D+  ++  L        E
Sbjct: 7   LIIEDDMDAASVLEAYLRRDGYQVSIASDGQKGLHMALTSKPDLILLDVML--PKMNGSE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R  S +P+I ++        +     G DD V KP + +E++ARV A+ RR   +
Sbjct: 65  VLSALRQRSNIPVIMVTAIGDEPERIGALRYGADDYVVKPYNPQEVVARVQAVLRRTGYA 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQIF 174
                       S                         E  IL  L+    +   + ++ 
Sbjct: 125 IREEAILTFENLSVDPSSVTASIALSPSESVVLDLTPTEFNILVTLLKAPNRAFTRGELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L +    E VV++H+  LRKKL      + + + R +GY  
Sbjct: 185 EA--SLPESDALERVVDTHVHNLRKKLNQHNIINVLVTVRSVGYRF 228


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E                 D   ++  L   G   LE
Sbjct: 8   LIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLML--PGVDGLE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDA 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           + +    R+  V   +  L  RE  +L +   + GK  ++  + 
Sbjct: 126 LARNARLESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVEADPAEPRRILTVWGRGYKL 231


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|167766491|ref|ZP_02438544.1| hypothetical protein CLOSS21_00997 [Clostridium sp. SS2/1]
 gi|317499514|ref|ZP_07957778.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711900|gb|EDS22479.1| hypothetical protein CLOSS21_00997 [Clostridium sp. SS2/1]
 gi|316893168|gb|EFV15386.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 217

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D  ++++G      + G ++             +S   D++ +   +       L
Sbjct: 3   ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ A+ ++   
Sbjct: 60  EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDALIKKNYG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++   
Sbjct: 120 HLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 180 EEIPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215


>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
 gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
 gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 244

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 12  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 70  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 130 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 190 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 237


>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D     F + G +       E    L  +   DV  I+          L
Sbjct: 20  ILVIEDDREAADYLQKAFAEAGHTAHVAGDGETGFALADAGDYDVMVIDRM--MPRRDGL 77

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 198 D-YHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYML 238


>gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++   +   G +G  +E   S    +        D+  ++  L   GE  L 
Sbjct: 7   LLVEDDRDIRSLLVDFLGGEGYDVEAVGSGALMDRALMRGMPDLVILDIML--PGEDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVAA 114
           + R +R  S+VP++ ++        +   + G DD + KP + RE        +      
Sbjct: 65  ICRRLRTKSRVPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRRASGP 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   +     R   G +         +  G+   L   E  +L   +   G+ +++ Q+ 
Sbjct: 125 LSAGVPERRRRRFAGLVADLDARTVVDDGGQRVNLTTAEFDLLTCFLERPGRVLSRDQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
               G       +  ++  +S+LR KL   +G    P+ + R +GY  
Sbjct: 185 DWTRGRAGGDPFDRTIDVTVSRLRGKLSRCIGEAEQPITTVRNVGYLF 232


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|170759358|ref|YP_001786783.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406347|gb|ACA54758.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         +         +  +  ++  L        
Sbjct: 5   IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEMEKPSLILLDVNL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
              R IR  S  P+I IS   S    +   +SG DD + KP ++       +  L RV  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y          +   +  + +        +   L ++E  +L+ +M    K   + ++ 
Sbjct: 123 DYAANSKVERILDVEGLLFYPERLQANFNEKETMLSKKEGDLLDEMMKIYPKVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+      V+EN +  +I++LRKKL +    D +++ R  GY ++ 
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNV 229


>gi|115358458|ref|YP_775596.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|170703849|ref|ZP_02894543.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|171317815|ref|ZP_02906995.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|172063215|ref|YP_001810866.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|115283746|gb|ABI89262.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
 gi|170131242|gb|EDS99875.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|171097039|gb|EDT41896.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171995732|gb|ACB66650.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAIEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFAEKLLHTIRGMGYVLE 220


>gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  L+ +G        G +++ F   +       SA  D   ++  L    G  V
Sbjct: 3   ILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKIGLEAAQSAPYDAVVLDLTLPKMDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R       VP++ ++   ++   +     G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LQAWRQ--KGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRRY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N      +  F   +       +   L  RE ++LE  M N+ + +++  I   +Y 
Sbjct: 121 GHANPVIQHSLVRFEPNQRKVFLCDQEISLTTREYKLLELFMLNKERVLSRNFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D  V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDNEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 138 QHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 236


>gi|251797251|ref|YP_003011982.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544877|gb|ACT01896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G ++      E         + DV  ++           E
Sbjct: 4   LVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIM--MPKMNGYE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114
           + R +    +  ++ ++    +   +   + G DD + KP   RE+              
Sbjct: 62  VFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHFT 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++  ++     E G + +    R   + G+   L  +E  +L  L  N  +  ++  + 
Sbjct: 122 TFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++ +   A     V+ HI +LRKKL    G   + +   +GY  
Sbjct: 182 KKVWDIH-YAGGTRTVDIHIQRLRKKLGRWHG--LIQTINGIGYKF 224


>gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1]
 gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1]
          Length = 227

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +        +G +L   ++           +  +  ++  +    G + 
Sbjct: 8   ILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKKIKPHLIIMDVMMPEMDGIEA 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R   + +   +  ++      + +  FD+G DD + KPI  + ++++V       +
Sbjct: 68  CENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRRLK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G I +  +    E +G    LPR+E  +L  L +   K   + +I   +
Sbjct: 128 SEDENAQILTVGNIVINREEYKIEKEGVEIILPRKEFELLSLLASRPEKVFKREEILDKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G  +  V    ++ HI KLR+K+      +   + + +GY 
Sbjct: 188 WGN-EVIVGGRTIDVHIRKLREKIGE----NHFKTVKGVGYK 224


>gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
 gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G ++    +       +   + D+  ++           
Sbjct: 20  ILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALK-EVEKKPDIILLDVN--MPDIDGF 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   IR +   P+I ++        +  F  G DD V KP    E    +A      +R
Sbjct: 77  TVCERIRDYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRREKR 136

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S+       + +    R      +     ++E  I+ +L  N+G    +  I+  ++
Sbjct: 137 HNISSKVQFDEDMVIDYSSRIVFYHNKDMAFTKKEFDIISFLSQNKGIVFDRETIYEKVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL D   +  VV  HI ++R K  +      +++    GY 
Sbjct: 197 GL-DGIGDNTVVTEHIRRIRAKFLSLGDRPYIETVWGCGYR 236


>gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +        +G +++  N        L+     D+  ++  L       
Sbjct: 10  LLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNL--PDFTG 67

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVA 113
           L++ R IR+    VP++ ++ Y  ++  ++  D+GVDD + KP    E+L       R +
Sbjct: 68  LDICRRIRSTGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRRS 127

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +      +    G + +     D         L  +E ++L +LM +  K  ++ +I
Sbjct: 128 NALQPQASEPDVLRIGDLELNQANHDVRRGSRSIQLSNKEYQLLVFLMRSPNKVQSRLEI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G      ++N+++ +I  LR+K+ +      + + R +G+ +
Sbjct: 188 LHGVWGES-FYGDDNLLDVYIRYLRQKVESPDEPKLIHTVRGVGFMM 233


>gi|153954940|ref|YP_001395705.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347798|gb|EDK34334.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G       S    +        ++  ++  L   G    
Sbjct: 6   ILIVEDDNDINKILELIVKEQGYKATCCFSGTEAQLRLQQQSFNLILLDIML--PGLTGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL R IR  S +P+I IS    ++  ++    G DD + KP    E+     V      L
Sbjct: 64  ELLREIRKQSSIPVIIISAKSIIEDKVNLLKLGADDYMVKPFAREEVAARIEVQLRKNYL 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +      + +        V+     L   E  IL+ ++ +  +  +K +++  ++ 
Sbjct: 124 QQTGDCLSWKELTLDESQHRVMVKKSELNLTNVEFDILKIMLRHPKQVFSKAKLYELLWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +N +  H+S +RKK+      + + +   +G+S+
Sbjct: 184 DI-YQGNDNSISVHVSNIRKKISAITSEEYIKTIWGIGFSL 223


>gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +          +G  +    +             D   ++      G   
Sbjct: 12  LILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKVREDMPDAVLLDIM--MPGLDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            E  R +R  S +P+I ++        +   + G DD + KP  HRE+++R         
Sbjct: 70  YETLRRLREFSSIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRRHY 129

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +       + V  D R+  V GE   L   E R+L +L+ N G  +    + +
Sbjct: 130 VTPTQAVSTTKIDDRLTVDFDRREVLVNGERISLRPTEYRLLYHLVQNAGFVMPHETLLA 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G      E + +  +++ LR+K+  +      + ++R +GY  
Sbjct: 190 KVWGPEYRD-ESHYLRLYVTYLRQKIEEDPANPHYILTERGVGYRF 234


>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|90423380|ref|YP_531750.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105394|gb|ABD87431.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD  + ++   A    +G  +     +     +    + D+  ++  L   G+  L
Sbjct: 7   LVVVDDEPVARESLAAYLEREGFRVTMAEDIRGLRGVLEHQKVDLVLLDIRL--PGQDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +R+ S +P+I ++        +   + G DD V KP  HRE+LARV  + RR   
Sbjct: 65  SFLRELRSRSNLPVIFVTGRVDEIDRVLGLELGADDYVTKPFGHRELLARVRTLLRRTSE 124

Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S         R F       S     +  GE   L R E  IL  L+   G+ +++  + 
Sbjct: 125 SYRLEHNNLARHFAGWTLDLSQRCLTDAHGEDVRLTRGEFDILAALVRRPGQVLSRDALL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                  D A  +  V+  I++LR+K+         + ++  LGY  
Sbjct: 185 DE-SVHRDGAPNDRTVDVLIARLRRKIETDPAIPRLIITEHGLGYRF 230


>gi|325662457|ref|ZP_08151063.1| hypothetical protein HMPREF0490_01803 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471291|gb|EGC74515.1| hypothetical protein HMPREF0490_01803 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F     ++    +        S    D+  ++      G   +
Sbjct: 5   ILIVDDDRELLKMLHRYFTLKNYTIITAENGVEALEKISVN-PDIILLDVN--MPGIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++     Q  +    SG DD V KP   +E+ AR+ A  +R + 
Sbjct: 62  EVCRRIRDIVSCPIIFLTAKVEEQDRVIGLLSGGDDYVLKPFSLKELDARIFAHLKREER 121

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + E        +    +  +++GE     + E +I+E+L  N      K +I+  I 
Sbjct: 122 LHRKTEQRFYGDLIIDYVSKHVQIKGEELEFTKLEYQIIEFLSMNPEMVFDKERIYEKIR 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +  VV   I ++RKKL+     + +++   +GY 
Sbjct: 182 G-YDAEGDSRVVTELIRRIRKKLKQYTEHEYIETIWGIGYK 221


>gi|325273594|ref|ZP_08139816.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324101272|gb|EGB98896.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   +       + G  ++  ++      L       +  ++  L        +
Sbjct: 4   LVVEDEAKTAEYLQQGLTESGYIVDRASNGVDALHLFQHNTYGLVILDVNL--PKVDGWD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           +   IR  S+V +I ++    L   L   D G DD + KP    E+    R         
Sbjct: 62  VLDTIRKTSRVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDKV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +       + +               L  +E  +L  LM++ G+ + ++QI S ++ +
Sbjct: 122 VDHPTLRVADLELDPGRHRAFRGDLRVELTTKEFALLRLLMSHPGEALTRSQIISLVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NV++  I +LR K+ +      + + R +GY I+ 
Sbjct: 182 -NFDCDTNVIDVAIRRLRAKIDDPFENKLIHTLRGVGYVIEE 222


>gi|319936682|ref|ZP_08011095.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
 gi|319808239|gb|EFW04804.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 91/220 (41%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G  +   +  +    L ++   D++ ++  L        
Sbjct: 4   ILLVEDDINIINHLSSFLEKEGFLITHVDGQKKAINLINNQHFDLAILDISLK--EGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+++  +P++ ++      + +   + G DD ++KP   RE+L+R+  I RR   
Sbjct: 62  SLYNEIKSYKDIPIVFLTANQDEFSVVTGLNLGADDYISKPFRPRELLSRIQNILRRYHK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   I+V               L   E R+L    +   + + +  +   I+ + 
Sbjct: 122 QETFYQYQNIKVNPLTGKVFKDNYEIFLSALEYRLLLIFFSYPNQLLTREFLLEEIWNIT 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  ++ ++R K+ +     + + + R LGY +
Sbjct: 182 GEDVSDNTLSVYMKRIRNKIEDNPQNPNIIKTMRGLGYKL 221


>gi|297156215|gb|ADI05927.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++  +       +          ++  L   G    
Sbjct: 3   LLVVEDEEGLAIALKRGLEAAGYAVDVAHDGLIGLHMARQNPYQAIVLDIML--PGLNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +   +RA     P++ ++         +  D+G DD + KP  +  + AR+ A + R  
Sbjct: 61  RVCARLRAEDIETPILMLTAKNGEYDEAEALDTGADDFLAKPFSYVVLEARLRALLRRGG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +   GR        F L  +E  +LE L    G+ V K  I   ++ 
Sbjct: 121 ARTRTVLRIGDLWIDPAGRSSGRGDVQFRLTAKEFAVLECLARRAGEVVPKIDIVDQVWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N+VE ++S LR+K+    G   +++ R +GY +
Sbjct: 181 A-DFEGDLNIVEVYVSALRRKIDTPFGRASIETVRGIGYRM 220


>gi|291546029|emb|CBL19137.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G         E  + L    +ED       ++  G+   
Sbjct: 5   ILVIEDDRAISELLCMNLEAAGYETVAAYDGEEAQRLL-LWQEDADLAVVDIMLPGKDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L        ++P++ ++    + + +     G +D + KP    E+L R+  +  R   
Sbjct: 64  ALM-EDFKKKELPVLYLTAKDDVASKVKGLKLGAEDYMVKPFEMLELLVRIEKVLERTGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        I V          G    L   E  +   L+ N+   + + ++   ++G  
Sbjct: 123 AKKVLTVRNILVDMQSHQVYKDGLPVSLKPMEYDLFVLLLQNKNIALGREELLKRVWGE- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   E   V+ HI +LRKKL        + +   LGY ++ 
Sbjct: 182 NYLGESRTVDVHIGQLRKKLELYDE---IRTIPKLGYRLEE 219


>gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126]
 gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + D         G  +   +  +    L      D+   +  +    G   
Sbjct: 5   ILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMDGYDF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   + I      P +  +   S Q  +     G DD + KP   RE++ RV  I RRL 
Sbjct: 65  ISEVQYI--APNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRLS 122

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + E G + +     +  +  +   L  +   +L  L +N  +  +KT+++  ++
Sbjct: 123 RGGETEQIEFGDLVINHVTHEVRLGEQPLELTVKSFELLWVLASNPERVFSKTELYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
              D   + N +  HI  LR+KL          + +   LGY ++ 
Sbjct: 183 -QEDYVDDTNTLNVHIHALRQKLTKYTNSNAPAIKTVWGLGYKMEK 227


>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR+KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLREKLRKVNFPIDHHLKTVYGVGYR 219


>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A + D   A     G+             +  + + D+  ++           +
Sbjct: 17  LIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQTCKPDLLLLDV--QMPQLDGWQ 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114
           +   IRA   +P+I ++        L     G DD V KP +  E+            AA
Sbjct: 75  VLSEIRARGDMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRSQAA 134

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +V         +         + + ++  L   E ++L  LM    +  ++ ++ 
Sbjct: 135 KQATARVLRVGPFQIDLESHEASICRDERQQMLDLTLTEFKLLASLMRTPKRVFSRAELL 194

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    L +   +E  V+SHISKLRKKL  +       S   +GY  
Sbjct: 195 THC--LPEGDTQERTVDSHISKLRKKLEAQGIQGVPASVWGVGYRF 238


>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
 gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L   E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|238797820|ref|ZP_04641313.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
 gi|238718348|gb|EEQ10171.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYIHRALTEQGFTVDIAATGTDGLYLALEYDYDTIVLDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLKGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELIARIQALLRRRPS 120

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADVTQLHINDLHLDLLARRVTRGGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPYSLKLLHTVRGMGYVLE 222


>gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++  +  E   +L ++   D   ++  L       L
Sbjct: 3   LLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATENYDAVVLDLGL--PTIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  +     P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + N +E  ++++RKKL    G D + + R LGYS+D 
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADVITTIRGLGYSLDE 218


>gi|302557635|ref|ZP_07309977.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302475253|gb|EFL38346.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 271

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      N+ E      +  R D+  ++  L        
Sbjct: 48  LLVVDDDPPIADLVATVARYEGWEAVTANTGEDALRRAAEFRPDIVVLDLML--PDVDGF 105

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    + P++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 106 GVLDRLRRSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 165

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G + +  D R+    G    L   E  +L YLM      + K QI   +
Sbjct: 166 GPGFQRSVLRVGDLTMDEDTREVRRGGRTLSLTPTEYEVLRYLMRRSPTVLTKAQILDHV 225

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL +      + + R  GY I
Sbjct: 226 W-EYGFGGRSNVVELVVSRLRRKLDDTGEP-LIQTVRGFGYVI 266


>gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 222

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +       +     +  N+    E +  S   D+  ++  +   G   L
Sbjct: 3   ILVIEDDPTVGEFVRRGLEEQRWQTDLCNNGLEGERMALSQPYDLVILD--MRLPGRNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119
           ++ R +R+     P++ ++   ++   ++   +G DD V KP    E+     A + R  
Sbjct: 61  DVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEALLRRPR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++ +   G + +    R+    GE+  L  +E  +LEYLM + G+ +++T I    +G
Sbjct: 121 ALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLITEYAWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+V+  I+ LRKK+  +     + + R +GY I
Sbjct: 181 -YHFDPGTNIVDVVINHLRKKIDARFDKKLITTVRGVGYMI 220


>gi|163745287|ref|ZP_02152647.1| DNA-binding response regulator PetR [Oceanibulbus indolifex HEL-45]
 gi|161382105|gb|EDQ06514.1| DNA-binding response regulator PetR [Oceanibulbus indolifex HEL-45]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +           + +    D+  ++      GE  +
Sbjct: 8   LLVVDDDERIRSLLRKFLMRHGFLVSTARDAAHARRVLAGLEFDLIVLDVM--MPGEDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R   Q P++ ++        ++  ++G DD + KP   +E+L R+ AI RR+  
Sbjct: 66  ELTRSLRETLQTPILLLTAKGETDNRIEGLEAGADDYLPKPFEPKELLLRINAILRRMPD 125

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++             IR   +  +     E+  L   E  +++   A  G  +++ ++  
Sbjct: 126 TSAADTAPKVLSLGVIRYDMERGEMWQGDELVRLTATEVHLMKIFSAQPGVALSRAKLVE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G      +E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 EL-GRDRGQAQERAVDVQITRLRRKIESDPKQPQYLQTVRGAGYML 230


>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIKAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
 gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + +   L   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIVFGRFKLNLGTREMFREDQPMSLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVF 232


>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
           [Mycobacterium intracellulare ATCC 13950]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD + V           G  +             +  R D   ++  +    G  V+
Sbjct: 1   MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
              R +   + VP+  +S   S+   +   ++G DD + KP         + A +     
Sbjct: 61  TALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGA 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+     GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   +
Sbjct: 119 TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D A + NVV+  I  LR+KL    G   + + R +G+ +
Sbjct: 179 WG-YDFAADTNVVDVFIGYLRRKLEAHGGPRLLHTVRGVGFVL 220


>gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 685

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++    +        +++  +   F      SA  D+  ++  L       +
Sbjct: 3   ILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGL--PRLDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ ++   +    +   D+G DD + KP+   E+ AR+ A+ RR +
Sbjct: 61  SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           VS           +     +         L  +E  +LE  + N  +  +++ I   ++ 
Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  +E+  V++H+  LR++L+       +++   +GY +
Sbjct: 181 FDDPPLED-SVKAHVKGLRRRLKQAGADGWIENVYGMGYKL 220



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD  ++      L    G S+             +    D+  ++  + G     +
Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGP--DGI 460

Query: 62  ELPRIIRAHS 71
           EL   +R   
Sbjct: 461 ELCHAVRNDP 470


>gi|166030722|ref|ZP_02233551.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
 gi|166029514|gb|EDR48271.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
          Length = 220

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KLNMEELHRYDLILLDIM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWEE 220


>gi|307325941|ref|ZP_07605140.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888433|gb|EFN19420.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 244

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           +  + R D   ++  L       L 
Sbjct: 21  LVVDDEPDLTEVLSGALRYEGWEVRTAADGASALDVARAFRPDAVVLDWML--PDTDGLA 78

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    V ++ ++   +++  +    +G DD V KP    E+LAR+  + RR  +
Sbjct: 79  VLRAVRAELPDVCVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVLARLRGLLRRAGM 138

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +       + +    R+    G    L R E  +L +LM N  + ++K QI   +
Sbjct: 139 AREPGDDRLVVADLVMDEQAREVTRGGVAVELSRTEFELLRFLMRNPRRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + +VVE +IS LRKK+ +      + + R +GY +
Sbjct: 199 WS-YDFGGQAHVVELYISYLRKKI-DAGRAPLIHTVRGVGYVL 239


>gi|290473269|ref|YP_003466135.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289172568|emb|CBJ79337.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLSEQGFQVRSVANAEQMDRLLTRESIQLIILDLML--PGEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R  H+ +P+I +S        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQHNPIPIIMVSAKGEEVDRIVGLEIGADDYLVKPFNPRELLARMRAVMRRQS 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N   + G  ++    R+   + E   L   E  +L+ L+++  + +++ +
Sbjct: 125 HELPGAPTPDNAVVKFGKFKLDLGTREMFHEDEQLSLTSGEFSVLKVLVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + S   G  +    E  ++  +S+LR+ +         + +   LGY  
Sbjct: 185 LMSLARGR-EYGAMERSIDVQVSRLRRLIEEDPAHPRYIQTVWGLGYVF 232


>gi|90418271|ref|ZP_01226183.1| response regulator receiver, transcriptional regulatory protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337943|gb|EAS51594.1| response regulator receiver, transcriptional regulatory protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 246

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 86/225 (38%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++   +    +    +           +      D+  ++      GE  +
Sbjct: 27  ILVIDDDRRIRSLLLRFLSEQQFRVSVAADAAEARRILEGLDFDLLVVDVM--MPGESGI 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           EL R +R + Q P++ ++     +  ++  ++G DD + KP   R     +   +    +
Sbjct: 85  ELVRSLRTNRQAPVLMLTARSETEHRIEGLEAGADDYLAKPFDPRELLLRVNNILRRGSQ 144

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP        + +  GE+  L  RE+ ++     N G+ + +  +    
Sbjct: 145 APIQKLEHIRFGPFTFSLSRCELKRGGEIIRLTDREKAMMSQFAGNPGETIPRQDLL--- 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               +  V E  V+  I++LR+K+  +      + + R +GY ++
Sbjct: 202 --GDETEVGERTVDVQINRLRRKIEGDPANPLWLQTVRGIGYRLN 244


>gi|47568009|ref|ZP_00238715.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|229099317|ref|ZP_04230248.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229105475|ref|ZP_04236117.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|229118328|ref|ZP_04247684.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|301056347|ref|YP_003794558.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47555312|gb|EAL13657.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|228665158|gb|EEL20644.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228677942|gb|EEL32177.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228684135|gb|EEL38082.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|300378516|gb|ADK07420.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYDAVVTENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  I      G  +    + E    L  S   ++      ++  G    
Sbjct: 5   ILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGIDGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +R  S+   +I ++        +     G DD V KP    E++ARV A+YRR  
Sbjct: 65  AVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALYRRLN 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   N   +G   + +  R    +G+   L + E +I++Y + N    +++  I 
Sbjct: 125 LEAGEKEDENGIVSGDFVLNTKSRTFYRRGQPIELTQMEYQIMKYFLENPDTALSRGDIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           + ++G  D   E  +V+ +I +LR K+  +      + +    GY 
Sbjct: 185 NHVWGE-DYFGELKIVDVNIRRLRMKVEEDPSAPRHILTVWGFGYK 229


>gi|304318103|ref|YP_003853248.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779605|gb|ADL70164.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +IDD   ++D  +     +G +++ F++ E      +  + D+  ++      G   
Sbjct: 4   LIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIM--MPGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118
            EL + IR  S VP+I +S        +   + G DD +             +      +
Sbjct: 62  YELCKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +N      I +  D R     GE       E  ++++L  N  K   + Q+   ++
Sbjct: 122 MPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   E   V+  + ++RKKL++      + +    GY ++
Sbjct: 182 -KYDSFTETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVE 223


>gi|209963769|ref|YP_002296684.1| KDP operon transcriptional regulatory protein KdpE [Rhodospirillum
           centenum SW]
 gi|209957235|gb|ACI97871.1| KDP operon transcriptional regulatory protein KdpE [Rhodospirillum
           centenum SW]
          Length = 227

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G ++    +      L  +   D+  ++  L        
Sbjct: 4   ILVVDDEAQIRRFLRISLAANGHAVLEAETGAEAVALVRAEAPDLVILDLGL--PDMDGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+   IR   +VP++ +S        ++  D G +D V KP    E++ARV         
Sbjct: 62  EVVSAIREIGRVPILVLSVRTGETDKVEALDRGAEDYVAKPFGIAELMARVRVALRRAPQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +  D R  E  G    L RRE+ +L  L  +    +   QI   ++G
Sbjct: 122 DPRPAVVVAGGVMIDLDRRVVERDGGEVRLSRREQDLLFVLARSADHVLTHQQILREVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 +   +  ++++LR+KL  +      + ++  +GY +
Sbjct: 182 PAHVE-DTAYLRVYVNQLRQKLEPDPGQPALIVTEPGVGYRL 222


>gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVML--PGLDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSGSH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + + G + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPLQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  + E      S A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMI--PGIDGLQ 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
 gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++  +    ++G         E    L  +   D+  ++  L         
Sbjct: 9   LVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSVDLVILDIVL--PKVDGWS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S +P+I ++       +L  ++ G DD + KP   R ++A+V     +   +
Sbjct: 67  VCRRIRRNSGIPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFLEKTSDT 126

Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     +  +   R   V+G+   L   E  IL YLM N+G  + + Q+ + ++G 
Sbjct: 127 VEEMQISAGGILLNLGSRCVSVEGDPINLTHTEFEILAYLMQNKGLVITREQLITKLWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   +E  V SHI  LR KL +K     + +    GY  
Sbjct: 186 YDFYGDEKTVNSHIRNLRSKLGSKGSS--IVTVIRSGYKF 223


>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
 gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
 gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
 gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
 gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
 gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
 gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
 gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. W3110]
 gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
 gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
 gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
 gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
 gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
 gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
 gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
 gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
 gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
 gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
 gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
 gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
 gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
 gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
 gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
 gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
 gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
 gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
 gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
 gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
 gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
 gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
 gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
 gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
 gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
 gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
 gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
 gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
 gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
 gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
 gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
 gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
           and ompF: outer membrane protein synthesis [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
 gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
 gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
 gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
 gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
 gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
 gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
 gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
 gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
           [Shigella dysenteriae Sd197]
 gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
 gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K12 substr. W3110]
 gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
 gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
 gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
 gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
 gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
 gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
 gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
 gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
           3083-94]
 gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
           Et1/99]
 gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
 gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
 gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
 gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
 gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
 gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
 gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli 55989]
 gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia fergusonii ATCC 35469]
 gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI1]
 gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli S88]
 gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI39]
 gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli ED1a]
 gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli UMN026]
 gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
 gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
 gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli O157:H7 str. TW14359]
 gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
 gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
 gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
           12163]
 gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
 gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
 gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
 gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
 gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
 gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
 gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
 gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
           83972]
 gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
 gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
 gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
           BAA-2158]
 gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
           2457T]
 gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli W]
 gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
 gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
 gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
 gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
 gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
 gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
 gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
           CDC 74-1112]
 gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
           796-83]
 gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
           WV_060327]
 gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
           EC4100B]
 gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
           493-89]
 gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
           2687]
 gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           LSU-61]
 gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
 gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
 gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
 gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
 gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
 gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
 gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
 gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
 gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
 gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
 gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1044]
 gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1125]
 gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
 gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
 gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
           AA86]
 gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
 gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
           155-74]
 gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
 gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
 gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
 gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
 gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
 gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
 gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
 gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
 gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
 gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
 gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
 gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
          Length = 260

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D       ++G  +    + E    L    R D   ++      GE  +
Sbjct: 22  ILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVM--MPGEDGI 79

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IRA +   P++ ++        +   + G DD + KP + RE+LAR+ AI RR +
Sbjct: 80  SILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRRE 139

Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +              G   +    R      E  PL   E  +L+    +    +++ 
Sbjct: 140 PVDPPGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTGEFAVLKTFARHPRVPLSRD 199

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   LGY  
Sbjct: 200 KLMEMARGR-EYEAFDRSLDVQVSRLRKIIEPDPSKPRYLQTVWGLGYVF 248


>gi|312863892|ref|ZP_07724130.1| response regulator protein GraR [Streptococcus vestibularis F0396]
 gi|311101428|gb|EFQ59633.1| response regulator protein GraR [Streptococcus vestibularis F0396]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++
Sbjct: 122 FGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      D +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGY 220


>gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130]
 gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130]
          Length = 246

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++       + G  +   +              D+  ++      GE+  
Sbjct: 27  ILVVDDDSRIRELLTRYLAEQGFRVSSASDASEARRQLQGLSFDLLIVDVM--MPGERGT 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           +  R IR    VP++ ++      + +   ++G DD + KP   R     I A +  +  
Sbjct: 85  DFTRSIREDLDVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAILKRVQT 144

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       R+ + +GEV  L  RER I+     + G  V + ++    
Sbjct: 145 EELPGIEQVMFGPYTFSIPSRELKCKGEVVKLTDREREIMVLFAQSAGDVVPRMELV--- 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D    E  V+  I++LR+K+  +    + + + R +GY +
Sbjct: 202 --GEDTGANERTVDVQINRLRRKIESDPGNPNWLQTVRGIGYKL 243


>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIM--MPTMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGY 218
           +   E+  V+SHI  LR KLR       D + +   +GY
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGY 235


>gi|134101321|ref|YP_001106982.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008141|ref|ZP_06566114.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913944|emb|CAM04057.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 3/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++   A     G ++E        E +  + R DV  ++  L   G     
Sbjct: 6   LVVEDSAPIREAVAAGLRTAGHTVELRPDGRGVEEVVRTFRPDVVVLDLML--PGRDGFA 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R+ + + ++ ++   S+   L    SG DD V KP    E++ARV A+ RR+   
Sbjct: 64  VLETLRSGADLGVVILTARDSVPDRLRGLRSGADDYVVKPFDTAELVARVEAVLRRMGRV 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   + +  D       G V  L   E R+L YL+A RG+ V+K QIF+ ++G   
Sbjct: 124 AATVEVDDLVIDQDAGVAVRAGSVLALTATEWRLLCYLVAQRGRVVSKLQIFTGVWGYQS 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V+ N+VE H+S LR+KL    G   V + R  GY++
Sbjct: 184 LDVDLNLVEVHVSALRRKLEQH-GRRLVHTVRGRGYAL 220


>gi|49081822|gb|AAT50311.1| PA0463 [synthetic construct]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGL--PVISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            G+  EA  E  ++SHI  LR KLR      + + + R LGY
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222


>gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  +     +G  +  F   E      +     +  ++  L        
Sbjct: 5   IWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQALAQGEPALIILDVGL--PDINGF 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R + A S   P++ ++        L   + G DD V KP   RE+ ARV  I RRL 
Sbjct: 63  ELCRRLLAQSADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTILRRLH 122

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   RV       D            L R E  +L+ L+   G+  ++ Q+  
Sbjct: 123 KQQRITASATHRVGELVLDEDAATVHYYQRPLALTRYEYLLLKTLLLAPGRVFSRQQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            ++   ++++E   V++HI  LR KLR       P+ + R LGY
Sbjct: 183 VVWAQAEDSLE-RTVDTHIKTLRAKLRAVNAHASPIHTHRGLGY 225


>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|159038478|ref|YP_001537731.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917313|gb|ABV98740.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++         +G  +                  D+  ++      G   L
Sbjct: 12  ILLAEDDPAIRRAVEQSLLLEGYHVVATGDGLEAIAAVRRDNPDLLVLDVM--MPGLDGL 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R++RA     P++ ++    +   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 70  TVCRVLRAQGDWTPILVLTARTQVSDRVAGLDAGADDYLVKPFEPEELLARLRALLRRAG 129

Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S                R+    R     GE   L R E  +LE L+ N G  + +T I
Sbjct: 130 PSTGPDSPAGDELAAAGVRLDLAARRVWRGGEEIILSRTEFDLLELLIRNCGVVLDRTTI 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D       +   I  LR+KL      + + + R +GY++
Sbjct: 190 HDRIWG-YDFGTGSKNLSVFIGYLRRKLARPGAPEIIHTVRGVGYTL 235


>gi|313891105|ref|ZP_07824724.1| putative transcriptional regulatory protein ResD [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120468|gb|EFR43588.1| putative transcriptional regulatory protein ResD [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L DD   ++D        DG  ++ F + +         + D+  ++      G   
Sbjct: 4   LIYLADDEKNIRDLLTPFLEHDGFLVKAFENGDLLYQEFLIKKPDLVILDIM--MPGTDG 61

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           L + + IR   Q  P+I ++   S    +  F+ G DD   KP         + + +   
Sbjct: 62  LTIMKAIREKDQSLPIIMLTARDSDADFITAFNLGTDDYFTKPFSPIKLSLHVKSLLKRT 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       +      + + S+ R   +      L + E  +L  L+   G   ++ ++ S
Sbjct: 122 HALDADKKSTFTYKELSLDSEKRLALLYDNEISLTKTEFDLLLVLIEKPGTAFSREELLS 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  +E   V+  + +LRKKL        +++    G+ +
Sbjct: 182 RIWGFED--IESRAVDDTVKRLRKKLSQHQSPVVIETIWGYGFKL 224


>gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
 gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +    E L      D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYDVRAHATG--AEALADVRGVDLVVLDLGL--PDMDGLD 60

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + R IR+     P++ ++        +   D+G DD V KP    E+LARV A    +  
Sbjct: 61  VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        IR+        V      L  +E  +L  L+   G  VA+  +   ++G
Sbjct: 121 EPAEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +    +  ++ ++  L   G    
Sbjct: 6   ILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIML--PGMSGY 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR       +I +S        +   + G DD + KP + +E++ RV ++ RR+ 
Sbjct: 64  EVCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVN 123

Query: 121 VSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +S  R +          P  +    +      +   +   E  IL+  + N+GK + + +
Sbjct: 124 LSQARPKDDSKENLTDGPFTLDIYAKSFYKNNKEIDVTPTEFTILQNFIKNKGKAMTRDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I +  +G  + + +  +V+ +I ++R K+ +     + +++    GY 
Sbjct: 184 IMTQTWGE-NYSNDTKIVDVNIRRIRAKIEDNPAKPEFIETVWGTGYR 230


>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGL--PEMDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +    RA    +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ + G    V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+ N    D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKIGN----DLIETVRGLGYRM 216


>gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|6117972|gb|AAF03932.1|AF139908_2 LisR [Listeria monocytogenes]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +       N       L  +   D   ++  L       +
Sbjct: 4   ILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLML--PHLNGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   Q P+I I+    L      + +G DD + KP    E+LAR+ ++ RR++ 
Sbjct: 62  EVCRRVRQVKQTPIIMITARDLLSIVYPDWITGADDYIVKPFAIEELLARLRSLLRRVEN 121

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   A+   ++  +     + R  +   E+  L +RE  +L  LM N    + +  + + 
Sbjct: 122 AEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  VE NVV+ ++  LR K+ +      + + R  GY +
Sbjct: 182 VWG-YETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVM 224


>gi|15603241|ref|NP_246315.1| hypothetical protein PM1376 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721749|gb|AAK03460.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   V +    +F + G ++    + +    L  S     S I   LI      L
Sbjct: 11  LLVIDDDVQVCELLTDIFEEHGYTVMTAQTGQQALALLQST-PHFSLIFLDLILPDVNGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ +  P+I +S   S    +   + G DD ++KP + R ++AR     RR + 
Sbjct: 70  ILLQRLKSLTTAPVIMLSGLDSESDIVVGLEMGADDYISKPFYPRVVVARAKVALRRHQP 129

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                                        Q     L + E  +L  L+++  K +++ ++
Sbjct: 130 QPFSTSASHQGFTFHHWVLDTQNRKLYSPQKVDIELTQGEYTLLHALVSHAQKVLSREKL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +       + +  V+  I +LRKK+  N      + + R +GY  
Sbjct: 190 LE-LTHTESLEIFDRTVDVLIMRLRKKIEPNPKAPTYIQTVRGMGYLF 236


>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
 gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 11  ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 68

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 69  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 128

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 129 IELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDK 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 189 LMNMARGR-EYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVF 236


>gi|118578946|ref|YP_900196.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118501656|gb|ABK98138.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      +DG  +  F + E           D+  ++  L   G    
Sbjct: 10  IMLVEDEIHLARGICFNLEEDGCRISHFATGEKALEALQFEHFDLIILDVML--PGMDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
           ++ + +R    +VP++ ++        +   ++G DD + KP +  E           + 
Sbjct: 68  QVCQSVRRMDGRVPILMLTARSEESDRVHGLETGADDYLTKPFNLVEFLLRVKGMLRRSS 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R          G   VF              L   E R+L       G+ + + ++  
Sbjct: 128 WYRPDPVEEGYCFGSNEVFLLSYRARTAQGEIDLTEMEVRVLSIFFQKEGQAIPRGELLQ 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +    E   +++ I +LR+    +        + R +GY  
Sbjct: 188 KVWG-YSSDTETRTLDNFIVRLRRYFEPDPAKPTHFQTVRGVGYRF 232


>gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   + +   +    +G  +E F          +    D+  I+          
Sbjct: 6   LIYIADDEINICNIIKSFLVKEGYDVETFTDGRSILEAFNKKPADLLVIDIM--MPEIDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR  S VP+I +S   +    +     G DD + KP    E++AR+ +I+RR++
Sbjct: 64  FSLCSTIRRQSSVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIE 123

Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     ++             D +  E  G+   L   E  +L YL  N+ + V+++++ 
Sbjct: 124 LDKMHNDSVREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+  VE    +  I +LRKKL +      +++    G+ ++ 
Sbjct: 184 DKVWG-FENYVETRATDDTIKRLRKKLSDSGSSLKIETVWGFGFKVNE 230


>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 246

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +    S           R D   ++  L        +
Sbjct: 23  LVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVML--PDLDGFQ 80

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR       + +
Sbjct: 81  VLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 140

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D  +     ++  L   E  +L YLM N  + ++K QI   
Sbjct: 141 AVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRVLSKAQILDR 200

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 201 VW-NYDFGGQANVVELYISYLRKKI-DAGRAPMIHTLRGAGYVL 242


>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
 gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGTPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 263

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA----REDVSAIEAFLIGKG 57
            ++++D         A    +G  +   ++    +   ++       D+  ++  L   G
Sbjct: 6   ILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWML--PG 63

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAA 114
              + L R +RA  Q +P++ ++   ++   +   ++G DD               R   
Sbjct: 64  IDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALL 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     +     + +  + R     G    L  RE  +L YL  ++G+ V++ Q+ 
Sbjct: 124 RRFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLA 183

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
             I+   + A   +NV++ HI++LR+K+          + + R LGY +
Sbjct: 184 REIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYML 232


>gi|183982311|ref|YP_001850602.1| two-component regulator receiver domain-containing protein
           [Mycobacterium marinum M]
 gi|183175637|gb|ACC40747.1| two-component regulator - receiver domain [Mycobacterium marinum M]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       D G   +  +  E  E +    R D+  ++  L   G     
Sbjct: 30  LVVEDSETIREMVNEALADVGYHTDTRSDGEGLERVLQGLRPDLVVLDVML--PGRDGFA 87

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR    
Sbjct: 88  LIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYVVKPFELAELVSRVGAVLRRRGRL 147

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + + S+       G    L   E R+L++L+  RG+ V+ TQI +A++G   
Sbjct: 148 PRVVQVGDLMLDSEAGVAARDGHQLDLTATELRLLDFLVQQRGRIVSATQILNAVWGYDA 207

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+V+ H+S LR+KL    G   V + R +GY +
Sbjct: 208 Y--DANLVQVHVSSLRRKLEAH-GPRIVQTVRGIGYRL 242


>gi|26990437|ref|NP_745862.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985407|gb|AAN69326.1|AE016570_3 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  LV+D   A    +G  +   ++ E  E L  S   D+  ++  L   G+  L 
Sbjct: 6   LIVDDDPLVRDLLQAYLSREGYDVHCADTAERAEALLGSQDVDLVLLDIRL--PGKDGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S+V +I I+        +   + G DD V KP++ RE+++R   + RR++ +
Sbjct: 64  LTRELRVRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123

Query: 123 NNRAETGPIRVFSDGRDPE-----------VQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                           G    L   E ++L   + N G  +++ 
Sbjct: 124 REAHPAPACAQSLKQFADWALDTDRRRLIDACGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   I    +    +  ++  + +LR+KL  +      + +    GY  
Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD + +         ++G  ++          L    +  V  ++      G    
Sbjct: 9   ILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVM--MPGMDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+   I  +  
Sbjct: 67  EVCRMLKKTENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQFP 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   GP ++    ++ + +  V  L   E  +L++L+ N G  ++KT I   ++G 
Sbjct: 127 NLFGKVVVGPFQIDDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMILDKVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   EEN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 186 YDFGGEENIVEVYIRSLRDKLNDK-NHQIIRTLRRSGYRVD 225


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   +         + R D   ++      G     
Sbjct: 10  LIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVM--MPGMDGFG 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 68  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 127

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+++              D R+    GE   L   E  +L Y M N G  ++K +I + +
Sbjct: 128 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILAHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 188 W-NYDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 228


>gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +   +      +       S   D+  ++  L        
Sbjct: 7   ILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIML--PSMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +   + G DD + KP   RE++ARV A  RR+++
Sbjct: 65  EICKQIRKTKNTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKANVRRVEM 124

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N A      +   I +        V+GE   +  RE  +L++L  +R +  ++ Q+ +
Sbjct: 125 IENSAVASQLLKFKDIEIDVSKYIVRVRGEEIKITFREFELLKFLAQHRDQVYSREQLLT 184

Query: 176 AIYGLFDEAVEE-NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++      V+    V+  + +LR+K+  +    + V +KR +GY  
Sbjct: 185 IVWEYEYIGVDSERTVDVTVRRLREKIEIDPSNPEFVITKRGVGYYF 231


>gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 234

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + +         G ++  F S E        +  D+  ++  L        E+
Sbjct: 8   VVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S VP+I +S        +   + G DD ++KP         I   +  + +  
Sbjct: 66  CKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKGP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  ET  I+V  + R+         L  +E      L+    K + ++ I   I+G
Sbjct: 126 IKQDNVIETFGIKVDFNQRNVFYNDTQIELSPKEFETFALLLKESTKVLKRSYILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  I +LRKK+        + +   LGY I+ 
Sbjct: 186 NPALY-DERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKIEE 227


>gi|294631895|ref|ZP_06710455.1| KDP operon transcriptional regulatory protein KdpE [Streptomyces
           sp. e14]
 gi|292835228|gb|EFF93577.1| KDP operon transcriptional regulatory protein KdpE [Streptomyces
           sp. e14]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L +S   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDAAGDGRTALDLAASRHPDVIVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  ++VP++ +S   S    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGWTRVPILVLSARHSSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     ET    V    +     G+   L   E  +LE L+ N G+ V++ Q+   
Sbjct: 123 GAGDDEVTTVETEQFTVDLAAKKVNRGGKDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++G      E N +  ++++LR+KL  +    +   ++  +GY  + 
Sbjct: 183 VWGPS-YGTETNYLRVYMAQLRRKLEADPSHPEHFVTEPGMGYRFEK 228


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +    +           + D   ++  L         
Sbjct: 25  LVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVML--PDLDGFA 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 83  VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 142

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +        + V       D  +    G++  L   E  +L YLM N  + ++K QI   
Sbjct: 143 AIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 203 VW-NYDFGGQANVVELYISYLRKKI-DAGRAPMIHTLRGAGYVL 244


>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
           'morsitans']
 gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
 gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
 gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G +     S E      +    D+  ++  L       +E
Sbjct: 6   LIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGL--PDMSGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121
           L + IR     P+I ++        +   + G DD V KP   RE+ ARV A+  R    
Sbjct: 64  LCKEIRKSHSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRRTHVR 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +         V    R     G    L R E  IL+  +   G   ++ Q+   ++   
Sbjct: 124 DHCAPTPHVFEVNDSKRRIAYHGRTLDLSRYEYEILKTFIRRPGHIYSRDQLMELVWEQP 183

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           + +++   V++HI  +R KLR      DP+ + R +GYS+  N
Sbjct: 184 ETSLD-RTVDAHIKNIRAKLRVIAPESDPIVTHRGMGYSLREN 225


>gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
 gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  +E   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGL--PGMGGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGYLFNE 222


>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G+ +E  +          S    +  ++  L   G    
Sbjct: 4   ILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVML--PGISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP++ ++        +   + G DD ++KP + RE++AR+ AI RR + 
Sbjct: 62  EVLRRIRAGSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRRAQP 121

Query: 122 SNNRAETG----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S  R               + V         +G    L   E  +LE L+   G+ V++ 
Sbjct: 122 SVERETGTGKAVERVVVGDVEVDPGAHIVLQRGHPVDLTSVEFTMLEVLLRASGQVVSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +     G      +   ++ HIS LR+KL       + + + R +GY
Sbjct: 182 DLAKQALGRRLSPYD-RSIDVHISSLRRKLGHQLGDTERIKTVRGMGY 228


>gi|255655475|ref|ZP_05400884.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451467|ref|ZP_06893204.1| response regulator [Clostridium difficile NAP08]
 gi|296880184|ref|ZP_06904150.1| response regulator [Clostridium difficile NAP07]
 gi|296259734|gb|EFH06592.1| response regulator [Clostridium difficile NAP08]
 gi|296428773|gb|EFH14654.1| response regulator [Clostridium difficile NAP07]
          Length = 241

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 11  LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSLILLDVTL--PDGTGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQ+P+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 69  ELCQYIRGFSQIPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKAN 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   ++             E +         L   E ++L  L+ N+   +++TQI   +
Sbjct: 129 TVEESKKILKFGDLSIYTLEARVYKNDKEVFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R LGY 
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGLGYK 231


>gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 237

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +IDD A +++   A     G  +    + +    L      D+  ++      GE  L L
Sbjct: 10  VIDDDAEIRELLHAYLSQHGFRVVLAENGDAVPSLLRDESPDLLILDIM--MPGEDGLSL 67

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R HS VP+I ++        +   + G DD + KP + RE+LAR+ A+ RR++   
Sbjct: 68  CRDLRRHSNVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLRRMRPLP 127

Query: 124 NRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +                     +  G    L   + ++L   + +  + +++ ++F    
Sbjct: 128 STPSRMVRFGPWCLDRITRELIDDMGNRSRLSGADYQLLGVFLDHPEQVLSRERLFDLSR 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G       +  ++ H+ +LR++L  +      + + R  GY +
Sbjct: 188 GRR-APPLDRSIDVHVCRLRQRLGEDAQHSQLIRTVRGAGYVL 229


>gi|28869448|ref|NP_792067.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852689|gb|AAO55762.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGTEGLTQAALNKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP+ V    R   +      L R+E  +L  L    G+ + + Q+   I+
Sbjct: 125 SDKPESALRFGPLTVDLAYRRVLLDDLEVALTRKEYSVLAQLARYPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHAE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|330504344|ref|YP_004381213.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918630|gb|AEB59461.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 241

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAQLTREYLEGNGLRVAIEADGARAAARILAEQPDLVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R +R   + P++ ++        +   + G DD V KP+  R +LAR+ A+      
Sbjct: 66  SICRKVRGGYKGPILMLTARTDDMDQVLGLEMGADDYVCKPVRPRVLLARIRALLRRREG 125

Query: 117 ---RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               R +    R + G + + S  R+  +  +   L   E  +L  L  N G+ +++ +I
Sbjct: 126 GESERDEGQPRRLQFGALAIDSAMREAWLGEQGIELTSAEFDLLWLLAVNAGRILSREEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F+++ G+ +   ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 FNSLRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRMIKTVRSKGYLF 232


>gi|320449744|ref|YP_004201840.1| phosphate regulon transcriptional regulatory protein PhoB [Thermus
           scotoductus SA-01]
 gi|320149913|gb|ADW21291.1| phosphate regulon transcriptional regulatory protein PhoB [Thermus
           scotoductus SA-01]
          Length = 237

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   V+ G        G  +    + +        A      ++  L    G ++L
Sbjct: 5   LVVEDEPAVRLGVRLALEKAGHRVLEAATSQEAWPRLREAE--AVVLDWMLPDEPGTRLL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R   A+ ++P++ ++    ++  ++    G DD + KP    E+LAR+ A+ RR   
Sbjct: 63  ERMRQ-GAYPELPVLMLTARAEVRDRVEGLSRGADDYLVKPFATEELLARLEALLRRAGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  + ++  + G   PL RRE  +L +L    G+  ++ ++  A++G  
Sbjct: 122 RKVLRRGPL-LLDLERKEANLDGRPLPLTRREFELLAFLAQRPGRVYSREELLEAVWGQ- 179

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           D       V+ H+ +LR+KL  +      +++ R +GY  
Sbjct: 180 DYLGTPRTVDQHVLQLREKLGEDPKAPRFLETVRGMGYRF 219


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
 gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++     +  ++    +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKDLGHQVDSAEDAKEADYFLHESCPDIAVVDLGL--PDEDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R  H  +PL+ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E G   +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     D + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHSDDVIVTVRGQGYRFDVN 223


>gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
 gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D G S+      +            +  ++  L   G    
Sbjct: 4   ILLVEDNEELAGLLRDFLVDRGYSVLRAARGDDAVRYAERGEVRLVLLDIML--PGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
            + R IR    VP++ +S     Q  L  ++ G DD +                      
Sbjct: 62  AVCRQIRKSQNVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKRSGR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G I +    R   ++G+   L  +E  +L   + N GK + K  IF  ++G
Sbjct: 122 AQEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             D   E   +  HI  LR K+         + +   +GY  + 
Sbjct: 182 T-DSFSESQTLTVHIKMLRAKIEENPREPKRILTVWGVGYRYEE 224


>gi|167588550|ref|ZP_02380938.1| DNA-binding response regulator CreB [Burkholderia ubonensis Bu]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+                 AR D+  ++  L        
Sbjct: 6   ILVVEDELAIADTIVYALGTDGMQTVHCTLGHAALERLREARFDLVVLDVGL--PDINGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  I RRL  
Sbjct: 64  EVCRTLRTFTDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNR 123

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +                + +DG      G+   L R E  +L  L+ + G+  ++ Q
Sbjct: 124 PAAQPRAQGPGTPDVAQGFELDADGARLAWLGQTLNLTRYEFGLLALLVRHPGRIYSRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++        +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 LMDLVW-RDAIDTTDRTVDTHIKTLRAKLRAIDPARDPIRTHRGMGYSL 231


>gi|145223425|ref|YP_001134103.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145215911|gb|ABP45315.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    D        +      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDELPLAEVVASYLERDQFEAVVAGNGVDAIAVARDFDPDVVILDLGL--PGIDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++ARV A+ RR +V 
Sbjct: 79  VCRQLRTFSDAYVVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARVRAMLRRPRVL 138

Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + V    R+  +  E   L R E  ILE L    G  +++ 
Sbjct: 139 QSATATAEREVAPPRRFGALSVDVAAREVGIDDEQILLTRTEFDILEALSGRPGIVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 199 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 247


>gi|84625308|ref|YP_452680.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369248|dbj|BAE70406.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 12  LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 69

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP +  E+LARV A+ RR + 
Sbjct: 70  AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 129

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +++         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 130 SNEQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 190 LECARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 235


>gi|307329229|ref|ZP_07608394.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885128|gb|EFN16149.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 22/235 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVSAIEAFLIGKGE 58
            +L++D   V     A+    G  +    S E         S A   V  ++  L    +
Sbjct: 3   LLLVEDDNHVAAALSAILSRHGFEVTHARSGEEALQALLPDSGAPFGVVLLDLGL--PDQ 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR
Sbjct: 61  DGFEVCGKIRKRTATPVIMVTARADVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSRR 120

Query: 119 LKVSNNRAETGPIRVFSD-------------GRDPEVQGEVFPLPRRERRILEYLMANRG 165
               +                           R   V G    L R+E  +L  L    G
Sbjct: 121 TAPQDTGHGADEGPDGPHPPLRLGPVTIELPTRQVSVNGTTVSLTRKEFDLLALLAQRPG 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + QI S ++           +E H++ LR KLR       +++ R +GY +
Sbjct: 181 VVFRREQIISEVW-RTSWEGTGRTLEVHVASLRSKLR---MPALIETVRGVGYRL 231


>gi|219855386|ref|YP_002472508.1| hypothetical protein CKR_2043 [Clostridium kluyveri NBRC 12016]
 gi|219569110|dbj|BAH07094.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G       S    +        ++  ++  L   G    
Sbjct: 9   ILIVEDDNDINKILELIVKEQGYKATCCFSGTEAQLRLQQQSFNLILLDIML--PGLTGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL R IR  S +P+I IS    ++  ++    G DD + KP    E+     V      L
Sbjct: 67  ELLREIRKQSSIPVIIISAKSIIEDKVNLLKLGADDYMVKPFAREEVAARIEVQLRKNYL 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +      + +        V+     L   E  IL+ ++ +  +  +K +++  ++ 
Sbjct: 127 QQTGDCLSWKELTLDESQHRVMVKKSELNLTNVEFDILKIMLRHPKQVFSKAKLYELLWN 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +N +  H+S +RKK+      + + +   +G+S+
Sbjct: 187 DI-YQGNDNSISVHVSNIRKKISAITSEEYIKTIWGIGFSL 226


>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
 gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
           z3032]
 gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
 gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D        +G  ++  +  +    +  S    +  ++  L       L
Sbjct: 3   ILVIEDDQTTRDFVTKALEQEGFIVDSSDDGKEGLMMAISCDYQLIILDRML--PNLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++   IRA     P++ +S   S+   ++   +G DD + KP    E    +  +    R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++N  +   + +    +   +   + PL  +E  +L YL  N  + V++ ++F A 
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+KLRKKL N    D +++ R  GY +
Sbjct: 181 WD-YHFDPKTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGYVL 222


>gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 241

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D  +     +G+      +    +      + D+  ++      GE  L
Sbjct: 8   ILIVDDHREIRDALVKYLEKNGIRATSAANAVAMDVAMKEGQFDLIVLDVM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   +P++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 66  SVCRRLRAQGGIPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIKAILRRSNR 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           +            +  R                   L   E R+L   +      +++ Q
Sbjct: 126 AEVVGGNLTGHRLAFDRWVLDTDRRTLTSADGADVALTTAEFRLLTVFLERPRFVLSREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   + V +  V++ IS+LR+K+  +      + +    GYS+
Sbjct: 186 LLDLTSGRAAQ-VFDRTVDNQISRLRRKIEADPAKPALIATVWGGGYSL 233


>gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM]
 gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             ++G  ++   +        S    DV  I+  L   G   +
Sbjct: 4   ILVVEDDKTTGAYVAGGLREEGHVVDLIENGREALLQASGTEYDVLIIDRML--PGLDGM 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++    +   ++  ++G DD + KP    E+ ARVAA+ RR +
Sbjct: 62  ALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            +    R     G+V  L  RE  +LE L+  +G+   +T +  A++
Sbjct: 122 ATQEETILRAGDLEMDLMHRKVTRAGQVIDLLPREFALLEQLLRRKGRVQTRTMLLEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     + NVVE+HIS+LR K+      + +++ R  GY I
Sbjct: 182 DIS-FDPQTNVVETHISRLRAKVDKPFETELIETVRGSGYRI 222


>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +     G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEDAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|255281631|ref|ZP_05346186.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255267698|gb|EET60903.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A+  + G    G    E    +    R D+  ++      G    
Sbjct: 4   ILVVDDDKNIRRFLCAVLSNAGYRPIGAACAEDALKIMEEKRIDLIVLDVM--MPGMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              +++R      P++ ++     +     F +G DD + KP++  E+L R+ A+ RR +
Sbjct: 62  AFTKLLRDCRNDLPVLMLTAKQLPEDLKQGFLAGTDDYMTKPVNEEELLLRIGALLRRAR 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++++R    G   +  D      +GE   LP++E  +L  L++       + Q+   I+G
Sbjct: 122 IASDRQLTVGSTTLNFDSLTVSCRGETQLLPQKEFFLLYKLLSFPNHIFTRLQLMEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ +   +  HI++LRK+  N   F  + + R LGY 
Sbjct: 182 PCTQSTDA-TISVHINRLRKRFENSPDFSII-TIRGLGYK 219


>gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A       + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A +  ++++H+  +RKKL        + + + +GY ID 
Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214


>gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +       L +S++ D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   +  R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     +  +     V  +   L    +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|84623104|ref|YP_450476.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84367044|dbj|BAE68202.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 81/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A       A    DG  +      E    L      D+  ++  L       +E
Sbjct: 7   LLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S  P+I ++        L     G DD V KP   +E++ARV A+ RR    
Sbjct: 65  VLSAIRRASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVTV 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQIF 174
               E       S      V              L   E  +L  L+    K   ++++ 
Sbjct: 125 RAPGEPLQHGRLSVDPAAVVASVQGENGDSVALDLTPTEFNLLALLLKTPCKAFTRSELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L D    E VV+SHI  LR+KL        + + R +GY  
Sbjct: 185 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 228


>gi|319403541|emb|CBI77122.1| transcriptional regulator BatR [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N     G             +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPIGTTPASSLKRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVY-NDQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
 gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G  +    S +    + S     +  ++          +
Sbjct: 3   ILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIVSENTIHLILMDIM--MPEMDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +     G DD + KP +  E++ARV +  RR   
Sbjct: 61  HATLKIRETANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRRYTT 120

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  +   +            +   V GE   L   E +IL++LM   GK  +  QI+ 
Sbjct: 121 LGSYVKRTDVYKTGGLELDDAYKKVTVDGEEVKLTPVEYKILKFLMREMGKVFSIEQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++       + N V  H+ ++R+K+  N      +     +GY ++ 
Sbjct: 181 NVWEEPSYNAD-NTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKVEK 227


>gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+    +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEGEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                ++ +   +  I +    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 SAVKVLTADTLTSSGIHLHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIFG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+     +  +   +L ++   DV  I+          + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWM--MPYLDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +I+R  +  +P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    I       +   +         L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227


>gi|167565429|ref|ZP_02358345.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia oklahomensis
           EO147]
 gi|167575130|ref|ZP_02368004.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia oklahomensis
           C6786]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V D   +   D+G  ++     E   W+      DV  ++  L         
Sbjct: 4   LIVEDEAKVVDYLKSGLADEGWVVDAATDGEEGAWMAVEYDYDVVVLDVML--PKVDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLKV 121
           + R +RAH   P+I ++    +   +     G DD + KP      +    A   R    
Sbjct: 62  VLRALRAHRDTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELVERLRALTRRARVQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +RV    R     G    L  +E ++L  L   RG+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLISRRATRNGVRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLEE 221


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G  +    +           + D   ++  L       L+
Sbjct: 34  LVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIML--PDLDGLQ 91

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA +  +P++ ++   SL   L    +G DD V KP    E++AR+  + RR  +
Sbjct: 92  VLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSTL 151

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + +    IRV       D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 152 VVSDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILDR 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + +VVE +IS LR+K+ +      + + R  GY +
Sbjct: 212 VWS-YDFGGKSSVVEIYISYLRRKI-DAGRNPMIHTVRGSGYML 253


>gi|82701839|ref|YP_411405.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409904|gb|ABB74013.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G S++          L  + + D   ++  L   G   +
Sbjct: 9   ILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGL--PGADGI 66

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYR 117
            L R +R  +    P++ ++   +L+  L  FD G DD + KP      E         R
Sbjct: 67  TLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVAMHKRR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + KV++   ET  +            G    LP +   +L  +M+  G+  ++ ++ S +
Sbjct: 127 KGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRRELESEV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G   E  +   + SH+ +LR+ L    G+DP+++   LGY +
Sbjct: 187 WGDVQETSD--TLRSHMHELRRALTRAGGYDPIETVHGLGYRL 227


>gi|77460884|ref|YP_350391.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384887|gb|ABA76400.1| tw-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L   +   V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLTEQGYTVDRARDGVEGLHLALESDYAVIVLDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIRGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQVSIADLWIDLISRKATRAGTRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDEKLLHTIRGMGYVLE 220


>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
 gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
           W22703]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 242

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A ++          G  L    + +       +   D+  ++  L       +
Sbjct: 5   ILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFARVPDLILLDLGL--PDMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           ++ + IR  SQVP+I +S     +  +   D+G DD + KP        R  +    A+ 
Sbjct: 63  DIIKQIREWSQVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVLRRAVP 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S      G I +  + R      E   L   E ++L  L+  R K V   Q+   
Sbjct: 123 TEEGASETTVRFGKITIDFERRQIWRDQEEIRLSPIEYKLLGTLIKYRDKVVTHRQLLKE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G    A     +   I  LR+KL +       + ++  +GY +
Sbjct: 183 VWGPGATAQNI-YLRVFILNLRRKLEDDPARPVFLITEPGVGYRL 226


>gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++      F  +   +   ++ E            V+ ++  L   G    +
Sbjct: 5   LIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVENPIVTILDVML--PGMDGFK 62

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              I+ R   ++ +I ++        +  F  G DD V KP + +E++ARV A+ RR+ +
Sbjct: 63  TCEILRREFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALLRRIGL 122

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++           ++           +   L  +E  +++  + N+GK + + ++ + +
Sbjct: 123 QSDSKNEVLVSGEFKIDEGAMKVYRSEQELELTPKEYMLMKIFIENQGKALNRNELLNLV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +    +  +V+ +I +LR+K+         +++   +GY 
Sbjct: 183 WG-YSYPGDAKIVDVNIRRLREKIEENSSKPKYIETVWGVGYR 224


>gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50]
 gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)]
 gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|168178082|ref|ZP_02612746.1| transcriptional regulatory component of sensory transduction system
           [Clostridium botulinum NCTC 2916]
 gi|170755464|ref|YP_001780337.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947966|ref|YP_002803057.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120676|gb|ACA44512.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182671281|gb|EDT83255.1| transcriptional regulatory component of sensory transduction system
           [Clostridium botulinum NCTC 2916]
 gi|226843975|gb|ACO86641.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  ++   +    E L  + + D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSL--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRR 118
           +L + IR  S+VP++ ++        +   D G DD + KP         +  +      
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I V     +    GE   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNGINVQLLKGEVYKNGEQLDLTASEYKLLCMFMENPDIVLSPEQILSRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
              +  ++ N +  +I +LR K+ +       + + R +GY 
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYK 223


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGL--PEMDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +    RA    +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ + G    V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+ N    D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKIGN----DLIETVRGLGYRM 216


>gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 298

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++        D G  +                R D+  ++  L   G+  L
Sbjct: 64  IWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQRPDLVVLDLML--PGDDGL 121

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
            L R +R  S   P++ ++        +   + G DD + KP   RE++         R 
Sbjct: 122 TLLRRLRDSSDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRRRG 181

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R  E Q +   +   E  +L   + +  + +++ +
Sbjct: 182 TMPAGTPLADGELVHFGDNVLDLSARTLERQNQPVTITSGEFSLLAAFVQHPHRPLSRER 241

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G      +   ++  +S++R+ +  +      + +    GY  
Sbjct: 242 LIELARG-PASDTDTRSMDVQVSRVRRLVEPDPSRPRYLQTVWGYGYVF 289


>gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
 gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D      G+ G  +    +      L  +   D+  ++  L        
Sbjct: 3   LLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVML--PDVDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +R      P++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QIVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+N+ +   + +       E  G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 SPPSSNQLKISDLTLDLIKHRVERSGYKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDNFETKLIHTVRGMGYMLD 222


>gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14]
 gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14]
          Length = 243

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  ++     E  +   +    D+  ++      G+   
Sbjct: 7   ILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S VP+I ++        +   + G DD + KP   R++LAR+ AI RR KV
Sbjct: 65  TLCQHIRKTSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILRRSKV 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----------FPLPRRERRILEYLMANRGKRVAKT 171
           S+N+      +  S                     F L   +  +L   ++   + + + 
Sbjct: 125 SDNQHSNPSAKFISFSNWRLDTTAHRLVNVLNNEAFELTSGDYSLLMLFLSRPNQILDRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I  A  G  D    E  ++  +S+LR +L +K      + + R  GY  
Sbjct: 185 TISCATRGR-DAQPSERGIDVALSRLRNRLGDKGRTQRLIKTSRGNGYIF 233


>gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  N       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
           +L   +RA     P++ +S    +   +    +G DD + KP    E  + A       +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|304392753|ref|ZP_07374693.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130]
 gi|303295383|gb|EFL89743.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130]
          Length = 234

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +          ++ R D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLTAKRPDLAVFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRTAA 121

Query: 122 SNNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                               + +  +      +G+   L   E  IL  L    G   ++
Sbjct: 122 RAEGGPRIEDGGGDILERGHLAMDQERHTSAWKGKAVTLTVTEFLILYALAQRPGVVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 DSLMDAAYD-DQVYVDDRTIDSHIKRLRKKFKQTDDSFDMIETLYGVGYRF 231


>gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +   +   ++             D+  ++           
Sbjct: 13  ILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVM--MPEMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E  + IR  S VP++ ++   S Q  +   D G DD + KP    E+L+R       ++ 
Sbjct: 71  ETLKAIREVSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRSLM 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         +++    R+  V+G+   L   E R+L +L++N G+ +    + S 
Sbjct: 131 SPPARKTEIVVDEDLQIDFARREVMVRGKKVVLRPTEYRLLYHLVSNAGRLMTHETLLSK 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G      E + +  +I+ LR+KL         + ++R +GY  
Sbjct: 191 VWGREYRD-EAHYLRLYITYLRQKLEEDPAHPKYILTERGIGYRF 234


>gi|291543513|emb|CBL16622.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M  L++D   +++       + G+   GF             + D+  ++  L    G  
Sbjct: 1   MIYLLEDDNSIRELVTYSLNNSGLETRGFEKPSDFWRGMEQEQPDLVLLDIMLPEEDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R      ++P++ ++   S    +   D G DD V KP    E++ARV A+ RR 
Sbjct: 61  ILKKLRSNPPTRKLPILMLTAKGSEYDKVIGLDCGADDYVPKPFGMMELIARVKALLRRT 120

Query: 120 KVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  + + E     ++         V GE   L  +E  +L   + NR   + + Q+ + +
Sbjct: 121 ERKDPQPEHTIRGLYVCPAKHIVTVDGEPVSLTLKEFEMLCVFLENRNVVLTRDQLLNKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +    E   V+ HI  LR+KL      D +++ R +GY +
Sbjct: 181 WG-YAFDGESRTVDVHIRSLRQKLGEY--ADVIETVRGIGYKL 220


>gi|229169580|ref|ZP_04297283.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613855|gb|EEK70977.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYDAVVTENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|55821339|ref|YP_139781.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55823251|ref|YP_141692.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55737324|gb|AAV60966.1| response regulator (homolog to RR01Spn & Sth) [Streptococcus
           thermophilus LMG 18311]
 gi|55739236|gb|AAV62877.1| response regulator (homolog to RR01Spn & Sth) [Streptococcus
           thermophilus CNRZ1066]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E   + +     D   QGEV  L + E +IL+ L  + G  V++  +   ++
Sbjct: 122 FGKDQNLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFDHAGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      D +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGY 220


>gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          DG  +    + +    +       +  ++          +
Sbjct: 4   ILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVLKEQDIHLVLMDIM--MPEMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP+I ++        +     G DD + KP +  E+ ARV +  RR   
Sbjct: 62  AAMVKIRETSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRRYMQ 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    G I +    ++  + GE   L R E  IL+ LM + G+  +  QI+ 
Sbjct: 122 LGGGAIRKDVLSIGGIELDDRSKEVSLDGEKISLTRTEYDILKLLMEHPGEVFSPNQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +    EN V  HI  LR+K+  N      +      GY ++
Sbjct: 182 QVW-QDNPYGTENTVAVHIRHLREKVEYNPAEPRYLKVVWGRGYKME 227


>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
 gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G            +    +   D+  ++  L   G+  L+
Sbjct: 7   LIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWML--PGQSGLQ 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYR 117
           L R  R   +   +P++ ++        +   D+G DD + KP          R     R
Sbjct: 65  LARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAVLRRR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V   R E G + + +       QG    +   E ++L YLM +  +  ++ Q+   +
Sbjct: 125 APEVVTERVEIGELALDTATHRVTWQGNALKVGPTEFKLLAYLMQHAERVHSRAQLLDKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 WGDHVY-IEERTVDVHVKRLRESLGAAS--PMVETVRGAGYRL 224


>gi|187928922|ref|YP_001899409.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|309783197|ref|ZP_07677913.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|187725812|gb|ACD26977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|308918075|gb|EFP63756.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++   +      L  +   D+  ++  L     +  
Sbjct: 3   LLVVEDESKTGEYLQQGLSEAGFVVDLARNGLDGRHLAMTGDYDLLILDVML--PDLEGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++   +R+    VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  QILHALRSTELAVPVLFLTARDSVADRVKGLELGADDYMVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R +   + +    R     G+   L  +E  +LE L    G+ + ++ I S ++
Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRITLTSKEFSLLELLARRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDNFEPKLIHTVRGMGYVLE 222


>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|167841324|ref|ZP_02468008.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia thailandensis
           MSMB43]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V D   +   D+G  ++     E   W+      DV  ++  L         
Sbjct: 4   LIVEDEAKVVDYLKSGLADEGWVVDAAADGEEGAWMAVEYDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLKV 121
           + R +RAH   P+I ++    +   +     G DD + KP      +    A   R    
Sbjct: 62  VLRSLRAHKDTPVIMLTARDRVDDRVRGLRDGADDYLTKPFSFLELVERLRALTRRARVQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +RV    R     G    L  +E ++L  L   RG+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLISRRATRNGVRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLEE 221


>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
 gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
           34H]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G ++    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R +S   P++ ++        +   + G DD + KP + RE        +  R 
Sbjct: 66  SICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRRRT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   +  N    G   +    R+ +      PL   E  +L+ L+ +  + +++ +
Sbjct: 126 QEAPGAPALEENVISFGGYHLNLATREMQKDDISMPLTSGEFAVLKALVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L         + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPAKPRYLQTVWGLGYVF 233


>gi|16800482|ref|NP_470750.1| two-component response regulator [Listeria innocua Clip11262]
 gi|16803417|ref|NP_464902.1| two-component response regulator [Listeria monocytogenes EGD-e]
 gi|46907605|ref|YP_013994.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47094403|ref|ZP_00232093.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|47095961|ref|ZP_00233564.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|116872809|ref|YP_849590.1| two-component response regulator [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|217964476|ref|YP_002350154.1| two-component response regulator [Listeria monocytogenes HCC23]
 gi|224499953|ref|ZP_03668302.1| two-component response regulator [Listeria monocytogenes Finland
           1988]
 gi|226223978|ref|YP_002758085.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254824563|ref|ZP_05229564.1| two-component system response regulator [Listeria monocytogenes FSL
           J1-194]
 gi|254827638|ref|ZP_05232325.1| two-component system response regulator [Listeria monocytogenes FSL
           N3-165]
 gi|254829864|ref|ZP_05234519.1| two-component response regulator [Listeria monocytogenes 10403S]
 gi|254852575|ref|ZP_05241923.1| two-component system response regulator [Listeria monocytogenes FSL
           R2-503]
 gi|254898457|ref|ZP_05258381.1| two-component response regulator [Listeria monocytogenes J0161]
 gi|254912052|ref|ZP_05262064.1| two-component response regulator [Listeria monocytogenes J2818]
 gi|254932562|ref|ZP_05265921.1| two-component system response regulator [Listeria monocytogenes
           HPB2262]
 gi|254936379|ref|ZP_05268076.1| two-component system response regulator [Listeria monocytogenes
           F6900]
 gi|254993108|ref|ZP_05275298.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|255025837|ref|ZP_05297823.1| two-component response regulator [Listeria monocytogenes FSL
           J2-003]
 gi|255030066|ref|ZP_05302017.1| two-component response regulator [Listeria monocytogenes LO28]
 gi|255521764|ref|ZP_05389001.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|284801763|ref|YP_003413628.1| two-component response regulator [Listeria monocytogenes 08-5578]
 gi|284994905|ref|YP_003416673.1| two-component response regulator [Listeria monocytogenes 08-5923]
 gi|289434659|ref|YP_003464531.1| two-component DNA-binding response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|290893514|ref|ZP_06556497.1| two-component system response regulator [Listeria monocytogenes FSL
           J2-071]
 gi|300766397|ref|ZP_07076354.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|315282247|ref|ZP_07870699.1| response regulator ArlR [Listeria marthii FSL S4-120]
 gi|315303046|ref|ZP_07873754.1| response regulator ArlR [Listeria ivanovii FSL F6-596]
 gi|16410793|emb|CAC99455.1| two-component response regulator [Listeria monocytogenes EGD-e]
 gi|16413887|emb|CAC96645.1| two-component response regulator [Listeria innocua Clip11262]
 gi|46880873|gb|AAT04171.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47015707|gb|EAL06637.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017224|gb|EAL08067.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116741687|emb|CAK20811.1| two-component response regulator [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|217333746|gb|ACK39540.1| two-component response regulator [Listeria monocytogenes HCC23]
 gi|225876440|emb|CAS05149.1| two-component response regulator [Listeria monocytogenes serotype
           4b str. CLIP 80459]
 gi|258600017|gb|EEW13342.1| two-component system response regulator [Listeria monocytogenes FSL
           N3-165]
 gi|258605888|gb|EEW18496.1| two-component system response regulator [Listeria monocytogenes FSL
           R2-503]
 gi|258608970|gb|EEW21578.1| two-component system response regulator [Listeria monocytogenes
           F6900]
 gi|284057325|gb|ADB68266.1| two-component response regulator [Listeria monocytogenes 08-5578]
 gi|284060372|gb|ADB71311.1| two-component response regulator [Listeria monocytogenes 08-5923]
 gi|289170903|emb|CBH27445.1| two-component DNA-binding response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|290556859|gb|EFD90390.1| two-component system response regulator [Listeria monocytogenes FSL
           J2-071]
 gi|293584121|gb|EFF96153.1| two-component system response regulator [Listeria monocytogenes
           HPB2262]
 gi|293590019|gb|EFF98353.1| two-component response regulator [Listeria monocytogenes J2818]
 gi|293593802|gb|EFG01563.1| two-component system response regulator [Listeria monocytogenes FSL
           J1-194]
 gi|300512901|gb|EFK39991.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|307570959|emb|CAR84138.1| two component response regulator [Listeria monocytogenes L99]
 gi|313608901|gb|EFR84665.1| response regulator ArlR [Listeria monocytogenes FSL F2-208]
 gi|313614107|gb|EFR87799.1| response regulator ArlR [Listeria marthii FSL S4-120]
 gi|313619043|gb|EFR90859.1| response regulator ArlR [Listeria innocua FSL S4-378]
 gi|313623855|gb|EFR93974.1| response regulator ArlR [Listeria innocua FSL J1-023]
 gi|313628581|gb|EFR97006.1| response regulator ArlR [Listeria ivanovii FSL F6-596]
 gi|313633342|gb|EFS00188.1| response regulator ArlR [Listeria seeligeri FSL N1-067]
 gi|328467515|gb|EGF38584.1| two-component DNA-binding response regulator [Listeria
           monocytogenes 1816]
 gi|328475027|gb|EGF45817.1| two-component DNA-binding response regulator [Listeria
           monocytogenes 220]
 gi|332311819|gb|EGJ24914.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +       N       L  +   D   ++  L       +
Sbjct: 4   ILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLML--PHLNGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   Q P+I I+   S+   +   D G DD + KP    E+LAR+ ++ RR++ 
Sbjct: 62  EVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVEN 121

Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   A+   ++  +     + R  +   E+  L +RE  +L  LM N    + +  + + 
Sbjct: 122 AEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  VE NVV+ ++  LR K+ +      + + R  GY +
Sbjct: 182 VWG-YETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVM 224


>gi|325002716|ref|ZP_08123828.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 242

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         D+G  ++  ++ E           D+  ++  L   G     
Sbjct: 12  LLVDDDVRIGRALGLALDDEGFDVDAVHTGEEALERAGDPGIDLVLLDLML--PGIDGFT 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++        +   ++G DD V KP+   E+ AR+ A+ RR + +
Sbjct: 70  VCRRLRDAGDLPIIMVTARSDSADVITGLEAGADDYVTKPLVAGELAARIRALLRRRRPA 129

Query: 123 NNRAETGPIRVFSDGRDPEVQGE---VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +       D  V         L R E R+L  L A  G+ V + ++ S ++G
Sbjct: 130 PAAPRRLVLGDVELRPDEGVVLRAGAPVHLTRTEFRLLAELAAAAGRIVTRDELLSRVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            ++   +  +++ H+ +LR+K+  +      V + R  GY 
Sbjct: 190 -YEYHGDTRLLDVHVRRLRRKVETDPDRPSVVLTVRGAGYK 229


>gi|315606091|ref|ZP_07881122.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312373|gb|EFU60459.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +    + L  +   D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYDVRAHATG--GQALADARGVDLVVLDLGL--PDIDGLD 60

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + R +RA     P++ ++        +   D+G DD V KP    E+LARV A    +  
Sbjct: 61  VARELRASGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQTS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        IR+               L  +E  +L  L+   G  VA+  +   ++G
Sbjct: 121 EPAEGELRAQDIRMDVAAHRAFAGDTELSLTAKEFDLLRVLLREAGSVVARETLMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
 gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIISFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|206563842|ref|YP_002234605.1| DNA-binding response regulator CreB [Burkholderia cenocepacia
           J2315]
 gi|198039882|emb|CAR55857.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 237

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+        +         R D+  ++  L        
Sbjct: 6   ILIVEDEQAIADTIVYALGTDGMQTVHCTLGQAALDRLRGTRVDLVVLDVGL--PDLSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 64  EVCRRLRTFTDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRFHR 123

Query: 122 SNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +     T                 + +DG      G    L R E  +L  L+ + G+  
Sbjct: 124 TAAPEPTPATAPVDAPAPVASGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIY 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++ Q+   ++        +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 SREQLMDLVWHEA-LDSADRTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 235


>gi|148378608|ref|YP_001253149.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932965|ref|YP_001382995.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934579|ref|YP_001386541.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170761006|ref|YP_001785954.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947859|ref|YP_002802950.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288092|emb|CAL82160.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929009|gb|ABS34509.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930493|gb|ABS35992.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169407995|gb|ACA56406.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841886|gb|ACO84552.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  ++    DG  ++G    +  +        D+  ++  L    E   E
Sbjct: 6   LVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINL--PDESGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP + +E+        R    Y
Sbjct: 64  LCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             ++V  +GR      +   L  +E  +LE+ + NR    ++  + + 
Sbjct: 124 KEKSDKEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLNK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 184 VWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTVFGIGYVM 226


>gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
 gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
          Length = 245

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G            + +      D+  ++      G+  L
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIM--MPGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA+S +P++ ++        +   + G DD ++KP + RE+LARV AI RR + 
Sbjct: 65  TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE------------VFPLPRRERRILEYLMANRGKRVA 169
                                  +               L   E  +L  L+    + ++
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDLAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   +    +    +  ++  IS+LR KL  +      + + R  GY +
Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|94497234|ref|ZP_01303806.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94423339|gb|EAT08368.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        + G  +   +S         +   D+  ++  L   G   +
Sbjct: 6   IILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVML--PGTNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I IS   S    +   + G DD + KP   RE++AR+ AI RR+ V
Sbjct: 64  DLCRQIRRKSDVPIIFISARGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRRVGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
                E        DG                +  L   E  +L   +++  + +A+ ++
Sbjct: 124 ERGPDEHRESEAHFDGWAVNFPRRELRSPTGAIVDLTGAEFDLLCSFLSHPQRVIARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                        +  ++  +S+LR+KL  +    P+ + R +GY  +
Sbjct: 184 IELSRTRMG-DSSDRSIDVLVSRLRRKLSTQDKGAPITTVRGVGYMFN 230


>gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +           G +++   +      L  +   D+  ++  L   G   L
Sbjct: 3   ILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVTLEFDLIILDIML--PGMDGL 60

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L R +R  +  Q P+I ++    L+  L  F +G DD + KP    E+ ARV A+  R 
Sbjct: 61  TLCRKLRKEAGVQTPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRRS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V +NR +   +    D  +   QG+   L     ++LE LM      V +  +   ++
Sbjct: 121 QPVQSNRLQVADLVFDLDTLEITRQGKSLRLNPIGLKLLEKLMKCSPNVVRRETLQDILW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SHI  LR+ +        + +   +GY +
Sbjct: 181 G--DDVPDSDSLRSHIHLLRQTIDKPFATPLIHTIHGIGYCL 220


>gi|319781901|ref|YP_004141377.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167789|gb|ADV11327.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    +        +    D+  ++      GE  +
Sbjct: 20  LLVVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVM--MPGETGV 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + +RA   VP++ ++      + +   ++G DD + KP   RE++ R+  I RR   
Sbjct: 78  DLTKSLRAEKNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRRGGP 137

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       R+ +  GE   L  RE+ IL    A  G+ + + ++    
Sbjct: 138 ATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHELV--- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 195 --GDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRL 236


>gi|295107250|emb|CBL04793.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +     F   G  +    S +     Q+    D+  ++           
Sbjct: 10  LLVADDEPEIVEMLEEYFAGRGFRVLTAGSGQEALE-QAVHGPDLVLLDVG--MPRLDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R H   P++ ++        L+ F  G DD V KP     + ARV A   R + 
Sbjct: 67  EVCRRLREHLTCPILFLTARVEDVDALEGFACGADDYVLKPFSLAVLGARVDAHLARDQC 126

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              RAE             R   V G    L RRE  I+ +L  + G+   + +I   + 
Sbjct: 127 QQVRAEVRFDGDLAVDYRTRTVTVAGAPVELTRREFDIVAFLSKHPGQVFDRDRIHERV- 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           G ++   +  VV  HI ++RKKL       DPV++   +GY 
Sbjct: 186 GGWENESDSQVVTEHIRRIRKKLAAAGTEHDPVETVWGMGYR 227


>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 220

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +  G       +G +++             S   D   ++  L       L
Sbjct: 3   LLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGL--PRMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     VP++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                             +     G    L  +E ++L  L++  G+ + + Q+   +YG
Sbjct: 121 GRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++E  E N +E HI  LRKK       + + + R +GY ++ 
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSELIRTVRGVGYLVEE 218


>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
 gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +  + +   +        + A  D   ++  L   G   L
Sbjct: 3   LLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIML--PGIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR      P++ ++    ++  +   D G DD + KP    E++ARV  + RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   T    V   + ++     +   L  +E  +LEY++ N+   +++ QI    + 
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ +I  LRKK+    G   + + R +GY +
Sbjct: 180 NYDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +    +           + D   ++  L         
Sbjct: 29  LVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVML--PDLDGFA 86

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 87  VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 146

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +   + V       D  +    G++  L   E  +L YLM N  + ++K QI   
Sbjct: 147 AVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 206

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 207 VW-NYDFGGQANVVELYISYLRKKI-DVGRAPMIHTLRGAGYVL 248


>gi|13474249|ref|NP_105817.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|260463214|ref|ZP_05811416.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|14025001|dbj|BAB51603.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|259031064|gb|EEW32338.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +          ++   +++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLAARPPNLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 62  ELLRRMRQKSDLPVIFLTSKDDEIDELFGLKMGADDFIRKPFSQRLLVERVRAVLRRASA 121

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               A+    +          +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 122 REAAAKAPSQQARSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  + Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDSAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRF 230


>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 222

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGL--PQMDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A I R  
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +     ++ G    L   E R+L YLM ++G  V++T++   +Y 
Sbjct: 121 GHASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             D   + N +E  + +LRKKL    G D +++ R +GY + + N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GVDLIETVRGMGYRMREPN 220


>gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
 gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++         +G+ +           +   AR D+  ++      GE  L 
Sbjct: 18  LVVDDDAEIRTLLAEYLSQNGIRVTVARDATEMRQVFDEARPDIIILDLM--MPGEDGLT 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+  + RR +  
Sbjct: 76  VCRELRSRSNVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRRTRTL 135

Query: 123 NNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      F+                 + PL   E R+L  L+ +  + + + Q+  
Sbjct: 136 PPSLGDAQQVRFAGWTLDSGARHLISPDNVIVPLSGAEYRLLSVLIQHPNRVLDRNQLMD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              G      +   ++  IS+LR +L +       + + R  GY +
Sbjct: 196 LTLGREATPFD-RSIDVQISRLRNRLNDDAREPRIIKTIRNEGYIL 240


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E                 DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLML--PELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R   + P+I ++   S+   +   D G DD + KP          R +L R+A  
Sbjct: 63  VARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|261366160|ref|ZP_05979043.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572055|gb|EFB77590.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G   EG              R ++  ++           
Sbjct: 4   ILIVDDEEPITALLCRTLTAAGYRCEGVTDSRLAADRIEQNRYELVLLDIM--MPEVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +   +  P+I ++   +L+  +     G DD + KP    E+LARV A+ RR   
Sbjct: 62  DLLRFL-RPTGTPVIFLTAKAALEDRVQGLRQGADDYIVKPFAPAELLARVEAVLRRTGR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + V +  +    +G+   L  +E  +L  L+ NRG+ + +  I   ++GL 
Sbjct: 121 GMAVLRAWDVTVDTARQQVARKGQPVELTPKEYELLLLLLRNRGRALYRDYILETVWGLD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E      V++HI +LR+KL        +++   +GY +
Sbjct: 181 AELDTTRTVDTHIRRLRRKLGWDEE---IETVWRVGYCL 216


>gi|229816438|ref|ZP_04446739.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM
           13280]
 gi|229807980|gb|EEP43781.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM
           13280]
          Length = 237

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   ++   +      G+  EGF+     +   +    D   ++  L    G +
Sbjct: 1   MIYYVEDDDNIRGLTLYALRQQGIEAEGFSCDSEFKAAVARRVPDAVLLDIMLPDTDGLE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   R  +A + VP++ ++   S    +   D G DD + KP    E+ +R  A+ RR 
Sbjct: 61  IMRRLRADQATATVPIMMLTAKDSELDKVVALDGGADDYLAKPFSLMELTSRCRALLRRG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +  A         +      +  V      L  RE  +LEYLM   G    +  +  
Sbjct: 121 GMMSRPAPEMLSVGGIELSPSHREVRVDGRELKLTLREFDLLEYLMRKPGVVFTRESLLQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G +D       V+ H+  LR+KL      D +++ R +GY +
Sbjct: 181 SVWG-WDFDGGSRTVDVHVQTLRQKLG--SHADRIETVRGVGYRL 222


>gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDTTTIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   +  R  
Sbjct: 61  KLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRGL 120

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 E     +  +   R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 AKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S++   + E      + A  D+  ++          L
Sbjct: 3   ILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLM--MPVMDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
               R   A    P++ ++    +   +   D+G DD + KP   +E+LARV   I R  
Sbjct: 61  TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +++    +  E  GE   L  +E  ILE+LM N+G+ + + QI   ++ 
Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            FD     NV++  I  +RKKL      + + +KR LGY 
Sbjct: 181 -FDYTGGSNVIDVLIKNIRKKLGEC---EAIQTKRGLGYV 216


>gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L R +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  ALCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +    D  + +  G+   L     ++L  LM      V +  +  A++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVKRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
           G  D+  + + + SH+ +LR+ +        + +   +GY +  + N
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFSVALLHTVHGVGYRLAEEPN 225


>gi|332668985|ref|YP_004451993.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338023|gb|AEE44606.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 244

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G ++E   S         +   DV  ++  L       LE
Sbjct: 23  LVVDDEPTLAELLSTALRYEGWTVEHALSGHAAVRQARATTPDVIVLDVML--PDLTGLE 80

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR AH  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 81  VLRRIRAAHPHVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRALLRRAGA 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + R E     G + +  D  +    G+   L   E  +L Y M N  + ++K QI   +
Sbjct: 141 VSAREEAVLVVGDLTLDEDSHEVTRGGDDIRLTATEFELLRYFMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE ++S LR+K+ +K     + + R +GY +
Sbjct: 201 W-QYDFGGQANIVELYVSYLRRKI-DKGREPMLHTLRGVGYVL 241


>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
           [Variovorax paradoxus EPS]
 gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus EPS]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G            +    +   D+  ++  L   G+  L+
Sbjct: 7   LIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWML--PGQSGLQ 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYR 117
           L R  R   +   +P++ ++        +   D+G DD + KP          R     R
Sbjct: 65  LARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAVLRRR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V   R E G + + +       QG    +   E ++L YLM +  +  ++ Q+   +
Sbjct: 125 APEVVTERVEIGELALDTSTHRVTWQGGALKVGPTEFKLLAYLMQHAERVHSRAQLLDKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 WGDHVY-IEERTVDVHVKRLRESLGA--AAPMVETVRGAGYRL 224


>gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++        +DG+  +     E   W+  S+  D   ++  L   G    E
Sbjct: 4   LVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVML--PGIDGFE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
             R +RA     P++ ++   +++  +   D+G DD V KP    E+ AR+ A   R   
Sbjct: 62  TCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGPV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R          L  RE  +LE  M   G+ + +  +    +G 
Sbjct: 122 QRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAWGR 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D     NVV+ ++  LR+++    G + +++ R +GY +
Sbjct: 182 -DYENRSNVVDVYVRYLRERVDRPFGAEAIETLRGVGYRL 220


>gi|206563270|ref|YP_002234033.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039310|emb|CAR55275.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLE 220


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 12  LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 189 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G   +                 D+  ++  L        
Sbjct: 4   ILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIML--PEIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I    ++P+I ++   + +  +    +G DD + KP    E+LARV  + RR + 
Sbjct: 62  ELMDYI-RPLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +R + G + +    R  + QG+   L  +E  +L  L+ N+   + +  I+  I+G  
Sbjct: 121 TESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGSG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               +   V+ H+ +LRKK+  +     + +   +GY ++
Sbjct: 181 -YMGDSRTVDLHVQRLRKKIGWEHK---IKTVYKVGYRLE 216


>gi|313238135|emb|CBY13233.1| unnamed protein product [Oikopleura dioica]
          Length = 241

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +E  ++                 ++  L   G    
Sbjct: 9   LLVIDDDRKLAGLIRDYLTPMGYEVEMRHTGPDGLAEAVEGNYQAVILDVML--PGMDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
            + R +R  S VP++ ++        +   + G DD + K    RE              
Sbjct: 67  GVLRELRKKSDVPVLMLTALGEEADRIVGLEIGADDYLPKTFSSRELLARLRAVTRRTRI 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    +      GP+R+  +     +      L   E  IL  L+ ++G+   +  +   
Sbjct: 127 REDAGAVRELVAGPLRLCEETHTVILDDAPVDLTALEFAILAALLKSKGRVKTREILIEE 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +       V +  ++ H+S LR+KL +       + + R +GYS+
Sbjct: 187 V-SARRFDVFDRSIDVHVSSLRRKLGDDAKSPRFIRTIRGVGYSL 230


>gi|300693441|ref|YP_003749414.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Ralstonia
           solanacearum PSI07]
 gi|299075478|emb|CBJ34771.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum PSI07]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R H   P++ ++    L   L   + G DD + KP    E++ARV  I RR  +
Sbjct: 61  QVIRELRRHKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         + +  R     G    L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|326201967|ref|ZP_08191837.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987762|gb|EGD48588.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +++        +G + +   ++      +  S + D++ ++  L       
Sbjct: 9   LLIIDDEFELRNMINGFLRKEGFTSIFQASNCAEALEVIKSVKPDIAILDVML--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAI 115
             L   +R  S +P++ +S     +  L     G DD + KP   RE++           
Sbjct: 67  FSLLSALRQFSNMPVLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELILRLTAILRRVY 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +      +     +  +G         +PL  +E  +L  L  NR + V    +  
Sbjct: 127 STPKQEQRPVFQLKERIIDLEGGIVRNGSTEYPLTAKEHALLFKLYENRNRIVTSDALCQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           A +G  D    EN +  HI ++R+K+ +     + + + R LGY +
Sbjct: 187 AAWG-DDYYGYENTLMVHIRRIREKIEDNPSSPEYLLTIRGLGYKL 231


>gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58]
          Length = 221

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     E   +L S+   D   ++  L       L
Sbjct: 3   LLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDGHFLGSTESYDAVVLDLGL--PTIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  +     P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++G+   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   + N +E  ++++RKKL    G D + + R LGYS+D 
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADVITTIRGLGYSLDE 218


>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
 gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
           pseudotuberculosis IP 31758]
 gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|15600078|ref|NP_253572.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103984|ref|ZP_01367902.1| hypothetical protein PaerPA_01005057 [Pseudomonas aeruginosa PACS2]
 gi|218893980|ref|YP_002442849.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|254238396|ref|ZP_04931719.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|254244220|ref|ZP_04937542.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|296391722|ref|ZP_06881197.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|313109881|ref|ZP_07795813.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|9951159|gb|AAG08270.1|AE004901_12 two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|126170327|gb|EAZ55838.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|126197598|gb|EAZ61661.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|218774208|emb|CAW30025.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|310882315|gb|EFQ40909.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+  + RR  V
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      ++    R    QG+V  L  +E  +L  LM   G+ +++T I S ++ +
Sbjct: 121 REAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+ N      + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEE 221


>gi|329926723|ref|ZP_08281132.1| response regulator protein GraR [Paenibacillus sp. HGF5]
 gi|328939009|gb|EGG35376.1| response regulator protein GraR [Paenibacillus sp. HGF5]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   +       ++           + +    D+  ++  L        
Sbjct: 4   ILIVEDDERIADKLRSAISKYDFNVRIIEDFNRVMDIFAETMPDLVLLDVNL--PKYDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS   S    +   ++G DD + KP     +LA+V +  RR   
Sbjct: 62  YWCRQIRTQSHCPIIFISARDSGMDQIMALENGADDYITKPFDMELVLAKVRSHLRRAVG 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +  +     V       + +            L ++E  +L  LM   G+ V++ ++ 
Sbjct: 122 AYSSGQEEEPIVENAGLLLYPERLLVTYGDRSAELTQKEAALLTMLMEKDGRVVSRERLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      +++N +  +I+++R+KLR     D +++ R  GY  
Sbjct: 182 DLMW-EDQHFIDDNTLNVYITRVRRKLRELGAVDLIETVRGAGYRF 226


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +E                     ++  L   G   L
Sbjct: 7   ILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLML--PGVDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA +   P+I  S   S    +   + G DD + KP    E++ARV A+ RR +
Sbjct: 65  EICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSE 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A+            +    R+  V G+   L  RE  +L +     GK  ++  +
Sbjct: 125 ALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  N      + +    GY +
Sbjct: 185 LNQVWG-YRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKL 231


>gi|293374574|ref|ZP_06620892.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646807|gb|EFF64799.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +IDD A ++   +     +G  +  F + E      +  + D   ++  + G     L+L
Sbjct: 6   VIDDDANIRQLILRYLEKEGYKVTAFKNAEHVFEAFNMLQPDALVLDIMMPG-TMDGLDL 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAIYR 117
            + IR  SQVP+I +S        +   + G DD ++KP   R      +I+ R      
Sbjct: 65  CKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVRLKIIFRRIEPVM 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   +++    R   V+ +   L   E  +L YL+ N+     +  +   I
Sbjct: 125 VSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKNISFTRENLIQNI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   E  +++  + +LRKKL++      + +    GY ID N
Sbjct: 185 WG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229


>gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 80/224 (35%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +     + E    L +    D+  ++  L        
Sbjct: 11  ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGL--PDTDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119
           EL + +R     P+I ++        +   + G DD +             +      + 
Sbjct: 69  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +            +       QG   PL + E R+L  L+   G+  ++ ++ +A++G
Sbjct: 129 QPAAEAESAPVWHDDAPAYCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMFG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +   + + + +HI  LR KLR      + + +   LGYS + 
Sbjct: 189 -GNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFNE 231


>gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G  ++     E  +    +     + ++  L       +
Sbjct: 3   ILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGL--PRMDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +R      P++ ++   ++   +   D G DD V KP+   E+ AR+ A + R  
Sbjct: 61  DVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R E   + +    R     G    L  RE  +L  LM N G+ +++ QI   +Y 
Sbjct: 121 GRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQIEQHLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + VE N VE H+ +LR KL    G D + + R +GY +
Sbjct: 181 -WGQEVESNAVEVHVHRLRSKL----GSDVIRTVRGIGYVL 216


>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
 gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++   +      +           D+  I   ++      +
Sbjct: 13  ILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMY-PDIDMIILDIMMPRLDGI 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  ++Q+P++ +S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 72  SVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRST 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++        I +       E         +   L   E  IL  L ++  +  +  +IF
Sbjct: 132 ITQEGPANEEITIGPLTIKKESHQVTTSDGKEIQLTVLEFGILFLLASHPNRVFSADEIF 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY I+
Sbjct: 192 ETVW-QQESIVSTKTVMVHVSHLRDKIAEATGGEKVIETVWGVGYKIE 238


>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   +L   +  + +         +L      D++ I+  L        
Sbjct: 3   LLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPL--MDGT 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + R +RA     P++ ++   + Q  +   ++G DD + KP H  E+ AR+ A+  R  
Sbjct: 61  TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GPI + +  +     G    L   E   L YL  + GK ++K ++   +Y 
Sbjct: 121 GHASSQLNYGPITIDTSAKRVYRDGAEVELTGFEYNTLTYLAMHPGKNISKLELTEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + NV+E  + +LRKKL      + + ++R LGY  +
Sbjct: 180 AQDYDRDSNVIEVFVGRLRKKLDPDGSLNLISTQRGLGYRFN 221


>gi|87200632|ref|YP_497889.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136313|gb|ABD27055.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL++D   ++        ++G ++    +         S   D+  ++  L   G   +
Sbjct: 6   IVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIML--PGTSGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE------------IL 109
           EL R +R  S VP+I +S   S +  +   + G DD + KP   RE             +
Sbjct: 64  ELFRRLRRQSDVPIIFVSARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRRGQV 123

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       S +    G     +        G +  L   E  +L   ++   + + 
Sbjct: 124 NGTDTSGDTGSRSGDIRFEGWTVSMARRELHSPSGAMVDLTGAEFDLLATFISQPQRVLG 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++             +  V+  +S+LR+KL    G  P+ + R +GY  
Sbjct: 184 RERLIELSRTRLG-DSSDRSVDVLVSRLRRKLSAAGGNAPIVTVRGVGYMF 233


>gi|42784035|ref|NP_981282.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739965|gb|AAS43890.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQSHIQKYGYDAVVTENFDDIMESFNTVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + +++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226


>gi|17549263|ref|NP_522603.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431515|emb|CAD18193.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             ++G  +   +S E  +     A   +  ++  L   G+  +
Sbjct: 3   ILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEADASLLVAC-QLIILDWML--PGKDGI 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q P++ ++   +    +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 60  ALCRELRERDLQTPVLMLTARDATADRIAGLDTGADDYLTKPFVFDELLARVRALLRRAR 119

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++          V   + R     G+   +  +E  ILEYLM + G+ V++ Q+   ++ 
Sbjct: 120 LAPAAPRVIGDLVLDPNARAVTRGGQALDVTPKEYAILEYLMRHAGQIVSRLQLAEHVWR 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A++ N+++ H+  LR+K+        + + R  G+ +
Sbjct: 180 ADLIAID-NLIDVHMKNLRRKVDPPGQPALIHTVRGQGFRL 219


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      DV  ++           
Sbjct: 9   LLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
 gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
 gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|163853174|ref|YP_001641217.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218531978|ref|YP_002422794.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240140593|ref|YP_002965073.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens AM1]
 gi|254563083|ref|YP_003070178.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression [Methylobacterium
           extorquens DM4]
 gi|163664779|gb|ABY32146.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524281|gb|ACK84866.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240010570|gb|ACS41796.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens AM1]
 gi|254270361|emb|CAX26357.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens DM4]
          Length = 241

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   +         + + + AR D+  ++  L   GE  L
Sbjct: 11  ILVVEDDREISALVARYLRANECRVSVAGDGREMDRVLADARVDLIVLDLML--PGEDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 69  SLCRRLRAASQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRKGA 128

Query: 122 SNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      FS         +    +G    +   E  +L  L    G+ +++ Q+ 
Sbjct: 129 EPQDGDGARRFHFSGWTLDVGLRQVLSPEGARIAVTGAEFDLLHALCLRPGRVLSRDQLL 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               G      E   ++  +S+LR+KL  +    + + + R  GY  
Sbjct: 189 DLTQGRAAGPFE-RSIDVLVSRLRQKLERDPRNPEIIRTIRSGGYLF 234


>gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 251

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L       L
Sbjct: 29  ILIIEDDLEAAAYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRML--PRRDGL 86

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 147 TPEQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 207 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|116053034|ref|YP_793353.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588255|gb|ABJ14270.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+  + RR  V
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +    R    QG+V  L  +E  +L  LM   G+ +++T I S ++ +
Sbjct: 121 REAEQVQLADLHLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+ N      + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEE 221


>gi|166711394|ref|ZP_02242601.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575701|ref|YP_001912630.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188520153|gb|ACD58098.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 81/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A       A    DG  +      E    L      D+  ++  L       +E
Sbjct: 7   LLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S  P+I ++        L     G DD V KP   +E++ARV A+ RR    
Sbjct: 65  VLSAIRRASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVAV 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQIF 174
               E       S      V              L   E  +L  L+    K   ++++ 
Sbjct: 125 RAPGEPLQHGRLSVDPAAVVASVQGENGDSVALDLTPTEFNLLALLLKTPCKAFTRSELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L D    E VV+SHI  LR+KL        + + R +GY  
Sbjct: 185 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 228


>gi|313200176|ref|YP_004038834.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
 gi|312439492|gb|ADQ83598.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
          Length = 268

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D     +       + G   +  +     + +  +   D+  ++  L    G ++
Sbjct: 45  ILVVEDEHKTGEYLRKGLTEAGFVTDLVHDGLDGQHMALAEHYDLIILDVMLPRASGWQI 104

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A    P++ ++    ++  +   + G DD + KP    E+LAR+  + RR +
Sbjct: 105 IAALRE--AGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 162

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +    R  +  G+   L  +E  +LE L+  RG+ ++++ I S ++ 
Sbjct: 163 TREADVLQVANLEIDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 222

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NV+E  + +LR K+ +      + + R +GY +D 
Sbjct: 223 M-NFDSDTNVIEVAMRRLRAKIDDPFEPKLIHTVRGMGYVLDV 264


>gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +  +    + G S                   DV  ++           
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVM--MPKMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  +  P++ ++    +   +   + G DD + KP    E++AR+  + RR  +
Sbjct: 61  EVLRRLRKETDTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGPI 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      ++    R     G    L  +E  +L     ++ + ++++ I S ++ +
Sbjct: 121 REEEQLHIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+ +      + S R +GY  D
Sbjct: 181 -NFDSDTNVVDVAVRRLRLKVDDPFQLKLIHSVRGIGYRFD 220


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +             +   + E       +   D+  ++  L        
Sbjct: 4   ILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIENDSFDLILLDVML--PKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I     +P+I ++   S+   +    +G DD + KP    E+LAR+  + R    
Sbjct: 62  TLLEKI-KPLGIPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N      + +          GE   L  +E  +L +L+ N+   + + ++   I+G +
Sbjct: 121 NTNVINFEDVEINLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E   +++HI KLRKKL+ K   D + +   LGY ++
Sbjct: 180 DYVGETRTIDNHIQKLRKKLQWK---DKIKTVFKLGYRLE 216


>gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G  +                + D+  ++           
Sbjct: 4   LLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKDQFDLIIMDIM--MPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-----AIY 116
              + IR  +  P+I +S        +  F++G+DD V KP   +E++ RV         
Sbjct: 62  SAVKKIREEASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILKRVHG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K   +  E   +R+    R   +  +   +  +E  +L Y++ N G  + + Q+   
Sbjct: 122 EEDKKHKDVYEYEGLRIDFTARKVFINEKESEMSPKEYVLLFYMVRNEGIALTREQLIHD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L        + + R +GY  +
Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLGIYSST--IVTLRGVGYRFE 223


>gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 257

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   +     A     G +LE   SL            D+  ++  L       L
Sbjct: 34  LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLML--PDGDGL 91

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +++ H Q+P+I ++    +   +   + G DD V KP    E+LAR+ A  R   
Sbjct: 92  EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANP 151

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + +    +  +V G+   L  +E ++L  L  NR   V + +I   +
Sbjct: 152 GAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLAENRNHLVTREEIRKRL 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +          V++ HI  LR+K+         + +    GY  
Sbjct: 212 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPRHIVTVPGRGYRF 255


>gi|107026427|ref|YP_623938.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116692385|ref|YP_837918.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735613|ref|YP_001776873.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105895801|gb|ABF78965.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116650385|gb|ABK11025.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169817801|gb|ACA92383.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGARLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFAEKLLHTIRGMGYVLE 220


>gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2]
          Length = 246

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            ++IDD   + D         G  ++  N  +      ++    D+  ++          
Sbjct: 20  ILIIDDDNELTDMLATYLSSMGYQIQVSNDGQAGLAEATAGGHYDLILLDVM--MPKMDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---- 116
            ++ + +R     P++ ++        +   + G DD + KP +HRE++AR+ AI+    
Sbjct: 78  FDVLKKLRVSHATPVLMLTARGDDYDRILGLELGADDYLPKPFNHRELVARIKAIFRRLS 137

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + + S  +  +V      L   E  IL  LM N G RV K +I 
Sbjct: 138 LTHSGGTIEQDLIVNELFLSSSSQVAKVGEVEMTLTSTEFSILRLLMLNTGSRVTKEEIS 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G   +A +   ++ H+S LRKK+      + + + R +GY +
Sbjct: 198 LKVLGKSLQAFD-RSIDMHVSNLRKKIAAISNIEKIKTIRGVGYML 242


>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
 gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D     F + G +       E    L  +   DV  I+          L
Sbjct: 18  ILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRM--MPRRDGL 75

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 76  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 196 D-YHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYML 236


>gi|325528239|gb|EGD05411.1| two-component regulatory system response regulator protein
           [Burkholderia sp. TJI49]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLE 220


>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G       +      +  +   D+  +   ++       
Sbjct: 4   ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVF-NNTPDIGLVLLDIMLPQFNGY 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + IR  S   P+I ++        ++  + G DD + KP    E+    +     + 
Sbjct: 63  EVLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKKA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                NR     + +  D       GE   L + E  +L YL+ N G   ++ QI   ++
Sbjct: 123 AVSPRNRVAFEDLSIDLDTFMVSRGGESIELSKTEFDLLHYLVLNHGLVQSREQILDQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD    +N+V+ +I  LR K+        + + R  GY I
Sbjct: 183 G-FDYFGNDNIVDVYIKYLRDKIDKPFEKKLIQTVRGRGYVI 223


>gi|300780103|ref|ZP_07089959.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534213|gb|EFK55272.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 259

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G       +             DV  ++  L       LE
Sbjct: 35  LVVDDEQPLAQMVASYLIRAGFDTRQAYTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 92

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S   ++ ++   +    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 93  VCGRIRTFSDCYILMLTARGTEDDKITGLTLGADDYITKPFGIRELVTRVHAVLRRPRTS 152

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +       +V   V  L R E  +L  L    G+ + +  + + 
Sbjct: 153 TIPPQVTTPLTVGELTIDPAAHKVQVGEVVVDLTRTEFELLVTLALRPGQVLTRHDLVTE 212

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +++ R +GY 
Sbjct: 213 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIETVRGVGYR 255


>gi|254719556|ref|ZP_05181367.1| Protein petR [Brucella sp. 83/13]
 gi|265984563|ref|ZP_06097298.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264663155|gb|EEZ33416.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 241

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 22  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGV 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 80  SLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 139

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       GK + + ++    
Sbjct: 140 PAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGKTIPRHELT--- 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 197 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 238


>gi|229826750|ref|ZP_04452819.1| hypothetical protein GCWU000182_02126 [Abiotrophia defectiva ATCC
           49176]
 gi|229789620|gb|EEP25734.1| hypothetical protein GCWU000182_02126 [Abiotrophia defectiva ATCC
           49176]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   ++D       D G  ++ F +             D+  ++      G    
Sbjct: 4   IFIADDEKNIRDLLGKFLADAGHEVKLFENGNALLDKLEEDTPDIVVLDVM--MPGIDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
                IR  H  + ++ ++   +    +  F +G DD + KP    ++  +V AI     
Sbjct: 62  TACSKIRKSHPDITILLLTARDTDADFMTGFTAGCDDYLTKPFSPLKLTLKVNAILNKLG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S      G I +       +V  +   L + E ++L  L+A   K V++ ++  
Sbjct: 122 KTEGEKSTESKTFGDISLDDASFSCKVHEDEVKLTKTEFQVLSLLLATPEKAVSRDKLLL 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G     VE  V +  + +LRKKL++      +++    G+ +
Sbjct: 182 DIWGY--SEVETRVTDDTMKRLRKKLKDAGSTVHIETIWGFGFKL 224


>gi|288573851|ref|ZP_06392208.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569592|gb|EFC91149.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +      G +G  +      +      ++ + D+  ++  L   G+   
Sbjct: 4   ILVVDDDRELGELLAEYLGGEGFQVSLSYDGKNGALEAAAGKHDLVVLDVML--PGQSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S +P+I ++        +   + G DD + KP   RE+LARV A+ RR   
Sbjct: 62  EALKEIRRTSSIPVIMLTAKGDEVDRVLGLEMGADDYLPKPFSPRELLARVRAVMRRRNG 121

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++          +F   R   + G +  L   E R+LE L+ + G+ V++ ++F  +  
Sbjct: 122 PSDPERLTVDDLEMFVRSRQVMLDGIIVDLTSMEFRLLEVLLRSAGQVVSRDELFRKVLE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
                 +   ++ H+S LRKKL     G D + + R  GY
Sbjct: 182 RSAAPFD-RSLDMHVSNLRKKLGPHEDGTDRIRTVRGEGY 220


>gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +    E L      D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYDVRAHATG--AEALADVRGVDLVVLDLGL--PDMDGLD 60

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + R IR+     P++ ++        +   D+G DD V KP    E+LARV A    +  
Sbjct: 61  VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          IR+        V      L  +E  +L  L+   G  VA+  +   ++G
Sbjct: 121 EPVEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D A + +  I  F  +   +      E    +      D+  ++  +    G +V 
Sbjct: 7   LLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMVESLSGIEVC 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++ 
Sbjct: 67  RRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + + + G      G+V PL   E R+L++ + + G   ++ ++  +++G
Sbjct: 127 ALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             D  +E   V+ HI +LRK +       D + + R  GY++D
Sbjct: 187 Q-DSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYALD 228


>gi|148239881|ref|YP_001225268.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. WH 7803]
 gi|1055347|gb|AAB38749.1| response regulator PhoB [Synechococcus sp. WH 7803]
 gi|147848420|emb|CAK23971.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. WH 7803]
          Length = 234

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G  ++   +      L S+   E V  +   L+  G   
Sbjct: 6   LLVVEDDDSIRETVEEALRAEGFEVKSCGNGADAMALLSAPNTEGVDLLVLDLMLPGLGG 65

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112
           L+L R +R  ++  P++ IS   S    +   + G DD + KP          R +L R 
Sbjct: 66  LDLCRQLRKLNNHTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I           +TG + +++        GE   L  +E +ILE L+ N  +  ++ Q
Sbjct: 126 QQIASVPSEDRQVVQTGNLCLYAQECRVTRDGEDLTLSPKEYKILELLIRNPKRVWSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 186 LLERIWGI-DFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 233


>gi|152977169|ref|YP_001376686.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025921|gb|ABS23691.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +     G       + +      ++    +  ++  L         
Sbjct: 5   LIVEDDPNISSLLQSHIQKYGYEAVIAENFDDILESFNAVNPHLVLLDVNL--PKFDGFY 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+   
Sbjct: 63  WCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGD 122

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  I        F +  +   + E   L ++E  + E L+A   +  ++  + +A
Sbjct: 123 YAPNISERIVEVEGLKLFPERPEMHFKAEQVLLTKKEAILAEMLLAKFPRTASREDLLAA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  VEEN +  +I++LRKK       + +++ R LGY ++
Sbjct: 183 LWD-DESFVEENTLNVNITRLRKKFNELGIQNGIETVRGLGYRLN 226


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +                R D   ++  L        E
Sbjct: 23  LVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVML--PDVDGFE 80

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR  +
Sbjct: 81  VLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAGM 140

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +  +  +        D  +         L   E  +L YLM N  + ++K QI   +
Sbjct: 141 AAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 201 W-NYDFGGQSNVVELYVSYLRKKI-DAGYAPMIHTVRGAGYVL 241


>gi|316935886|ref|YP_004110868.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603600|gb|ADU46135.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S+       +    D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGLDFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNILKRTAP 138

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          GP     +  +     E+  L  RER +L  L A  G+ V +  +    
Sbjct: 139 APAAKAETVAFGPYVFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRGDL---- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                    E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 195 --SGAGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRL 236


>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 234

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +   +       +      D+  ++           
Sbjct: 14  ILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVM--MPELDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   
Sbjct: 72  STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 131

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + R      +     V   GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 132 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LR  L        + + R +GY  +
Sbjct: 192 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 233


>gi|227537811|ref|ZP_03967860.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242425|gb|EEI92440.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + V         +   ++    +      +  S   D+  ++  L   G   L
Sbjct: 3   ILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGSYDLIILDVML--PGMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR   +  P++ +S     +  +D F S  DD + KP +  E+ ARV+   R++ 
Sbjct: 61  RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   E   +           +  + Q     L   E R+LE+LM N+ + V++  I  
Sbjct: 121 QTSKVEENSNLEFADLTLDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G+ D  +  NVV+ +I+ LR K+        + +   +GY +
Sbjct: 181 SVWGM-DFNLSTNVVDVYINYLRNKIDKGYNKKLLHTVVGMGYVL 224


>gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 273

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 86

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 246


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +           L      D   ++  L   G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +             +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YRHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
 gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +   +  +            +  ++  L G  G + 
Sbjct: 5   ILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
           ++  +   +++ +P+I ++   + +  +   ++G DD + KP      +    A   R  
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + +  + +    Q +   L   E ++L + M +  K  ++ Q+ + I+ 
Sbjct: 124 EQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIWH 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE   V+S+I +LR+ L      D + + R  GY  
Sbjct: 184 N-DLEVEYRTVDSYIRRLRRNLAPFQCEDYIQTVRGSGYRF 223


>gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19]
 gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     A   D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGL--PKIDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A + R  
Sbjct: 61  SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L YLM ++ + +++T++   +Y 
Sbjct: 121 GHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+ N    D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFMGRLRKKIGN----DRIETVRGLGYRL 216


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   ++         + R D   ++      G     
Sbjct: 16  LVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVM--MPGMDGFG 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L + +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 74  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++  + R +   I +  D R+    G++  L   E  +L Y M N G  ++K +I   
Sbjct: 134 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 235


>gi|222082591|ref|YP_002541956.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727270|gb|ACM30359.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+ +   N          +A  D+  ++      GE  L 
Sbjct: 8   LVVDDHKEIRDLLAKYLAKNGLRVSTANGGAEMRQQLRTATIDLVVLDIM--MPGEDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP++ ++        +   + G DD V KP + RE+LAR+ A+ RR   +
Sbjct: 66  LCRSLRQTSMVPIVLLTAVSDETDRIIGLELGADDYVTKPFNPRELLARIRALLRRANAT 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQI 173
            +       + +          +            L   E R+L  L++  G  + + Q+
Sbjct: 126 ASVTSDPDHKRYRFANWTLDVSQRSLVDASGSEAALGTAEFRLLLALVSRPGVVLTRNQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G   + V +  +++ +S+LR+++ +       + +    GY+ 
Sbjct: 186 LDITAGRSAQ-VFDRSIDNLVSRLRRRIEDDPQQPTLIKTVWGDGYTF 232


>gi|152994242|ref|YP_001339077.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835166|gb|ABR69142.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 243

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD +++++   + F ++G ++ G ++ E  E L S    D+  ++  L   G+  L
Sbjct: 8   ILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRL--PGKDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R+ S+V +I ++        +   + G D+ V KP + RE+LAR   + RR++ 
Sbjct: 66  TLTRELRSRSEVGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLIRRVRN 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-----------PRRERRILEYLMANRGKRVAK 170
               A+                     +              E ++L  L AN G  + +
Sbjct: 126 QRELAKKPIEEPVFRTIGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLLALKANEGVALTR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
            Q+   I         +  ++  I ++R+KL  +      + +   +GY +  N
Sbjct: 186 DQLMDRIKNRT-WNATDRTIDVLIGRIRRKLSEDPHCPQMIITVHGVGYLLSNN 238


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E  N       L      DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLML--PELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R   + P+I ++   S+   +   D G DD + KP          R +L R+A  
Sbjct: 63  VARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  + L       +E  N+      L +    D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTLTLLRYHQFEVEWVNNGVDGLSLLAKHNFDLVLLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           ++ R IR  S +P++ IS    LQ  +D  + G DD + KP            +L R  A
Sbjct: 62  QVLRQIRQRSALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLRRGHA 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +LK  +   + G + +  +      +G+   L  RE  IL  L+++  K  +K  + 
Sbjct: 122 ETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKANLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 DKLYD-FDSEVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 222


>gi|261407193|ref|YP_003243434.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283656|gb|ACX65627.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +  G       +  S    + +   + + +   +  +     L        E
Sbjct: 4   LLVEDDKTIASGLEYSLQQERYSTVICHDVASAKQVLAEDIDQFALCLFDLQLPDGSGYE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           L ++++    +P+I ++        +   D G DD + KP   RE    +  V   Y++ 
Sbjct: 64  LCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQKP 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+  +   IR+ +        G    L   E R+L     + G+ +++ Q+   I+ 
Sbjct: 124 SQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLEQIWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  + V +N +  +I +LR+KL +  G    + + R LGY 
Sbjct: 184 VAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYK 224


>gi|210617470|ref|ZP_03291592.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
 gi|210149301|gb|EEA80310.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
          Length = 237

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++  G       +G         +  + L      D+  ++  L        
Sbjct: 13  ILVIEDDEMLNAGLCYNLQMEGFEAAPAFGAKTAKKLWKEKSFDLILLDGNL--PDGDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP++ ++     +  ++ F++G DD + KP + + ++ R+ AI RR + 
Sbjct: 71  AVSREIRKESKVPIVFLTARDMDEDMIEGFENGADDYITKPFNIKIVIQRIKAILRRCEG 130

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +           +    +  G++  L   E ++L     N G+ + +  +   ++
Sbjct: 131 DDTVEKVLQCGNLAVDFESHTVKKHGKLLTLTPTEFKLLHRFCLNPGQVLTRQILLEKLW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 V+E+ +  +IS+LR K+ ++  +  + +    GY 
Sbjct: 191 DQDGNFVDEHTLTINISRLRAKIADE-EYAYIKTIYGGGYK 230


>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
 gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
 gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 222

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +          +G  +    +             DV  ++  L   G    E
Sbjct: 4   LLVEDEARLSATLARGLKAEGFVVVAVGTGVDGLREAVDNNFDVVILDIML--PGHSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +RA +   P++ ++         D FD G DD + KP   R ++AR+ A + R + 
Sbjct: 62  VLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGVP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I   ++  
Sbjct: 122 QRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADILRNVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 H-YHGPDNVVEVYVGYLRRKIDIPFGTNTIETIRGVGYRL 220


>gi|212636733|ref|YP_002313258.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
 gi|212558217|gb|ACJ30671.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G S          +      + D   ++  L   G   +
Sbjct: 6   ILIIEDDKEISRLTAMYLEAEGYSTHIIADGAKAKTTVHHEQPDFIILDLML--PGLDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            + + +R   Q P++ ++      + +     G DD + KP+        +  +   Y+ 
Sbjct: 64  SVCKQLRQFYQHPILVLTACSDDISEVSLLKLGADDYLTKPVRPHVLLARIENLLRRYQF 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + + + G +++ ++ +     G +  L   E  +L  L  + GK V++     A+ 
Sbjct: 124 TAQDSKQLQVGQLKIDTNKQQVSCNGLIPALTTAEYEMLLLLATHAGKIVSREDCCRALR 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           G+ +    +  V+  IS LRKKL +       + + R  GY +
Sbjct: 184 GI-NYDFNDRSVDMRISGLRKKLNDDALPYQTILTIRNKGYML 225


>gi|251797216|ref|YP_003011947.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544842|gb|ACT01861.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 221

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       + G  ++   +         +    +  ++  L   G    
Sbjct: 5   ILLVEDDEHIGNTVKTFLIEAGYKVDVCINGIEAYTNFYNHTYQLVILDIML--PGMSGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKRNNTPILMMTALSDDENQIKAFDAEADDYVTKPFKIQLLLKRVGALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +  D       G   PL  +E  IL  L+ N+G+ ++   I S ++G +
Sbjct: 123 LAKEIRCSNLTILPDDFRALYDGVELPLTLKEFEILMLLVQNKGRTLSHEIILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPE----NMIKTARGVGYRLEED 219


>gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|296131358|ref|YP_003638608.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296023173|gb|ADG76409.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 237

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +          DG      +       +      DV  ++  L   G   +E+
Sbjct: 11  VVDDEQALARLVAGYLERDGFETHVCHDGVGALQVLREVDPDVVVLDLGL--PGLDGVEV 68

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S   +I ++       TL     G DD V KP   RE++ARV  + RR + + 
Sbjct: 69  CRQLRTFSDCYVIMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLMRRPRRTP 128

Query: 124 NRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             A   P            +D R+  V GE   L R E  +L  L A  G  +++  +  
Sbjct: 129 GPAAPAPSAAVTIGSLTVDTDAREVHVDGEPVALTRTEFDVLAALAARPGVVLSRRALIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A++G      +E++V+ H+  +R+KL +       V + R +GY +
Sbjct: 189 AVWGAG-WVGDEHLVDVHVLHVRQKLGDSAEQQRFVRTVRGVGYRM 233


>gi|207724242|ref|YP_002254639.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
 gi|206589458|emb|CAQ36419.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR  +
Sbjct: 61  QVIRELRRRKPTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGPM 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         + +  R     G+   L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|71908759|ref|YP_286346.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848380|gb|AAZ47876.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 234

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 90/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        + + +      +  E    + + D+  ++  L   G+   
Sbjct: 5   ILLVEDDERLAELTAEYLTKNDLEVSIEPRGDTAEARILAEQPDLVILDVML--PGKDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114
           E+ R +R+  +  ++ ++        +   + G DD + KP+  R        +L R+  
Sbjct: 63  EVCRAVRSQFRGVILMLTARDEDFDQILGLEMGADDYIAKPVQPRVLLARIKALLRRLPV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G  ++    R   + G+   L   E  +L  L ++ G  +++  + 
Sbjct: 123 AGEGGSGESESMLFGQFKISQATRTAALAGQTIDLTTAEFDLLWLLASHAGNVLSRDDLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI---DWN 223
             + G+      +  +++ IS+LRKKL  +      + + R  GY     DWN
Sbjct: 183 QELRGIG-FDGLDRSIDARISRLRKKLNDDPENPTRIKTVRGKGYLFSKHDWN 234


>gi|21232823|ref|NP_638740.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767106|ref|YP_241868.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114648|gb|AAM42664.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572438|gb|AAY47848.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++       +  R D+  ++      GE  L 
Sbjct: 9   LVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRITQRRPDLIVLDVM--MPGEDGLS 66

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR +V
Sbjct: 67  AARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQV 126

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++++AE         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 127 TSDQAEPRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 187 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 232


>gi|150018915|ref|YP_001311169.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905380|gb|ABR36213.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  + +D    +   +G         E    +      D+  +   ++       
Sbjct: 5   ILIAEDDNIFRDLVCDIVRKEGYMPIEACDGEEAINMF-FNNNDIDLVILDVMMPVYDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S+VP+I ++     +  +     G DD + KP  +   +AR+  I +++K 
Sbjct: 64  EVLKEIREKSEVPIIMLTALGDEKHEVLGLKKGADDYIGKPFSYEIFVARLNNIVKKVKK 123

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +        R++       +  E   L  +E  +L YL+ N    +++ QI   ++G 
Sbjct: 124 KFSDEIAVGNLRIYQRTHKVVIDDEEIKLNPKEYNLLLYLVGNINTVLSREQILDKVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +   +++HI  LR KL  +   D + + R  GY  + 
Sbjct: 183 YNFDGDIRTIDTHIKTLRAKLSEQG--DWIKTIRGSGYMFEV 222


>gi|317404897|gb|EFV85265.1| two-component system [Achromobacter xylosoxidans C54]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G ++      +         R D +     L+  G   L+
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFR--RHDPAITILDLMLPGRDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119
           + R +RA S  P++ ++        +   +SG DD V KP+  R     +  +   + +L
Sbjct: 63  VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQL 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R E GP+ +    R     G    L   E  +L  L +  G+ + +  + +A+ G
Sbjct: 123 EEPPERLEFGPLVIDRRTRAVVHGGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +    +  V+  +SKLR+KL +       + +    GY  
Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLF 223


>gi|310658379|ref|YP_003936100.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308825157|emb|CBH21195.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       +    +   ++ +    +       +  ++           
Sbjct: 6   ILIVEDDKQIADAIEIYMKNQNYGVFKAHNGQLAIDIFEKEVIHLIIMDVM--MPVMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  TAIMKIRQSSTVPIIVLSAKSEDMDKIAGLNIGADDYVTKPFNPMELIARVNSNLRRYVN 123

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + + E+                + ++  V G        E +IL  LM+N GK  +  +
Sbjct: 124 FSMKKESDKNSKLISIGDIALDDERKEISVLGAPVKTTPIEYKILYLLMSNAGKVFSIDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++     + +   V  HI ++R+KL  N      +     +GY  +
Sbjct: 184 IYEKVWNEPAYSPD--TVAVHIRRIREKLEINPKEPKYLKVVWGIGYKFE 231


>gi|320006986|gb|ADW01836.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 255

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLE 62
           + +D A   +        +G ++   +              D+  ++  +    G  V+ 
Sbjct: 20  VAEDDAKQAELVRRYLEREGHAVTVVSDGLSALEQARQGAPDLLVLDVMMPRADGLDVVR 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R      ++ ++ ++   +    L   D G DD + KP   RE++ARV  + RR +  
Sbjct: 80  ILRA--EERELAVLMLTARATEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRRD 137

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             R + G +             +  V G        E R+L  + A   +  ++ Q+ + 
Sbjct: 138 GAREDGGQVLRVGTLAVDPVRHEVSVDGVGVECTPGEFRLLATMAAEPERVFSREQLLAE 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G FD  +    V+ HI  LRKK+         + +   +GY +
Sbjct: 198 LHG-FDRYISSRTVDVHIMNLRKKIERAPRRPVRLLTVFGVGYKL 241


>gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  +      E    +      D+   +           
Sbjct: 4   ILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFEDKHIDLVICDIM--MPKVSGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R  +   P++ ++   +++     F  G DD + KPI   E+L R+ A+ RR +
Sbjct: 62  ELVKDLRNSNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALLRRSR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +SN         V   D        ++  L ++E  +L  L++   +   + Q+   I+G
Sbjct: 122 ISNEHKLIIGDAVLNYDTLTITKGEQIIELAKKEFYLLFKLLSYPKQIFTRNQLMEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D   +E  V+ HI ++R+KL +   F  + + R LGY  + N
Sbjct: 182 V-DIESDERTVDVHIKRIREKLSDFNEFK-IVTVRGLGYKAERN 223


>gi|253701719|ref|YP_003022908.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776569|gb|ACT19150.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 235

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++    +    +  +L   +S        ++ R D+  ++  L     + +
Sbjct: 12  ILVIDDEAAIRRFLHSALSSEEFTLHEADSGHGGLSAAAALRPDLILLDLGL--PDLEGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  SQVP+I +S        +   D+G DD + KP    E+    R +     +
Sbjct: 70  EVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S     +G + V  + R   V+G    L   E  +L  L+ +  K +  +QI   I+G
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGGEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +  +  V+   IS LRKK+  +      + ++  +GY +
Sbjct: 190 VAYQE-QPQVLRVTISNLRKKIERDPSRPRHITTEPGVGYRL 230


>gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         S   D+  ++      G    
Sbjct: 3   LLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVM--MPGLDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ R IRA    VP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMDV 223


>gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +  IA     G  +    +      L S+ +  +  ++  L        
Sbjct: 5   ILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTEQPALVVLDLML--PDLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R ++    +P+I ++   S +  L  F  G DD + KP   RE++ARV A+ +R   
Sbjct: 63  SICRELKEC-DIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVLKRTGA 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N        G + +         QG    L   E +IL  L A   K   + ++    
Sbjct: 122 TENGARLSFNGGQLVIDDRNYSVVCQGTDIRLTAVEFKILFALAAVPHKTFTREELVVKA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            G       +  ++SHI  +R KL +       + +   LGY  
Sbjct: 182 MGSH-FDGYDRNIDSHIKNIRHKLEDSPKAPTFLITVYGLGYRF 224


>gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G ++    +        S+   D+  ++          L
Sbjct: 5   ILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWM--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTT----LDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            +   IR  S VP+I IS   +         D  D        + +  R           
Sbjct: 63  SMIEHIRLQSDVPIIMISAKSNESDKVTGLQDADDYLAKPFSLEELKARVRSQIRRWQRY 122

Query: 118 RLKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +     +     ++        ++     L ++E  +L+ L  N  +   K  +++
Sbjct: 123 NRVFTAEDMVSYVRGLKIDWVKECVYIEEVEVSLTQKEFALLKVLAQNPFELFTKEALYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++   +   + + V  HI  LR+KL++       + +    GY  
Sbjct: 183 HVWHQVELD-QTHTVTVHIKALREKLQDPVKSPKYIQTVWGKGYRF 227


>gi|288869907|ref|ZP_06112229.2| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM
           13479]
 gi|288869159|gb|EFD01458.1| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    + E         + D++ I+  L        
Sbjct: 9   ICLVEDDREIAKNLVLLLRSEGFAVTHAPTREEAFAAAEEHKFDLALIDIAL--PDGNGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+ A  R+   
Sbjct: 67  TVYTKIKETQDIPVIFLTASGDETSVVTGLNMGADDYITKPFRPRELIARIGAALRKNGR 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E   + V   G   +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 127 LGAVFEICGLFVDVAGGVVKKNGSEVFLSALEYRLLLVFVNNPRSIITRGRLLDELWDAA 186

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R  GY +
Sbjct: 187 GEYVNDNTLTVYIKRLREKIEDDPANPQIILTVRGTGYRL 226


>gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146]
 gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda
           FL6-60]
          Length = 239

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +     G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEDAVINFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
 gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
          Length = 244

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 12  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 70  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 130 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 190 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 237


>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++       + G  ++   +      + ++   D+  ++  L        
Sbjct: 3   LLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVML--PDINGW 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + +  +    P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  EIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +     + V    R    + +   L  +E  +LE+ + ++G+ ++++ I S ++
Sbjct: 121 SSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAVKRLRAKIDQGYEPKLIHTIRGMGYLLE 222


>gi|224543016|ref|ZP_03683555.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524041|gb|EEF93146.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + S +         + D++ ++           
Sbjct: 3   ILVVDDEKEITDLIQIYLENENFTVYKYYSSQDVLRDIDDLKIDLAILDVM--MPDMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
            L   IR   + P+I ++        ++    G DD V KP        R          
Sbjct: 61  SLCNTIRRKYKFPIIFVTAKVEDIDKINGLSIGADDYVTKPFQPLELVARVKAQLRRYKN 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K   N  +   IR+ +D R+     +   L + E  IL  L  ++G  V    +F  
Sbjct: 121 YNEKEEKNEIDFRGIRINNDTREFYFNEKKIELTKTEFAILWELCLHKGNVVKSDDLFLK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++G      + N +  HI  LR+K+ +       +     +GY I+ 
Sbjct: 181 VWGEDYYKRDNNTIMVHIRHLREKMHDGGRNPKYIKKVYGVGYKIEK 227


>gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
 gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
          Length = 257

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 26/242 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D            +      +  E        D+  ++  L   G+  L
Sbjct: 12  LLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDEMEQCLRDNTIDLIVLDLML--PGKDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R +R HS +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 70  TLCRELRVHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRRFNA 129

Query: 121 --------------------VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEY 159
                                 ++                 +  G    L   E  +L+ 
Sbjct: 130 IPEGKSVLKSKADSVEEVQDKESHVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKV 189

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + +  K +++ Q+     G  +  V +  +++ IS+LRKKL  +    + + +    GY
Sbjct: 190 FVEHPRKVLSREQLLDLAKGR-ETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGGGY 248

Query: 219 SI 220
            +
Sbjct: 249 QM 250


>gi|86741715|ref|YP_482115.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86568577|gb|ABD12386.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 265

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 12/223 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVL 61
           ++++D   +    +      G + +   + E         +  D+  ++  L        
Sbjct: 28  LVVEDDDGLGTQLVRGLDRAGYTADRVRTGEAALARVEGVSPPDLVLLDLGL--PDIDGA 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYR 117
           E+ R IR     P+I ++        ++  D G DD + KP    E+     A      R
Sbjct: 86  EVCRRIRERGDTPVIVVTARGDEADRVEALDLGSDDYLVKPFGFAELLARIRAVRRRAAR 145

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S++    GP+ +    R   V G    +  RE  +L +L  + G+   + +IF+A+
Sbjct: 146 ATGESSDVVRHGPLVLDRRSRRISVDGRPVQVTAREYDLLAFLARDPGRVRTRREIFTAV 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D      V++ HI  +R+KL      + +++   +G+ +
Sbjct: 206 WG--DWFGSSKVLDVHIGAIRRKL---GIPELIETVYGVGFRL 243


>gi|322418727|ref|YP_004197950.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125114|gb|ADW12674.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 258

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    S E         + D+  ++  L   G    
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVRMEKFDLIILDVML--PGIGGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
           E+ + IRA  S+VP++ ++   +    +    +G DD + KP + +E           + 
Sbjct: 66  EVCQKIRALDSRVPVLMLTARSAESDRISGLAAGADDYLIKPFNLKEFLLRVSGMLRRSA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R +        G   VF        +     L   E R+L        + + + +I  
Sbjct: 126 WYRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREAEAIPRGEILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++G +    E   +++ I +LRK             + R +GY  
Sbjct: 186 SVWG-YATDAETRTLDNFIVRLRKYFEPEPSRPVFFQTVRGVGYRF 230


>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++      +    +       +  ++  L        
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIML--PELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            + R IR  S VP+I ++       TL  F+ G DD V KP          + L      
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                ++ +   +  I V    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 SAVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I G ++ A ++  + SHI  LR KL  K     + +    GY  +
Sbjct: 183 KILG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|313885741|ref|ZP_07819490.1| response regulator receiver domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619106|gb|EFR30546.1| response regulator receiver domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +       +    S         +   D+  ++  L   G+   
Sbjct: 4   ILVVEDNDDINELLKTILVSH-YQVIQAYSGTEGLAYFHNQAPDLVLLDIML--PGKDGG 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++   IR  S +P+I ++     +T   +  +G DD ++KP    E+LAR+      R  
Sbjct: 61  QVLAEIRQSSNIPVIMLTAISDKKTVTQYLLNGADDYISKPFDEAEVLARIQVCLRNRQA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++     + +  +       G+   L  +E  IL+ L  +  +   K Q++++I+G 
Sbjct: 121 PVQSQLSFCDLELDEETYQLLCCGQAVQLRLKEYDILKLLFNHPQQVFTKEQLYASIWGQ 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            D    +N + +H+S +RKK++      D +++   LG  +
Sbjct: 181 -DYLPGDNTLNTHLSNIRKKIKKISPNHDYIETMWGLGIRL 220


>gi|257094372|ref|YP_003168013.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046896|gb|ACV36084.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 240

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +   ++  +  +  E    + R D+  ++  L   G    
Sbjct: 5   ILLVEDDERLAELTAEYLRKNDFDVDVESRGDTAEARILNERPDLVILDVML--PGRDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------EI 108
           E+ R +R      ++  +        +   + G DD + KP+  R               
Sbjct: 63  EVCRAVRGQYGGVILMFTARDEDFDQIFGLELGADDYIAKPVQPRLLLARIKALLRRAPT 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           L                   G  R+    R   +  +   L   E  +L  L  + G  +
Sbjct: 123 LGSGFTGENPDAEEPAELAFGRFRISQATRSSHLGSDSIDLTTAEFDLLWLLARHAGNIL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++  +   + G+      +  +++ IS+LR+KL +       + + R  GY  
Sbjct: 183 SRDDLLQELRGIG-FDGLDRSIDARISRLRRKLGDDPENPTRIKTVRGKGYLF 234


>gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E          +      DV  ++  L       + 
Sbjct: 5   LVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGL--PDIDGVT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           +   +R     P+I +S        ++  D+G DD V KP    E     R       L 
Sbjct: 63  VLSKLREFCASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRRTGLV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T    V  + R     G+   L   E +I++ L+ N  + V++  +   ++G 
Sbjct: 123 DAPAPVVTDAFEVNFEARTVTRDGKPVRLTPTEWKIVDVLVRNADRLVSQQTLLHEVWGP 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              + E N +  ++++LR+KL  +        ++  +GY  
Sbjct: 183 S-YSRETNYLRVYLAQLRRKLEPDPAHPRYFVTEPGMGYRF 222


>gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 298

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   +     A     G +LE   SL            D+  ++  L       L
Sbjct: 75  LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLML--PDGDGL 132

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +++ H Q+P+I ++    +   +   + G DD V KP    E+LAR+ A  R   
Sbjct: 133 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANP 192

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + +    +  +V G+   L  +E ++L  LM NR   V + +I   +
Sbjct: 193 GAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRL 252

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +          V++ HI  LR+K+         + +    GY  
Sbjct: 253 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRF 296


>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+++           + +  +  +  ++          + 
Sbjct: 7   LVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVM--MPNLDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATYKIREKKNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVSF 124

Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +   +      + ++ +V GE   L   E +I+E LM N G+  +  +I+  
Sbjct: 125 GTFEGIRKVVDLNGLTLEKETKEVKVNGEPVKLTPIEYKIVELLMLNAGRVFSIQEIYEL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       E N V  HI K+R+K+  +      +     +GY ++
Sbjct: 185 VWKEPGYNAE-NTVAVHIRKIREKIEIDAKNPRYLKVVWGVGYKME 229


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E                 DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLML--PELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R   + P+I ++   S+   +   D G DD + KP          R +L R+A  
Sbjct: 63  VARRLRETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|313807086|gb|EFS45581.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
            + + IR  S VP+I ++        +    +G DD V KP         +         
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+  N      + +   +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVCGIGYRIN 230


>gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 234

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + +         G +++ F + E        +  D+  ++  L        E+
Sbjct: 8   VVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S VP+I +S        +   + G DD ++KP         I   +  + +  
Sbjct: 66  CKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKSP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  E   I+V  + R+    G    L  +E      L+    K + ++ I   I+G
Sbjct: 126 IKQDNVIEMFGIKVDFNQRNVFYNGTQIELSPKEFETFALLLKESTKVLKRSYILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  I +LRKK+        + +   LGY ++ 
Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLEE 227


>gi|300767184|ref|ZP_07077096.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300495003|gb|EFK30159.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKYEGYDIQVEYNGRKGLDAALAEDFDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+      
Sbjct: 62  EVCRRVREVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDL 121

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  +    +   EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ESEQQSTKQTTVTYKDLTIEKENLVVKRGDEVINLTKREYELLLTLMENINVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 NKVWG-YESEVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115]
 gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D G  +    +         S   D+  ++  L        
Sbjct: 5   ILVIEDDPDIAQILTTEIEDAGYRVLTAPNRMSGLTCARSEAPDLVILDLGL--PDMHGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+ P++ ++   ++ + +   ++G  D + KP H  E++ARV    R+ + 
Sbjct: 63  EVARRLRRTSRTPIVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVRVQLRKHQQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   +                QG    L  +E  +L  L    G+  ++  I + ++   
Sbjct: 123 AGEVSVGALKLYLQQQVCL-YQGREVRLSPKEFELLGLLAEVPGRVYSRDVIVAELW-PG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V  +VVE H++ LR KLR   G   + + R +GY++
Sbjct: 181 VVDVGRSVVEVHMANLRSKLREVGGAGVLRTVRGVGYAL 219


>gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
 gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +    + G + +          +      D+  ++  L       L
Sbjct: 4   ILVIEDDPEAASYLVKGLSELGHTADQAADGPAGLDMALDRDYDILIVDRML--PKMDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            + + +R      P++ +S    +   +    +G DD + KP    E    +  +A   +
Sbjct: 62  SVIQELRRQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +              PL  RE R+LEYLM N G+ V +T +   +
Sbjct: 122 SASQIETTYTVGDLTLDRMAHSCRRGETEIPLQPREFRLLEYLMQNAGQVVTRTMLLENV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY+I
Sbjct: 182 W-EYHFDPQTNVIDVHISRLRGKIDKGFDTPLLHTIRGAGYTI 223


>gi|254975018|ref|ZP_05271490.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092407|ref|ZP_05321885.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255516824|ref|ZP_05384500.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649926|ref|ZP_05396828.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683080|ref|YP_003214365.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686678|ref|YP_003217811.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520011|ref|ZP_07406358.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209243|emb|CBA62540.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212694|emb|CBE03775.1| two-component response regulator [Clostridium difficile R20291]
          Length = 241

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 11  LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTL--PDGTGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 69  ELCKYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 128

Query: 122 SNNRAETGPIRVFSDGR----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +                     +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 129 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 231


>gi|325916362|ref|ZP_08178637.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325537410|gb|EGD09131.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 242

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++       +  R D+  ++      GE  L 
Sbjct: 12  LVVDDDPDLRKLIGEFLSTHGYQVDVAENVADMRTRMAQHRPDLIVLDVM--MPGEDGLS 69

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 70  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 129

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 130 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 190 LEYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 235


>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R +S+ +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +        G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL    G D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKL----GVDIIQTVRGLGYLL 216


>gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 65  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 125 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 185 FEKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232


>gi|302541993|ref|ZP_07294335.1| DNA-binding response regulator KdpE [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459611|gb|EFL22704.1| DNA-binding response regulator KdpE [Streptomyces himastatinicus
           ATCC 53653]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDAAGDGATALKLAATRHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR + S
Sbjct: 63  VIKGLRGWTRVPILVLSARQTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPS 122

Query: 123 NNRAETGPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   +           +     G    L   E  +LE L+ N G+ V++ Q+   +
Sbjct: 123 GPSDAAVVVETDGFSVDLAAKKAHRDGRDVRLTPTEWHLLEVLVRNEGRLVSQKQLLQEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 WGPS-YGTETNYLRVYMAQLRRKLENDPSHPRHFITEPGMGYRFE 226


>gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + DG +     +G +++  +         ++   D+  ++  L       L
Sbjct: 9   ILVVEDDLSLADGLVTALKREGYTVDLLHDGIHALEALANEVFDLVVLDLGL--PRLDGL 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +RA+ + VP++ ++   +L+  +   D G DD + KP    E+ AR  A + R  
Sbjct: 67  AVLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLRRSY 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + +F        Q +   L RRE  +L  L++  G    +  +   +YG
Sbjct: 127 GRAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHVFTRDVLQQLMYG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  VE N +E HI  LRKKL      + + + R +GY +D
Sbjct: 187 WGD-DVESNALEVHIHHLRKKLF----PELIRTIRGIGYVVD 223


>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +      +       S   D++ I   ++  G+  L
Sbjct: 3   LLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRI-SENPDIALIILDIMMPGKDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            + + +R+    VP++ +S   +    +    +G DD V KP +  E++AR       + 
Sbjct: 62  TVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRRSG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       I   +      + GE   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 ASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEFGILYLLASHPNEVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++   +  V    V  H+S LR K+     G   + +   +GY I
Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIETATGGDKVISTVWGVGYKI 226


>gi|289662595|ref|ZP_06484176.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668461|ref|ZP_06489536.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++       +  R D+  ++      GE  L 
Sbjct: 9   LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRTAMAQRRPDLIVLDVM--MPGEDGLS 66

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 67  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 126

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 127 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 187 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 232


>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  + E      S A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|226324678|ref|ZP_03800196.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758]
 gi|225207126|gb|EEG89480.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758]
          Length = 237

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  LV+ G + +    G +     S              +  ++  +       +
Sbjct: 5   ILVIEDDDLVRQGIVDILELKGWNAVAAKSCSEALVRIRGEEYMLYVLD--MKLPDGNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            L R IR ++  P++ +S Y S +  ++ F++G +D V KP    E +AR          
Sbjct: 63  MLCREIRRYTDNPILFLSAYDSEEFIVEGFEAGANDYVIKPFRTFEFIARIKALLRRTGM 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  K      ++G   +    +  +  G    L R E +IL  L+AN    VA+  +   
Sbjct: 123 QNGKKVKKGIKSGEYELDLQKQILQKDGVRIDLTRTEYQILCSLLANAPNLVAREFLLDT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+   +  +++N +  H+++LRKKL  +   DP+++KR +GY
Sbjct: 183 IWDFNENYIDDNTLSVHMNRLRKKLTAENEQDPIETKRGVGY 224


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 5/216 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L DD A +          +G ++   +              D++ ++      G   L+
Sbjct: 9   LLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWN--MPGMTGLD 66

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P+I I+    +   +   ++G DD + KP + RE+LAR  A+ RR + 
Sbjct: 67  ICRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQG 126

Query: 122 SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++        V +       + G    L  RE  +LE  M +  + +++ Q+   ++G 
Sbjct: 127 FSSDVLQVGDLVLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            D   +ENVV+ ++  LRKKL        + + R +
Sbjct: 186 DDYFGDENVVDVYVRYLRKKLEATGSQRVIQTVRGV 221


>gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +    +     DG++L     L            DV  ++  L       L+
Sbjct: 7   LLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGL--PDGSGLD 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           L + +RA   +P++ +S +      +   + G DD ++KP   RE+LARV +     R+ 
Sbjct: 65  LCKELRAAGSMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARMP 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP  + + G+   + G    L RRE  +L  L+ +RG+  ++ ++  A++G 
Sbjct: 125 PAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVWGA 184

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            D    +  V++HI  LR KL       D + + R +GY ++
Sbjct: 185 -DSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLE 225


>gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
 gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
          Length = 243

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  ++     E  +   +    D+  ++      G+   
Sbjct: 7   ILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIM--MPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S VP+I ++        +   + G DD + KP   R++LAR+ AI RR KV
Sbjct: 65  TLCQHIRKTSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILRRSKV 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----------FPLPRRERRILEYLMANRGKRVAKT 171
           S+N+      +  S                     F L   +  +L   ++   + + + 
Sbjct: 125 SDNQHSNPSAKFISFSNWRLDTTAHRLVNVLNNEAFELTSGDYSLLMLFLSRPNQILDRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I  A  G  D    E  ++  +S+LR +L +K      + + R  GY  
Sbjct: 185 TISCATRGR-DAQPSERGIDVALSRLRNRLGDKGRTQRLIKTSRGNGYIF 233


>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 258

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  + +++ +   +        +  ++      G    +
Sbjct: 33  LIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIM--MPGMDGFQ 90

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  +++P++ ++      + +    SG DD + KP    E +ARV ++ RR    
Sbjct: 91  VLEKIRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTNF 150

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N+  E           +  + R    +     LP +E  IL Y   N+GK + K QIF  
Sbjct: 151 NSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFEK 210

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++       ++N + + ISKLRKK+ +       + + + +GY  
Sbjct: 211 VWQEP-YVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRF 254


>gi|271498801|ref|YP_003331826.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342356|gb|ACZ75121.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++   +     +       D   ++  L   G    
Sbjct: 3   ILVVEDDGSTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHSYDAIILDVML--PGLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           ++  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+   + R + 
Sbjct: 61  QIIEMLRKKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +R+    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGYVCE 220


>gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   +              D   ++  L   G   L+
Sbjct: 6   LIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEYDTLVLDIML--PGMMGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117
           + R IR  +  P++ ++        +   + G DD + KP + RE           +   
Sbjct: 64  VLRKIRDFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILRRSQLT 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S      G   + S  R    +G    L   E  +L  L+   GK V K  +    
Sbjct: 124 DTNESQTEVSVGSTTLNSANRTAIHRGVSLNLTSAEFNLLMILLKRAGKIVDKDTLSQEG 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G    A +   V+ H+SK+R+KL N  G + + S R LGY  
Sbjct: 184 LGRPLSAYD-RSVDVHVSKIRRKLANAGGKELIVSVRGLGYQF 225


>gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    S E         + D+  ++  L   G    
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVML--PGIGGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
           E+   IRA  S+VP++ ++   +    +    +G DD + KP + +E           + 
Sbjct: 66  EVCERIRALDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R +        G   VF        +     L   E R+L       G+ + +  I  
Sbjct: 126 WYRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +++G +    E   +++ I +LRK             + R +GY    N
Sbjct: 186 SVWG-YSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRN 233


>gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVAA 114
           + R +R  ++VP++ +S   +    ++  D+G DD V KP    E        +      
Sbjct: 63  VIRGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRRAEPV 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       ET    V    +     G    L   E  +LE L+ N G+ V++ Q+ 
Sbjct: 123 GQEGGAEDIALVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNGGRLVSQKQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 QEVWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 229


>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  L   +       +  + + D+  ++          +
Sbjct: 6   ILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVM--MPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  +  P+I +S        +     G DD V KP    E++AR+ +  RR K 
Sbjct: 64  EACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYKH 123

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+R+      +  D            V GE   L  RE  +L  L  NRG  ++  +I+
Sbjct: 124 LNSRSVRNENEIQIDELIVNVASHRVTVAGEEIKLTPREFALLHMLAINRGLVLSMDKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++        +N V  HI KLR+K+  +    + + +   +GY I+
Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|313892067|ref|ZP_07825665.1| putative transcriptional regulatory protein ResD [Dialister
           microaerophilus UPII 345-E]
 gi|329120910|ref|ZP_08249542.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965]
 gi|313119519|gb|EFR42713.1| putative transcriptional regulatory protein ResD [Dialister
           microaerophilus UPII 345-E]
 gi|327471369|gb|EGF16820.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E    + ++   D   ++  L    E   
Sbjct: 4   ILIIEDDKNMAEMERDFLEGSGYIPHVAKNGEEALKIMNNVNVDAIILDVNL--PEEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  +  P+I  +        +     G DD + KP     ++A + A     K 
Sbjct: 62  SLCRKLRDLTDSPIIFATGRDDDADIVRGLGLGADDYLVKPFRGTVLVAHLKAQLATHKR 121

Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N+    P                 R   +  +   +  +E  +L +L+ +  +  +K 
Sbjct: 122 LINKNNYKPCIEDGLTIGELTIRPKARQILLDNKEVIITGKEFDLLLFLVEHPNEVFSKE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           Q+F  I+GL D   E   V  HI++LR KL++  G     +++    GY  
Sbjct: 182 QLFEQIWGL-DPIGEPATVTVHINRLRDKLKSVSGRPYEKIETVWGAGYRF 231


>gi|229588249|ref|YP_002870368.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360115|emb|CAY46969.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   S      L    R ++  ++  L        
Sbjct: 3   ILVVEDEQKTADYLQQGLTESGYVVDCAASGIDGLHLARQHRYELVILDVNL--PNTDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+   +R      ++ ++    L   +   D G DD + KP    E+LARV         
Sbjct: 61  EVLEQLRRDGNQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +               L  +E  +L  LM   G+ + +TQI S ++ 
Sbjct: 121 IPVPDVLRVSDLELDPRRHRAYRGDRRIDLTTKEFALLHVLMRQAGEVMTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ ++     + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRGKVDDQSEVKLIHTIRGVGYVLE 221


>gi|168184286|ref|ZP_02618950.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794746|ref|YP_002862298.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672615|gb|EDT84576.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263561|gb|ACQ54594.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +        G  G         E         + ++  ++  L        
Sbjct: 5   IMIIEDDKNIAKLLGEHMGKYGYEALVVKDFEKILETFEIEKPNLILLDINL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
              R IR  S  P+I IS   S    +   +SG DD + KP ++       +  L RV  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y          +   +  + +        +   L ++E  +L+ +M    K   + ++ 
Sbjct: 123 DYATNSQVERILDVEGLLFYPERLQVHFNEKETMLSKKEGDLLDAMMKIYPKVATREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+   +  V+EN +  +I++LRKKL +    + +++ R  GY ++ 
Sbjct: 183 EKIWD-DNTFVDENTLNVNIARLRKKLLDLGIKNSIETVRGAGYRLNV 229


>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGIGYR 219


>gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630]
 gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +  S++          +  +   D+  ++  L        
Sbjct: 3   ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKS--SGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ + IR+ S VP+I  +   S    +   + G DD + KP          +  + R   
Sbjct: 61  EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   +   + +          G    L   E  I++ L  N+G+  +K Q++
Sbjct: 121 YSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           +AI+        ENV+ +HI++LR KL + +   + + +   +GY ++ 
Sbjct: 181 NAIWKEP-YYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEE 228


>gi|291548309|emb|CBL21417.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +      G DG  +    + +  + ++     D+  ++      G    
Sbjct: 14  LLVVDDEVSILELIKNSLGKDGYLITVCQNADDVD-IKKLHFYDLILLDVM--MPGTDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--AAIYRRL 119
           E  + IR     P++ ++     +  L     G DD + KP   +E+ ARV       + 
Sbjct: 71  EFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHLRREKR 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +  +    IR     +   V  +  PL + E  I EYL  NRG+   K QI+ A++G
Sbjct: 131 EHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIYEAVFG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + + + +HI  +R KL       P+ +   +GY  +
Sbjct: 191 -FDGIGDNSTISTHIKNIRAKLE-HFKISPISTVWGIGYKWE 230


>gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G +++  +  E   W  S    DV  ++  L   G     
Sbjct: 4   LLVDDDRRLVGLLARGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIML--PGLNGYR 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +   +R    + P++ ++         +  D+G DD + KP  +  ++AR+ A   R   
Sbjct: 62  VCARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARLRALARRGAA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V    R    +G    L  +E  +LE+L   +G+ V K ++ + ++  
Sbjct: 122 GRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKDEVLAGVWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                + N+VE ++S LR+K+    G   + + R +GY ++ 
Sbjct: 182 A-READHNLVEVYVSALRRKIDLPFGTFTITTVRGVGYRLEE 222


>gi|163814357|ref|ZP_02205746.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759]
 gi|158449992|gb|EDP26987.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 4   ILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIM--MPVMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 62  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 122 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 182 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 219


>gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
 gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +++D   +++  +    + G ++E F + +      +    D+  ++  L    G ++
Sbjct: 5   IYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSKTAEKVPDLVLLDIMLPDMDGLEI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++  R      ++P+I ++   +    +   D G DD + KP    E+++RV A     R
Sbjct: 65  VKKLRSRPDTVRIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G I + S+ R+  V GE+  L  +E  +L+ LM N G  + +  I S ++
Sbjct: 125 ALQDDKQLVIGDITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D   E   ++ HI  LR+KL        + + R +GY ++
Sbjct: 185 GT-DYEGESRTLDMHIKTLRQKLGEAGN--MIKTVRNVGYKME 224


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      DV  ++           
Sbjct: 12  LLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVM--MPEMDGF 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 129 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 189 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229


>gi|110566635|emb|CAL23368.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus amyloliquefaciens]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
              +           G  +   +  E    L  +   D+  ++  L       +++ + +
Sbjct: 1   EPSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVML--PKVDGIDVCKQL 58

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----------Y 116
           R    + P++ ++        +   + G DD + KP   RE+ ARV AI           
Sbjct: 59  RQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADISSLSQ 118

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R +  + +   G +++  +  +   + E   L  +E  +L YL  ++G+ + +  + SA
Sbjct: 119 GREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRDLLLSA 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           ++  +D A +  +V+ HIS LR K+ +       + + R LGY ++ 
Sbjct: 179 VW-NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEE 224


>gi|119944747|ref|YP_942427.1| response regulator BaeR [Psychromonas ingrahamii 37]
 gi|119863351|gb|ABM02828.1| response regulator BaeR [Psychromonas ingrahamii 37]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F   G      ++         + + D+  ++  L   G   L
Sbjct: 8   ILIVEDEPALASVLCEYFIQSGFQTHIIDNGLEVIDWVKNYQPDLLILDLML--PGRNGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++ R +R  SQVP++  +        L   + G DD + KP   RE++ RV  I  R  +
Sbjct: 66  DIYRELRTFSQVPVVMATARIDEIDRLLGLELGADDYICKPYSPREVVIRVKNILRRSKE 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +++        +  +   L   E R+L     +  +  ++ Q+ + IY  
Sbjct: 126 GNGTLQGYAGLQIDEQKMMASLNQQTIILTPAEFRLLSVFNKHPEQVFSREQLMTQIYS- 184

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               V +  ++SHI  LRKK+++     + + S   +GY +
Sbjct: 185 DGRIVTDRTIDSHIKNLRKKMQDVAPESECIKSIYGIGYKL 225


>gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRAST 128

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    TG             +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLTTGASPTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYS-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2]
 gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
 gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L R +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  ALCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +    D  + +  G+   L     ++L  LM      V +  +  A++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVKRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
           G  D+  + + + SH+ +LR+ +        + +   +GY +  + N
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFSVALLHTVHGVGYRLAEEPN 225


>gi|320322852|gb|EFW78943.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVERDGIEGLHLALENDHAIIILDVML--PGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|319936036|ref|ZP_08010459.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1]
 gi|319808986|gb|EFW05493.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1]
          Length = 220

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 98/219 (44%), Gaps = 3/219 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +++    L    G  ++    ++    L  S    +  +   +       
Sbjct: 1   MILIVEDDIAIQETLKELLCMKGYQVQQAYHMKEALLLDKSH---IDVMIIDIQLPDGNG 57

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L + +R  SQ+P++ ++     QT ++  ++G DD + KP    E+LAR+  I RR++
Sbjct: 58  ITLCQQMRQQSQIPILFLTAKDDEQTIVEALNAGGDDYITKPFRANELLARLNCIMRRIE 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  +T  + +           +   L      IL  ++ N+G  + + ++   I   
Sbjct: 118 HNHDIIQTNDLSIDIRKYRVMKNNQEIVLSAIGYEILFLIVQNQGMVITRERMIEFIEEK 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
               +E+N V  H+ +LR+KL      + +++ R +GY 
Sbjct: 178 TGNYIEDNTVSVHMKRLREKLGQYQQQEYIETVRGIGYR 216


>gi|312131700|ref|YP_003999040.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311908246|gb|ADQ18687.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 220

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   V         ++   +      +    + S    D+  ++  L    +  LE+ 
Sbjct: 2   IEDDHQVCAIVKKGLEEENFEVTIATDGDTGLSMASEENYDLIILDIML--PKKSGLEVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLKV 121
             IR  S +P++ ++   + +   +  + G DD + KP    E++AR+        R + 
Sbjct: 60  TRIRHTSNIPILLLTALGTAENVAEGLNRGADDYLVKPFKFIELIARINSLLRRAGREEE 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   + + +  +   V  +   L   E ++L  LM    K  ++ +I   ++   
Sbjct: 120 KSEVYKFSGVVLNNTSKTVTVNDQEVALTSTEFKLLLLLMKMPNKVYSRQEILERVW-EV 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +  NVV+ +I+ LRKKL        + +   +GY +
Sbjct: 179 NFDLGTNVVDVYINYLRKKLDKHGSPKIIHTVVGMGYVL 217


>gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 244

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +++        +G   + F++ +       +   D+  ++  +       L
Sbjct: 14  IYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEFKNQEPDLMILDIMMR--EMDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR  S VP+I +S        +   + G DD + KP   RE++ RV  I +R+  
Sbjct: 72  ELCREIRKTSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILKRVSQ 131

Query: 122 SNNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + N                   ++ D +  + +    P   +E  ILEYL+ N    +++
Sbjct: 132 NANADSKDKKEEPKVLKVSDFEMYPDIKLAKYKNTEIPFTIKEFDILEYLLRNISTPLSR 191

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            QI + I+G  D    E  V+  I ++RKKL+       + +   +GY ID N
Sbjct: 192 EQITAKIWGN-DRDGYERNVDDAIKRVRKKLKEYRVNLEIRTVWGIGYRIDVN 243


>gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 23/235 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++    A    +G    G  S E    L  ++  D+  ++  L   G    
Sbjct: 8   IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLML--PGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR  ++VP+I IS   +    +   + G DD + KP   RE++ARV    +R + 
Sbjct: 66  ELCRRIRNEAEVPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQRQQR 125

Query: 122 SNNRAETGPIRVF----------------SDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           +          V                  + R    QGE   +  +E  +L     +  
Sbjct: 126 AIAPDGVSSAGVDAASSAARILVNGLALIPEERRVFWQGEEVEMTNKEFDMLRVFTEHPN 185

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + ++ + ++G  D    +  V+  I ++RKK        P+++    GY +
Sbjct: 186 RAFTRGELLTLVWG-DDYFGSDRAVDHLIKRIRKK----ADMLPIEAVWGHGYRM 235


>gi|262280150|ref|ZP_06057935.1| transcriptional regulatory protein rstA [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771423|ref|YP_003733449.1| Transcriptional regulatory protein rstA [Acinetobacter sp. DR1]
 gi|262260501|gb|EEY79234.1| transcriptional regulatory protein rstA [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701511|gb|ADI92076.1| Transcriptional regulatory protein rstA [Acinetobacter sp. DR1]
          Length = 238

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              S + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|226312683|ref|YP_002772577.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095631|dbj|BAH44073.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 237

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +++        +G   +    S +    + +S + D++ ++  L        
Sbjct: 10  LIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALEICASDKPDIAILDVML--PDGDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  SQ+P+I +S     +  L     G DD + KP   RE++ R+  I RR+  
Sbjct: 68  GLLTSIRRFSQIPVIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYA 127

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +     +  +          + L  +E  +L  L  NRG+ V    +  +
Sbjct: 128 PPQIDRLPVFQLGDSTIDLEAAIVTRDHHEYALTAKEHALLRKLYENRGRIVTSDALCQS 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  D    EN +  H+ ++R+K+       + + + R LGY +
Sbjct: 188 VWG-DDYYGYENTLMVHMRRIREKIEPCPSTPEFLLTVRGLGYKL 231


>gi|239826047|ref|YP_002948671.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806340|gb|ACS23405.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +                     +  +         +  ++  L        
Sbjct: 4   ILIVEDDVKIAFMLKEHIEKYEYRAHIAEQFDDIKKEFIKYHPHLVLLDINL--PRFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
              R IR  S  P+I IS        +   ++G DD + KP +   ++A      R    
Sbjct: 62  YWCRQIRTISLCPIIFISARSHEMNQIMAIENGGDDYITKPFNLDLVMAKIKSLLRRTYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  E   + +  D    + + +   L ++E  +LE L    GK V++ ++  
Sbjct: 122 PYAAPAEPHVYEVSGLYLLYDRHMVQWKEKTIELTKKEFTLLERLAKKSGKIVSREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++   +  V++N +  +I+++RKKL+       +++ R +GY +
Sbjct: 182 SLWDDTEF-VDDNTLSVNITRVRKKLQQIGIEQAIETVRGVGYKL 225


>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G ++           +       +  ++          +
Sbjct: 6   ILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIM--MPKLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R    VP+I +S        +   + G DD V KP +  E++ARV ++ RR  +
Sbjct: 64  ATITKVREKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRRYTI 123

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N +E     +          D  +  V GE   L   E +IL+ LM+   K  +  +I
Sbjct: 124 LGNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVFSMEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++G     + +N V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 YEKVWGELSY-MTDNTVAVHVRHIREKIEIDPKNPKYLKVVWGIGYKIEK 232


>gi|167032979|ref|YP_001668210.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859467|gb|ABY97874.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  ++                 D+  ++  L   G+  L 
Sbjct: 2   LIVDDDVEVLDLLQKFLRQHGYEVDVACDGNALWQALERRVPDLVILDVML--PGDSGLV 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + + A  +V +I ++    L   +   + G DD + KP   RE+LARV A+ RR    
Sbjct: 60  LCQRLLADYKVAVIMLTAMGELSDRVVGLELGADDYLTKPFAARELLARVRAVLRRAGEG 119

Query: 123 NNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A +    +   G             +  + PL   E  +L     +  + +++ Q+ 
Sbjct: 120 AGGATSHASALEFAGWQLDVVRRELRSPENVMIPLSNGEFELLLVFAEHPRRVLSRQQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               G       +  V+  +S+LR+KL  +      + + R +GY  
Sbjct: 180 DLARGEA-YDAYDRSVDVQVSRLRRKLETDSGNEPLIRTLRNVGYLF 225


>gi|46200151|ref|YP_005818.1| phosphate regulon transcriptional regulatory protein phoB [Thermus
           thermophilus HB27]
 gi|55980114|ref|YP_143411.1| phosphate regulon transcriptional regulatory protein PhoB [Thermus
           thermophilus HB8]
 gi|46197779|gb|AAS82191.1| phosphate regulon transcriptional regulatory protein phoB [Thermus
           thermophilus HB27]
 gi|55771527|dbj|BAD69968.1| phosphate regulon transcriptional regulatory protein PhoB [Thermus
           thermophilus HB8]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   ++ G        G  +    + +    L   A   +  ++  L    G ++
Sbjct: 4   LLLVEDEPSLRLGLRLALEGAGHRVLEAATAQEAWPLLREAE--LVVLDWMLPDEPGVRL 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R     S +P++ ++    ++  ++    G DD + KP    E+LAR+ A+ RR  
Sbjct: 62  LDRMRQGPYES-LPVLMLTARAGVRDRVEGLSRGADDYLVKPFAVEELLARLEALLRRAG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +  +  +  ++G   PL RRE  +L YL    G+   + ++  A++G 
Sbjct: 121 KRKVLRRGPL-LLDLERMEARLEGNPLPLTRREFALLAYLAERPGRVCTREELLEAVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            D       V+ H+ +LR+KL  +      +++ R +GY  
Sbjct: 179 PDYLGTPRTVDQHVLQLREKLGEDPKAPRFLETVRGVGYRF 219


>gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++      F      +    + E           DV  ++  L   G    +
Sbjct: 6   LIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVML--PGISGFQ 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------I 115
           +   +R     V +I ++        +   + G DD V KP +  E++ R  +       
Sbjct: 64  VCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLGG 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  ++G  ++    +    + +   L  +E  +L+  + N+ K   + ++  
Sbjct: 124 KSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            I+G +D   +  +V+ +I +LR K+ +K      +++   +GY 
Sbjct: 184 KIWG-YDYVGDTKIVDVNIRRLRSKIEDKDSHGMYIETVWGIGYR 227


>gi|170728304|ref|YP_001762330.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813651|gb|ACA88235.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D G  +   +  +F   + +  + D+  ++  L    +   
Sbjct: 7   ILVVEDDISLAEWVSDYLLDHGYQVTVASQGDFALEMIAEEQPDLVLLDVML--PVKNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--REILARVAAIYRRL 119
           ++ +  RA    P++ ++        +   + G DD + KPI         +        
Sbjct: 65  DVCKEARAFYAGPILFMTACVEDGDEIQGLEVGADDYLTKPIRPKVMLARIKALLRRAID 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     + + +  +   V  E+  L   E  +   L    GK V++  + S + G
Sbjct: 125 DKLKQQLVFESLILNAAAKSVMVDDELLDLNANEFDVFWLLALQAGKVVSRIDLVSELRG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + +    +  V+  +S+LRKKL+        + + R  GY  
Sbjct: 185 I-EYDGLDRSVDIRVSRLRKKLQEAKSQPYKIKTIRGKGYLF 225


>gi|54024684|ref|YP_118926.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016192|dbj|BAD57562.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +++DD   ++        D+G  +   N  E       S    DV  +E  L       
Sbjct: 8   LMIVDDDDRIRRELREALEDEGYDVSEANEAEDALTYLRSNGAPDVMIVELMLG--DMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------ 114
            E  R IR    VP+I IS        +   ++G DD V KP   +EI AR+ A      
Sbjct: 66  FECIREIRRDHDVPIIVISSRDDTHDVVAALEAGADDFVTKPFEIKEISARMRALRRRAK 125

Query: 115 ----IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +V+ +  E  P+ +  +G       E   L   E R+L  L    G+ +++
Sbjct: 126 LAAERDAPREVALDAHEEAPLMLDREGGAVRRGDEEIKLTLTEFRLLCELADVPGRVLSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++   +   +E +V+ H+ +LR K+  +      V + R LGY +D
Sbjct: 186 AQLLEKVWDE-NFFGDERIVDVHMRRLRTKIELDPSDPQIVVTVRGLGYRLD 236


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I     +   +           +  + R ++  I    +      L
Sbjct: 5   ILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR +  +P+I ++    +   +   DSG DD + KP    E    +  V      
Sbjct: 65  EVLRRIRKNDDIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLRHESH 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + + +  R      ++  L +RE  +L  L+ + G+ + + ++  A++
Sbjct: 125 HHQQSELYTVEDLTLNTKSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 185 GV-DFEGQPNVVDVYIRYLRNKVDRGYSKQLIHTVRGVGYVMSGN 228


>gi|260583568|ref|ZP_05851316.1| DNA-binding response regulator VncR [Granulicatella elegans ATCC
           700633]
 gi|260158194|gb|EEW93262.1| DNA-binding response regulator VncR [Granulicatella elegans ATCC
           700633]
          Length = 218

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++G      +    +   +  +    L  S    +  ++  L    +  L
Sbjct: 3   ILMVEDEAPIREGVCDYLIECDYEMIAASDGQEAIDLFDSNEVHLVLLDIQL--PKKNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S +P + ++ +   +  L  F    D  + KP     + AR+ A+ +R   
Sbjct: 61  EVLEYIRRKSSIPALMLTAFSDEEYQLKAFSQLADGYIEKPFSLPVLKARIDALMKRYYP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      V        + GE   +  +E  IL+ L+ + G+ +++ QI   ++   
Sbjct: 121 DTEVFTYQNTSVNFSSYTATLFGEKVDMNAKEIEILKCLVDHEGQALSRQQIIDQVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ ++ +LRKKL      D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYMKELRKKL----ALDCIITIRNVGYKLE 216


>gi|302875981|ref|YP_003844614.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307686697|ref|ZP_07629143.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578838|gb|ADL52850.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G ++      E        +   +  I   ++   +   
Sbjct: 4   ILIADDNDEIREIVGVLLESEGYNVIEAVDGEDAINKVDGS---IDLIILDVVMPKKTGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  +  P++ ++           F +G DD ++KP  + E+++RV A+ RR  V
Sbjct: 61  KACIEIREKTSAPILFLTAKSQDSDKCMAFSAGSDDYLSKPFSYTELVSRVKALLRRYYV 120

Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +              ++ +   +  +  +   L   E  IL  +  NR K  +   +
Sbjct: 121 YKGKETIDVTGSIAINGLKISTTSNEVSIDDQEIVLTEIEYNILLVMSQNRKKIFSVQNL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+         N V  HI  LR KL  +      + +    GY I+
Sbjct: 181 YESIWKEPYFYSCNNTVMVHIRNLRSKLELDPQNPKYIKTVWGKGYRIE 229


>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
 gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       + + +    S E         R D+  ++  L   G    
Sbjct: 8   ILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFERFDLIILDVML--PGIDGF 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115
            + + +R   ++VP++ ++     +  +     G DD + KP +  E           + 
Sbjct: 66  VVCKKVRELDARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRRSA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R          G  +V+      +       L   E ++L       G+ + +  +  
Sbjct: 126 WYRPDPIEEGYRFGENQVYLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKVLLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +    E   +++ I +LRK    +        + R +GY  
Sbjct: 186 NVWG-YASDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRF 230


>gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
 gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 82/231 (35%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ ++          ++
Sbjct: 7   LIVEDDKEIREGVEIYLKSQGYVVFQAADGVEGLEVIEKEEIHLAIVDVM--MPRMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILARV 112
           +   +R     P+I +S        +   + G DD V KP                  R 
Sbjct: 65  MTVKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRRYRRF 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + + N    G + +  +  +  V GE+  +   E +IL  LM N G+  +  +
Sbjct: 125 MEKLGDKEKTQNIHVIGGLELDEERVEVRVDGELVKVTPMEYKILLLLMKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + +  H+  +R+K+  N      +     +GY I+ 
Sbjct: 185 IYERVWN--ERAVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 233


>gi|153007816|ref|YP_001369031.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151559704|gb|ABS13202.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG     G  G +++  ++    E   ++       ++  L       L
Sbjct: 3   ILVVEDDAILLDGLTVGLGLAGFTVDAVSNCGDAEAALAAQNYHAVVLDLML--PDGSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R    + P++ ++    +   +   D+G DD V KP    E+ ARV A+ RR  
Sbjct: 61  DILRTMRRGRDETPVLLLTARDQVPERIAGLDAGADDYVGKPFDLHELAARVRAVARRGA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E   + +        + GE   L RRE  IL  LM       +K+ +  A+YG
Sbjct: 121 GRANALLEWRGVELDPAEMSVLLHGEPVRLTRREFSILRALMERPTATFSKSSLEEALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE HI  LR KL    G D +++ R +GY +
Sbjct: 181 -WQEEVESNAVEVHIHHLRSKL----GSDYIETVRGVGYRL 216


>gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e]
 gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988]
 gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S]
 gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161]
 gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e]
 gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes]
 gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
 gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D          +     +++     +    R D+  ++  L   G   +E
Sbjct: 7   LVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIIIDRRPDIVLLDWML--PGGSGIE 64

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           L R ++      ++P+I ++   S    +   D G DD + KP   RE++AR+ A     
Sbjct: 65  LLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+ R E G + +        + GE   +   E ++L + M++  +   ++Q+   +
Sbjct: 125 GAMPSSERIEAGELVLDMSSHRVFLAGEPLAMGPTEFKLLSFFMSHPERAYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L+N +G     + + R  GY  
Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKALQNDMGDCSHFIQTVRGTGYRF 228


>gi|255525895|ref|ZP_05392822.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510389|gb|EET86702.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  +          ++   +  ++      G    
Sbjct: 5   ILIIDDDKELCLLLQKSVSSENIEADCCHFGTAGLSALKNSEYQLVVLDVM--MPGIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           E    IR  S VP++ ++        +    +G DD + KP +  E +       R    
Sbjct: 63  ETLERIRKKSSVPILMLTSKNDNGCKVRGLRAGADDYLTKPFNIDEFIARVISLIRRYTR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    V  ++ +   + +  D R   +  E   LP +E  IL Y   N+GK + K QI+ 
Sbjct: 123 FNPNGVQASKLDYDGLIIDLDSRTIMIHNETLELPPKEFDILLYCAKNQGKILTKKQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            ++G    A +++ + + IS++RKK+         + + + +GY  + 
Sbjct: 183 EVWGEP-YAYDDSNIMALISRIRKKIEKTPSKPTFIQTVKGIGYRFNK 229


>gi|288940893|ref|YP_003443133.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288896265|gb|ADC62101.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +      L ++   D+  ++  L        
Sbjct: 10  LLIIDDEEQIRRFLRISLRSQGYQVIEAETAGKGLELAATQTPDLIVLDLGL--PDADGK 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA----IYR 117
            +   +R  S VP++ +S   S    +   D+G +D V KP   +E LARV A       
Sbjct: 68  SVLNELRHWSTVPVMILSVRSSESEKVAVLDAGANDYVTKPFGIQEFLARVRALLRLPRA 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G + +    R   V GE   L R+E  I + L++N G+ + +TQ+   I
Sbjct: 128 TERPDAGIYDDGYLHIDLIKRIVSVMGEEVHLTRKEFAIFKMLVSNPGQVITQTQLLREI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G    A + + + + I ++R+KLR        + ++  +GY  
Sbjct: 188 WGPTH-AGDTHYLRNFIGRIRQKLREDTDEPRYLRTEPGVGYRF 230


>gi|269119708|ref|YP_003307885.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613586|gb|ACZ07954.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++   +           +      D+  ++  L    +   
Sbjct: 5   ILIVEDEVNLMEVLEDTLLEENFEIFKAYEGSAAIDMFYEVNPDLVLLDINL--PKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S  P+I ++   +    L     G DD + KP      +  +         
Sbjct: 63  TICKEIRNDSNKPIIIMTARDTELDELKGLSIGADDYITKP--FSLKILTLRIKKLLKIE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +      +R      +  +  +   + ++E   L+Y++ N+GK + +  + + ++G +
Sbjct: 121 NEDYYLYETLRFNFGTYELIIDSQNIEITKKESLFLDYIIKNKGKLLTRDMLLNEVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +  VV++ I + RKKL      D + + R +GY  D 
Sbjct: 180 DFDGDNRVVDTLIKRTRKKLSPYG--DLIKTVRGMGYMFDE 218


>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPTMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 138 QHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 236


>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++ +++   ++ +    +       +  ++          + 
Sbjct: 7   LVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLEREDIQLILMDIM--MPKMDGMT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFQIRQKKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRFTNL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   T               ++  + G    L   E +ILE LM N+G+  +  +I+  
Sbjct: 125 GSAQITEDEIQVRGLTLNKSTKNVAIDGNEVRLTATEYKILELLMENKGRVFSIEEIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  H+ ++R+K+  N      +     +GY I+ 
Sbjct: 185 VWREP-YMNAENTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKIEK 230


>gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 250

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 27/243 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ------SSAREDVSAIEAFLIG 55
            ++I+D A +           G +++   +              +     +  ++  L  
Sbjct: 6   LLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLDLML-- 63

Query: 56  KGEKVLELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                L++ R IR+        P++ ++        +   + G DD + KP   RE+LAR
Sbjct: 64  PDMDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPRELLAR 123

Query: 112 VAAIYRRLKVS-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           V A+ RR   S             +     G + +  D R   VQG    L   +  +L 
Sbjct: 124 VRALLRRHAQSSTSLSTDEGTGSGHPPLHFGSLTIDRDARTVTVQGRSCELTSYQFDLLV 183

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLG 217
            L    G+ + + QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +G
Sbjct: 184 TLAERAGRVLTREQIMEAVRGRELEAFD-RSIDVHMGRIRAAIEADPKAPKRILTVRGVG 242

Query: 218 YSI 220
           Y  
Sbjct: 243 YVF 245


>gi|295093634|emb|CBK82725.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +++D   +++  +    + G ++E F + +      +    D+  ++  L    G ++
Sbjct: 5   IYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSRSAEKVPDLVLLDIMLPDMDGLEI 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++  R      +VP+I ++   +    +   D G DD + KP    E+++RV A     R
Sbjct: 65  VKKLRSRPDTVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G I + S+ R+  V GE+  L  +E  +L+ LM N G  + +  I S ++
Sbjct: 125 ALQDDKQLVLGDITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D   E   ++ HI  LR+KL        + + R +GY ++
Sbjct: 185 GT-DYEGESRTLDMHIKTLRQKLGEAGN--MIKTVRNVGYKME 224


>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 268

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGL--PELDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
 gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G                      +  ++          +
Sbjct: 6   ILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQGEEWHMVIMDVM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
           E  R IR  S+V +I +S        +     G DD + KP             I   + 
Sbjct: 64  EAMRRIREKSKVSIIILSAKGEDSDKIIGLGMGADDYIVKPFSISELIARVKSNIRRAIY 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +   + G I+   +       G+   L  +E +IL+    N  +   K QI
Sbjct: 124 YNETSANNEDKIYQYGDIKFNMNKYIVTKGGKELALTAKEMKILKLFFENPNRVFTKVQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDSNNPKLIETVWGIGYKL 230


>gi|171743213|ref|ZP_02919020.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
 gi|171278827|gb|EDT46488.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         +  R D+  ++  L       LE
Sbjct: 1   MVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIML--PVMDGLE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113
             + I A   VP++ ++        +    +G DD + KP   RE++AR           
Sbjct: 59  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +   +    + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 119 KVIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 179 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 221


>gi|220919080|ref|YP_002494384.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956934|gb|ACL67318.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         ++G  ++   +        ++   DV  ++  L       +
Sbjct: 3   LLLVEDEDRVARVLARGLAEEGHQVDVCGTGLAAREQATTIAYDVVLLDWSL--PDLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R+   + P++ ++   S    +    +G DD + KP    E++AR+ A++RR  
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELIARIEALHRR-G 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + + +  GP+ + +  R   V  +   L  RE  ++  L  + G+ +++T++   ++G 
Sbjct: 120 GATDVSALGPVTLDARRRALIVGAQSETLTAREYGLVAELARHAGEVLSRTRLIETVWGQ 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +     NVV+ ++  LR KL         ++S R +GY +
Sbjct: 180 -EFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRL 219


>gi|126699068|ref|YP_001087965.1| two-component response regulator [Clostridium difficile 630]
 gi|115250505|emb|CAJ68329.1| Two-component response regulator [Clostridium difficile]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 4   LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTL--PDGTGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 62  ELCQYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 121

Query: 122 SNNRAETGPIRVFSDGR----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +                     +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 122 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 182 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 224


>gi|113955138|ref|YP_730441.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113882489|gb|ABI47447.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  ++DD   ++        D G  +   + ++  E      R D+  ++      G+  
Sbjct: 20  MIWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQLEARLEFQRPDLIVLDLM--MPGDDG 77

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILAR 111
           L   R +R A   +P++ ++        +   + G DD + KP   RE        +  R
Sbjct: 78  LTALRRLRDAGDDLPVVMLTARGDGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRR 137

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               G  +     R     G    +   E  +L   + +  + +++ 
Sbjct: 138 SSIPAGTPLAEGGDVTFGENQFDLSARTLFRNGSPVVITSGEFSLLAAFVQHPHRPLSRE 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++     G      +   ++  +S++RK +         + +    GY  
Sbjct: 198 RLIELARG-PGSDTDSRSMDVQVSRVRKLVEPDPARPRYIQTVWGYGYVF 246


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 12  LLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPGMDGF 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 189 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229


>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
 gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
 gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
 gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
 gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
 gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
 gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
 gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
 gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
 gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
 gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
 gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
 gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVML--PGFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA   +VP + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  LLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    G+   L   +  +L YLM N  + ++K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLRYLMENPKRVISKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 -NYDFGGQANIVELYISYLRKKI-DAVHPPMIHTVRGAGYVI 242


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D   A        +   N       +    + D   ++      G     
Sbjct: 21  LVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVM--MPGMDGFT 78

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ ++   ++   +     G DD V KP    E++ R+  I RR++ 
Sbjct: 79  VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQP 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E+          D   +     +V  L   E ++L YL+ N    V+K +I  A+
Sbjct: 139 EEKEDESLITYADLTLSDDMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 199 W-EYDFGGDGNVVESYVSYLRRKI-DTQEPHLIHTVRGVGYVL 239


>gi|297155496|gb|ADI05208.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 235

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                R DV  ++      G   L+
Sbjct: 8   LLAEDDRAIRHALERALTLEGYRVTAVPDGIEAVAAAHRERPDVIVLDVM--MPGLDGLQ 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        ++  D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 66  VCRVLRAEGDRTPILILTARVETADRIEGLDAGADDYVAKPFDVDEVFARLRALLRRAAP 125

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +       +R+ S  R     G    L R E  +LE L+ N G  +    
Sbjct: 126 WAGEEETAPGDGMEGVADLRLDSSARRVWRAGAELELTRTEFDLLELLVRNSGIVLDHAT 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+  I+G +D       +  +I  LR+K+        + + R +GY++
Sbjct: 186 IYDRIWG-YDFGPGSKNLAVYIGYLRRKVDQPGLVPLIHTVRGVGYTL 232


>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+   G +     +   + +  D+  ++  L   GE  L
Sbjct: 8   ILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMKKALTESSFDLVVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P+I ++        +   + G DD V KP   RE++AR+ +I RR + 
Sbjct: 66  TLCRSLRGESDIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRARH 125

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                     +    +G V PL   E R+L   +    + + + 
Sbjct: 126 EREPESPESSDIAVEFEGWRLHRVLRQLTSPEGMVVPLSNAEFRLLSVFIERPNRILTRD 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           Q+     G   E V +  ++  +S+LR+KL++       + + R  GY  
Sbjct: 186 QLLDYARGRAME-VFDRSIDLLVSRLRQKLQDDPKNPKLIKTIRGEGYFF 234


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V      +  D+   ++   +      L SS   D+  ++  L       +
Sbjct: 3   ILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLL--PELDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           +  + +RA     P++ ++        +   ++G DD + KP    E+LARV A     +
Sbjct: 61  KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V     E   +R+  + R+   +     L  +E  +LE  + N  +  ++  I   ++
Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              D   EE  V SH+  LR+KLR      D +++   +GY +
Sbjct: 181 SYSDAPGEE-TVTSHMKGLRRKLRTVGAPADLIETVYGVGYRL 222



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/85 (8%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            + +DD + +          +   +   +              D+  ++  +    G ++
Sbjct: 541 ILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIEL 600

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQ 85
            +  R   A   +P++  + +    
Sbjct: 601 CQTVRRSPAWRHLPIVFFTAHAEPH 625


>gi|192293211|ref|YP_001993816.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|192286960|gb|ACF03341.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S+       +    D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGLDFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNILKRTAP 138

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          GP     +  +     E+  L  RER +L  L A  G+ V +  +    
Sbjct: 139 APAAKAETVAFGPYVFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRGDL---- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                    E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 195 --SGAGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRL 236


>gi|153940586|ref|YP_001390235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936482|gb|ABS41980.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318329|gb|ADF98706.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++  G       +G +      +   +      + D+   +  L        
Sbjct: 3   ILLVEDDKIIASGIEYSLEQEGFTTILCYDVATAKKALKYNKFDLCIFDLSL--PDGNGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +I+R    +P+I ++        +   D G DD + KP   RE+++R+ ++ RR + 
Sbjct: 61  ELCKIVREKEDIPIIFLTACDDEVNVVMGLDMGADDYIIKPFRIRELISRIKSVLRRYQK 120

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         IR+ +         +   L   E R+L  L  N+G+ +++ Q+   I+
Sbjct: 121 GINSKIILELNDIRINTLDAKVYKNDKEIVLTALEYRLLLILANNQGQVLSRNQLLQGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +  + V +N +  +I ++R+KL  +      + + R +GY 
Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLENDPQKPVIIKTVRGMGYK 222


>gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 247

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +E                     ++  L   G   L
Sbjct: 7   ILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLML--PGVDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA +   P+I  S   S    +   + G DD + KP    E++ARV A+ RR +
Sbjct: 65  EICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSE 124

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A+            +    R+  V G+   L  RE  +L +     GK  ++  +
Sbjct: 125 ALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  N      + +    GY +
Sbjct: 185 LNQVWG-YRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKL 231


>gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++       + G ++    +      L      D+  ++  L       LE
Sbjct: 6   LLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDCDIVVLDIML--PDISGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA + +P++ ++        +  F+ G DD + KP + RE++AR+ A+ RR+   
Sbjct: 64  VLRELRAETHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRIAWD 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                           +P  +          L   E  +L+ L+A+ G  V KT +    
Sbjct: 124 QKTEVNAARTYGDLRVEPGHRRIYQNDVAMELTATEYEVLQVLLAHAGSVVRKTDLMQWA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            G   EA +   ++ HIS LRKKL N      +++ R LGY
Sbjct: 184 LGRRLEAYD-RTLDMHISNLRKKLGND-DPPRIETVRGLGY 222


>gi|306837815|ref|ZP_07470678.1| Protein petR [Brucella sp. NF 2653]
 gi|306407111|gb|EFM63327.1| Protein petR [Brucella sp. NF 2653]
          Length = 235

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 16  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGV 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 74  SLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 133

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       GK + + ++    
Sbjct: 134 PAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGKTIPRHELT--- 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 191 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 232


>gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
 gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
          Length = 263

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 31  LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 88

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 89  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 148

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 149 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 208

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 209 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 255


>gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 234

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D A   D   ++   +G ++    + +           D+  ++  L    G  +
Sbjct: 6   ILLIEDEASNADIISSVLRKEGFAVTWAETGQKGLAAAGMTPYDLIVLDRMLPDISGMDI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118
           +   R   A  + P++ +S     +   +  + G DD        H      R      R
Sbjct: 66  ITRLRS--AGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRRSR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V +     G I +    R    QG    L  +E  IL+ LM + G  V +  +   ++
Sbjct: 124 NQVHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L +   + NV++ ++S+LR +L +      +++ R  G+ +
Sbjct: 184 HL-NFDPQTNVIDVNMSRLRHRLEDDFATPCLETVRGAGFRL 224


>gi|300779924|ref|ZP_07089780.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534034|gb|EFK55093.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 233

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G         +       +   D+      L+  G    
Sbjct: 5   ILIVEDEESLADPLAYLLRKEGFEAVVAPDGQAALTQFEANNVDLV--LLDLMLPGMSGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           ++ + +RA S VP+I ++   +    +   + G DD V KP   R             + 
Sbjct: 63  DVCKKLRATSDVPIIMVTARDTEIDKVVGLELGADDYVTKPYSTRELIARIRAVLRRRSD 122

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           VA      + S N  E G +R+  +     V  +  P+P +E  +LEYLM N G+ + + 
Sbjct: 123 VADPPGEEESSENILEGGRVRLDVERHTVYVDDQPVPMPLKEFDLLEYLMRNAGRVLTRG 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+       + + + R LGY  +
Sbjct: 183 QLIDRIWG-SDYVGDTKTLDVHVKRLRTKIEQEPSRPEQLITVRGLGYKFE 232


>gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator
           [Rhodoferax ferrireducens T118]
 gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D      G+ G  ++             +   D++ ++  L   G    
Sbjct: 3   ILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVML--PGMDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +   IR A   +P++ +S    +   +   + G DD + KP    E+LARV        
Sbjct: 61  AVLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        + +    R     G+   L  +E  +LE L+  + + + ++ I S ++
Sbjct: 121 KGSSTEFLRAADLELDLLRRRVTRAGKRIDLTSKEFALLELLLRRQDEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRAKVDDNFEPKLIRTVRGMGYVLE 222


>gi|54301942|ref|YP_131935.1| DNA-binding response regulator [Photobacterium profundum SS9]
 gi|46915362|emb|CAG22135.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum SS9]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++       + G  ++          + +S    +  ++  L       +
Sbjct: 3   ILVIEDDLTTREFIAKGLREHGFVVDEAGDGHQGLMMATSCEYQLIILDRMLPI--LDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
           ++   IRA  +Q P++ +S   S++  +    +G DD + KP            +   + 
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRHH 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        +R+            +  L ++E  +L+YLM +    V++  +F ++
Sbjct: 121 SSTKVVTEYIYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLMEHAENVVSRMSLFESV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 181 WS-YHFDPKTNVIDVHIANLRKKLEENGELGLIHTIRGAGYVL 222


>gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D G S     +++      +    ++  ++  L       L
Sbjct: 8   ILLVEDEPGIAELLQFTLADAGFSSHNAMTVQEARLAIAEQLPEIVLLDWML--PDGSGL 65

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
            L R  R   A + +P+I ++     +  +   ++G DD + KP   RE++AR+ +    
Sbjct: 66  TLLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRR 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   S      G I + ++     V      L + E R+L++L+A+  +  +++Q+   
Sbjct: 126 NRADASRPGNIYGTIVIDTERHLVTVADVPVKLDQSEFRLLKFLVAHPARVFSRSQLLDK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  +  +EE  V+ HI +LRK L    G   + + R +GY +D
Sbjct: 186 VWG-DEAFLEERTVDVHIMRLRKSLGVAAG--YIKTVRSIGYLMD 227


>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A+S +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        +  E G   +    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESVVEFGEFSLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + D   +    DG  +      +           D+  ++  L        E
Sbjct: 8   LVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLML--PDMTGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           + + IR  S+VP+I ++     ++ +     G DD V KP   RE++AR+       +  
Sbjct: 66  ICKAIRKKSRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRRVSEE 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + V    R+   +GE   L   E ++L  L+    K   + ++ +A
Sbjct: 126 AVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELINA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + G  D    + V+++H+  LR+KL  N    + + +    GY +
Sbjct: 186 VLGE-DYDGYDRVIDTHVKNLRQKLETNPKEPEYIITVHGTGYRL 229


>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  + +++ +   +        +  ++      G    +
Sbjct: 6   LIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIM--MPGMDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  +++P++ ++      + +    SG DD + KP    E +ARV ++ RR    
Sbjct: 64  VLEKIRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTNF 123

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N+  E           +  + R    +     LP +E  IL Y   N+GK + K QIF  
Sbjct: 124 NSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++       ++N + + ISKLRKK+ +       + + + +GY  
Sbjct: 184 VWQEP-YVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRF 227


>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
 gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++IDD   + +         G                   + D+  ++  L    G +VL
Sbjct: 9   LIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISGIEVL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R      ++P+I ++        ++  + G DD + KP   +E+LAR+ ++ RR  +
Sbjct: 69  KKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRRYGM 128

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +         +++     + ++  +   L  +E  +L+ L+ NRGK +++  +   I
Sbjct: 129 NTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNFLLDEI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +G ++   E   V+ HI  LRKKL         +++ R +GY ID
Sbjct: 189 WG-YEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKID 232


>gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G   E            +     D++ ++  L   G   
Sbjct: 8   ILVVEDEPDIADVVLDYLRHSGFEAEHLAEGPAALARLTGPTPPDLTLLDIML--PGVDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           LE+ R  R H+  P+I ++        L   + G DD + KP   RE++ARV  +  R  
Sbjct: 66  LEVLRQARRHTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  A+  P+ +        ++G    L  RE R+L+ L ++ G+  ++ Q+    Y 
Sbjct: 126 AHPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
                V E  ++SHI  LR+KLR   G D   + S   +G+S++
Sbjct: 186 DT-LDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLE 228


>gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++  Y ++    G S+    + E       +   ++   +  +    G  +
Sbjct: 21  ILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYDL 80

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 81  VGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 138

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   T        D          F LP++E  +L  L++   K   + Q+   I+G
Sbjct: 139 INYSSILTIGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 199 L-DTNTEERTIDVHIKRLRTRFEKTEDFQII-TVRGLGYK 236


>gi|302380601|ref|ZP_07269066.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233633|ref|ZP_07320287.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311544|gb|EFK93560.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495067|gb|EFL54819.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +E     +    + +S    +  ++  L        
Sbjct: 11  ILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLML--PKISGE 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++  +IR+ ++ P+I ++        L+    G DD + KP   + ++ +V  I RR   
Sbjct: 69  KVMEVIRSRTETPVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVEK 128

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K      + G + +  D       GE   L   E +I++ L +N  K   + +I  
Sbjct: 129 LGLPKSDKIYFDNGRVSISFDDNTFIKDGENISLTSNEFQIIKTLFSNPNKIFTRDEIIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  +++HI  +R K+ +       + +   +GY +
Sbjct: 189 LSFG-YDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233


>gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 220

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      ++   D++ ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +    D+   ++   + +           D   ++  L        
Sbjct: 3   ILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIML--PELNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ +   P++ ++   S++  +   DSG +D + KP    E+LAR+  + R+  
Sbjct: 61  EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+    T     V ++            L +RE  ILEY++ NRGK ++K +I   I+ 
Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRDDIPIKLSKREFTILEYMIRNRGKILSKDKIEQHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV+E +I  LRKK+        + +   +GY +
Sbjct: 181 -YDYEGGSNVIEVYIRYLRKKIDADFSPKLIHNIYGVGYIL 220


>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKEIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +G  +           +      D+  ++  L        E
Sbjct: 8   LIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLML--PDMTGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           +  I+R  S+VP+I ++     ++ +     G DD + KP   RE++AR+ AI+RR    
Sbjct: 66  ICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNEE 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + +    ++    GE   L  R+ +IL  L+    K   + ++ S 
Sbjct: 126 VVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIST 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI--DWN 223
             G  D    +  V++H+  +R+K+  N      + +    GY    ++N
Sbjct: 186 ALG-DDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFN 234


>gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 221

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G +++     E   +L S+   D + ++  L       L
Sbjct: 3   ILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGL--PEIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  R     P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGY +D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADIITTIRGLGYQLD 217


>gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D  L+ DG  A     G +++        E   S    D   ++  L    G    
Sbjct: 4   LLVEDDPLLGDGIRAGLMQAGFAVDWAKDGREAELAVSGEPYDAVVLDLGLPRLPGMD-- 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            L R   + + VP++ ++   S+   +   D+G DD + KP    E+ AR+ A + R   
Sbjct: 62  MLRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVRRAKS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   GR   + G    L  RE  IL  L+ N G+ ++K Q+   +YG 
Sbjct: 122 QIEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEKLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N VE  +  LR+KL      D + + R +GY I
Sbjct: 181 WGEEIESNAVEVFVHHLRRKL----APDLIRTVRGVGYMI 216


>gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G S++   +      L  +   D   ++  L   G   L
Sbjct: 3   LLLVEDDVQAATYLAKGLEESGHSVDRAANGTDGLHLAMTGEYDALIVDRML--PGLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L    RA  +  P++ +S    +   +    +G DD + KP    E+           +
Sbjct: 61  GLIAAYRAAGRATPVLILSARGEVDDRVTGLKAGGDDYLTKPYAFSELLARIEALTRRMQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S++      + +         + +   L  RE R+L+YLM + G+ V +T +   ++
Sbjct: 121 TRDSSDTLAVADLVLDRVRHKVMRRDQPILLQPREFRLLDYLMRHAGQVVTRTMLLEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 G-YHFDPQTNVIDVHISRLRSKIDRDFDTPLLHTVRGAGYVL 221


>gi|212637427|ref|YP_002313952.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212558911|gb|ACJ31365.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 245

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +        ++    +L+    + ++ + D+  ++  L       +
Sbjct: 16  ILLIEDEQDLAKLVMLNLKSMNHAVIHCVTLQQASQVIATKQIDLILMDRML--PDGDGI 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            L + IR      P + ++   S    +   +SG DD + KP    E+ ARV        
Sbjct: 74  TLCQQIRQDGNELPCMLLTAKDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRGT 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +   E   I +  + R+     E   L  RE  +L YL  +  +  ++ Q+  A+
Sbjct: 134 QIAHQDESLEFNGISINCNTREVIAFNETLELTAREFDLLLYLAQHPKQVFSRMQLLEAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G +  +  E+ V SHI++LR KL RN    D V +   +GY  
Sbjct: 194 WG-YSYSGYEHTVNSHINRLRNKLARNACTTDLVKTVWGVGYKF 236


>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLCHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
 gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +           +       ++ ++          + 
Sbjct: 11  LVVEDDKEIREGVEIYLKSQGYEVFQAADGVEGLEVIEKEDIHLAIVDIM--MPRMDGIS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112
           +   +R     P+I +S        +   + G DD V KP                  R 
Sbjct: 69  MVVKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRRF 128

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + ++     G + +  D  +  V GE   +   E +IL  LM N G+  +  +
Sbjct: 129 MERLGDKEENSRIHTIGGLEINEDNVEVTVDGEPVKMTPIEYKILLLLMKNPGRVFSAEE 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + A+  + +  H+  +R+K+  N      +     +GY I+ 
Sbjct: 189 IYERVWN--ERAINTDTIMVHVRNIREKIEVNPREPKYLKVVWGVGYKIEK 237


>gi|123442021|ref|YP_001006004.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332162074|ref|YP_004298651.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122088982|emb|CAL11793.1| response regulator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606122|emb|CBY27620.1| transcriptional regulatory protein PhoP [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666304|gb|ADZ42948.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860072|emb|CBX70398.1| transcriptional regulatory protein phoP [Yersinia enterocolitica
           W22703]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223


>gi|120611195|ref|YP_970873.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589659|gb|ABM33099.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 262

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + +   A     G+        +    +  + + D+  ++           +
Sbjct: 35  LIAEDEPEIAEILAAYLARGGLQTVHAPDGQAALAMHQALKPDLVLLDV--QMPRVDGWK 92

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           +   IR     P+I ++        L     G DD V KP +  E++ARV A+ RR    
Sbjct: 93  VLSEIRHRGDTPVIMLTAMDQDIDKLMGLRIGADDYVVKPFNAAEVVARVQAVLRRSRGA 152

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V                   + +  +  L   E ++L  LM +  +  ++ +
Sbjct: 153 RGGANAQAVLRAGIFQIDPETHEASVHLDGRRHLLDLTLTEFKLLACLMRSPRRVFSRLE 212

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  A   L +    E  V+SHISKLRKKL          S R +GY +
Sbjct: 213 LLEAC--LPEGDTLERTVDSHISKLRKKLEPLGVEGLPVSVRGVGYRL 258


>gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146]
 gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G  G ++    +      L  + + D+  ++  L   G    
Sbjct: 8   ILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGL--PGMSGH 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  R     +P++ +S        +   + G DD V KP    E++AR+        
Sbjct: 66  ELLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +      +TG + V    R  +V+G+   L  +E  IL  L+ + GK +    +   +
Sbjct: 126 QQQGEKPIFQTGDLSVDLVKRIVKVEGKEVKLSPKEYDILRMLVQHAGKVLTHHFLLKQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G   ++ +   +  ++ +LR+K+         + ++  +GY +
Sbjct: 186 WG---DSTDVQYLRVYVRQLRQKIEKSPDQPRYITTETGVGYRL 226


>gi|297156667|gb|ADI06379.1| putative two-component system response regulator for high-affinity
           potassium transport system [Streptomyces bingchenggensis
           BCW-1]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++  +       L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDAASDGATALRLAATRHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIKGLRGWTRVPILVLSARQTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    ET    V    +     G    L   E  +LE L+ N G+ V++ Q+   +
Sbjct: 123 GAADGGAVVETEGFTVDLAAKKVNRGGVDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 WGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 226


>gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 20/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       + G  +    + +    L  +    ++ ++          + 
Sbjct: 6   LVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIM--MPIMDGIT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   +R +   P+I +S        ++  + G DD V KP    E+LARV +  RR +  
Sbjct: 64  MTMELRKNYDFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRRYEQI 123

Query: 122 --------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                         + +R   G + + +  +D  V G    L  +E  IL+ LM + G+ 
Sbjct: 124 LSLQTASKQDKTEKNPHRFCVGGLELDTYTKDVYVDGRRVKLTPKEFAILQLLMESAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  QI+  ++   +EA+    +  H+ KLR+K+  N      +     +GY I+ 
Sbjct: 184 YSAKQIYEQVW--EEEAINTETIMVHVRKLREKIEVNPRQPQYLKVVWGVGYKIEK 237


>gi|302873321|ref|YP_003841954.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688511|ref|ZP_07630957.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576178|gb|ADL50190.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V      +  D G  ++   +         ++  D+  ++  L  K     
Sbjct: 4   ILLIEDNKDVNRMISEVLFDAGYQVKSAYTGIEGINEIKNSNYDLILLDIMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + +R  S  P+I IS    + T +D    G DD + KP    E    +        +
Sbjct: 62  EILKEMRNFSDTPVIVISAKDMVGTKIDILKLGADDYITKPFDLGEVLARIEATLRRCHK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N   +   I +  + +   V G    L  +E  ILE L+  +GK   K  ++ +I+
Sbjct: 122 QVHINKVIKYKDIVLDDNSKHVSVNGVEIELTAKEYMILEMLIKYQGKVFTKANLYESIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              +   ++N V++H+S LR KL+        +++   LGY +
Sbjct: 182 -KEEYLGDDNAVKTHVSNLRSKLQKANEHEKYIETVWGLGYRL 223


>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGY 218
           +   E+  V+SHI  LR KLR         + +   +GY
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGY 218


>gi|39937428|ref|NP_949704.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651287|emb|CAE29809.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S+       +    D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGLDFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNILKRTAP 138

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          GP     +  +     E+  L  RER +L  L A  G+ V +  +    
Sbjct: 139 APAAKAETVAFGPYVFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRGDL---- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                    E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 195 --SGAGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRL 236


>gi|262373379|ref|ZP_06066658.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313404|gb|EEY94489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              S + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 251

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +   +    D  +    ++      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAVAVARDFDPDVVILDLGL--PGMDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 79  VCRRLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRRPRAT 138

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             R              GP+R+    R+  + GE   L R E  +L  L A  G  +++ 
Sbjct: 139 PERESDGGGDVAAPLSFGPLRIDVAAREVSLDGEPILLTRTEFDLLAALSARPGVVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  +R+KL +       V + R +GY +
Sbjct: 199 QLLETVREGP-WVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGYRM 247


>gi|50083946|ref|YP_045456.1| two-component regulatory system response regulator [Acinetobacter
           sp. ADP1]
 gi|169634184|ref|YP_001707920.1| OmpR family response regulator [Acinetobacter baumannii SDF]
 gi|169797062|ref|YP_001714855.1| OmpR family response regulator [Acinetobacter baumannii AYE]
 gi|184157025|ref|YP_001845364.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213156532|ref|YP_002318193.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215484523|ref|YP_002326758.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB307-0294]
 gi|239501298|ref|ZP_04660608.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB900]
 gi|260551037|ref|ZP_05825242.1| two-component system response regulatory system response regulator
           [Acinetobacter sp. RUH2624]
 gi|260555646|ref|ZP_05827866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293609143|ref|ZP_06691446.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|301345629|ref|ZP_07226370.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB056]
 gi|301512784|ref|ZP_07238021.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB058]
 gi|301596295|ref|ZP_07241303.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB059]
 gi|332852151|ref|ZP_08433978.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013150]
 gi|332867550|ref|ZP_08437703.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013113]
 gi|332872600|ref|ZP_08440568.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6014059]
 gi|49529922|emb|CAG67634.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter sp. ADP1]
 gi|61224854|gb|AAX40744.1| BfmR [Acinetobacter baumannii]
 gi|169149989|emb|CAM87883.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii AYE]
 gi|169152976|emb|CAP02024.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii]
 gi|183208619|gb|ACC56017.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193076532|gb|ABO11188.2| two-component regulatory activator (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|213055692|gb|ACJ40594.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988835|gb|ACJ59134.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB307-0294]
 gi|260405985|gb|EEW99472.1| two-component system response regulatory system response regulator
           [Acinetobacter sp. RUH2624]
 gi|260410557|gb|EEX03855.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292829716|gb|EFF88078.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|322506924|gb|ADX02378.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii 1656-2]
 gi|323516791|gb|ADX91172.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325121077|gb|ADY80600.1| response regulator in two-component regulatory system with RstB
           [Acinetobacter calcoaceticus PHEA-2]
 gi|332729523|gb|EGJ60862.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013150]
 gi|332733967|gb|EGJ65112.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013113]
 gi|332739129|gb|EGJ69988.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6014059]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              S + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 230

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G      +        Q     D+  ++  L  K    L
Sbjct: 5   ILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   + G DD + KP   RE++AR+ AI +R   
Sbjct: 63  EVCRDIRKSSDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKRSTP 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +  T          ++       G    L   E R+L+ LM      + + Q+  A+
Sbjct: 123 SITQLPTALTHGALELDAERHQCAFAGVPVSLTGSEFRLLKVLMTRPDLVLTRAQLVEAL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG F+  V +  ++SHI  +R K+      + V +   +G  +
Sbjct: 183 YG-FNIHVSDRTIDSHIRNIRAKMSEVGCTEAVVTVHGVGLRM 224


>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
           9905]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R  ++ +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 237

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   +    +G  +      E       +   D+  ++  L        
Sbjct: 6   ILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAEDIDLVILDLML--PKMLGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S+VP+I +S        +     G DD + KP   RE++ R+ A+ RR++ 
Sbjct: 64  DVMKEIRNRSEVPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRRIEK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
            N         +             F       L + E  IL+ L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTLDGRLEMDLEYNRFFKDGVEIYLTKNEFSILKTLFSNPNKIYTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
             +G +D    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 184 ITFG-YDYDAYDRAIDTHIKNIRQKIEDNPKKPMYIKTIYGMGYK 227


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      + S  + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSSTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 238


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    +E  +  +           D+  ++  L       +
Sbjct: 3   ILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIML--PKLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA+    P++ ++   +++  +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  SLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRGE 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       G + V     +   Q +V  L  +E R+LE+ + +  +  +++Q+   ++ 
Sbjct: 121 TSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             D+  EE  V++HIS LR+KL+      D +++   LGY +
Sbjct: 180 AMDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221


>gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 218

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G  G   +          L      D+  ++  L   G    
Sbjct: 5   ILIVEDDEAISNLIRISLGMAGYQCKQTFDGMEAFNLIKQESFDLILMDIML--PGIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I++   VP+I ++    L   +    SG +D + KP    E+LAR+  + RR   
Sbjct: 63  ELMKRIKSL-NVPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRRYSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +NN  E   ++++ D R  +   E   L  +E  ++  L+ N+   +++  +   I+G +
Sbjct: 122 NNNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKIWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   E   +++HI K+RKKL        + +   +GY ++ 
Sbjct: 181 EYMGETRTIDTHIQKIRKKLDIAEN---IKTVYKIGYRLEE 218


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    S             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIML--PDFDGLE 77

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           + R +R HS   P++ ++   +++  +    +G DD V KP    E++AR    +     
Sbjct: 78  VMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++  E G +R+  D  +     +   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 W-NYDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
 gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+ +           +       +  ++          ++
Sbjct: 7   LVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIM--MPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIREKKDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +N            I +    +   V GE       E +ILE+LM + G+  +  QI+  
Sbjct: 125 SNYKINKEELKVGGIILNKIAKRVTVDGEEIRFTPIEYKILEFLMESIGQVFSIKQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|254513054|ref|ZP_05125120.1| DNA-binding response regulator PetR [Rhodobacteraceae bacterium
           KLH11]
 gi|221533053|gb|EEE36048.1| DNA-binding response regulator PetR [Rhodobacteraceae bacterium
           KLH11]
          Length = 233

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +           + S    D+  ++      GE  +
Sbjct: 8   LLIVDDDERIRDLLKKFLMRSGFLVSSARDAAHARRVLSGLDFDLIVLDVM--MPGEDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R   + P++ ++     +  +   ++G DD + KP   +E+L R+ AI RR+  
Sbjct: 66  SLTRALRETHETPILLLTAKGETEHRIAGLEAGADDYLAKPFEPKELLLRINAILRRMPE 125

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  +         GPIR   +  +     +   L   E ++++   A  G+ +++ ++  
Sbjct: 126 TPVQDAAAKILHLGPIRYDIERGEMWQGEDPVRLTATESQLMKIFSAQPGEPISRAKLVE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G      +E  V+  I++LR+KL  +      + + R  GY +
Sbjct: 186 DL-GRDKGQAQERAVDVQITRLRRKLEQDPKQPRYLQTVRGAGYML 230


>gi|207738979|ref|YP_002257372.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|300697058|ref|YP_003747719.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
 gi|206592350|emb|CAQ59256.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|299073782|emb|CBJ53303.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR  +
Sbjct: 61  QVIRELRRRKATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGPM 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         + +  R     G+   L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 652

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ D  ++        ++                 D+  ++  L    +  +
Sbjct: 3   ILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGL--PQQDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA  SQVP++ I+   +    +   D+G DD + KP+   E+ ARV A+ RR  
Sbjct: 61  TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +          ++               L  +E  +LE  + + G+  ++ Q+   ++ 
Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  +EE  V++H+  LR+KL+     D +++   +GY ++
Sbjct: 181 FDDPPLEE-SVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L+DD  +  +  + L    G+ L G N+      +  S R D+  ++  +    G ++ 
Sbjct: 383 LLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIELC 442

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           +  R       +P+I ++ +   +T    F  G DD V KP
Sbjct: 443 QSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKP 483


>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 85/224 (37%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G  +      E      +    D+  ++  L         
Sbjct: 4   LIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYENFDIIILDLML--PKMSGFY 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           +   +R      P++ +S   S++  +     G DD + KP    E+    +      + 
Sbjct: 62  IIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSKD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++ +   + +    ++     +   L  +E  +L+YLM N  K V +  I + ++ 
Sbjct: 122 IDEISKLKYHDLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D  +E NVV+  I +LR K+        + + R  GY +  N
Sbjct: 182 I-DFDIESNVVDVQIHRLRDKIDKGFDKRLIHTVRGFGYVLKAN 224


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD A + D     F  +G  +    +      L ++   D+  ++           
Sbjct: 4   LLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR   
Sbjct: 62  ETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 T  I +       + +          L   E  +LE ++   G+ + K ++   
Sbjct: 122 EREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             G      +   ++ HIS LRKK+ N + G   + + R +GY    N
Sbjct: 182 ALGRKLTMYD-RSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228


>gi|89889387|ref|ZP_01200898.1| two component system response regulator [Flavobacteria bacterium
           BBFL7]
 gi|89517660|gb|EAS20316.1| two component system response regulator [Flavobacteria bacterium
           BBFL7]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +           G  +   ++             D++ ++           
Sbjct: 8   ILLAEDEPALGLIVKESLETRGYEVNHCHNGIEAYQSFEQQTPDIAVLDVM--MPELDGF 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117
            L + IR  + Q+P+I ++     +  L+ F  G +D + KP    E++ R+       +
Sbjct: 66  SLAKKIRTVNEQMPIIFLTAKSQTEDVLEGFHVGGNDYLKKPFSMEELIVRIKNLLSRQQ 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +         F   +          L  RE  +L +L+  + + + +T I   +
Sbjct: 126 TQQTAASYELGKYNFNFPQQKLSFSTENPVKLTHREAHLLYHLIQKKNQVLDRTFILKKL 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D       ++  ISKLRKKL      + + + R  GY +
Sbjct: 186 WGNDDFF-SGRSMDVFISKLRKKLSRDSQIEII-NVRGYGYKL 226


>gi|329930448|ref|ZP_08283988.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328934826|gb|EGG31316.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +        +G  +    +          A+  +  ++  L       +
Sbjct: 5   LLLVDDERKVIEFMEPFLRQEGFHIITAATGTEALAKARDAKPALVVLDWML--PELSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+V +I ++        L   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  EVCRELRKSSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEG 122

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   E       +                L   E ++L  L +  G   ++ Q+  A  
Sbjct: 123 ESVTEEMLKRGDLTISETQCRVWKHDREILLTPTEFKLLLTLASRPGVVYSRLQLLQAA- 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              D   +E   ++HIS++RKK+  +      + +    GY  +
Sbjct: 182 MEDDIHNDERTADAHISRIRKKIEEDPAEPVFIKTVYGFGYRFE 225


>gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
 gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
          Length = 234

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D AL            G  +                  DV  ++  L   G   L+
Sbjct: 5   LIIEDDALNARYIAEGLRQQGAHVSVCGDGVQGIAQAVGENWDVIILDRMLP-NGFDGLQ 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           + + +R+   Q P++ +S   +    +    +G DD + KP    E+ AR+       ++
Sbjct: 64  ILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQI 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   +RV    R  E  G+   L  RE R+L +LM +  + V +T +  +++ 
Sbjct: 124 PAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR K+        + + R +GYS+
Sbjct: 184 -YRFDPQTNVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 223


>gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
 gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L +D   +    +    +DG S++          + S    D   ++           
Sbjct: 3   IFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIM--MPKADGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119
            + R +R      P++ ++   ++   +   DSG +D + KP    E+ AR+   +    
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++N      + +          G+   L  +E  +LEY M N+G+ +++  I   ++ 
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     NVV+ +IS LRKK+        + + R  G+ +
Sbjct: 180 NFDYEGGTNVVDVYISYLRKKIDGGYDKKLIHTVRGRGFIM 220


>gi|320335876|ref|YP_004172587.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319757165|gb|ADV68922.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 221

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G  ++  ++             D+  ++  L        
Sbjct: 6   ILVIEDDHDIANVLRMDLADAGFEVKHADAAMTGLIKAREDNPDLILLDLGL--PDFDGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD V KP H  E+        +  + 
Sbjct: 64  DVVQRLRKNSTVPVIVLTARDTVDEKVRLLSLGADDYVIKPFHPDEL--LARIKVQLRQR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +++    R    QGE   L  +E  IL  LM   G+  ++ +I   I+   
Sbjct: 122 GSETLTLGDLQLDPQKRLVLFQGEELRLSPKEFDILALLMRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLEGYGLLRTVRGVGYAL 219


>gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A           + G  ++         +L +    DV  ++  L   G   L
Sbjct: 3   ILLIEDDAETAAYVAKGLKEQGYVVDHAAEGREGLFLAAEGPYDVMIVDRML--PGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR A ++ P++ ++   S++  ++  ++G DD + KP    E+LARV A+ RR  
Sbjct: 61  AIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGGDDYLVKPFAFSELLARVQALARRPP 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     G    L   E ++LEYL+ N G+ V +T +   ++
Sbjct: 121 LADVTTQLRIADLELDLLTRTASRAGHSLDLKPLEFKLLEYLVRNAGRIVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + NVVE++IS+LR K+    G D + + R  GY +
Sbjct: 181 D-FHFDPQTNVVETNISRLRAKVDRGFGCDLIHTVRGAGYML 221


>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  + E      S    D+  ++  +   G   L+
Sbjct: 6   LIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|256825944|ref|YP_003149904.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689337|gb|ACV07139.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G   E          L      D+  ++  L   G    
Sbjct: 4   ILIIEDNDRIASFIDKGLRAAGYQTEVVGDGRTGLTLAMHGGFDLVVLDLGL--PGMDGT 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R     VP++ ++   +++ T+   + G +D + KP    E+LARV        
Sbjct: 62  DLLENLRGQGVSVPVVVLTARDTVEDTVSALEGGANDYMTKPFQFAELLARVRVRLADTT 121

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +   +           R+    G    L  RE  +L   M + G+ +++ Q+ +
Sbjct: 122 EVPTAKDGMVVEAGGLALDHRTREVRGDGVQTSLTSREFGLLATFMRHPGQVLSRQQLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G+ D     NVV+  + +LR K+    G D +++ R +GY  
Sbjct: 182 EVWGV-DHDPHSNVVDVCVRQLRTKV----GSDHIETVRGVGYRF 221


>gi|169824516|ref|YP_001692127.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831321|dbj|BAG08237.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +E     +    + +S    +  ++  L        
Sbjct: 11  ILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLML--PKISGE 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  +IR+ ++ P+I ++        L+    G DD + KP   + ++ +V  I RR++ 
Sbjct: 69  KVMEVIRSRTETPVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVEK 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
                                            L   E +I++ L +N  K   + +I  
Sbjct: 129 LGLPKSDKIYFDNGRVSISFDDNTFIKDGESISLTSNEFQIIKTLFSNPNKIFTRDEIIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G +D    +  +++HI  +R K+ +       + +   +GY +
Sbjct: 189 LSFG-YDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233


>gi|83942132|ref|ZP_00954594.1| DNA-binding response regulator PetR [Sulfitobacter sp. EE-36]
 gi|83953187|ref|ZP_00961909.1| DNA-binding response regulator PetR [Sulfitobacter sp. NAS-14.1]
 gi|83842155|gb|EAP81323.1| DNA-binding response regulator PetR [Sulfitobacter sp. NAS-14.1]
 gi|83847952|gb|EAP85827.1| DNA-binding response regulator PetR [Sulfitobacter sp. EE-36]
          Length = 233

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +           + +    D+  ++      GE  L
Sbjct: 8   LLIVDDDERIRTLLQKFLMRHGFLVTSARDAAHARRILAGLDFDLIVLDVM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
            L R +R   Q P++ ++        ++  ++G DD + KP            + R    
Sbjct: 66  SLTRSLREDMQTPILLLTAKGETGNRIEGLEAGADDYLAKPFEPKELLLRINAILRRMPD 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R    +      GPIR   +  +     ++  L   E +++    A  G  ++++++  
Sbjct: 126 TRVADTAPKVLSMGPIRYDIERGELWQGDDLVRLTATEIQLMRIFAAQPGAALSRSKLVE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            + G      +E  V+  I++LR+K+ +       + + R  GY +
Sbjct: 186 EL-GRDRGQAQERAVDVQITRLRRKIEDNPKQPRYLQTVRGAGYML 230


>gi|121601666|ref|YP_989580.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
           KC583]
 gi|12830428|emb|CAC29081.1| putative regulatory protein [Bartonella bacilliformis]
 gi|120613843|gb|ABM44444.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
           KC583]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E + +        +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTNGVSALKSLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRFNA 128

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             + G + +  +      +     L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPVPTGVSPTSSFKRGDLIMDQERHTCTWKDRPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAY-NDQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|330811056|ref|YP_004355518.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379164|gb|AEA70514.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I       +   G            +   DV  ++  L   GE  L+
Sbjct: 26  LIVDDDVPIRELLIDYLARFSIRASGVTDGAAMRQAMQAEHFDVIVLDLML--PGEDGLQ 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 84  LCRWLRAESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDD 143

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +                  +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 144 RSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 204 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKAPQLIKTVRGEGYLFD 247


>gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 247

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 21/238 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++ G        G  +           +       ++ ++          +
Sbjct: 12  ILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVLEKEEILLAIVDIM--MPRMDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR + 
Sbjct: 70  TMVIKLREQYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 129

Query: 122 SN----------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                             N    G + +  D  +  V G    +   E +IL  LM N G
Sbjct: 130 FMKLLEEKEAGGQEKQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 189

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              +  +I+  ++   + AV  + V  H+  +R+K+  N      +     +GY I+ 
Sbjct: 190 HVFSAEEIYERVWN--ERAVNTDTVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIEK 245


>gi|288961137|ref|YP_003451476.1| two-component system, OmpR family, KDP operon response regulator
           [Azospirillum sp. B510]
 gi|288913445|dbj|BAI74932.1| two-component system, OmpR family, KDP operon response regulator
           [Azospirillum sp. B510]
          Length = 233

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    +        +  R D+  ++  L        
Sbjct: 9   ILVVDDEPQIRKFLRISLSANGYEVVEAENGRDGIGACAERRPDLVILDLGL--PDLDGQ 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I   + VP+I +S        ++  D G  D V KP    E++ARV A+ R+   
Sbjct: 67  EVISAIHRTAPVPIIVLSVRAQEYDKVEALDRGAVDYVVKPFGVGELMARVRAVLRQRPA 126

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +       +    R  E  G    L R+E  +L  L  +    +    +   ++
Sbjct: 127 DAEPPTSVTAGTLVIDLARRIVERGGAEVHLSRKEYELLAMLARHADHVLTHADLLREVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      +   +  ++ +LR+KL +       + ++  +GY  
Sbjct: 187 GPAHVH-DTAYLRVYVKQLRQKLEDDPNLPVLIVTEPGVGYRF 228


>gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D   +           G ++      +         + DV  ++  L    +  LE
Sbjct: 12  LFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLML--PRKSGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   VP+I ++        +   ++G DD + KP   RE+LAR+ A+ RR + S
Sbjct: 70  VCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRGRGS 129

Query: 123 NNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                                    G    L   E  +L  L    G+ + + Q+     
Sbjct: 130 LGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLLDLTK 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  DEA +   +++HIS+LR KL +       + + R  GY +
Sbjct: 190 GSADEAFD-RSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVL 231


>gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G  ++     E   +L  +   D   ++  L       L
Sbjct: 18  ILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGL--PSLDGL 75

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +    R   + +P++ ++        +   D+G DD V KP H  E+LARV A + R  
Sbjct: 76  SVLENWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 135

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G +R+        V G    L   E R+L YL+ ++GK +++T++   +Y 
Sbjct: 136 GHASNELTCGAVRLDLRSGRVTVDGSAVKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKK+    G D +++ R LGY +
Sbjct: 196 Q-DFDRDSNTVEVFVGRLRKKI----GSDMIETIRGLGYRL 231


>gi|114798039|ref|YP_760125.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC
           15444]
 gi|114738213|gb|ABI76338.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC
           15444]
          Length = 258

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L+DD   +       F  +G  +  ++  E      + +  D++ ++          +EL
Sbjct: 34  LVDDDENIVASLKMFFEAEGYQVRAYHDGESALPALTDSPPDIAILDI--KMPKMDGMEL 91

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S++P+I ++        +  F+ G DD V KP  +R +  RV A+ RR + ++
Sbjct: 92  LRRLRQTSELPVIFLTSKDEEIDEVIGFNIGADDFVRKPCSNRLLAERVKAVLRRSRGAS 151

Query: 124 NRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              E G ++           +       G+   L   E  IL+ L    G   ++ Q+  
Sbjct: 152 AVPEEGDVKAIVRGKLVLDPNRHACTWDGKQVRLTVTEFLILQALATRPGYVKSRDQLMD 211

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           A Y      V++  ++SHI +LRKK R     FD +++   +GY 
Sbjct: 212 AAYD-DQIYVDDRTIDSHIKRLRKKFREVTDEFDAIETLYGVGYR 255


>gi|294815609|ref|ZP_06774252.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328208|gb|EFG09851.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 247

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 23  LVVDDEPQIVRALVINLKARKYEVDAAPDGATALQLAAARHPDVVVLDLGL--PDMDGVE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 81  VIKGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 140

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     ET    V    +     G    L   E  +LE L+ N G+ V++ Q+   
Sbjct: 141 GGGDDDVVIVETESFTVDLAAKKVNRDGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 200

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 201 VWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFITEPGMGYRFE 245


>gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 123 QMSQAEPVSQDKVIIGPILVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFG-DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++     F   DG +     S E      +  R D+  ++      G   
Sbjct: 7   ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERVDLVILDVD--MPGMNG 64

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R +R      P+I ++       T+   ++G +D V KP     +LARV +  R  
Sbjct: 65  REVCRQLREKGIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLRSF 124

Query: 120 KVSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + + +         F          +G    L  +E  IL+YL    GK VA+  + S +
Sbjct: 125 EQTEDATFDIGPYEFRPSMKVLRTKEGRRIRLTEKETEILKYLYRAGGKSVARETLLSEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++ AV  + +E+HI +LR+K+  +      + +    GY +
Sbjct: 185 WG-YNAAVTTHTLETHIYRLRQKVEPDPSNAQLLLTDTG-GYRL 226


>gi|88857640|ref|ZP_01132283.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88820837|gb|EAR30649.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 246

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + + +     + G  +   N  +    L  +   ++  ++  L    +   
Sbjct: 14  IMLVEDDMSLAEWFGDYLTEHGYLVTLVNRGDAAVELIRTDLPELVVLDIML--PVKDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +  RA  Q P++ ++        +   + G DD V KP+  R +L+R+ A+ RR   
Sbjct: 72  DVCKEARAFYQGPILMMTARDDEMDEILGLELGADDYVTKPVKPRVLLSRIKALLRRSNT 131

Query: 122 SNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N                 + + +  R  ++ G+   +   E  +L YL  + G+ V++T
Sbjct: 132 PNQPNAETNLNEGLIELGSLYIDAPSRAVKLHGQTIAISSNEFDLLWYLAQSAGQVVSRT 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++F+ + G  +    +  ++  IS+LRKKL +       + +    GY +
Sbjct: 192 ELFNQLRG-SEYDGFDRSIDIFISRLRKKLGDDANHPYRIKTVWGKGYLL 240


>gi|328951450|ref|YP_004368785.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451774|gb|AEB12675.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +    ++             ++  ++  L       L
Sbjct: 6   LLIVEDDPRLARLLVNELAAAGYAPSAVHTGSDALAKLEEEAFELVILDLNL--PDLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +       ++ ++    +++ +    +G  D V KP   +E+LARV A  R  K 
Sbjct: 64  EVAHRVAGQKDTSILMLTARGDVESRVQGLYAGASDYVTKPFSLKELLARVHARLRERKR 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G + +    R   V G V PL  RE  +LE L+ NRG+  +K ++   +YG+ 
Sbjct: 124 HEDVIRVGTLELDRVKRQCRVDGAVVPLTAREYALLELLLVNRGRIFSKEELEDRLYGMD 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 N +E  IS LR+KL  +     + + R +GY 
Sbjct: 184 --LPASNTIEVFISNLRRKLAARGVQGLITTVRGMGYV 219


>gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 234

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D         G +++ F + E        +  D+  ++  L        E+
Sbjct: 8   VVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S VP+I +S        +   + G DD ++KP         I   +  + +  
Sbjct: 66  CKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKSP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  E   I+V  + R+    G    L  +E      L+    K + ++ I   I+G
Sbjct: 126 IKQDNVIEMFGIKVDFNQRNVFYNGTQIELSPKEFETFALLLKESTKVLKRSYILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  I +LRKK+        + +   LGY ++ 
Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLEE 227


>gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +      LQ     D+  ++  L       L+
Sbjct: 5   LLVEDDPAIAEPLARALGREGYEVSAQTTGGAA--LQQVGGCDIVILDLGL--PDMDGLD 60

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IRA    +P++ ++        +   DSG DD V KP    E    +  +      
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E   +RV               L  +E  +L  L+ + G  V++ Q+   ++
Sbjct: 121 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D +     ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 G-SDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 223


>gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
 gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E    L  ++  D+  ++          +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGL-LAINSEIDLVLLDVM--MPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   I+++   ++   +  +  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKNTKNSDCIEYREIKLYPGKQEAYCEEALLDLTTTEFALLTHFVQNPGQVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|302554679|ref|ZP_07307021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472297|gb|EFL35390.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++  +       L ++ + DV  ++  L       ++
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDAAHDGATALKLAAARQPDVVVLDLGL--PDMDGVD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  ++VP++ +S   S    ++  D+G DD V KP    E+LAR+ A  RR + +
Sbjct: 63  VIRGLRGWTRVPILVLSARHSSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPA 122

Query: 123 NNRAETGPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +   +           +     G+   L   E  +LE L+   G+ V + Q+   +
Sbjct: 123 GGGEDDVVVETDEFTVDLAAKKVVRAGKDVRLTPTEWHLLEVLVRGGGRLVGQKQLLQEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +G      E N +  ++++LR+KL  +        ++  +GY  + 
Sbjct: 183 WGPS-YGTETNYLRVYMAQLRRKLEADPSHPKHFITEPGMGYRFEK 227


>gi|116329782|ref|YP_799501.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332664|ref|YP_802381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|294653520|ref|NP_714877.2| two-component response regulator [Leptospira interrogans serovar
           Lai str. 56601]
 gi|116122675|gb|ABJ80568.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127531|gb|ABJ77623.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|293630770|gb|AAN51892.2| response regulator [Leptospira interrogans serovar Lai str. 56601]
          Length = 241

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           S     S E       +   D+  ++  L       +
Sbjct: 4   ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSL--PDIDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P+  ++        +   + G DD + KP   RE+  RV   +RR  
Sbjct: 62  EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                               ++    R   ++  +  + R+E  IL+ + A+ GK  ++ 
Sbjct: 122 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            I  A++G+ +    E +++SH+ ++R KL       + +++   +GY    N
Sbjct: 182 MILEAVWGM-EWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|94986248|ref|YP_605612.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556529|gb|ABF46443.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 221

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G ++E  +S             D+  ++  L        
Sbjct: 6   ILVIEDDLDIANVLRLDLTDAGYAVEHADSAMNGLIRAREDHPDLILLDLGL--PDFDGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD + KP H  E++ARV    R+   
Sbjct: 64  DVVQRLRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELIARVKVQLRQRVS 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +         +    R    + E   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 124 ESLSMGDLT--LDPQKRLVTYKNEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219


>gi|323489407|ref|ZP_08094636.1| YxdJ [Planococcus donghaensis MPA1U2]
 gi|323396901|gb|EGA89718.1| YxdJ [Planococcus donghaensis MPA1U2]
          Length = 234

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   + +            +E     +       +    +  ++  L        
Sbjct: 6   IFIVEDDLKIAELLAETLRKYHYEVETAKDFDQIIEEFEAFDPHLILLDINL--PSYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R +R  +  P+I IS        +   ++G DD + KP H+  +        R A  
Sbjct: 64  YWCRQLRQQTTCPIIFISARSGEMDQVFALENGGDDFITKPFHYEIVLAKIRSHLRRAYG 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K        G I ++ +  +  ++ EV PL ++E  ILE L+ +  K V++ Q+  
Sbjct: 124 EYAPKQEERSVRAGRIVLYMERMELHIKKEVIPLQKKECTILELLLTHYPKVVSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++      V+EN +  +++++RKKL +      +++ R  GY +
Sbjct: 184 ELWDDQAF-VDENTLNVNMTRVRKKLSDYGVLSAIETVRGAGYRL 227


>gi|319406454|emb|CBI80094.1| transcriptional regulator BatR [Bartonella sp. 1-1C]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N     G             +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPIGTTPASSLKRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVY-NDQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 254

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D     F   G  +   +       L ++ R D++ ++  L       L+
Sbjct: 34  LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAAGRPDLAILDVML--PDMDGLD 91

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +   +RA  S++P + ++   + +  +    +G DD V KP    E      R+      
Sbjct: 92  VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + + +   +    G+   L   +  +L++LMAN    ++K +I   ++
Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+VE +IS LRKK+        + + R  GY I
Sbjct: 212 G-YDFGGRANIVELYISYLRKKIDADRDP-MIHTVRGAGYVI 251


>gi|206973121|ref|ZP_03234043.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229182338|ref|ZP_04309612.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191798|ref|ZP_04318772.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206732005|gb|EDZ49205.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228591672|gb|EEK49517.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228601147|gb|EEK58694.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 12/212 (5%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
               +   +   ++ E           D++ ++           +L + IR   Q P++ 
Sbjct: 21  FLEMENFFVVEASNGEVALKCLEENHIDLAIVDIM--MPKMDGYQLIKKIRETLQFPILI 78

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--------RAETG 129
           +S        +     G DD + KP    EI+ARV A  RR    N+        +   G
Sbjct: 79  LSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYEFNDKAVKGKEKQIHMG 138

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +           E   L   E +IL   M   G+   K QIF +++  +    ++N 
Sbjct: 139 DLVLDHHSCTLYKSSETITLSATEYKILTLFMEEPGRIFTKKQIFESVWSDY-YCADDNT 197

Query: 190 VESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  HIS+LR+KL +       + + R LGY  
Sbjct: 198 IMVHISRLREKLEDSPKNPVYIKTIRGLGYRF 229


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G   +                 D+  ++  L        
Sbjct: 4   ILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIML--PEIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I    ++P+I ++   + +  +    +G DD + KP    E+LARV  + RR + 
Sbjct: 62  ELMDYI-RPLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +R + G + +    R  + QG+   L  +E  +L  L+ N+   + +  I+  I+G  
Sbjct: 121 TESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGSG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               +   V+ H+ +LRKK+  +     + +   +GY ++
Sbjct: 181 -YMGDSRTVDLHVQRLRKKIGWEHK---IKTVYKVGYRLE 216


>gi|270261000|ref|ZP_06189273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044484|gb|EFA17575.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D      G+ G S++   +     +       D   ++  L   G    
Sbjct: 3   ILVIEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEHGYDAIVLDVML--PGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           ++  ++R  S VP++ ++    +Q  +   + G +D + KP    E++ R+   + R   
Sbjct: 61  QIVEVLRKKSDVPILFLTARDGVQDRIHGLELGAEDYLIKPFSFTELVLRIRTLLRRGTV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +++    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYSLADLQLDVLRRKAVRQDVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKIDRPFAIKLIHTVRGIGYVCE 220


>gi|255099323|ref|ZP_05328300.1| DNA-binding response regulator [Clostridium difficile QCD-63q42]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G S++   ++E    +      D+  ++  L        
Sbjct: 4   ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSL--PDGDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++        +   D G DD + KP    E+++R+ A+ RR   
Sbjct: 62  DICKRVREASNVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNF 121

Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++           +                L   E ++L  LM N+   + +  I   ++
Sbjct: 122 TSENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
                 V++N +  ++ +LR K+ +       + + R +GY  + 
Sbjct: 182 DGNGSFVDDNTLSVYVRRLRNKIEDNPENPKNLLTVRRMGYKWNV 226


>gi|225012590|ref|ZP_03703025.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
 gi|225003123|gb|EEG41098.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
          Length = 230

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +         G  +   +       +       +  ++  +    G + 
Sbjct: 8   ILLVDDEPDIIEIVRYNLEQVGYQIFSASDGLEALKVADKELPHLIILDVMMPNLNGIET 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            E  R         ++ ++      + +  FD G DD V KPI  + ++++V      ++
Sbjct: 68  CEKLRQDDRFLNTIIMFLTARGEDYSFVAAFDVGADDYVTKPIKPKVLVSKVKGLLRRFK 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + +  +     + GE   LPR+E  +L  L +  GK   +  I   +
Sbjct: 128 EDIAPKTTLDFYNLVINREEYKLLIDGEERTLPRKEFELLYLLASKPGKVFKRDVIMEKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V +  ++ HI KLR+KL +        + + +GY+ 
Sbjct: 188 WGN-EVVVGDRTIDVHIRKLREKLGD----QFFKTIKGVGYTF 225


>gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVML--PGFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA   +VP + ++   ++Q  +    +G DD V KP    E++ R+  + +R  V
Sbjct: 83  LLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVILRLHRLVQRSGV 142

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    G+   L   +  +L YLM N  + ++K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRYLMENPKRVISKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 D-YDFGGQANIVELYISYLRKKI-DAVHPPMIHTVRGAGYVI 242


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      +              D+  ++  L   G    E
Sbjct: 6   LVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIML--PGLNGFE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           +   +R +  + P+I ++   + +  +     G DD + KP    E        +     
Sbjct: 64  ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++ S      G + ++ +  +  + GE  PL  +E  +L YL+   G  + +  +
Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 184 MNVVWG-FDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKL 228


>gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21]
 gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGL--PEIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +     +   + P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGEVRLDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R +S+ +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL    G D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKL----GVDIIQTVRGLGYLL 216


>gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR
 gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis]
          Length = 242

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +   +      E           D++ I+           
Sbjct: 5   ILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIM--MPALDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
           +L + +    ++P+I +S        +     G DD ++KP +          +   A  
Sbjct: 63  QLIKRLTNEYKLPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRRAFE 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK-RVAKT 171
                   +S      G + +           E + +   E R+L   M         K 
Sbjct: 123 FNEPEEKAISTQSTTVGRLTLLHTACVVYRGDETYSVTPLEYRLLNTFMQCSRTSIFTKQ 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           Q+F   +       ++N +   IS+LR K+ +       + + R LGY  
Sbjct: 183 QLFEQAWSETYWE-DDNTIMVQISRLRDKIEDQPRQPVYIKTVRGLGYKF 231


>gi|212710908|ref|ZP_03319036.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
 gi|212686605|gb|EEB46133.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G         +           D+  ++  L   G   + 
Sbjct: 17  LIVEDEPKLGQLLFDYLQASGYVPALLMRGDEVIPYVQKHFPDLILLDLML--PGLDGIS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD V KP   RE++ARV  I RR + S
Sbjct: 75  VCRELRQFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQHS 134

Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  A     +  +  +        ++  L   E R+L++L  N G   ++ Q+   +Y  
Sbjct: 135 STSANHHGTQLIIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILYDD 194

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  ++SH+  LR+KL +       + S   LGY  D
Sbjct: 195 H-RVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWD 235


>gi|223940723|ref|ZP_03632561.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223890614|gb|EEF57137.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++         +G  +    + +      +  R +V  ++  L       + 
Sbjct: 11  LVIDDEVQIRRLLRVSLEANGYRVFEAANGQTGLVEAAQRRPEVVLLDLGL--PDMDGVT 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + + +R  SQVP++ +S        +   D G DD + KP    E+LAR+     + +  
Sbjct: 69  VLKRLREWSQVPVVILSVRDREDDKVAALDHGADDYLTKPFGTAELLARLRVALRHSQSA 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   ++GP+ V    R  +V G+   L   E  +L+  + + GK +   QI   ++G 
Sbjct: 129 PDDALFKSGPLEVDLVARQVKVNGKPVKLTATEYSLLQLFVRHAGKVLTHRQILKEVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   + + +  +++ LR+K+         + ++  +GY +
Sbjct: 188 PNYLEQTHYLRVYMTHLREKIEATPSQPKLLLTESGVGYRL 228


>gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021]
 gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G+  +  +  E   ++ S    DV  ++  L       L
Sbjct: 7   ILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRML--PRRDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMI 225


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 QQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKK-----LRNKLGFD-----PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK     + ++ G        +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMI 238


>gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 81/226 (35%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++        +G ++      +    +  +   D+  ++          L
Sbjct: 4   ILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTVDLIILDIM--MPVMDGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
              + +R   +   P+I +S        +   + G DD + KP     + +++ A     
Sbjct: 62  SFIKTLRFSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVLRRF 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +      + +        V  +   L   E  +L  L  N  +   + Q+ + I
Sbjct: 122 EQVQTPSVVHHAGLVMDQTRHLCMVDNQEVELTATEFALLYLLAGNAEQVFTRNQMITRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            G  D  V +  ++  ++ +R+KL        + +   +GYS   N
Sbjct: 182 KG-SDYPVTDRSIDVQVATIRRKLGTYGS--RIKTVWGIGYSYKEN 224


>gi|310829315|ref|YP_003961672.1| hypothetical protein ELI_3753 [Eubacterium limosum KIST612]
 gi|308741049|gb|ADO38709.1| hypothetical protein ELI_3753 [Eubacterium limosum KIST612]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G       +G       S E           ++  ++  L        
Sbjct: 4   ILVVEDDEMLGAGLCYNLELEGFKTTLVQSFEEAGKKIEEKSWEMVILDVNL--PDGDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR   + PLI ++        L  F+ G DD + KP + + ++ R+ A++RR +V
Sbjct: 62  SLAKKIRLKDRTPLIFLTACDLDDDILKGFELGADDYITKPFNIKIVIKRINAVFRRTEV 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S           +  + R      +   L   E ++L+    N GK + +  +  +++  
Sbjct: 122 SRKELFICGNLEIDFEKRTATKNEKPLVLTPTEFKLLQLFCKNPGKVLTRKMLLESLWDN 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
               V+E+ +  ++S+LR K+ +   F  + +   +GY  +W
Sbjct: 182 EGNFVDEHTLTINVSRLRSKISDDT-FAYIKTIYGMGY--EW 220


>gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +   +    +GV +  F + +           D+  ++  L        
Sbjct: 6   IFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVIELNPDLIILDLML--PDISGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           EL + I+    +P+I ++   S +  L  F  G DD V KP   RE++ RV       R+
Sbjct: 64  ELCQDIKEMVDIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAILKRVRK 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + + S   +  + G+   L   E +IL  L     K  ++  I     
Sbjct: 124 SSSEKLSFNNGELILDSSKYEALLNGKNLNLTPTEFKILLVLAEKPEKVFSRYDIIEQAL 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G +     +  V++HI  +R K+         + +   +GY  
Sbjct: 184 G-YQFDGYDRNVDAHIKNIRAKMSKLSEDAKYIVTVYGVGYKF 225


>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
          Length = 257

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L    E  +
Sbjct: 25  ILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLML--PNEDGI 82

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            +   +R  +S +P+I ++   S    +   ++G DD + KP + +E        +  + 
Sbjct: 83  SICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQT 142

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E G   +    R  +  G +  L   E  +L+ L+ +  + + + +
Sbjct: 143 RELPGAPSQQMEVVEFGSWTLDLSTRTLKRDGNIVTLTTGEFSVLKALVQHPREPLTRDK 202

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 203 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 250


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALF--GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +++DD + +++          +G  +             +    DV  ++  L      
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTD 60

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR
Sbjct: 61  GYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 120

Query: 119 LKVSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +K +             I +    R   V G+   L  RE  + +  ++N  +   + ++
Sbjct: 121 VKKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 181 LEKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 225


>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMI--PGINGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
          Length = 282

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 43  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGL--PKMSGL 100

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 221 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLEK 260


>gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37]
 gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37]
          Length = 241

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 94/234 (40%), Gaps = 16/234 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++        +   +         +  +   + D+  ++  L   G+    
Sbjct: 8   LVIDDDQAIRELLAEYLSKNNFDVITAEDGLEMDKQRLIHQPDLIILDIML--PGDDGFI 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + +
Sbjct: 66  LCQRIRQTSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLRRTQFA 125

Query: 123 NNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +      +                +   +   L   + ++L   + N    +++ Q
Sbjct: 126 SEENQPSAKARYLLFSNWKLDTKQHLLIDDNKDEISLTGADFQLLTLFLDNTNSAISRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           I  A++G  D    E  ++ H+S+LR+ L++       + + R  GY    D N
Sbjct: 186 ICQALHGR-DAFANERGIDVHVSRLRQCLKDDAKSPKIIKTIRGAGYVFIADVN 238


>gi|91978347|ref|YP_571006.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91684803|gb|ABE41105.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S+       +    D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGLNFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     +  ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARSIRVDSDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSP 138

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          GP     +  +     E+  L  RER +L  L A  G+ V + ++    
Sbjct: 139 APATKAETIAFGPYLFHIERGELRQGEEIVHLTDRERDMLRVLAAAPGETVPRGELT--- 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                    E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 196 --GGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRL 237


>gi|311107856|ref|YP_003980709.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
 gi|310762545|gb|ADP17994.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       +    ++          L   ++ D+  ++  L         
Sbjct: 4   LVIEDEKKLAEYLRRALTEHNYVVDVALDGVTGLHLVRESQYDLVLLDVMLPA--MDGFS 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAIY 116
           +   IR  S+VP++ ++    L+  +     G DD + KP            L R +   
Sbjct: 62  VLAEIRKTSRVPVLMLTARDKLEDRVKGLRDGADDYLAKPFALSELLARVLALGRRSGHG 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   ++ N      + +    R     G    L  +E  +L  LM  +G+ +++ ++   
Sbjct: 122 QTETIAQNVLRIDGLELDLLRRRASRDGVRLDLTAKEFTLLALLMRKQGEVLSRLELAEQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 182 VWDI-NFNSNTNVVEVAIRRLRGKVDEPFDKKLLHTVRGMGYVLE 225


>gi|332654910|ref|ZP_08420652.1| DNA-binding response regulator MtrA [Ruminococcaceae bacterium D16]
 gi|332516253|gb|EGJ45861.1| DNA-binding response regulator MtrA [Ruminococcaceae bacterium D16]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      +   + +  +   S E       +   D+  ++  L     +  E
Sbjct: 6   LIVDDDPAICKLLEKVMRSNDMDSQAVGSGEQALQALETRTFDIILLDVNLG--DMEGFE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           + R +R      P+I IS       +L     G DD V KP        ++ A +     
Sbjct: 64  VLRRLRERGIKTPVIIISGRNEDYDSLYGLSLGADDYVTKPFRPVVLGAKVKALLRRSRE 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++ +   GP R            EV  L  RE  +L   + +  +   K  ++  +
Sbjct: 124 FSSAASQQLRCGPFRYDGATMRFFKGEEVLDLSSREGALLLLFLQHPNQVFTKDMLYERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G    AV++N +  +I++LR K+  ++     + + R LGY  
Sbjct: 184 WGTA-VAVDDNAIMVYINRLRGKIEPDRQHPVHIRTVRGLGYRF 226


>gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  ++     E      ++ R D+  ++  L       +
Sbjct: 3   LLVVEDEHSLREDIARKLRLSGYEVDACADGEAALETLAAERYDLVLLDLNL--PKVDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG-VDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +R H     + I    S  +          +D ++KP H  E+ ARV +   R+ 
Sbjct: 61  QVLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +   +  R   V  +   L R+E  +LEYL+ ++G+ V++ ++   ++ 
Sbjct: 121 IQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                   N +  HIS LRKKLR  LG+DP+ ++   GY
Sbjct: 181 GS-VDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGY 218


>gi|260462562|ref|ZP_05810769.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031758|gb|EEW33027.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D     F   G+           E +   A+ D+  ++  L   G+  L
Sbjct: 7   ILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIEMETILRRAQVDLIVLDVML--PGKSGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +RA    P+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 65  ELCRDLRAQYSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRRNGA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           +         +++                       L   E  +L+  + +  + + + Q
Sbjct: 125 AAEPKRATSKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQRVLTRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +     G  D + +   ++  +S+LR+K+ +       + + R  GY  
Sbjct: 185 LIELSGGDSDYSFD-RSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQF 232


>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYM 223


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         ++G  +   +  E      +     V  ++      G   L 
Sbjct: 10  LLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVM--MPGMDGLA 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R ++   +   +I ++    +   +    +G DD + KP    E+LAR+ A    +  
Sbjct: 68  VCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQFP 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP  +    ++    GE   L   E ++L+ L+   G  ++K+ I + ++  
Sbjct: 128 SLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E+N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226


>gi|317132867|ref|YP_004092181.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470846|gb|ADU27450.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 79/227 (34%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +   +                  D+  ++  L   G    
Sbjct: 4   ILIIEDDTAIAAIERDYLLVEQFEVVISQDGRSGMEKALQGSFDLILLDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +     G DD + KP     ++ARV A   +   
Sbjct: 62  TVCRRLRESLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 T PI+       + +D     V      L  +E  +L ++  N    + +  ++
Sbjct: 122 LRKTDRTAPIQIAIGSIRINTDTHRVYVNDTEIELKNKEYELLLFMAQNADVVLNRETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             I+G+ D   +   V  HI++LR K+  +      + + R  GY  
Sbjct: 182 ERIWGM-DAMGDNATVAVHINRLRDKIEEDPGNPRYIQTVRGAGYRF 227


>gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281437|gb|ABR89847.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             + G  ++  N+    + L  +   D   ++  L   G   +
Sbjct: 3   ILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIML--PGRDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+ + +R     P+I ++    +   +    +G DD + KP    E+LAR+ A   R   
Sbjct: 61  EVLQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R          L  +E  +L  L  +RG+ ++KT I   ++ +
Sbjct: 121 QESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE  I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEE 221


>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 248

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 24  LVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 82  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 141

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L   RG+ + +  + + 
Sbjct: 142 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVTE 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 202 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 244


>gi|223983580|ref|ZP_03633761.1| hypothetical protein HOLDEFILI_01042 [Holdemania filiformis DSM
           12042]
 gi|223964425|gb|EEF68756.1| hypothetical protein HOLDEFILI_01042 [Holdemania filiformis DSM
           12042]
          Length = 258

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   V++   A             + E      +  + D+  ++  L       
Sbjct: 5   LILIVEDDKAVRNLIAATLDTQDYRYLTAGTGEQGLQEATLRQPDIVLLDLGL--PDGDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAA 114
           + + R IR  S +P+I IS     +  ++  D+G DD + KP           +  R   
Sbjct: 63  VSIIRRIRTWSLMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARVRVTLRRLR 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     +     G + V        ++G+   L   E ++L  L  N GK +  T I 
Sbjct: 123 YIQNQNAESPVFTNGELTVDYSSGCVYLRGQELHLTPSEYKLLCLLARNVGKVLTHTAIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             I+G      +   +   ++ LRKKL      F  + +   +GY +
Sbjct: 183 KEIWGST-LDSDVASLRVFMTTLRKKLEKGPGSFQYIQTHVGVGYRM 228


>gi|24111908|ref|NP_706418.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 301]
 gi|30062021|ref|NP_836192.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 2457T]
 gi|24050711|gb|AAN42125.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30040265|gb|AAP15998.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281599865|gb|ADA72849.1| putative 2-component transcriptional regulator [Shigella flexneri
           2002017]
 gi|313646838|gb|EFS11295.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|332761444|gb|EGJ91726.1| transcriptional activator protein irlR [Shigella flexneri 2747-71]
 gi|332763836|gb|EGJ94074.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|332768456|gb|EGJ98640.1| transcriptional activator protein copR [Shigella flexneri 2930-71]
 gi|333021888|gb|EGK41136.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  +  LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKLLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|49473740|ref|YP_031782.1| transcriptional regulator [Bartonella quintana str. Toulouse]
 gi|49239243|emb|CAF25563.1| Transcriptional regulator [Bartonella quintana str. Toulouse]
          Length = 240

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRANA 128

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             + G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLATGASSTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYS-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|330828446|ref|YP_004391398.1| putative transcriptional regulator [Aeromonas veronii B565]
 gi|328803582|gb|AEB48781.1| Putative transcriptional regulator [Aeromonas veronii B565]
          Length = 215

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ +        +G      ++L   E    +A  D+  ++          L
Sbjct: 4   ILLVEDEALLAENLQRYLTREGYRCLWCDTLTAAEQQWLAA--DLVLLDR--TMPEGDAL 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +      A   +P+I ++    +   +   D+G  D + KP  H E+        +  ++
Sbjct: 60  DWLPQWLARKALPVIVLTARVEVSDRVAGLDAGARDYLTKPFSHDEL--LARIRAQLRQL 117

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +++         Q         E  +L  L+   G+ +++ +I + ++G +
Sbjct: 118 GDGTQAVGGLQLHPARMQASWQDAEVSFTPTEFALLTLLVRMAGRVLSREEILNRVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                   V++HI +LR+KL        +++ R +GY ++ 
Sbjct: 177 QAFPSTRTVDTHILQLRQKLPGLA----IETVRGIGYRLEV 213


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|260589189|ref|ZP_05855102.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331082605|ref|ZP_08331728.1| hypothetical protein HMPREF0992_00652 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540270|gb|EEX20839.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330400224|gb|EGG79866.1| hypothetical protein HMPREF0992_00652 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 231

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V  G       +G  +     ++    L  +   ++   +  L       L
Sbjct: 4   ILVLEDEDSVNRGIEFSLSREGYEVSSAKCIQEGWELFLAHPFEMIICDINL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  S V +I ++        +  +++G DD V KP     +L +V   ++R + 
Sbjct: 62  DFIRKVREKSNVYIICLTALDQEFDQVMGYEAGADDYVTKPFSLSVLLLKVNVFFKRTEK 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                  +      +           E     + E ++L+  + N  + ++K QI   I+
Sbjct: 122 KRAELLESGEWSFSIDEMTAKRRDSEENIEFTKNEWKMLKLFLDNPKQILSKNQILQGIF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            L  E V+EN V  +I +LR+K+    G  + + + R LGY  + 
Sbjct: 182 DLDGEFVDENTVAVNIRRLREKIEENPGKPEYIRNVRGLGYIWNK 226


>gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  S   D   ++  L       +
Sbjct: 3   LLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGL--PKADGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + +  R    + P+I ++        +D FD+G DD V KP H  E++ARV A + R  
Sbjct: 61  TVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + ++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY +D N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLVDPN 219


>gi|154484219|ref|ZP_02026667.1| hypothetical protein EUBVEN_01930 [Eubacterium ventriosum ATCC
           27560]
 gi|149734696|gb|EDM50613.1| hypothetical protein EUBVEN_01930 [Eubacterium ventriosum ATCC
           27560]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++        +   +    + +    L     +++  +    +      ++
Sbjct: 9   LMVEDDNKLREVLTKFLSRNDYEVLAAENGKVGLKLFYENSKNLDIVLLDGMLPDIDGVD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR HSQVP+I ++   S +  L+  ++G D+ + KP   + +L  +  + +R    
Sbjct: 69  VLKEIREHSQVPVIMLTARESEEDQLNGLNNGADNYITKPFLMKVLLVHMGKLIQRNGNE 128

Query: 123 NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +                   + GE      +E  +L Y+  N    + +  I  A++G F
Sbjct: 129 DTDVIEKGALKLEKQFRKAYINGEFVDTTPKEFDLLVYMCENEKVVLKRENILDAVWG-F 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   V++ + +LRKK+ +K     + S   +GY  + 
Sbjct: 188 DYDGDMRTVDTLVKQLRKKMTDKY--PYITSVYGVGYKFEV 226


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  S   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R + + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V+++++   +Y 
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLDC----DVIQTVRGLGYLL 216


>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S+    +         S   D+  ++      G   L
Sbjct: 7   ILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKL-SYSPDIVLLDIN--MDGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +L   IR     P+I ++   S Q  ++   +G DD + KP    E    ++      +R
Sbjct: 64  DLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRREQR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +  + +    R   ++G    L  +E  I++ L +N G+   + +I+  I+
Sbjct: 124 SHNKTKSKFSEDLIIDYSDRSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREKIYENIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +  V++ HI K+R K         + +   +GY  + 
Sbjct: 184 GI-DGNGDSVVIKEHIRKIRLKFNEFTDKGYITTVWGVGYKWEK 226


>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
 gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
          Length = 233

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D                 S++           D+  ++           
Sbjct: 4   ILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHVDLVLLDIM--MPEMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  QVCQEIRKFWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLRRTIS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +  +  +   Q +  PL  +E  +L   +  + +  ++  +  A++G +
Sbjct: 121 EEKVINFEGLCLDRESFEVYFQHKAIPLTPKEFAMLALFLDYQNRAFSREHLIHAVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           D  +E+  ++SH+  LR+KLR       D + +   +GY 
Sbjct: 180 DVTIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYK 219


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 59  LVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVML--PDMDGLA 116

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R ++ VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 117 VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 176

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +                   D  +    GE   +   E  +L +LM N  + ++K QI  
Sbjct: 177 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 236

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 237 RVW-NYDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 279


>gi|238922420|ref|YP_002935934.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238874092|gb|ACR73800.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 236

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+  +   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPDRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|291302971|ref|YP_003514249.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572191|gb|ADD45156.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 234

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +G  +E            ++   D+  ++  L   G   L
Sbjct: 13  ILVVEDEPTIAASVAARLRSEGHRVEIAADGPAAVAADAAFLPDLIVLDVML--PGFDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ R ++A   VP++ ++        L     G DD + KP   RE+ A      R    
Sbjct: 71  EVCRRVQARRPVPVLILTARDDETDMLVGLGVGADDYLTKPFSMRELTARVSALLRRVDR 130

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G +RV    R      E   L   E  +L YL  +    +++ Q+ +
Sbjct: 131 LSAPPPAEPVLRFGDLRVDRAARLVHRGDEEVHLTATEFDLLVYLTEHPQAVLSREQLLA 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++   D       V+SH+  LR+KL    G + + +   +GY
Sbjct: 191 QVWKWAD-GGGTRTVDSHVKALRRKL----GAEVIRTVHGVGY 228


>gi|257064499|ref|YP_003144171.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792152|gb|ACV22822.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 232

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 10/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G+   GF +    +   S  R D+  ++  L G  G  
Sbjct: 1   MIYYVEDDQNIRELALYALSSQGLEACGFAAAGDFKKACSKLRPDLVLLDIMLPGEDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R     ++VP++ ++   +    +   DSG DD + KP    E+++R  A+ RR 
Sbjct: 61  ILSWIRNNADMAEVPVMMLTAKGTEFDKVLGLDSGADDYLAKPFGMMELVSRCKALLRRP 120

Query: 120 KVSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +++            PI +     +         L  +E  +L  LM N G+   ++Q+
Sbjct: 121 AMAHPADGRDGAVTIGPISLSVRDHEAFAGTAELDLTLKEFDLLRKLMENPGRAFTRSQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
              ++ +     E   V++HI  LR+KL +      + +++ R +GY  
Sbjct: 181 LKDVWDVS-FVGETRTVDTHIQTLRRKLNDAYPGAGNAIETIRGVGYRF 228


>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 242

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 138 QHAQIQYHGILWNEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 236


>gi|163781991|ref|ZP_02176990.1| transcriptional regulator (PhoB-like) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882523|gb|EDP76028.1| transcriptional regulator (PhoB-like) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 223

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 82/223 (36%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +  +D   +     A    +G  ++ F               D+  ++  L    G +V
Sbjct: 5   IL--EDDEDIALVVEAALKREGFEVKSFQRALEFFPALEEKTPDLVIVDVMLPDLDGFRV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
             + +       VP++ ++   +    L  F  G DD + KP   RE+ ARV A     +
Sbjct: 63  ARVMKNRPDLEDVPIVFLTARATEVDRLKGFHLGADDYITKPFSIRELTARVRAVLRRVK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V  +     + G    L   E  IL  L+ N G+ V +++I   ++
Sbjct: 123 RGREGRVFRVGSLEVDVERVKVSIGGSEVKLTPSEFNILRCLLENYGRPVNRSRIIEEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D    +  V+ HI  LR KL        + + R  GY  +
Sbjct: 183 G-HDHEATDRTVDVHIKHLRDKLGAYG--KCIKTVRGFGYKFE 222


>gi|158425689|ref|YP_001526981.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158332578|dbj|BAF90063.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 233

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           +   D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  + +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 62  ELLRRLRQKTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGA 121

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  A               R+  +      +GE   L   E  IL+ L    G   ++ 
Sbjct: 122 KDGTAPREVDSAKVLERGLLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKSADDNFDMIETLYGVGYRF 230


>gi|21241501|ref|NP_641083.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106847|gb|AAM35619.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 239

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  ++   ++     + +  R D+  ++      GE  L 
Sbjct: 9   LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 66

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R + +    P +I +S   +    +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 67  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 126

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +A+         G           +  G    L   E  +L   + +  + +++ Q+
Sbjct: 127 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 187 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 232


>gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
 gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
          Length = 220

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G + +   +    + L  S++  +  ++  L    +   
Sbjct: 3   LLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGL--PDQDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R      P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   +Q +   +  +E  IL  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++ +  N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 180 TWNDDLGSNTLEVHIHNLRRKL----GKDRIRTIRGVGYRLE 217


>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 222

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +      D+  ++  +   G   +
Sbjct: 3   ILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMI--PGISGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A S VP+I ++   +L+  +   D+G +D + KP    E+LAR+    RR  
Sbjct: 61  EVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + V         +     L  +E  +LE+L  N+ K   +++I   +  +
Sbjct: 121 PESDAITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + ++++ +I+ LRKKL      + + + R +GY I
Sbjct: 181 H-FDSDTSIIDVYINFLRKKLDCSGCGNIIQTIRGVGYII 219


>gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L        
Sbjct: 3   LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGL--PTLSGF 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +  + S +P++ ++   + +  +   DSG DD + KP    E+ AR+ A + R  
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++E  E N +E HI  LRKK         + + R  GY ++ 
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSTLIRTIRGGGYLVEE 218


>gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067]
 gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171]
          Length = 231

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R+     P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 63  EVCRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   +S ++   GPI V        V G+   L   E  IL  L++  G+  +   I
Sbjct: 123 QMSQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLVSEPGRVFSSEYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR+   G + + +   +GY ++
Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        D+G  L   ++ +       +  ++   I   ++       
Sbjct: 7   ILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ +I+R +S +P++ +S   +L+  +D  + G DD + KP    E++A      R    
Sbjct: 67  EVCKIVREYSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRRVTT 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     A    + ++ + R   V  E+  L  +E  +L  L  N  +   +  +  
Sbjct: 127 IEAKKDEVKLAFEDGLSIYYENRSVYVNNELVELTAKEFELLYKLALNPQRVYTRDDLLY 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            I+G  D    +  V+SH+  +R KL       + + +   +GY  
Sbjct: 187 LIWGE-DYVGAQRTVDSHMKNIRSKLYAAGLKNNRIITVWGVGYKF 231


>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G       S E    + S     +  ++  L     +  
Sbjct: 6   ILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDS--EGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           E+ R +R  S VP+I  S   +    +  FD G DD + KP   +E+L+RV         
Sbjct: 64  EICRQLRKVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAYG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + +   G I + +  R     GE   L +RE  +L YL  NR   + K ++ S ++G
Sbjct: 124 QTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            F   VE + +  HI  LR+KL +       + +   LGY ++ +
Sbjct: 184 AF-SEVEPSTLTVHIRWLREKLEDDPASPKYIKTVWRLGYMLEVD 227


>gi|49474886|ref|YP_032927.1| transcriptional regulator [Bartonella henselae str. Houston-1]
 gi|49237691|emb|CAF26878.1| Transcriptional regulator [Bartonella henselae str. Houston-1]
          Length = 240

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRAST 128

Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    TG             +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLTTGASPTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYS-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ]
 gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ]
          Length = 246

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    ++E  + L      ++  ++  L   GE  +
Sbjct: 14  ILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQMDRLLGRELFNLVVLDLML--PGEDGM 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
              R +RA  +QV +I ++      + +   + G DD + KP + RE        +  +V
Sbjct: 72  SACRRLRASDNQVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRRQV 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +       +     G  R+    R+     +V  L   E  +L+ L+ +  + + + +
Sbjct: 132 PVVPGAPASEDEIVSFGDYRLSLATRELMKGDQVQMLTTGEFAVLKALVQHAREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 192 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 239


>gi|26986774|ref|NP_742199.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148545300|ref|YP_001265402.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031064|ref|YP_001666295.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719233|ref|YP_001746921.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272092|ref|ZP_08138528.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981367|gb|AAN65663.1|AE016193_4 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148509358|gb|ABQ76218.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857552|gb|ABY95959.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757236|gb|ACA70552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102788|gb|EGC00199.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  ++      L ++    +  ++  L   G    +
Sbjct: 4   LVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNL--PGIDGWD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           L   IR  S+V +I ++    +   L   D G DD + KP    E+    R         
Sbjct: 62  LLETIRKTSRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDEL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  +  +   + + S        G    L  +E  +L  LM+  G+ + ++QI S ++ +
Sbjct: 122 VEKSSLKIADLELDSVRHRVFRGGTRIDLTTKEFALLHLLMSRTGEALTRSQIISLVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NV++  I +LR K+ +      + + R +GY  + 
Sbjct: 182 -NFDCDTNVIDVAIRRLRSKIDDPFETKLIHTLRGVGYVFEE 222


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073503|gb|ADJ62902.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +         G +      +       + +   V  ++  L    G  +
Sbjct: 8   ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R  +  + +P+I ++     +  +   + G DD V KP   +E++ARV A    + 
Sbjct: 68  LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++ +   +   I +  + R   V  +   L + E ++L YL+A+  +  ++ Q+   ++
Sbjct: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ HI +LRK L +      V + R +GY +
Sbjct: 188 GDHTF-IEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKL 226


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +      +  D G +       E    L +  + D+  ++      G    +
Sbjct: 1   MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVM--MPGMNGFD 58

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   +  P++ +S    +      F +G DD V KP    E+L R+ A  RR K 
Sbjct: 59  VCRRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKD 118

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               A+              VF +  +  + G    L  +E  IL  L AN G+   + Q
Sbjct: 119 DLAFAKAVNREGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           IF+ I+G  D  V+E+ +   + K+R+K+         + +   +GY  
Sbjct: 179 IFAHIWGE-DSEVDESSITVFMRKIREKIEENPSQPKYLLTVWRVGYKF 226


>gi|257054664|ref|YP_003132496.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584536|gb|ACU95669.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M +L +D   + +        +G  +             +  R D+  ++  L   G   
Sbjct: 1   MVLLAEDDPAIAEPLSRALRREGYEVTVVADGPSALDTAAQDRIDLLVLDLGL--PGMDG 58

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  +  P++ ++        +   D+G DD V      R             
Sbjct: 59  LEVCRRLRATDRTLPVLMLTARTDEVDFVVGLDAGADDYV--AKPFRLAELLARIRALLR 116

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +    E+G +R+    R   V G    L  +E  +L  L+A  G+ V++ +I S ++ 
Sbjct: 117 RRAPEVLESGGVRMDVGARVVTVDGCEVALANKEFELLRVLLAKAGQVVSREEILSEVWN 176

Query: 180 LFDEAVE--ENVVESHISKLRKKL--------RNKLGFDPVDSKRFLGYSID 221
             D         ++ H+S LR+KL          + G + + + R +G+  +
Sbjct: 177 DLDPETSKTSKTLDMHMSWLRRKLARARFGEEGRRAGSECIATVRGVGFRFN 228


>gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD    +    A+  + G ++   ++ E    +      D+  ++           
Sbjct: 4   ILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEHIDLVVLDIM--MPKMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E  + IR  +   P++ ++           F  G DD + KPI   ++L R+ A + R  
Sbjct: 62  EFTKTIRETNDALPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS  +   G + +  +      +GE   LP++E  +L  L++  G+   + Q+   I+G
Sbjct: 122 IVSERKIVIGDVTLDYNSFTVSRKGETQVLPQKEFLLLYKLLSYPGQIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              E   E  V  H+ +LR++      F+ + S R LGY 
Sbjct: 182 SDSETGWE-TVTVHVGRLRRRFEGWEEFE-IKSVRGLGYK 219


>gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 223

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A +              +           +    R D+  ++  L   G   +
Sbjct: 3   ILIVEDQADILRHVKRALERADHEVSVAIDGPEAVEVVRERRFDLIVLDLSL--PGFDGM 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ + I      P +  ++    +   +   ++G DD + KP   +E+            
Sbjct: 61  EVMKRISPMDARPRVLMLTARGEIDDRVKGLNAGADDYLTKPFDMKELLARVEALGRRVL 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V +N  E G + +    R     G+   L  RE  +L+ L+   G+  ++ ++F  I+
Sbjct: 121 PGVDDNILEAGDVVLDVIHRVATRNGDRIELSPREFSLLQVLIREPGRTFSRGELFERIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G      E   VE  + +LRKKL        +++ R +GY +
Sbjct: 181 GREQTY-EAKTVEIFVMRLRKKLDVPGKPSAIETVRGIGYKL 221


>gi|34496216|ref|NP_900431.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34102070|gb|AAQ58437.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 237

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +   A     G  +      +         R D+  ++  L   G++  
Sbjct: 5   ILIVEDDARLAELIAAYLTKHGYQVSLHGRGDTAPAFILETRPDLVVLDVML--PGKEGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R H    ++ ++        +   + G DD + KP+  R +LAR+ A+ RR   
Sbjct: 63  DVCRDVRPHYGGRILMMTARDEDVDEILGLELGADDYLAKPVEPRRLLARIRALLRRSGG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE----------VFPLPRRERRILEYLMANRGKRVAKT 171
           +        +             +             L   E  +L  L  + G+ +++ 
Sbjct: 123 ARQEGGGVAVENDGITFGQFSISQATREALLGDEQIELTTAEFDLLWLLATHAGQVLSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            I S + G+      +  +++ IS+LR+KL +       + + R  GY  
Sbjct: 183 DIMSELRGIG-FDGLDRSIDARISRLRRKLGDNPDAPARIKTVRGKGYLF 231


>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   +     +  +    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQFNHDLAVIDLGL--PGIGGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  + 
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222


>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +  + +   +        + A  D   ++  L   G   L
Sbjct: 3   LLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIML--PGLNGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR      P++ ++    ++  +   D G DD + KP    E++ARV  + RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   T    V   + ++     +   L  +E  +LEY++ N+   +++ QI    + 
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ +I  LRKK+    G   + + R +GY +
Sbjct: 181 -YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220


>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 91/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G  ++  ++      L      D+  ++  L    +  L
Sbjct: 3   ILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWML--PQQSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           ++ + +R      P++ ++   ++   +   D+G DD + KP   R     + A +    
Sbjct: 61  QICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++++ +   + + S+ +     G    L  +E ++L   M   G+ +   QI+  
Sbjct: 121 NFEASNSSKLKCADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTYPGQLLTHEQIYQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   ++    NVV + +  LR+K+        +++    GY    N
Sbjct: 181 LWSEGEQ-PNSNVVPALMRLLRRKIEADGETPLINTVYGKGYRFGEN 226


>gi|160901586|ref|YP_001567167.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359230|gb|ABX30844.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     +       + + D+  ++  L  +     
Sbjct: 4   ILVVEDDKAISRLLELELTHVGYNVKIAKDGDEALKFYENFKPDIILLDIMLPIR--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR +     I +        +        DD V KP    EILAR+ A+ +R+  
Sbjct: 62  EVAEAIRDYDSDIGIIMITAKGELESKVKGLKNADDYVVKPFEIEEILARIEALLKRMGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G I ++    +  V  +   L   E  IL+ L  N+   V+K +I   I+G +
Sbjct: 122 TKELIKVGDIEIYPQNMEVLVNKKNVHLSLTEFNILKLLAINKNIVVSKEKILEEIWGYY 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE    N+VE +I+ LRKKL++      +++ R +GY I
Sbjct: 182 DEE-NNNLVEVYINYLRKKLKDSTQN--IETVRGVGYVI 217


>gi|86160274|ref|YP_467059.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776785|gb|ABC83622.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         ++G  ++   +        +S   DV  ++  L       +
Sbjct: 3   LLLVEDEDRVARVLARGLAEEGHQVDVCGTGLGAREQATSIAYDVVLLDWSL--PDLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R+   + P++ ++   S    +    +G DD + KP    E+LAR+ A++RR  
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELLARIEALHRR-G 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + + +  GP+ + +  R   V      L  RE  ++  L  + G+ +++T++   ++G 
Sbjct: 120 GATDVSALGPVTLDARRRALVVGARSETLTAREYGLVAELARHAGEVLSRTRLIETVWGQ 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +     NVV+ ++  LR KL         ++S R +GY +
Sbjct: 180 -EFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRL 219


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  S   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R + + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V+++++   +Y 
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLDC----DVIQTVRGLGYLL 216


>gi|226953556|ref|ZP_03824020.1| two-component regulatory system response regulator [Acinetobacter
           sp. ATCC 27244]
 gi|226835693|gb|EEH68076.1| two-component regulatory system response regulator [Acinetobacter
           sp. ATCC 27244]
          Length = 238

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              S + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|197302214|ref|ZP_03167273.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC
           29176]
 gi|197298645|gb|EDY33186.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC
           29176]
          Length = 236

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 17  ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 75  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +    +++ +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 195 -YATEADQHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232


>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 239

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  + G  + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLML--PGEDGLS 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R      P++ ++        +   + G DD + KP + RE        +     
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +      +      G  ++    R+    G+   L   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSTAEKVVSFGSYQLNLATRELSRDGDPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  +    E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 232


>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
 gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A   + G +++          L      D   ++  L       L
Sbjct: 3   ILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPYDAVILDLGL--PRLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + R  RA    VP++ ++   S    ++  D+G DD + KP    E+LAR+ A I R  
Sbjct: 61  SVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GP+R+        V G    L   E R+L+YLM + G  V+KT +   IY 
Sbjct: 121 GMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R  GY +
Sbjct: 180 AQDFDRDSNTIEVFVGRLRRKL----GVDVIETVRGQGYRM 216


>gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
 gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A      I    + G +++     +  + +  S   D   I+  L   G   L
Sbjct: 3   ILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRML--PGIDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            +      A  Q P + +S    +   +    +G DD + KP    E++ARV A    R 
Sbjct: 61  TMLEMRRSAGDQTPALFLSALGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R     G+   L  RE R+LEYL+ +  + V +T +   ++
Sbjct: 121 PTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLEYLIRHSDQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDRDFDKPLLKTVRGAGYTL 221


>gi|254237307|ref|ZP_04930630.1| two-component response regulator CreB [Pseudomonas aeruginosa
           C3719]
 gi|126169238|gb|EAZ54749.1| two-component response regulator CreB [Pseudomonas aeruginosa
           C3719]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALLAEGFTTTWVTLAGEALALQERQPADLLILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            G+  EA  E  ++SHI  LR KLR      + + + R LGY
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222


>gi|317471643|ref|ZP_07930986.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900868|gb|EFV22839.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I    + G       S E            +  ++  L   G    
Sbjct: 6   ILIVEDDRDLAEIAIDYMEEKGFGCIRAESGEEAFEALYQHPIRLIILDINL--PGMNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           +    +R  +++P+I IS   S    +     G DD ++KP    E+ +RV A       
Sbjct: 64  QFIEKLRNETELPVIFISARTSDTDKVKGLMLGGDDYLSKPYSLAELYSRVLALLRRTYG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +    +          +  +   +L YL A+ G+ + K ++F+ I+G
Sbjct: 124 YSVLKPLCFSDIIIDQKRKSVTKADSPLEMTSKMYELLAYLAAHPGEILTKERLFTEIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +      +V+  HI  LR+K+  +    + + +    GY  + 
Sbjct: 184 -YGSESTPSVLSVHIRWLREKIERDPSHPEHILTVYGKGYRFEE 226


>gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
 gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G+  +  +  E   ++ S    D   ++  L       L
Sbjct: 7   ILIVEDDLEAAAYLAKAFREAGIVSDHASDGESGLFMASENAYDALVVDRML--PRRDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 65  SLISELRRRGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 125 TPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFEPPLLRTVRGAGYMI 225


>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
          Length = 223

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGL--PEMDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
                 RA    +P++ ++        +   D+G DD V KP H +E+LAR+ A I R  
Sbjct: 61  TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ + G    V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+ N    D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKIGN----DLIETVRGLGYRM 216


>gi|166032195|ref|ZP_02235024.1| hypothetical protein DORFOR_01898 [Dorea formicigenerans ATCC
           27755]
 gi|226325708|ref|ZP_03801226.1| hypothetical protein COPCOM_03521 [Coprococcus comes ATCC 27758]
 gi|166027918|gb|EDR46675.1| hypothetical protein DORFOR_01898 [Dorea formicigenerans ATCC
           27755]
 gi|225205832|gb|EEG88186.1| hypothetical protein COPCOM_03521 [Coprococcus comes ATCC 27758]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F      +                + D+  ++          L
Sbjct: 8   ILIVDDDIELLKMLKNYFEIKRYDVMMAEDGTDALEKI-HKKPDIILLDIN--MPKIDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
           E+ R IR     P+I ++     Q  ++   SG DD + KP   +E+ AR+ A      R
Sbjct: 65  EVCRRIRGKVTCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELDARIIAHLKREER 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +     G + +    +  ++      L + E  I+E+L  N G+   + +I+  + 
Sbjct: 125 HKGKSEYRFHGDLSIDYGAKRVQIGENDLELTKLEYAIIEFLSMNPGQVFDRERIYEKVC 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +  VV   I ++RKKL      + +++   +GY 
Sbjct: 185 G-YDAEGDSRVVTELIRRVRKKLAEYTQTEYIETVWGMGYR 224


>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D +           + G  ++   +     +L +S R D   I+  L   G   L
Sbjct: 3   ILLIEDDSEAAAYMAKGLREAGHVVDHAATGTDGLFLATSERWDAMIIDRML--PGLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + +RA     P++ +S    +   +    +G DD + KP    E+       +    
Sbjct: 61  AIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R +   + +    R     G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 STQPETRLKVEDLEMDLLARTVTRGGQEIDLQPREFRLLEYLMRHGGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+++ HIS+LR+K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFELPLIHTVRGAGYTL 221


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++        +G  +    S      +    R D+  ++  L       L
Sbjct: 7   ILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIML--PDLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + + +R  + +P++ ++     +  +   + G DD V KP ++ E+    R        
Sbjct: 65  TVCQKVREFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +    R+  V+GE+  L   E ++L  L  + G+ V   Q+  A++G
Sbjct: 125 TNRPLTVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +   + + ++ +I  LR+K+  +      + ++  +GY ++
Sbjct: 185 -SEPMRDNDYLKVYIWHLRRKIEIDPRQPQLLLTEWGVGYRME 226


>gi|325921174|ref|ZP_08183042.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
 gi|325548344|gb|EGD19330.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
          Length = 234

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 13  LVVEDEAAIADTVLYALRSEGYAPEHCLLGRDALARLRADPADVVVLDVGL--PDINGFE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S VP+I ++        +  F+ G DD + KP   RE++ARV A  RR  V+
Sbjct: 71  VCRTLRSFSDVPVIFLTARNDEIDRVLGFELGADDYMAKPFSPRELVARVRARLRRRAVA 130

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G   +  +G        + PL R E  +L  L+   G  +++ Q+    +
Sbjct: 131 AVVEAGWQPHGAFAIDREGSRIRYGDALLPLTRYEYALLSALLQRPGAILSRAQLMDRGW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               ++ +   V++HI  LR KLR      DP+ + R LGY+++
Sbjct: 191 DASADSAD-RTVDTHIKTLRGKLRQAGVPADPIRTHRGLGYALE 233


>gi|294678369|ref|YP_003578984.1| TorCAD operon transcriptional regulatory protein TorR [Rhodobacter
           capsulatus SB 1003]
 gi|294477189|gb|ADE86577.1| TorCAD operon transcriptional regulatory protein TorR [Rhodobacter
           capsulatus SB 1003]
          Length = 232

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + +    A    D   +      E    + +    DV  ++  L   GE  L
Sbjct: 7   ILVVEDDPVGRQTLAAYLVKDNHRVSEAGDGEEMRRIFARGDVDVILLDINL--PGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+V +I ++        +   + G DD V KP + REIL R   + RR+  
Sbjct: 65  SLLRELRRQSEVGVIMVTSRREDVDRIVALELGADDYVTKPYNMREILPRTRNLARRVTA 124

Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +         + F             +  GE   + R E  +L   + + G+ +++ Q+ 
Sbjct: 125 ARVVKADESRKSFEGWTLDIAHWTLSDPAGEAVKMTRAEFELLATFVTHPGQVLSRDQLM 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +     E+ +   ++  + ++R+K+  +      + +   LGY  
Sbjct: 185 THVSRRGHESFD-RTIDVLVRRVRRKIEPDPAKPRLIVTVHGLGYVF 230


>gi|89074900|ref|ZP_01161350.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
 gi|89049297|gb|EAR54860.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++       + G  ++          + +S    +  ++  L       L+
Sbjct: 4   LVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPI--LDGLK 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  ++ P++ +S   S++  +    +G DD + KP    E++AR   + +R + 
Sbjct: 62  VLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQS 121

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S N +                      +  L ++E  +L+YLM +    V++  +F +++
Sbjct: 122 SVNISSEYSYDDLRLDIKSHRVWRGSRLLNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 182 S-YHFDPKTNVIDVHIANLRKKLEEGGETSLIHTVRGAGYVL 222


>gi|317130175|ref|YP_004096457.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475123|gb|ADU31726.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 84/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++      F      L+  ++ +           D+  ++           
Sbjct: 5   ILLVDDEQEMRKLLKVCFSASPFQLDEASNGDEAFLKVQENNYDLIILDIM--MPEIDGF 62

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIY 116
           EL  ++R    +++P+I ++     +  ++    G DD V KP   +E    +  V    
Sbjct: 63  ELLNMLRVELDTEIPVILLTALGDTERVVEGLKRGADDYVVKPFEPKELVARVESVLRRS 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +   N       +    +           PL ++E +I   L  N G+   +  +   
Sbjct: 123 KSISTKNESFTIKGLDFHPNSYQVIYNNMPIPLTKKEFQIFLRLAKNPGRVYDREHLLEL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            +GL D   E   V++H+  +R+KL+  K     +++   +GY 
Sbjct: 183 EWGL-DYEGENRTVDTHVKNIREKLKAIKYDEPIIETVWGIGYK 225


>gi|300772484|ref|ZP_07082354.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760787|gb|EFK57613.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 232

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + V         +   ++    +      +  S   D+  ++  L   G   L
Sbjct: 3   ILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGNYDLIILDVML--PGMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR   +  P++ +S     +  +D F S  DD + KP +  E+ ARV+   R++ 
Sbjct: 61  RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   E   +           +  + Q     L   E R+LE+LM N+ + V++  I  
Sbjct: 121 QTSRVEENNNLEFADLILDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G+ D  +  NVV+ +I+ LR K+        + +   +GY +
Sbjct: 181 SVWGM-DFNLSTNVVDVYINYLRNKIDKGYNKKLLHTVVGMGYVL 224


>gi|241114102|ref|YP_002973577.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|240868675|gb|ACS66333.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++   +      L  +   D+  ++  L     +  
Sbjct: 3   LLVVEDESKTGEYLQQGLSEAGFVVDLARNGMDGRHLAMTGDYDLLILDVML--PDLEGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++   +R A   VP++ ++   S+   +   + G DD + KP    E+LARV +      
Sbjct: 61  QILHALRSAELAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRSLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R +   + +    R     G+   L  +E  +LE L    G+ + ++ I S ++
Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRIALTSKEFSLLELLARRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDNFEPKLIHTVRGMGYVLE 222


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 238


>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +  +      G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIENRNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A++ D        +G      +         +S   DV  ++          LE
Sbjct: 12  LVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDV--QMPRMDGLE 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
               +RAH   +P++ ++   ++   +    +G DD V KP    E+ ARV A+ RR   
Sbjct: 70  TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSGR 129

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     T           +  D    GE   L   E  +L +LM N G  ++K +I  A+
Sbjct: 130 AQQTRSTVLTVADLTLNVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDAV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 190 WS-YDFGGQVNVVELYISYLRKKI-DSGRPALIRTVRGAGYIM 230


>gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A V +         G                +        ++  + G  G  V
Sbjct: 10  ILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVGV 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
           +   R I   ++VP+  +S   S+   +   ++G DD + KP         + A +    
Sbjct: 70  VTALRAIG--NEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTT 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     ++    GP+ V   G    + G    L +RE  +L  L  + G  +++ Q+   
Sbjct: 128 RATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRL 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D A + NVV+  ++ LRKKL        + + R +G+ +
Sbjct: 188 VWG-YDFAADTNVVDVFVTYLRKKLEVDGAPRVIHTVRGVGFVL 230


>gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +  G        G      +           +   +  ++  L    G  V
Sbjct: 6   ILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIGV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R   + +QVP+I +S        +     G DD + KP    E++ARVAA+ RR+ 
Sbjct: 66  LGTLRQ--SGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRRVG 123

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V  + R    QGE   L   E  +L +L+ N  +  ++ ++   ++
Sbjct: 124 TQEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELLRQVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                +     V++ +++LR KL  +        + R  GY  D
Sbjct: 184 --KQSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRFD 225


>gi|225016919|ref|ZP_03706111.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
 gi|224950313|gb|EEG31522.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++  G       +G      ++      L   A   ++ ++  L       L
Sbjct: 39  ILLVEDDRMLSRGIAFALSQEGHESICASTCREGLVLGRDAE--LALLDINL--PDGNGL 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R    +P+I ++   + +  +  F++G DD + KP     +  RV A+ RR   
Sbjct: 95  DLCTQLRRERSLPVIFLTANDTEREIVAGFETGCDDYIAKPFSVPVLKQRVRAVLRRADR 154

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +G +RV          G+   L   E  +LE L  N+G+ + +  +   ++   
Sbjct: 155 QETVFSSGALRVDYQRYSVHKDGKPVKLTATEYALLELLTKNKGRVLTRQTLIERLWDCN 214

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +  V+EN +  +I++LR+K+  +      V +   +GY
Sbjct: 215 ENFVDENALSVNIARLRRKIEEDPKHPRYVITVFGIGY 252


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGL--PEMDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A    P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G+   L   E R+L YLM ++G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKASVDGKPLKLTSHEYRLLAYLMHHKGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|218134349|ref|ZP_03463153.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989734|gb|EEC55745.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC
           43243]
          Length = 223

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +   +G  ++  +       +      D+   +           
Sbjct: 4   ILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIM--MPVMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 62  ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G      D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 122 ILNEHKIVIGSTEFDYDAMTVITDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ ++   F+ + + R +GY 
Sbjct: 182 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 219


>gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R A  QVP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLH 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R   
Sbjct: 62  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYDGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|303241326|ref|ZP_07327831.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302591165|gb|EFL60908.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G +     +G         +  E   +  + D+  ++  L       L
Sbjct: 4   ILIVEDDVALSNGIVLAMKKEGFEFIQCFDKKSAEKEFACQKFDLIILDINL--PDGSGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  +I+R  S VP+I ++        +  F+ G +D + KP     + AR+ A  R+   
Sbjct: 62  DFCQIVRNSSDVPVIFLTANDMEIDVVTGFEIGANDYITKPFSLAILRARILAQLRKPTE 121

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     I    D       G+   L + E+++L  L+ NRG  + +  +   ++ 
Sbjct: 122 KTKSGKYTVNGIYFDFDAMLFTKNGKEIELSKTEQKLLRILLENRGNILTRDTLIDRVWS 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              + V EN +   I +LR KL +       + +   +GY
Sbjct: 182 DGADFVNENALSVTIRRLRNKLEDDPSQPVYIQTVYGMGY 221


>gi|227889700|ref|ZP_04007505.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849745|gb|EEJ59831.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF        +  + R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   +   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +         L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENSRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|332703144|ref|ZP_08423232.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553293|gb|EGJ50337.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 231

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A +          +G       + +       S   D   ++  L   G   +
Sbjct: 7   ILLIDDDADLGSMLTEYLAGEGFETTTILNGDTGAEAALSGAYDAVILDVML--PGLGGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S++P+I ++        +   + G DD V KP + RE++AR+ A+ RR+  
Sbjct: 65  EVLRRVRQASRIPIIMLTAKGDHVDRIVGLEMGADDYVPKPCYPRELVARLRAVLRRMAD 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  R     +           R     G+   L   E  +LE L+    + V+K ++   
Sbjct: 125 AGERPPGETLVQGKLKLLPPQRKVSWDGKPLDLTVSEFNLLEILLHEGDRVVSKDELSER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
             G   E  +   V+ H+S LR+KL    G +  +++ R +GY 
Sbjct: 185 ALGRPREPYD-RSVDVHVSNLRQKLHAAAGDEICIETVRGIGYR 227


>gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 244

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G+ G ++   +     +        DV  ++      GE  L
Sbjct: 11  ILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMDSALQRDPADVIVLDLM--MPGEDGL 68

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115
            + R +RA     P+I ++        +   + G DD + KP   RE++AR++A+     
Sbjct: 69  AVLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRRLG 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             R    +     GP  +         +G+   L  RE  +   L  + G+ +++ Q+  
Sbjct: 129 PDRTLARDEVLTVGPFTINFSAMTVAREGQPLVLSSREYALFAALARSAGRPLSRAQLIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              G  D  V +  ++  +++LR+ + +       V +   +GY +  N
Sbjct: 189 RALGR-DAEVTDRAIDVQVARLRRAIGDDPSDPRHVRTVWGVGYVLADN 236


>gi|294142678|ref|YP_003558656.1| OmpR/PhoB family response regulator [Shewanella violacea DSS12]
 gi|293329147|dbj|BAJ03878.1| response regulator, OmpR/PhoB family [Shewanella violacea DSS12]
          Length = 246

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +    +L+         + D+  I+  L       +
Sbjct: 16  ILIVEDEPDLANLIKLNLNTLSYGVSHSTTLKHARETLEIKQFDLILIDRML--PDGDGI 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
            L + +R   Q  P + ++   S    +   ++G DD + KP         + A +   +
Sbjct: 74  MLCQQLRESGQTVPCMMLTAKDSEADIVLGLEAGADDYLVKPFSVLELRARVKALLRRSH 133

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +R +   I +    R+         L  RE  +L ++  +  +  ++ Q+  A
Sbjct: 134 LIEEQQESRLDFYGITINCTTREVIAFDTHLELTAREFDLLLFMAKHPKQVFSRMQLLEA 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G +  +  E+ V SHI++LR KL +     D V +   +GY  
Sbjct: 194 VWG-YSYSGYEHTVNSHINRLRAKLSHCASTADLVKTVWGVGYKF 237


>gi|257091637|ref|YP_003165280.1| hypothetical protein CAP2UW1_4708 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048646|gb|ACV37833.1| hypothetical protein CAP2UW1_4708 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++          L  +   D++ ++  L   G    
Sbjct: 3   ILVVEDEIKTGDYLRQGLTEAGFVVDLARDGLDGLHLAQTDAYDLAILDVML--PGIDGW 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + I RA   +P++ ++    +Q  +   + G DD + KP    E+    R+      
Sbjct: 61  AVLQGIRRAGKDMPVLFLTARDQVQDRVHGLELGADDYMVKPFAFAELLARVRIHLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 KTKESEYLRAADLELDLMRRRVTRAGRRIDLTVKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIKRLRLKIDEDFELKLIRTVRGMGYVLE 222


>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+++     F  +   +      +    L +    D+  ++            
Sbjct: 6   LLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIM--MPEMDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I I+        L  F+ G D+ V KP   + ++AR  A+ +R + S
Sbjct: 64  VCRKIRQQSDIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALMKRAEGS 123

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R +         V        +      L  +E  +L + + + G  +++  I + ++
Sbjct: 124 IGRGDDIAQFGALTVNKRAHTVTIASVPVSLTPKEYELLLFFIKHEGTVLSRDSILNGVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+ D   +   V++H+ KLR KL        + +    GY  +
Sbjct: 184 GM-DYFGDHRTVDTHVKKLRAKL--DTEQHLIQTMIRFGYKFE 223


>gi|254248501|ref|ZP_04941821.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124875002|gb|EAY64992.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 231

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIKLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRASRDGARLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLE 220


>gi|319404967|emb|CBI78569.1| transcriptional regulator BatR [Bartonella sp. AR 15-3]
          Length = 240

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSHA 128

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N     G             +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPIGTTSTSSLKRGDLIMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVY-NDQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 249

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +              + R D   ++  L       L 
Sbjct: 25  LVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVML--PDTDGLT 82

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           + R +      V ++ ++   +++  +    +G DD V KP    E++AR       A  
Sbjct: 83  VLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAGM 142

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R      R   G + +  D R+    GE+  L   E  +L +LM N  + ++KTQI   
Sbjct: 143 ARQPADGPRLTVGDLVMDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILDR 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     +VVE +IS LRKK+ +      + + R  GY +
Sbjct: 203 VWS-YDFGGRAHVVELYISYLRKKV-DAGREPMIHTVRGAGYVL 244


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +      L      D   ++  L       L
Sbjct: 4   ILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L RV  
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++  +E NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 KKVWG-YETQIETNVVDVYIRYLRNKIDRPGEDSYIQTVRGTGYVM 226


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +       D+G ++         +        D   ++  L   G   LE
Sbjct: 8   LLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLML--PGIDGLE 65

Query: 63  LPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R         P+I IS   +    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDA 125

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           + +    R+  V G+   L  RE  +L +   + GK  ++  + 
Sbjct: 126 LARNARMESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRAKVEVDPAQPRRILTVWGRGYKL 231


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +       ++   +   +  +            +  ++  L        
Sbjct: 4   ILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPA--MNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115
           ++   IR  + VP++ ++   S    +     G DD + KP    E +       R   +
Sbjct: 62  DVLTEIRKLNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTV 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      N   +   +++    R   +      L  RE  +L +L +N+G+   K QI++
Sbjct: 122 FNNHTEENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   + + ++  + S +SKLRKK++  KL  D + +   +GY  
Sbjct: 182 HVWNN-EYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGYRF 226


>gi|78062579|ref|YP_372487.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77970464|gb|ABB11843.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 231

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFTDKLLHTIRGMGYVLE 220


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +  S++                 D   ++  L   G+   
Sbjct: 3   LLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMAYIDMTSYDGIILDIML--PGKDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++   S++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +        +   D R     G    L  +E  +LE LM N+   + + QI    + 
Sbjct: 121 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD     NV++ +I  LRKK+  +     + + R +GY +  N
Sbjct: 181 -FDFEGGSNVIDVYIRYLRKKIDAQYEQKLIHTVRGVGYVMREN 223


>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 251

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I      G +++          L ++    V+ I+  L   G   L
Sbjct: 31  ILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVML--PGMDGL 88

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++   +R      P+I +S   S++  +   ++G DD ++KP    E+    +       
Sbjct: 89  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRST 148

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    RD         L  RE  +LEY M N GK ++KT I   ++
Sbjct: 149 SASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 208

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+V+  + +LR K+        + + R +GY +
Sbjct: 209 D-YHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 249


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML--PDIDGF 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 72  TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  +++KR +GY I
Sbjct: 192 W-QYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 243


>gi|218509607|ref|ZP_03507485.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli Brasil 5]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLE 62
           +++D   +          +G  ++     +  E        D+  +E       G ++  
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILELDAARRSGIELCR 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
             R+     ++P+I ++        +    +G DD V KP    E+    +      R +
Sbjct: 67  RLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRARPE 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V ++  + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++G 
Sbjct: 127 VLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 186 HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 273

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 86

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 246


>gi|159184131|ref|NP_353073.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139468|gb|AAK85858.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 241

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASS 121

Query: 119 --------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                                 E G + +  +      +GE   L   E  IL  L    
Sbjct: 122 REASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAQRP 181

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G   ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 GVVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKLVDGDFDMIETLYGVGYRF 237


>gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10]
 gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Antiqua]
 gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Nepal516]
 gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Pestoides F]
 gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola]
 gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1]
 gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92]
 gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component
           regulatory system [Yersinia pestis KIM 10]
 gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia
           pseudotuberculosis (type O:1b)]
 gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           Angola]
 gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 220

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G   +   +      L  +++  +  ++  L    +   
Sbjct: 3   LLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGL--PDQDGT 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R      P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   +QG+   +  +E  IL  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++ +  N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 180 TWNDDLSSNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|323483866|ref|ZP_08089243.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323692869|ref|ZP_08107094.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323402820|gb|EGA95141.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323503044|gb|EGB18881.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++  +  +    G      +       L  S   D+   +      G    
Sbjct: 4   ILVVEDDAKLRSLFCTVLNRSGYLTVPASGGREALELLDSEYIDLIISDIM--MPGMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R +    P++ I+     +   + F +G DD + KPI   E++ RV A+ +R +
Sbjct: 62  ELIRTLRGNGYSLPILIITAKERFEDKQEGFQAGTDDYMVKPIDVNEMVLRVGALLKRAR 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +R           D     V GE   LP++E  +L  LM+   K   + Q+   I+G
Sbjct: 122 IATDRRIICGKTTLDYDALTVTVDGEETLLPQKEFYLLYKLMSYPNKIFTRQQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D   +E  V+ HI++LR++ R+   F  + + R LGY 
Sbjct: 182 M-DSTSDERTVDVHINRLRERFRDCDDF-LIMTVRGLGYK 219


>gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 219

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F   +  +    SA  D   ++  L       L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCSAPYDAVVLDLTL--PEIDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  AILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +        ++GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPRKAIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp.
           AO22]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R A  QVP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  +    +  ++          +
Sbjct: 4   ILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVM--MPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR +S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIRENSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE+G             D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 122 LGNAAESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 182 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 230


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|306829063|ref|ZP_07462253.1| response regulator [Streptococcus mitis ATCC 6249]
 gi|304428149|gb|EFM31239.1| response regulator [Streptococcus mitis ATCC 6249]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKLLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGY 220


>gi|254465359|ref|ZP_05078770.1| DNA-binding response regulator ChvI [Rhodobacterales bacterium Y4I]
 gi|206686267|gb|EDZ46749.1| DNA-binding response regulator ChvI [Rhodobacterales bacterium Y4I]
          Length = 234

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +R+         +G+   L   E  +L+ L    G   ++
Sbjct: 122 ISSDAAGTSSPETKVMERGNLRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 DQLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADPEFAAIETLYGIGYRYNE 233


>gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei B7210]
          Length = 240

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223


>gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGL--PKADGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + +  R    + P+I ++        +D FD+G DD V KP H  E++ARV AI  R  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 227

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +       +      +     +  ++  L   G   L
Sbjct: 5   ILIVEDEPKIARLVADYLQQSGYATHHLAHGDEVMPWLADHAPALILLDLML--PGTDGL 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            L R I   +  +P+I ++        L   + G DD + KP   RE++ARV A+  R  
Sbjct: 63  TLCRRIGDQYPALPVIMLTARVEEVDRLLGLELGADDYICKPFSPREVVARVKAVLRRLH 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +   A   P+ +  DG     QG    L   E ++L+ +M   G+  ++ Q+   +Y 
Sbjct: 123 PQTEEAATPAPLSLDEDGWRALAQGTDLGLTAVEFQLLKVMMQAPGRIFSRDQLMDHMY- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
                V E  V+SHI KLR+K+ +     D + S   +GY 
Sbjct: 182 RDHRIVSERTVDSHIKKLRRKIADAYPERDIIHSVYGVGYK 222


>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
 gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G  ++  +S +   +L +  R D + I+  L   G+  L
Sbjct: 3   ILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGL--PGKSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +R   S +P++ ++   S Q  +   + G DD + KP    E+ ARV A + R +
Sbjct: 61  EIIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRAV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GPI V    +   V G    L   E R+LE L+ +RG+ ++K  +  A+Y 
Sbjct: 121 GIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEYRLLEELVCHRGEILSKESLADALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E  + NV+E  I +LR+KL  +    P+++ R  GY  
Sbjct: 180 PHNEDRDSNVLEVMIGRLRRKLDPEGTLKPIETMRGRGYRF 220


>gi|126463687|ref|YP_001044801.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105351|gb|ABN78029.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 228

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    S+       +     +  ++  L       +
Sbjct: 7   ILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGL--PDGDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQVP+I +S        +   D+G  D V KP    E     R     R  
Sbjct: 65  EVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+G
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              E  +   +  +I +LR KL +       + ++  +GY  
Sbjct: 185 PAHEE-DSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRF 225


>gi|323492751|ref|ZP_08097895.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG
           20546]
 gi|323313126|gb|EGA66246.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG
           20546]
          Length = 221

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +    + +   +G  +E  +  E           D+  ++  L       +
Sbjct: 4   ILVVDDDIELCHLLLDVLEAEGYLVECVHCGESALKYLEKKTVDLVLLDVML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I      P++ ++     ++ LD + SG D  + KP    E+L R+ AI+RR+ +
Sbjct: 62  QVARKICQRFATPILMLTALNDEESILDGYQSGADQYIAKPFKVPELLTRIKAIFRRVGL 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     +   ++           PL   E  +L YL+ N G  V+K ++   +    
Sbjct: 122 EKQRQANCRVSQDNNT----FDSSHLPLTGTESDLLGYLIKNEGVVVSKAELQIQVL-KK 176

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           + +  +  ++ HIS LR+K     L    + + R  GYS   N
Sbjct: 177 ELSPFDRNLDMHISNLRRKFVEAGLSKQHIKTVRGKGYSFVAN 219


>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R  +   P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSTEESVVEFGEFRLNLGTREMFRGEESMPLTSGEFAVLKALVTNSREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
 gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G ++    + +            +  ++           
Sbjct: 5   ILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVM--MPEMDGW 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIY 116
           E+   IR  +  +P++ ++        +   D G DD + KP    E++ARV        
Sbjct: 63  EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     +++  D     VQ     L  +E  +L+ L+ N  +   + Q+   
Sbjct: 123 VNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+G+ D   +E  V+SHI  +R KL+ +   F  +++   +GY +
Sbjct: 183 IWGV-DFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226


>gi|282897775|ref|ZP_06305774.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281197454|gb|EFA72351.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 259

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++             E     +    L       +  ++  L        
Sbjct: 32  IMVVDDDFSVRNLVHRFLSRK-YKTETAADGKSAMTLFEQFNPSLVILDWNL--PDINGY 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
           +L + ++  + V ++ ++        +     G DD + KP         + A +  I  
Sbjct: 89  KLCQDMQNRTNVLVLMLTSRNDETDKIKVLTGGADDFMTKPFSLVEVEVRVNALLRRIRY 148

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L  + G+  ++ Q+   I
Sbjct: 149 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 208

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKK+  +    + + + R  GY  +
Sbjct: 209 WGC-DYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 252


>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEARHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|182417947|ref|ZP_02949257.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237669309|ref|ZP_04529291.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378256|gb|EDT75790.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237655196|gb|EEP52754.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D    L   DG  +   ++ +    L       +  ++           
Sbjct: 10  ILIADDDAEILDILSILLSGDGYDITTASNGDEVVSLAD-ESFSLIVLDVN--MPKLSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  +  P++ ++           F +G DD ++KP  + E L RV A+ RR   
Sbjct: 67  LACSEIRKKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQ 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
             +        +           E          PL   E  ILE L  NR K  +   I
Sbjct: 127 YGSIPTQQSNPILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSMENI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +S+I+        +N +  HI  LRKK+  N      + +    GY I
Sbjct: 187 YSSIWNDSYIGASDNAIMVHIKNLRKKIEKNPKEPKYIKTSWGRGYYI 234


>gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLRQGLTEAGFVVDLAANGLDGHHLAMSEAYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +RA     P++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQTLRAAGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ S +R + G + +    R     G    L  +E  +LE L+  RG+ + ++ I S ++
Sbjct: 121 VQASVDRVQVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDDFDTKLIQTVRGMGYVLE 222


>gi|227878532|ref|ZP_03996466.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|293380947|ref|ZP_06626980.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|227861866|gb|EEJ69451.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|290922478|gb|EFD99447.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF        +  + R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   +   A   +P+I  S   +    +   D G DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLKYTSATEDLPVIIASAKTAEYDKVKNLDFGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|145224468|ref|YP_001135146.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145216954|gb|ABP46358.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +       ++      L      DV  ++  L   G   LE
Sbjct: 21  LVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGL--PGIDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR    
Sbjct: 79  VCRSLRTFSDAYVVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRLL 138

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +        G + +    R+  +  +   L R E  IL+ L    G  +++ 
Sbjct: 139 QSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   I         + +V+ HI  LR+KL +       + + R +GY +
Sbjct: 199 QLLEIIRDEP-WVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 247


>gi|29827189|ref|NP_821823.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604287|dbj|BAC68358.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++      G +G ++      E      +     V  ++      G   +E
Sbjct: 2   LVVDDDPGVREALDLGLGLEGFTVRLAEDGENALEQVADRLPSVIVLDV--TMPGLSGVE 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA  +  P+  +S    +   +    +  DD V KP    E+ AR+ AI R   +
Sbjct: 60  VVQSLRAQGRTLPVCMLSARDEVDDRVAGLAARADDYVVKPFSIAELAARLHAIVRLHAI 119

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 T           +    R     G    L  RE  +L  L    G+ +++ Q+ 
Sbjct: 120 VRLHESTAVRPLVIGDVTIEPARRVAARAGRDLHLTTREFDLLLALAHRPGQVLSRAQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
             ++G +   V+ NVV+  I  LRKKL        + + R +G
Sbjct: 180 EQVWG-YTWDVDTNVVDVFIGYLRKKLEADGRPRILQTVRGIG 221


>gi|49081966|gb|AAT50383.1| PA1157 [synthetic construct]
          Length = 237

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G+ ++   +         + R D+  ++  L   GE  L
Sbjct: 8   ILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + R +R     P++ ++        +   + G DD V KP+  R         +    A
Sbjct: 66  SICRQVRPQFDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    + R   G + + +  R+  + G    L   E  +L  L AN G+ +++ +I
Sbjct: 126 PEAGAPAADSKRLAFGRLVIDNAMREAWLDGTTIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F+A+ G+ +   ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 FNALRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLF 232


>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLH 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V           +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCKMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|307294458|ref|ZP_07574300.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306878932|gb|EFN10150.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        + G  +   +S         +   D+  ++  L   G   +
Sbjct: 6   IILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVML--PGTNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I IS   S    +   + G DD + KP   RE++AR+ AI RR+ V
Sbjct: 64  DLCRQIRRKSDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRRVGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
                E        DG                   L   E  +L   +++  + +A+ ++
Sbjct: 124 ERGPDEHRENEARFDGWVVNFPRRELRSPTGAVVDLTGAEFDLLGSFLSHPQRVIARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                        +  ++  +S+LR+KL       P+ + R +GY  +
Sbjct: 184 IELSRTRMG-DSSDRSIDVLVSRLRRKLTTDDRSAPITTVRGVGYMFN 230


>gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +         G  +              S   D+  ++  L   G+  L 
Sbjct: 5   LLAEDDRRLAELVKDYLESHGFQVVVEEVGHTVPRAVQSLDPDIVILDVML--PGKDGLT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           + + IR     P++ ++   S    +   + G DD V KP   R     I A +    + 
Sbjct: 63  ICKEIRPRYNGPILMLTARDSDADQVSGLEYGADDYVIKPAEPRVLLARIRALLRRYQQG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +F   R+ ++ GE+  L   E  +L       GK +++  +F+ IY
Sbjct: 123 EDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTFAKQPGKVLSREYLFNVIY 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G       +  ++  IS+LRKKL +     + + +    GY  
Sbjct: 183 GRP-YDGMDRTIDVRISQLRKKLGDHSDDPNRIKTVWGRGYLF 224


>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|255100490|ref|ZP_05329467.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306432|ref|ZP_05350603.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 241

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 11  LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTL--PDGTGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 69  ELCQYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 128

Query: 122 SNNRAETGPIRVFSDGR----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +                     +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 129 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 231


>gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+ +         G  +E             +   D   ++  L   G+   E
Sbjct: 5   LIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGWDALILDVML--PGKSGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++        +     G DD + KP    E++ARV +  +  +  
Sbjct: 63  VCREVRKSLHLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHIQIHERL 122

Query: 123 NNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E             +    R   + GE   L  +E  +L +L  N     +K  +F
Sbjct: 123 LEHREQQKEDAIIVKNLAIRPKERRVYLNGEEMNLANKEFEVLLFLAENPNIVFSKDTLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G+ D       V  HI++LR+KL  N      +++    GY  
Sbjct: 183 DRIWGM-DSVGNTATVTVHINRLREKLEKNADSSPFIETVWGAGYRF 228


>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NXNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +  +++  +  E       S   D+  ++  L       +
Sbjct: 3   ILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIML--PKMNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + IR      P+I ++    +   +   DSG DD + KP    E+    R  +  + 
Sbjct: 61  SILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRKG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++  + G I + +         +   L  +E  +LE+LM  +    +K  I   ++
Sbjct: 121 DILPDSSLKYGDIELDALNLKLSKDSKDVKLTLKESELLEFLMLRKNIVTSKELIIEKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD  VE N VE +IS LRKKL        + + R +GY ++
Sbjct: 181 G-FDSEVEPNNVEVYISFLRKKLSFLNSKVSIVTVRGVGYILE 222


>gi|315644732|ref|ZP_07897862.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279882|gb|EFU43182.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 214

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 11/220 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +     A F  +G ++      E    L    + D+  ++          +
Sbjct: 3   LLIADDEQHMLHILKAYFEKEGFTVFLAQDGEEAVDLFYHHKMDLVILDWM--MPKRSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I+      ++ ++             SG DD V KP   R +L R     ++L  
Sbjct: 61  EVCRTIKQLGHTKVLLLTAKGEADDEFAALQSGADDYVRKPFDPRILLLRA----KKLLH 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N +   G + V  + +      +      +E  +++Y +AN+G+ +++  +   ++G F
Sbjct: 117 LNAKVVIGNVTVDLEEQRIYRGEQDVMATHKEFELMKYFLANKGRILSRKMLLDHVWG-F 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V++HI +LR+K+        + + R +GYS+D
Sbjct: 176 DYFGDERTVDTHIRRLREKIGES----CIQTHRGMGYSLD 211


>gi|326775397|ref|ZP_08234662.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655730|gb|EGE40576.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++ +D     +        +G ++                  D+  ++  +    G  V+
Sbjct: 1   MVAEDDEKQAELVRRYLEREGHAVRVVGDGLAALDAVRHREPDLLVLDVMMPRADGLDVV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R    H ++P++ ++   +    L   D G DD + KP   RE++ARV  + RR + 
Sbjct: 61  RVLRS--EHRELPVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRR 118

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                  V     +  V G        E RIL  L A   +  ++ ++
Sbjct: 119 AAAAEPAAEDPVLRVGALVVDPARHEVSVDGATVECTPGEFRILAALAAGPDRVFSRQRL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G FD  +    V+ H+  LRKK+       + + +   +GY +
Sbjct: 179 LEELHG-FDRYISARTVDVHVMNLRKKIERAPRRPERLLTVFGVGYKL 225


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +  ++G +++             S+  D+  ++  L        
Sbjct: 4   ILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIML--PEINGY 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR +    P++ IS    +   +   +SG DD ++KP    E++ARV AI  R  
Sbjct: 62  NILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTF 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +++  + R   +      L  +E  I+EYL++NR K V+K  I   ++G
Sbjct: 122 SQYEQIISIYNLKIDLNTRKVYINDSEVQLTSKEYGIIEYLVSNRNKVVSKFAIIEYVWG 181

Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD     N ++ HI  +RKK+ +K  +  + + R +GY +
Sbjct: 182 DEFDPFSMSNFLDVHIKNIRKKIGDK-EYKIIQTVRGIGYLL 222


>gi|197106970|ref|YP_002132347.1| response regulator CenR [Phenylobacterium zucineum HLK1]
 gi|196480390|gb|ACG79918.1| response regulator CenR [Phenylobacterium zucineum HLK1]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G       +      L S A+ D+  ++  L        
Sbjct: 11  LLIVDDDQDLRGAIAEQLQAEGFETIEAPTAGEGVRLASEAKPDLVLLDVDL--PDMDGR 68

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +R +  Q P+I ++   + + T++  ++G +D V KP     +LAR+ A  R  +
Sbjct: 69  QACRQMRQNGVQCPVIMLTAAAADEDTVEGLEAGANDYVTKPYKFAVLLARIRAQLRSHE 128

Query: 121 VSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S           F        + +     L  +E  IL+YL     K V++ ++ + ++
Sbjct: 129 HSEGAVFRLGAYEFRPAAKLLVDDRQRKIRLTEKETNILKYLYRAGEKAVSREELLAEVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G ++  V  + +E+H+ +LR+K+  +      + ++   GY +
Sbjct: 189 G-YNAGVTTHTLETHVYRLRQKIEPDPANAKLLLTEAG-GYKL 229


>gi|120600124|ref|YP_964698.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291948|ref|YP_001182372.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560217|gb|ABM26144.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563638|gb|ABP74573.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319425239|gb|ADV53313.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D G  +   +  +F   + +    D+  ++       +   
Sbjct: 7   ILVVEDDTSLAEWISDYLLDHGYEVTVASQGDFALEMIADETPDLVLLDVM--MPVKNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ +  RA    P++ ++        +   D+G DD + KPI  + +    +        
Sbjct: 65  DVCKEARAFYAGPILFMTACVEDGDEIRGLDAGADDYLTKPIRPQVLLARIKALLRRVGD 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +     + + +  +   +  +   L   E  +L  L    G  V++ ++ + + G
Sbjct: 125 EEQKLQLVFDSLVLNATAKSVTIDKQPLDLNANEFDVLWLLALKAGTIVSRNELVAQLRG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + +    +  ++  IS+LRKKL++ L     V + R  GY  
Sbjct: 185 I-EYDGLDRSIDIRISRLRKKLQDALSQPYKVKTIRGKGYLF 225


>gi|116621521|ref|YP_823677.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224683|gb|ABJ83392.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 245

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 93/235 (39%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G       +G  +E   + E               +   ++  G+   
Sbjct: 4   ILVVEDELHLAEGLRFNLEAEGYQVEVVETGEAALERLVPGEPRFDVVVLDVMLPGKDGF 63

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +  A   +P + ++     +  L  F +G DD + KP     ++AR+  + RR +
Sbjct: 64  TVMSEMRHAGQFIPTLMLTARGHAEDILHGFAAGADDYLTKPFELAILIARIRGLLRRRE 123

Query: 121 V--------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          S +    G   V  D  +  V+ +VFPL   E  +L YL+ + GK
Sbjct: 124 WLNASVAPVPAPAEPSPDTFSFGDKSVHFDLLELHVREQVFPLTLMEANLLRYLIQHEGK 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            V++  +   ++GL +   +   +++ I +LR+ +         + + R +GY  
Sbjct: 184 PVSRKAMLEEVWGLHE-DTDTRAIDNFIVRLRRYVEEEPTKPRHLLTVRGVGYRF 237


>gi|311029642|ref|ZP_07707732.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +    G + +   S         S R D+  I+  L   G    
Sbjct: 7   ILIIEDDEDINRLLCNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLML--PGLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +I+   S VP+I IS     Q+ +    +G DD + KP    E+ AR+ +  RR + 
Sbjct: 65  DILKIVTKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYRD 124

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + + T  +         D +   V G V  L  RE  IL  LM++  K   K  +F +
Sbjct: 125 IPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++       ++N +  H+S +R KL +       +++   +GY +
Sbjct: 185 VWNEP-FYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKL 228


>gi|300694056|ref|YP_003750029.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
 gi|299076093|emb|CBJ35404.1| putative two-component response regulator transcription regulator
           protein [Ralstonia solanacearum PSI07]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             ++G  +   +S E       +    +  ++  L   G+  +
Sbjct: 3   ILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEAHTSLLAT-PHLVILDWML--PGKDGI 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    Q+P++ ++   +    +   ++G DD + KP    E+LARV A+ RR +
Sbjct: 60  AVCRELRERDPQLPILMLTARDATADRIAGLNTGADDYLTKPFVFDELLARVRALLRRAR 119

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++              + R     G    +  +E  ILE LM + G+ V++ Q+   ++ 
Sbjct: 120 LAPAAQRVIGDLRLDPNARVVTRGGHALDITPKEYAILECLMRHAGETVSRLQLAEQVWR 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A++ N+++ H+  LR+K+        + + R  G+ +
Sbjct: 180 ADLIAID-NLIDVHMKNLRRKVDPPGMPVLIHTVRGQGFRL 219


>gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria
           monocytogenes L99]
          Length = 237

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G ++           L    +  +  ++          L
Sbjct: 11  ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 69  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 128

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 129 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 189 FEKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 236


>gi|164686903|ref|ZP_02210931.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM
           16795]
 gi|164604293|gb|EDQ97758.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++  G       DG +     + E  + L      D   ++  L       L
Sbjct: 4   ILIIEDDRMLNKGVAFALKKDGYNTMCAYTKEEGKKLIQQNEVDFLLLDIGL--PDGSGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +L   I+     P++  +   + +  +  F+SG DD ++KP     +  ++ AI  R   
Sbjct: 62  DLCNEIKEKIDFPIVFFTANDTEEDMIKGFESGCDDYISKPFSIEVLKFKINAILKRSDI 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S        +++  D +    + E   L   E ++LE L  N+G+ + K  +   ++  
Sbjct: 122 HSKKLFVYKDLKIDFDAKRVYKRNEEIRLSATEYKLLEILCKNKGRAMTKEILLDKLWDY 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               V++N +  +I ++RKK+ +     + + +   +GY+ 
Sbjct: 182 NGNYVDDNTLSVNIRRIRKKIEDDSKNPEYIITLFGIGYTF 222


>gi|322388248|ref|ZP_08061852.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140920|gb|EFX36421.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDPVIRQQVGKMLSEWGFEVVMVEDFMEVLTLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D  V G+   L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDVHVNGKAISLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEEGLIGFIETKKGIGY 220


>gi|291561962|emb|CBL40771.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 241

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD + ++        ++G ++E F   +      S+   D+  ++      G   
Sbjct: 4   LIYVVDDESNIRTMMQLFLENEGFTVETFKDGQEACQAFSAKEPDMLILDIM--MPGIDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------- 112
           L L    R  S VP+I +S   +    +     G DD + KP    E +ARV        
Sbjct: 62  LSLCTYFRRQSHVPIIFVSAKDTPLDRVMGITLGSDDYITKPFLPLEFVARVKALFRRSD 121

Query: 113 -AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  +     R   G + +F       +Q     +   E   L Y++      V+K 
Sbjct: 122 PHFYDAGMTDPVTRFICGNLVLFPVSHRVTIQERDLNVTPTEFDFLLYMIQRADNAVSKK 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   I+       E ++ E  I +LRKKL +      +++    GY +
Sbjct: 182 ELAEQIWHFQGPNPEADIPEDFIKRLRKKLLSFGSTALIETVWGFGYRM 230


>gi|256374991|ref|YP_003098651.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255919294|gb|ACU34805.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +     +   + G  +         E   +  R D+  ++  L   G     
Sbjct: 11  LVIEDAEAIGAAVGSALREQGYQVRVRPDGRDLEGELTRFRPDLVVLDVML--PGRDGFA 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR  S   ++ ++    +Q  L   D G DD V KP    E++ARV+A+ RRL  +
Sbjct: 69  LLEVIRRGSGAGVVMLTARDGVQDRLRGLDRGADDYVTKPFVLAEVVARVSAVLRRLGRT 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  + G + V +D            L   E R+L YL A RG+ V KTQI +A++G  D
Sbjct: 129 PSTVQIGDLVVDADSAVVVRGNAQVELTATELRLLRYLAAQRGRVVGKTQILTAVWGYED 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+VE H+S LR+KL    G   + + R LGY +
Sbjct: 189 Y--DPNLVEVHVSALRRKLEEH-GPRLLHTVRGLGYVL 223


>gi|255322381|ref|ZP_05363527.1| two component transcriptional regulator, winged helix family
           [Campylobacter showae RM3277]
 gi|255300754|gb|EET80025.1| two component transcriptional regulator, winged helix family
           [Campylobacter showae RM3277]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G         E    L  S R D+   +      G    
Sbjct: 4   ILVAEDDENLNKIICLKLAQEGFLPLAAFDGEQAIKLLESERADLVITDIM--MPGLSGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + I+   +  P++ I+    ++     F +G DD ++KP++ +E++ R+ A+ RR K
Sbjct: 62  ELTKQIKLLDESLPVLMITAKSGMEGMEKGFVTGADDYMSKPLNLKELILRINALLRRAK 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ +                ++ GE   L  +E  +L  L++N GK   + +I   I+G
Sbjct: 122 IASGKRLRFKNSELDYMALSLKIGGEAVELAPKEFYLLFLLLSNPGKIFTRLEIMQEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +D   +E  V++H+ KLR+KL     F+ + + R +GY 
Sbjct: 182 -YDTDSDERAVDTHVKKLRRKLEGCTDFE-IATVRGIGYK 219


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|148658138|ref|YP_001278343.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570248|gb|ABQ92393.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          L  D G  +                  D+  ++           
Sbjct: 3   ILVADDDLASVKLTSFLLEDAGYKVIKAYDATGVLQAVEQRSLDLVLLDVG--MPKVSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRISDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSA 176
                 T   +        E            L   E R+L YLM N G+ ++ +QI S 
Sbjct: 121 DLVNPVTRISQGPLTLDPIEHTVLFEDGRSVVLTPIEFRLLYYLMQNTGRVLSASQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   E N+V  +I +LR K+  +      + + R LGY  
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYKF 224


>gi|17548710|ref|NP_522050.1| response regulator for cobalt zinc cadmium resistance transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430959|emb|CAD17640.1| probable response regulator for cobalt zinc cadmium resistance
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR  +
Sbjct: 61  QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         + +  R     G    L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|167968526|ref|ZP_02550803.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           H37Ra]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   ++        +    D+  ++  L       ++
Sbjct: 5   LVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDLVILDLGL--PDMSGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        +   D+G DD V KP    E      A V      
Sbjct: 63  VLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     ET    V   G+     G    L   E  +LE L  NRGK V + ++   ++
Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G    A E + +  ++++LR+KL +       + ++  +GY  +
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFE 225


>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++    +  +DG S+    +           + D+  ++           E
Sbjct: 5   LVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIM--MPQMDGYE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +R +   +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR KV
Sbjct: 63  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 122

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++        +           E + +P +E  +L  L +  GK +++ ++   ++GL
Sbjct: 123 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  ++ HI++LR++  + +    + + R LGY ++
Sbjct: 183 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 222


>gi|29375829|ref|NP_814983.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|229550253|ref|ZP_04438978.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257422851|ref|ZP_05599841.1| two component system response regulator [Enterococcus faecalis X98]
 gi|293383171|ref|ZP_06629088.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294780111|ref|ZP_06745484.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859819|ref|ZP_07105907.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307273452|ref|ZP_07554697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277615|ref|ZP_07558707.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288440|ref|ZP_07568428.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312899351|ref|ZP_07758684.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|29343290|gb|AAO81053.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933724|gb|AAS49395.1| response regulator [Enterococcus faecalis]
 gi|229304691|gb|EEN70687.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257164675|gb|EEU94635.1| two component system response regulator [Enterococcus faecalis X98]
 gi|291079510|gb|EFE16874.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294452786|gb|EFG21215.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295112803|emb|CBL31440.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850637|gb|EFK78386.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306500611|gb|EFM69940.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505880|gb|EFM75058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509979|gb|EFM79004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|311293502|gb|EFQ72058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027504|gb|EFT39436.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315156001|gb|EFU00018.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160348|gb|EFU04365.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315166770|gb|EFU10787.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315575685|gb|EFU87876.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|323480492|gb|ADX79931.1| two component system response regulator [Enterococcus faecalis 62]
 gi|327534882|gb|AEA93716.1| response regulator [Enterococcus faecalis OG1RF]
 gi|329577105|gb|EGG58578.1| transcriptional regulatory protein ResD [Enterococcus faecalis
           TX1467]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G      +  +       ++ E    I   L       +
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 63  AVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKR 167
           V+    +T      +     +                       +E  +L  L     + 
Sbjct: 123 VAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 FSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|16264749|ref|NP_437541.1| putative two component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15140887|emb|CAC49401.1| putative two-component response regulator [Sinorhizobium meliloti
           1021]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++    +             DV  ++  L        E
Sbjct: 6   LIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGHRTPDVVILDVML--PDFDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
             R IRA S VP++ ++        +   + G DD + KP + RE    L  +       
Sbjct: 64  TCRRIRAVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNGS 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R   + G    L   +  +L  L  N G+ +++ Q+  A+ G
Sbjct: 124 AAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVKG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    +  ++ HIS++R  +  +      + + R  GY  
Sbjct: 184 E-ELDAFDRSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224


>gi|332976862|gb|EGK13686.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   G   L
Sbjct: 12  ILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVML--PGSDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP   R +LAR       +  
Sbjct: 70  TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    R E G + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 130 APSEEVPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 190 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  IA         E FNS +           D+  ++  L       +
Sbjct: 6   ILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLML--PDVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA S +P+I ++        L   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 64  ELCKKIRAFSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRRTSQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                                  G+       E +I    +++ G+   +  I + +Y  
Sbjct: 124 PKTNIINHNNFQLHKDDYEARLNGKSIGFTAVEFKIFLLFISHVGRVFTREDIINNVYSD 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
               + +  +++HI  +RKK+ +   G +P+ +   +GY  
Sbjct: 184 T-TDISDRNIDTHIKNIRKKINDIQAGLNPIAAVYSVGYKF 223


>gi|307313311|ref|ZP_07592935.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320756|ref|ZP_07600167.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306893574|gb|EFN24349.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899324|gb|EFN29959.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++    +             DV  ++  L        E
Sbjct: 6   LIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGRRTPDVVILDVML--PDFDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
             R IRA S VP++ ++        +   + G DD + KP + RE    L  +       
Sbjct: 64  TCRRIRAVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNGS 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R   + G    L   +  +L  L  N G+ +++ Q+  A+ G
Sbjct: 124 AAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVKG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    +  ++ HIS++R  +  +      + + R  GY  
Sbjct: 184 E-ELDAFDRSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224


>gi|238764767|ref|ZP_04625710.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
 gi|238697058|gb|EEP89832.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G + E   + +       S       ++  L       +
Sbjct: 15  ILLVDDDVELGNMLREYLSGEGFNAELVLTGKEGIAAALSGEYTALILDIML--PDMSGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++        R   
Sbjct: 73  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 132

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++      + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 133 HPDAPSADDSVITHSDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 193 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNTLNIETVRSIGYRI 238


>gi|269839152|ref|YP_003323844.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790882|gb|ACZ43022.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 238

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDD--GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           ++ +D   + +           G  +   +S             D+  ++  +       
Sbjct: 6   LVAEDDPEMAEVVTFGIRMSWPGCEVSVASSGVEALEAFEQGHPDLVVLDVSMPPP--DG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S VP++ +S        +   D G DD + KP  H E+LAR+ A+ RR  
Sbjct: 64  FEVCRRIRERSSVPILMLSVRGGTLDKVRALDLGADDYLTKPFDHLELLARLRALLRRAS 123

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S  +A+             R   ++G+   L   E R+LE L+ + G+ +    I   +
Sbjct: 124 GSYRQAQQLAGADLLLDPCSRQVYLRGKPLHLTSTEYRLLELLVRHAGQVLPHDLIMERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G      +  +++  I +LR KL +       + ++  +GY  
Sbjct: 184 WGPT-YVGDHQLLKVFIRRLRHKLGDDPEQPRYIQTEWGMGYRF 226


>gi|126699276|ref|YP_001088173.1| two-component response regulator [Clostridium difficile 630]
 gi|255100802|ref|ZP_05329779.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115250713|emb|CAJ68537.1| Two-component response regulator [Clostridium difficile]
          Length = 241

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 94/234 (40%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   +      +   +G++ +    + +    L  S   D+  ++  L     +  
Sbjct: 6   LIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIML--PDGEGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S  P+I +S        L     G DD V KP   +E+  RV A  RRL  
Sbjct: 64  DICKEIRKTSNSPIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLSY 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------------LPRRERRILEYLMANRGKR 167
            ++          ++ +       +                L  +E +IL     N+ + 
Sbjct: 124 FSDAQNESKNLNNNEEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQI 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++K +++  ++G  D    +N +  HI K+R+KL +     + + + + LGY +
Sbjct: 184 ISKEKLWDKVWGE-DYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236


>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +R       P+I ++    L   L  F SG DD + KP    E+ ARV A+ RR 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRRT 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    RA          D  +   +G++  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFAKPLLHTVHGVGYRL 220


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E  ++         S   D   ++  L       +
Sbjct: 4   ILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLML--PEINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R IR     P+I ++   S+   +   D G DD + KP          R +L RV  
Sbjct: 62  EVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +         E   I +  + R      EV  L +RE  +L  LM N     ++  + 
Sbjct: 122 ETQDSTFHQTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G+ D  VE NVV+ +I  LR K+  K     + + R  GY +
Sbjct: 182 NKVWGVDD-GVETNVVDVYIRYLRNKIDVKGRPSYIQTVRGTGYVM 226


>gi|330820559|ref|YP_004349421.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia gladioli BSR3]
 gi|327372554|gb|AEA63909.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia gladioli BSR3]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V D   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVDYLKSGLSEEGWVVDTATDGEDGAWKAVEYDYDVVVLDVML--PKIDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA    P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKDTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV    R     G    L  +E ++L  L   RG+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLISRRATRNGIRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFSDKLLHTIRGMGYVLEV 221


>gi|317133076|ref|YP_004092390.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471055|gb|ADU27659.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D+  V         D G  +    +         + R D+  ++  L  K     
Sbjct: 4   ILVIEDQQDVNRMIAEALTDAGYQVTSAYTGPDGINALRNGRYDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRR 118
           E+ R +R  S +P+I +S    + T +D    G DD + KP         +        R
Sbjct: 62  EVLREMRPFSDIPVIVVSAKDMVGTKIDLLKLGADDYITKPFDLGEMTARVECALRRAGR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +        + +    +   +      L  +E ++L+ L+ ++ K   K  ++  I+
Sbjct: 122 QKDTPRLLRYKDMVLDDTAKRVTIGQTQLELTAKEYQLLKTLLLHQNKVFTKANLYETIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +   +++ V++HIS LR KL+        +++   LGY +
Sbjct: 182 -QEEYLGDDSAVKTHISNLRGKLKTANPNNAYIETVWRLGYRL 223


>gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGL--PKADGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + +  R    + P+I ++        +D FD+G DD V KP H  E++ARV AI  R  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 223

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L    + D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIQQKKFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
 gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++      +       ++     E       +A  D+  ++           
Sbjct: 3   ILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVM--MPKLNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++    L+  ++  + G D  + KP   RE+LA ++A+ RR  
Sbjct: 61  QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    G + +  D +D         L ++E  ++  L+  + + ++K QI   ++G 
Sbjct: 121 QEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +D    EN VE ++  LRKKLR       + S+R LGY
Sbjct: 180 YDSDAVENHVEVYVGFLRKKLRLLESRVSIQSRRGLGY 217


>gi|225859963|ref|YP_002741473.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225721750|gb|ACO17604.1| response regulator [Streptococcus pneumoniae 70585]
          Length = 217

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  ++++G  A   ++G  +      +            +  ++       +   
Sbjct: 3   ILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMILDLM--MPRKSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I     +P+I +S      T    FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINQKHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V         + E   L  +E  +L+ L+ ++ + +++ QI   I    
Sbjct: 121 IEDIWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEISKDV 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + + +GY I
Sbjct: 181 ADLPCDRVVDVYIRTLRKKL----ALDCIVTVKNVGYKI 215


>gi|254476121|ref|ZP_05089507.1| DNA-binding response regulator ChvI [Ruegeria sp. R11]
 gi|214030364|gb|EEB71199.1| DNA-binding response regulator ChvI [Ruegeria sp. R11]
          Length = 233

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  +Q+P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++         +   E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 ISGDAVATTTESKVMERGNLRMDPLRHSVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADPEFAAIETLYGIGYRYNE 232


>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
 gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       + G ++    ++     + +  ++D+   +  L        
Sbjct: 4   ILVIEDENRMAELLKRGLEESGHTVGTATNVSEGLRMFAYEKQDIIISDIML--PDGSGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R IR  ++  P++ ++   +    L+ FDSG DD + KP   RE+ AR++ + +R +
Sbjct: 62  DLCRDIRRQNETVPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILLKRCQ 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           +V+   +     G+   L  +E  +L + + N  + + +T+I   ++ 
Sbjct: 122 IPTVECIEYADLKVYLRTKSVSRNGQSIILTPKEYNLLLFFVQNPERILTRTEIAEKVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N ++ +I+ LRKK+        + +K  +G+  
Sbjct: 182 TH-FDTGTNFIDVYINYLRKKIDKNFNTKLIHTKPGMGFIF 221


>gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
           19718]
          Length = 223

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +LV  G      + G +++   +    E        D++ ++  L       L
Sbjct: 3   ILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVVDIGL--PDIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R      P++ ++   S++ T+   D G DD + KP    E++AR+ A I R  
Sbjct: 61  TLVQRLRHRKMCLPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   +   + + +      +  +   L RRE  ILE L+    + V+K ++   + G
Sbjct: 121 SITSTELQHDRLVLNTGSYTATLNDQPLLLTRREWTILETLLMASPRVVSKDKLLQNLTG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+ +  N +E H+S+LR K+    G + + + R +GY ID
Sbjct: 181 -WDKNITPNAIEVHVSRLRAKI-APGGIE-IRTVRGIGYRID 219


>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 244

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +        +G  +    +           + D   ++  L       +E
Sbjct: 22  LVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMML--PDFDGME 79

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +RA +  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 80  VLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTTV 139

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S++    G + +  D  +    G    L   E  +L YLM N  + ++K QI   +
Sbjct: 140 VADESSSIIAVGDLTMDEDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDRV 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R +GY +
Sbjct: 200 W-NYDFGGQANVVELYISYLRKKI-DAGRTPMIHTMRGVGYVL 240


>gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++  Y ++    G S+    + E       + R ++   +           
Sbjct: 21  ILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIM--MPKMDGY 78

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+     P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 79  DLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 138

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +          D            LP++E  +L  L++   K   + Q+   I+G
Sbjct: 139 INYSSSLIIGQTKLELDAYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 199 L-DTNTEERTIDVHIKRLRTRFEKTEDFQII-TVRGLGYK 236


>gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 219

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G +     +G +++   + +  +        ++  ++  L     + L
Sbjct: 3   LLLVEDDEILGEGLVEGLKMEGYAVDWLTNGKLADEALKINSYELIVLDLNL--PDMEGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +R    + P++ ++   ++   +   DSG DD V KP    E+ AR+ A   R  
Sbjct: 61  DILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVCARLRALARRNE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E   I +           E   L ++E  IL +LM+N G+ +++ ++  ++Y 
Sbjct: 121 GRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSNIGRVISRARLEESLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D  VE N VE HI  LRKKL        + + R +GY ID +
Sbjct: 181 -WDSDVESNTVEVHIHHLRKKLD----PSIIRTVRGVGYIIDED 219


>gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       + G  +      +    + +  + +++ ++      G    
Sbjct: 4   ILIVDDEKEIVDLIDLYLRNKGYCIFKAYDSDKALEILNLEKINLAIMDLM--MPGTDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + IR+ S +P+I IS        +   D G DD + KP    E++ARV A  RR   
Sbjct: 62  DLIKKIRSTSNIPIIIISAKCENHDKVIGLDIGADDYITKPFDPLELIARVNAQLRRCYL 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + N  ++  + +  D       G+   L  +E ++LE  M N+ K + K +IF 
Sbjct: 122 LNLEDNNENIIKSRDLILDKDKIIVTKGGKEVFLTLKEFKLLELFMENKNKVLTKQRIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  HIS LR K+ +       + + R +GY  + 
Sbjct: 182 NIW-KEEYLYDDNVIMVHISNLRDKIEDNNKENKYIKTIRGIGYRFEE 228


>gi|187777705|ref|ZP_02994178.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
 gi|187774633|gb|EDU38435.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  ++    DG + +G    +  +        D+  ++  L    E   E
Sbjct: 6   LIVEDEVSINDILVSALRADGYTAKGVFLAKDAQDALEIFHPDLILLDINL--PDENGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP + +E+        R    Y
Sbjct: 64  LCRYINNKYCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             ++V  +GR      E   L  +E  +LE+ + NR    ++  I + 
Sbjct: 124 KEKSEEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFIKNRNIVFSREIILNK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 184 VWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTVFGIGYVM 226


>gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|116054192|ref|YP_788636.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589413|gb|ABJ15428.1| two-component response regulator CreB [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALVLQERQPADLLILDVGL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            G+  EA  E  ++SHI  LR KLR      + + + R LGY
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222


>gi|329121388|ref|ZP_08250013.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
 gi|327469678|gb|EGF15145.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
          Length = 234

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 15/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D + +++  +         ++GF   E       +   D+  ++  L   GE  
Sbjct: 3   LIYCVEDDSGIRELVMYALKGQKFDVKGFAGAEKFYKELENKIPDLILLDIML--PGEDG 60

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------A 110
           L + + +     +S +P++ ++   S    +   DSG DD + KP    E++        
Sbjct: 61  LCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPFGIMELISRVKSLLR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R        K      +     +          G+   L  +E ++L+YL+ N+G  +++
Sbjct: 121 RSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVFLTLKEFKLLQYLVINKGIVLSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I  A++      +E   V+ HI  LRKK+++      +++ R +GY ++
Sbjct: 181 DRIMEAVWDSP-IEIESRTVDMHIKGLRKKIKD--CDKYINTVRGIGYRLE 228


>gi|325571287|ref|ZP_08146787.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325155763|gb|EGC67959.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G         +      ++  +    I   L       +
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWEAVFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMDGM 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 63  MVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRRSE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVA 169
           +            F    D                    L  +E  +L  L     +  +
Sbjct: 123 LVEKTTPEASDATFDIVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQVFS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 REQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 232


>gi|300853956|ref|YP_003778940.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434071|gb|ADK13838.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  ++  + +   +    S   D+  ++  L        
Sbjct: 4   ILLLEDDEALALGIDFTLQDEGYEVKRCSCVSEAKKTFDSETFDIVILDVML--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           ++ + IR  SQVP+I ++        +   D G DD + KP   +E ++R+        +
Sbjct: 62  DVCKYIRKRSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFISRIKAILRRTEK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  ++  I + +   +    G    L  +E ++L   M N  + + + +I   +
Sbjct: 122 NNSDKSDILKSEKIVLNTTKLEAYRNGCDMSLSMQEYKLLLLFMTNPKRAMNREEILDKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
                +  + N +  +I ++R+K+ +       + +KR  GY  +W+
Sbjct: 182 SDGSGDYFDTNTLSVYIKRIREKIEDDSSNPKYIKTKRGFGY--EWD 226


>gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       D+G  L           L       +  ++  L   G    
Sbjct: 11  ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIML--PGINGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+      +I ++    +   +   D G DD + KP   +E+LAR+ A  R    
Sbjct: 69  EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   +      +D             L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 129 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N+VE +I  LR K+ +      + + R +GY 
Sbjct: 188 FDFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYK 225


>gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 243

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+ +    + +    + ++   D+  ++          
Sbjct: 14  LILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQPIDLVILDI--KMPELSG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +  P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAATPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +        I    +         +          L   E +IL  ++ +  K   +++
Sbjct: 132 QNQQTPNRNLIYKNIEVNTEIHTAYIHSGDQKQTLNLTLTEYKILLLMLPHPHKVFTRSE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    L D    E  V+SH+SKLRKK+ +    + + + R +GY +D
Sbjct: 192 LMNQC--LPDRDALERTVDSHVSKLRKKIEDLGLRNMLINVRGVGYRLD 238


>gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G ++E                 D+  ++  L       LE
Sbjct: 5   LLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGL--PELDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    VP++ ++       T+   D+G DD V KP    E+           + 
Sbjct: 63  VARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S        +R+ ++ R   +  +   L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 121 STETPIVQGVRIDAESRRAWMGDQELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDAANPRYITTVRGVGFRFE 220


>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|313891367|ref|ZP_07824983.1| putative sensory transduction protein RegX3 [Dialister
           microaerophilus UPII 345-E]
 gi|313120142|gb|EFR43318.1| putative sensory transduction protein RegX3 [Dialister
           microaerophilus UPII 345-E]
          Length = 234

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D + +++  +         ++GF   E       +   D+  ++  L   GE  
Sbjct: 3   LIYCVEDDSGIRELVMYALKGQKFDVKGFAGAEKFYKELENKIPDLILLDIML--PGEDG 60

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------A 110
           L + + +     +S +P++ ++   S    +   DSG DD + KP    E++        
Sbjct: 61  LCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPFGIMELISRVKSLLR 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R        K      +     +          G+   L  +E ++L+YL+ N+G  +++
Sbjct: 121 RSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVFLTLKEFKLLQYLVINKGIVLSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I   ++      +E   V+ HI  LRKK+++      +++ R +GY ++
Sbjct: 181 DRIMEVVWDSP-IEIESRTVDMHIKSLRKKIKD--CDKYINTVRGIGYRLE 228


>gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + +     + F   G  +    +           + D+  ++      G   L
Sbjct: 5   ILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALKQV-EKQPDIILLDIN--MPGTDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR H   P++ ++        +  F  G DD + KP    E    +        R
Sbjct: 62  EVCKRIRDHISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHLRREAR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +G + +    R      +   L ++E  I+E L  N G+   K +I+  I+
Sbjct: 122 HNFEAQVNFSGDLTIDYSERCLFFGDKRVGLAKKEFDIVELLSQNPGQVFDKERIYEHIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   + +VV  HI ++R K+        V++    GY 
Sbjct: 182 G-YDSEGDSSVVAEHIRRIRTKIAAYTDHIYVETVWGCGYK 221


>gi|268316385|ref|YP_003290104.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333919|gb|ACY47716.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 246

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVL 61
           ++++D A V       F   G  +           L  ++ R DV  ++  L        
Sbjct: 11  LIVEDDADVAQALQDFFELQGYRVTHAPEAHKALELLTNAHRFDVVLLDVML--PDRSGF 68

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++     +  L  F  G DD + KP    E+ ARV AI +R +
Sbjct: 69  EVLQEMRRRGLETPVLVLTGRGEREQVLQGFGLGADDYIVKPFDPDEVAARVRAILQRTQ 128

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +                   +     E       E  +L YL+ +RG+ V + Q+   
Sbjct: 129 PPDRAPMQIYHIGDVEINFSTHEAYRGSERINFTAMELNVLRYLIHHRGEVVTREQLLRD 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++ +    VE   ++ HI+ +RKK+   L     +++    GY +
Sbjct: 189 VWHIVG-DVETRTIDRHIASIRKKIEPDLRQPRYIETVYGKGYRL 232


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +          +G ++           + S+   ++  ++  L       +E
Sbjct: 6   LVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVML--PELNGIE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P+I ++   ++   +  F+ G +D + KP    E+LARV  I R  + 
Sbjct: 64  VLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQ 123

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +E   +            R    +  V  L  RE  +L YL+ N+ +  ++  I S
Sbjct: 124 YPKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E N+V+ +I  LR+KL        + + R +GY I
Sbjct: 184 EVWG-YDFIGETNLVDVYIRYLRQKLDKGYRHKLIHTVRGVGYMI 227


>gi|163738248|ref|ZP_02145664.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163740186|ref|ZP_02147580.1| DNA-binding response regulator ChvI [Phaeobacter gallaeciensis
           2.10]
 gi|161386044|gb|EDQ10419.1| DNA-binding response regulator ChvI [Phaeobacter gallaeciensis
           2.10]
 gi|161388864|gb|EDQ13217.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 233

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  +Q+P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++         N   E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 ISGDAVATTTENKVMERGNLRMDPLRHSVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADSEFSAIETLYGIGYRYNE 232


>gi|330504532|ref|YP_004381401.1| two component transcription regulator protein [Pseudomonas
           mendocina NK-01]
 gi|328918818|gb|AEB59649.1| two component transcription regulator protein [Pseudomonas
           mendocina NK-01]
          Length = 240

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        D G      +              D+  ++  L   GE  L
Sbjct: 7   ILIVDDDPEIRQLLSTYLSDAGYQTCVASQGVEMRKRLEEQLIDLVVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P+I ++   +L   +   + G DD + KP   RE+LAR+  + RR + 
Sbjct: 65  SLCRELRVRSNIPVIMLTARGTLVDRIVGLEMGADDYLPKPFDPRELLARIKVVLRRTQS 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172
             +RA                                   + R+L  L+ +  + +++  
Sbjct: 125 FPDRARLDEATTLRFAGWRLDTATRQLRSPAGLVISLGNSDYRVLRLLLQHPNRPLSRDF 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    +   + A  +  ++  IS+LR+ L +       + + R  GY++
Sbjct: 185 LLGHAFDK-ERAPFDRSIDVCISRLRQHLEDDPRAPRLIRTVRNEGYAL 232


>gi|315444804|ref|YP_004077683.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315263107|gb|ADT99848.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +       ++      L      DV  ++  L   G   LE
Sbjct: 18  LVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGL--PGIDGLE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR    
Sbjct: 76  VCRSLRTFSDAYVVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRLL 135

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +        G + +    R+  +  +   L R E  IL+ L    G  +++ 
Sbjct: 136 QSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSRR 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   I         + +V+ HI  LR+KL +       + + R +GY +
Sbjct: 196 QLLEIIRDEP-WVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 244


>gi|312621388|ref|YP_004023001.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201855|gb|ADQ45182.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         +DG ++   NS   ++ L      D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNDGFNVI--NSYTAKDALNKLNDADLVILDIML--PDMEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR + 
Sbjct: 60  EVLKE-ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|299139571|ref|ZP_07032745.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598499|gb|EFI54663.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   ++        + G  +           L S        ++  L    G  +
Sbjct: 3   LLLVEDEPEIQSFVKQSLMEAGYEVHTAEDGSAATELASKHVYHGLIVDLGLPDQDGIDL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +   R     S  P++ +S   S+   +   + G DD + KP    E    +  +     
Sbjct: 63  ILQLRRSGVTS--PVLILSARRSVDDRVKGLELGGDDYLTKPFAIAELLARMRNLLRRNS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R      EV  L  +E  +LEYL  + G+ V ++ +   +
Sbjct: 121 SQAEDAMRLRVCDLELDMLKRRATRGDEVLNLSPQEFVLLEYLCRHAGRVVTRSMLLKEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+     + NVV+ HI +LR K+        + + R +GY +
Sbjct: 181 WGMR-IQPDTNVVDVHIYRLRGKIDTAGREPLIKTLRGIGYVL 222


>gi|269215796|ref|ZP_06159650.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269130746|gb|EEZ61822.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A ++     L  D+ +      +        ++   D+  ++           
Sbjct: 4   IMLVDDEASIRKLVEDLVTDEDLEFRYEANGADALKSVAAIPPDLIILDVM--MPKMDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR     +P++ +S    +      F +G DD + KP   RE++  V A  RR  
Sbjct: 62  STCRKIREMGATMPIVFLSAKSDIVDKCAGFAAGGDDYMTKPFDARELMLHVDAHLRRAA 121

Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +  +  E+                 ++       G    L R+E  I+  LM + G   +
Sbjct: 122 MIKSAVESEGKSKNSVITVGRLSLDNEQHRFTKDGSHIKLTRKEFSIIRTLMEHPGVVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           K Q+  A +G  +   E   +   + KLR K+ +       +++   +GY +D
Sbjct: 182 KNQLTEAGWGK-EFVGETTTITVFMKKLRSKVEDDPTDPRIIETVWGVGYRLD 233


>gi|256843981|ref|ZP_05549468.1| DNA-binding response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|262046126|ref|ZP_06019089.1| DNA-binding response regulator [Lactobacillus crispatus MV-3A-US]
 gi|256613886|gb|EEU19088.1| DNA-binding response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|260573456|gb|EEX30013.1| DNA-binding response regulator [Lactobacillus crispatus MV-3A-US]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +         + GF        +  + R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   +   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|167768474|ref|ZP_02440527.1| hypothetical protein CLOSS21_03033 [Clostridium sp. SS2/1]
 gi|240146957|ref|ZP_04745558.1| phosphate regulon transcriptional regulatory protein Phob
           [Roseburia intestinalis L1-82]
 gi|253578644|ref|ZP_04855915.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|291086902|ref|ZP_06344832.2| phosphate regulon transcriptional regulatory protein Phob
           [Clostridium sp. M62/1]
 gi|167709998|gb|EDS20577.1| hypothetical protein CLOSS21_03033 [Clostridium sp. SS2/1]
 gi|251849587|gb|EES77546.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|257200868|gb|EEU99152.1| phosphate regulon transcriptional regulatory protein Phob
           [Roseburia intestinalis L1-82]
 gi|291077351|gb|EFE14715.1| phosphate regulon transcriptional regulatory protein Phob
           [Clostridium sp. M62/1]
 gi|291560449|emb|CBL39249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 256

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+          DG ++    +         +   D+  ++  L        
Sbjct: 31  ILIVEDDNLLNKTLTYNLELDGYTITSVLNARTAAESLKTNIFDLVLLDINL--PDGNGY 88

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R+I   H    +I ++        +  +++G  D + KP     +  ++ A++  L+
Sbjct: 89  DLCRLIKPEHPDTVVIFLTANDQESNQIRGYEAGAVDYITKPFSISALQRKIKAMFAMLE 148

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +    +   + G+   L   E ++L   + N  + + + Q    +
Sbjct: 149 HHKPAKDIYEDGSLFLDFSEQFASLNGKPLALSAMEYKMLNLFLKNPKQVLTRQQFLEKL 208

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + ++ V+E+ + + IS++R K+        + +   +GY 
Sbjct: 209 WDVDEKYVDEHTLTTSISRIRSKIEADGDT-YIKTVYGMGYQ 249


>gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L R +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +    D  +    G+   L     ++L  LM      V +  +  A++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVRRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
           G  D+  + + + SH+ +LR+ +        + +   +GY +  + N
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFPVALLHTVHGVGYRLAEEPN 225


>gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947]
          Length = 219

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F+          +A  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSL--PGIDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A I R   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +   G + +        + G    L  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLY-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WEGDVSSNAVEVHIHHLRRKLGSA----FIRTVHGVGYTL 216


>gi|238855525|ref|ZP_04645829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|260665399|ref|ZP_05866246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934342|ref|ZP_06339611.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|313471862|ref|ZP_07812354.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|238831858|gb|EEQ24191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|239529223|gb|EEQ68224.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|260560667|gb|EEX26644.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301592|gb|EFA93867.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + V +     F  +  +++                +    I   L    +  +
Sbjct: 5   ILMVEDDSSVAEMMELFFKKEQWNVDIARDGVEAVDKFKERPDYYDMITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S+ +P+I ++   S    +   + G D+ V KP     ++AR+ A++RR  
Sbjct: 65  QVAKEVRAISESIPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALHRRAA 124

Query: 121 VSNNRAETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + N   +      F                  +  ++  L  +E  +L  +     +  +
Sbjct: 125 LENTDNDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPKQVFS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   ++G ++   EE  V++HI KLR+KL   +G   + +   +GY  D
Sbjct: 185 RDKLLELVWG-YEYYGEERTVDAHIKKLRQKLEE-VGPQIIQTVWGVGYKFD 234


>gi|255656550|ref|ZP_05401959.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 240

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++    +      +  +    ++ I+          +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIIDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMKLRENHNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 122 SNNRAETGPIRVFS--------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N  E    +V                + ++  V G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVENKEQKVDDDDGVFAIGGLELNENTKEVSVDGKHIKATPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  +I+  ++   D AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 FSADEIYERVWN--DNAVNTDTVMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEK 237


>gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 235

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + DG      + G ++   ++      + ++    ++ ++          ++
Sbjct: 7   LIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNETIHLAIVDIM--MPKMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R+    P+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 65  MTMKLRSKFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N       +  +            ++  V  E   L   E +IL  L+ N G+  +  +
Sbjct: 125 LNVINNLEEKNNNFIIDGLELNAETKEVFVDEESVKLTPIEFKILHLLIKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYEKVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89]
 gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89]
          Length = 240

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 8   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 66  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 125

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 126 AMGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 232


>gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A + D   A     G+             +  + + D+  ++           +
Sbjct: 17  LIAEDEAEIADILAAYLQRHGLRSLHAADGREALAMHQAFKPDLLLLDV--QMPQLDGWQ 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114
           +   IRA    P+I ++        L     G DD V KP +  E+            A 
Sbjct: 75  VLSEIRARGDTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRTQAV 134

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V         +         + Q +V  L   E ++L  LM    +  ++ ++ 
Sbjct: 135 KPATANVLRVGQFQIDLESHEASIFRDDQQQVLELTLTEFKLLASLMRAPKRVFSRAELL 194

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    L +   +E  V+SHISKLRKKL          S   +GY  
Sbjct: 195 THC--LPEGDTQERTVDSHISKLRKKLETHGIQGVPASVWGVGYRF 238


>gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++     E           D   ++  L        
Sbjct: 3   LLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIML--PKLDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA     P++ ++   ++   +   D G DD + KP    E++AR+  + RR  
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   T    +V  D +     G +  L  RE  ILEYL+ N+GK + + +I   I+ 
Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NV++ +I  LRKK+ +      + + R LGY +
Sbjct: 181 -YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220


>gi|90410002|ref|ZP_01218019.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
 gi|90329355|gb|EAS45612.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++       + G  ++  +       + +S    +  ++  L       +
Sbjct: 3   ILVIEDDLTTREFIAKGLREHGFVVDEADDGHKGLMMATSCEYQLVILDRMLPI--LDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +Q P++ +S   S++  +    +G DD + KP    E++AR   + +R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRHH 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S                          +  L ++E  +L+YL+ +    V++  +F ++
Sbjct: 121 SSTKIVTEYVYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLLEHAENVVSRMSLFESV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 181 WS-YHFDPKTNVIDVHIANLRKKLEENGELSLIHTIRGAGYVL 222


>gi|49474036|ref|YP_032078.1| two-component response regulator [Bartonella quintana str.
           Toulouse]
 gi|49239540|emb|CAF25897.1| Two-component response regulator [Bartonella quintana str.
           Toulouse]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           FG+ G S++     +    L  +   D+  ++  L+ +    L
Sbjct: 3   ILVIEDDHETGRYLEKAFGESGHSVDVAYDGDTGYALAETENYDIMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIIAELRAKGNKTPVLILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +   +   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDKNIVLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 224

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A    +          +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++          L  +   D+  ++  L        
Sbjct: 3   ILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVML--PSLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R   +  P++ ++    ++  +   + G DD + KP    E+LARV   + R  
Sbjct: 61  GILQTLRRGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +  + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 NHEPETLRSANLELDLLRRRVNRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRVKVDDPFEPKLIHTVRGMGYVLE 221


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    S      L    R D+  ++  L       L
Sbjct: 7   ILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIML--PDLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + + +R  +  P++ ++   + +  +   D G DD + KP ++ E+LAR+         
Sbjct: 65  TVCQRVREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPS 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G I +    R+  V+G +  L   E ++L  L    G  V   Q+  A++G
Sbjct: 125 VNRPLTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   + + ++ +I  LR+K+  +      + ++  +GY +
Sbjct: 185 N-EPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRL 225


>gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGL--PEIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +     +   + P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GPDVITTIRGLGYSLD 217


>gi|45655829|ref|YP_003638.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602800|gb|AAS72275.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 243

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           S     S E       +   D+  ++  L       +
Sbjct: 6   ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSL--PDIDGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P+  ++        +   + G DD + KP   RE+  RV   +RR  
Sbjct: 64  EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 123

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                               ++    R   ++  +  + R+E  IL+ + A+ GK  ++ 
Sbjct: 124 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            I  A++G+ +    E +++SH+ ++R KL       + +++   +GY    N
Sbjct: 184 MILEAVWGM-EWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 235


>gi|15596354|ref|NP_249848.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100607|ref|ZP_01364525.1| hypothetical protein PaerPA_01001632 [Pseudomonas aeruginosa PACS2]
 gi|116049089|ref|YP_792109.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892879|ref|YP_002441748.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234291|ref|ZP_04927614.1| hypothetical protein PACG_00130 [Pseudomonas aeruginosa C3719]
 gi|254239527|ref|ZP_04932849.1| hypothetical protein PA2G_00141 [Pseudomonas aeruginosa 2192]
 gi|296390473|ref|ZP_06879948.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|313106129|ref|ZP_07792384.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9947080|gb|AAG04546.1|AE004546_1 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115584310|gb|ABJ10325.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166222|gb|EAZ51733.1| hypothetical protein PACG_00130 [Pseudomonas aeruginosa C3719]
 gi|126192905|gb|EAZ56968.1| hypothetical protein PA2G_00141 [Pseudomonas aeruginosa 2192]
 gi|218773107|emb|CAW28919.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310878886|gb|EFQ37480.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 236

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G+ ++   +         + R D+  ++  L   GE  L
Sbjct: 8   ILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + R +R     P++ ++        +   + G DD V KP+  R         +    A
Sbjct: 66  SICRQVRPQFDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    + R   G + + +  R+  + G    L   E  +L  L AN G+ +++ +I
Sbjct: 126 PEAGAPAADSKRLAFGRLVIDNAMREAWLDGTTIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F+A+ G+ +   ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 FNALRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLF 232


>gi|325680782|ref|ZP_08160320.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324107562|gb|EGC01840.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 220

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++    + E    L       +  ++  L        
Sbjct: 4   ILIVEDDKELSSLLTDFLRAEGYTVSAVENGERAVELFERYGTRLVVLDINL--PDMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R ++  P++ +S     +  L+  D G DD   +  +  +IL        + + 
Sbjct: 62  AVCSKLRENADTPILIVSARTDKEDKLNGLDLGADDY-IEKPYDIDILLAKIKGIFKRRY 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + +    +  E+ G    L  +E  +L  L+ N+GK + K  +FS ++G  
Sbjct: 121 QRSMLSASGVTLNLANKTAEIDGNPVQLSAKEFDLLALLIENQGKALKKEYLFSTVWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           D   E   +  HI++LR+KL +       + +   +GY  
Sbjct: 180 DSDSELQTLHVHINRLRQKLGDDPKNAKRLLTVWGVGYKF 219


>gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 241

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D     F + G +       E    L  +   DV  I+          L
Sbjct: 20  ILVIEDDREAADYLQKAFNEAGHTAHVAGDGETGFALADTGDYDVMVIDRM--MPRRDGL 77

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 198 D-YHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYML 238


>gi|297180419|gb|ADI16635.1| response regulators consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain-protein [uncultured
           delta proteobacterium HF0010_01J10]
          Length = 253

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            + ++D   V D     F   G  + G                DV  ++  L        
Sbjct: 25  IMFVEDEEQVLDTLKRYFEKQGFDVFGERGYSDALSTARRFPPDVVVLDVMLNEGPEPEH 84

Query: 59  KVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              ++ + +R   +   P+I ++   S    L  FD G DD V KP   +E+ ARV A+ 
Sbjct: 85  DGFDVCKALREQEEYDGPVIFVTARASEADKLAGFDLGADDYVTKPFSIKELEARVTAVL 144

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR          G + V  D            L  RE+ +L YL+ + G  + + ++ +A
Sbjct: 145 RRTGGGRAIYRFGDVEVDLDNYVIRHPDREERLSNREQELLRYLVEHGGTVLPRGELLTA 204

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+  +   V    V++HI  +RKKL +       +++   +GY  
Sbjct: 205 IW-RYSPNVTTRTVDTHILNVRKKLGDNAASPRFIETLHGVGYRF 248


>gi|294012565|ref|YP_003546025.1| two-component system response regulator OmpR [Sphingobium japonicum
           UT26S]
 gi|292675895|dbj|BAI97413.1| two-component system response regulator OmpR [Sphingobium japonicum
           UT26S]
          Length = 236

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        + G  +   +S         +   D+  ++  L   G   +
Sbjct: 6   IILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVML--PGTNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I IS   S    +   + G DD + KP   RE++AR+ AI RR+ V
Sbjct: 64  DLCRQIRRKSDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRRVGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
                E        DG                +  L   E  +L   +++  + +A+ ++
Sbjct: 124 ERGPDEHRENEARFDGWIVNFPRRELRSPTGAIVDLTGAEFDLLGSFLSHPQRVIARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                        +  ++  +S+LR+KL       P+ + R +GY  +
Sbjct: 184 IELSRTRMG-DSSDRSIDVLVSRLRRKLTTDDRSAPITTVRGVGYMFN 230


>gi|260596416|ref|YP_003208987.1| DNA-binding response regulator CreB [Cronobacter turicensis z3032]
 gi|260215593|emb|CBA27829.1| Transcriptional regulatory protein creB [Cronobacter turicensis
           z3032]
          Length = 230

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + +    +   +G ++  F            A  D+  ++  L        EL
Sbjct: 8   LVEDETSISEALAYVMQLEGFTVRTFERGLPALDAARQALPDLVVLDVGL--PDISGFEL 65

Query: 64  PRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRR 118
            R  + A+  +P++ ++        L   + G DD V KP   RE+ ARV  I     ++
Sbjct: 66  CRQLLAAYPALPVLFLTARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQ 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G   +  D        +  PL R E  +L+ L+   G+  ++ Q+   ++
Sbjct: 126 QSGAQTVVRAGRFELNDDAAQIAFCDQPLPLTRYEYLLLKTLLLAPGRVYSRQQLMDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           G  +++ +   V++HI  LR KLR       P+++ R LGYS+  N
Sbjct: 186 GDANDSFD-RTVDTHIKTLRAKLRAVNPEASPINTHRGLGYSLAVN 230


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|170782486|ref|YP_001710819.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157055|emb|CAQ02228.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 236

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   ++    +   + G  S    E        D+  ++  L G     ++
Sbjct: 22  LVVEDDQAIRAAVVSTLTAERFVVRGLASGVELEEEVKGFLPDLVVLDWMLPGP--SGIQ 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S   +I ++   +++  L  F  GVDD + KP    E++ARV A+ RR    
Sbjct: 80  LAERIRRWSDAGVIMLTARDAVEDRLRGFGHGVDDYIVKPFALAELVARVGAVLRRRGRL 139

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E G + V  D       GE   L   E ++L YL A+RG+ ++KTQ+ + ++G   
Sbjct: 140 ASVVEIGDLLVDPDAGLARRGGEPLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVWGYDH 199

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + N+VE HIS LRKK+    G   + + R LGY ++
Sbjct: 200 --ADPNLVEVHISALRKKMEAH-GPRLLHTVRGLGYRVE 235


>gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 245

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G            + +      D+  ++      G+  L
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIM--MPGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA+S +P++ ++        +   + G DD ++KP + RE+LARV AI RR + 
Sbjct: 65  TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVA 169
                                  +               L   E  +L  L+    + ++
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   +    +    +  ++  IS+LR KL  +      + + R  GY +
Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E  N       L      DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLML--PELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R   + P+I ++   S+   +   D G DD + KP          R +L R+   
Sbjct: 63  VARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRITIE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G F+  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FNSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|126650368|ref|ZP_01722596.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
 gi|126593018|gb|EAZ87000.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
          Length = 231

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G       +        +  + ++  ++  L       L
Sbjct: 6   ILIIEDDEPIADLLSYGLMMEGFHTRIETTGSSGLSAIAIYKPNLLLLDWML--PDCSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +     +P++ I+    +   +   + G DD + KP   RE++AR+  I+RR   
Sbjct: 64  DICKQVTTTYNIPILMITAKSDITDKVIGLEYGADDYITKPFDLREVVARIRTIFRRLDQ 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +       I +  + R          L  +E  +L  L+  +GK   ++++
Sbjct: 124 TNSLEKQEKSQDIRFKNILILPEERLVIKDDINIELTPKEYDLLMTLIGQKGKIFTRSEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              ++G +D   +   V++HI +LRKKL      D + +   +GY  + 
Sbjct: 184 LDLVWG-YDFVGDTRTVDTHIQRLRKKLD---AGDIITTVFGIGYKFEK 228


>gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217]
 gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217]
          Length = 223

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G S++  ++        +S   DV  I+  L       L
Sbjct: 3   LLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRML--PEIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+ +    R    +     L  RE  ILE+LM  +G+   +T +  AI+
Sbjct: 121 ALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      D + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDRPFATDLIKTVRGAGYRID 222


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +                + D   ++  L        E
Sbjct: 24  LVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVML--PDLDGFE 81

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR       + +
Sbjct: 82  VLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 141

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + +  +  +    G++  L   E  +L YLM N  + ++K QI   
Sbjct: 142 AVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILDR 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 202 VW-NYDFGGQANVVELYISYLRKKI-DAGRQPMIHTLRGAGYLL 243


>gi|322389056|ref|ZP_08062622.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144234|gb|EFX39646.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L    G  +           +   +   +  ++  L        
Sbjct: 4   ILLVEDDEIIRQQVKQLLEQWGYEVVAVEDFMDVLGIFVESDPHLILMDIGLPL--YNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP     +LA+V         
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E     +     D   +GEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGTDQNLLEHRGAILNLKSTDLVYEGEVIKLTKNEFQILRVLFEHAGSIVARDDMMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGY 220


>gi|299782927|gb|ADJ40925.1| Two-component response regulator [Lactobacillus fermentum CECT
           5716]
          Length = 240

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +          E      ++  +D   +   L    +  +
Sbjct: 3   ILMIEDNRSVCEMMSMFFKKEKWDTTFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113
           ++   IR  S   P+I ++   S    +   + G DD V KP     ++AR+        
Sbjct: 63  QVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRRVQ 122

Query: 114 -----AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                    ++    +   +                 +  L  +E  +L+ L +   +  
Sbjct: 123 LSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 TREQLLQLVWD-YEFYGDERTVDAHIKKLRQKIE-KVGPKVIQTVWGVGYKFD 233


>gi|254518844|ref|ZP_05130900.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912593|gb|EEH97794.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +F  +G   +   ++             D+  ++  L       
Sbjct: 11  IMLVDDERELLSLLKEVFIKEGFKEIYAVDNGIDAILQVKEKNPDMIILDVNL--PDIDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR  S  P+I ++     +  +   ++G DD V KP + +E++ RV +  RR  
Sbjct: 69  YKVCDRIRKFSTCPIIFLTAMGEDEEKIKGLEAGGDDYVTKPFNIKEVVLRVKSQLRRGS 128

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      N    G I +  +  + +   E   L  +E  ++ +L+ N  K  +K+ +  A
Sbjct: 129 IVSEVKTNLYTFGNISINEETGEVKKGKENILLTAKEYSLILFLVKNINKVFSKSSLCEA 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G ++    +N +  HI  LR+KL +       + + + +GY +
Sbjct: 189 IWG-YEYDGYDNTIMVHIRHLREKLEDNPSDPKHIKTLKGIGYKL 232


>gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGL--PKADGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + +  R    + P+I ++        +D FD+G DD V KP H  E++ARV AI  R  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|87121149|ref|ZP_01077040.1| Response regulator [Marinomonas sp. MED121]
 gi|86163641|gb|EAQ64915.1| Response regulator [Marinomonas sp. MED121]
          Length = 264

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 82/245 (33%), Gaps = 31/245 (12%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLE 62
           ++DD A +++           ++   +S E      +  +  D+  ++  L   GE    
Sbjct: 9   VVDDDAEIRNLLKTYLEKHQFNVRTADSGESFLADFEQDSAADLIILDIML--PGEDGFS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------------- 106
           + R +R  S VP+I ++        +   + G DD + KP + R                
Sbjct: 67  VCRSLRMKSLVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAIFRRIEQI 126

Query: 107 ----------EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
                     +  ++         +    +                 G    L   +  +
Sbjct: 127 ALSQEVSTEGQQESQETHQKHSPSLQRRFSFADFCLDALSRELSHQDGTKCALSGADYNL 186

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRF 215
           L   + N G  +++  I     G  D A  +  ++ HIS+LR++L  +      + + R 
Sbjct: 187 LMLFLNNPGTVLSREYIAENTRGR-DSAPLDRFIDVHISRLRQRLNEDARHPQLIKTIRG 245

Query: 216 LGYSI 220
            GY +
Sbjct: 246 EGYIL 250


>gi|311104327|ref|YP_003977180.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
 gi|310759016|gb|ADP14465.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
          Length = 230

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L      D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R A  QVP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|308176012|ref|YP_003915418.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743475|emb|CBT74447.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G++     + +    L      ++  ++  L    E   
Sbjct: 4   ILIIEDEPRISSFVAKGLRAAGLTSSIAETGQDGFNLAIEGDHELIILDLGL--PDEDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118
            + R +R A    P+I ++   S++ T+    +G DD +             R+      
Sbjct: 62  SVLRRLRVAQIDTPVIILTARGSVEDTVAGLQNGADDYMAKPFHFDELLARVRLRLRTED 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      + +    R   V      L  RE  + E  + N G+ +++ Q+ S ++
Sbjct: 122 NAPEVSSLTHENLHMDLLRRRVTVNEREVDLSAREFALAEAFLRNPGQVLSREQLLSRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     NVV+ ++  LR KL    G +  ++ R  GY +
Sbjct: 182 G-YDFDPGSNVVDVYVRYLRNKL----GSERFETVRGFGYRL 218


>gi|317499119|ref|ZP_07957398.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291524077|emb|CBK89664.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|316893639|gb|EFV15842.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+          DG ++    +         +   D+  ++  L        
Sbjct: 4   ILIVEDDNLLNKTLTYNLELDGYTITSVLNARTAAESLKTNIFDLVLLDINL--PDGNGY 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R+I   H    +I ++        +  +++G  D + KP     +  ++ A++  L+
Sbjct: 62  DLCRLIKPEHPDTVVIFLTANDQESNQIRGYEAGAVDYITKPFSISALQRKIKAMFAMLE 121

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +        +    +   + G+   L   E ++L   + N  + + + Q    +
Sbjct: 122 HHKPAKDIYEDGSLFLDFSEQFASLNGKPLALSAMEYKMLNLFLKNPKQVLTRQQFLEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + + ++ V+E+ + + IS++R K+        + +   +GY 
Sbjct: 182 WDVDEKYVDEHTLTTSISRIRSKIEADGDT-YIKTVYGMGYQ 222


>gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074]
 gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 232

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   V     A+    G  +    S E     L  +       +   L    +  
Sbjct: 3   LLLVEDDNHVAGALSAILSRHGFQVTHARSGEEALKALLPAGGPPFGVVLLDLGLPDQDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IRA + VP+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR +
Sbjct: 63  YEVCGKIRARTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARRNQ 122

Query: 121 VSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +      P         ++V    R   V GEV  L R+E  +L  L+   G    + 
Sbjct: 123 PGDAEGAATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVFRRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++           +E H++ LR KLR       +++ R +GY +
Sbjct: 183 QIISEVW-RTSWEGTGRTLEVHVASLRSKLRRPA---LIETVRGVGYRL 227


>gi|239939366|ref|ZP_04691303.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239985844|ref|ZP_04706508.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291442799|ref|ZP_06582189.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
 gi|291345746|gb|EFE72650.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
          Length = 219

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G                     D+  ++  L   G+  L
Sbjct: 4   ILIAEDEVRIASFVEKGLRRSGYVTRVVADGVAAYEHARGRDFDLLILDLGL--PGDDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++    +   +   +SG DD + KP    E+LARV    RR +
Sbjct: 62  AVLRKLRKARITLPVVILTARDGVSDIVAGLESGADDYMVKPFAFDELLARVRLRLRREE 121

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N         +    R  +    V  L  RE  + E LM N  + + + Q+ S ++G
Sbjct: 122 PPENFLLRVGDLLLDLRTRRAQAGERVTDLSAREFALAEILMRNPDRVLTREQLLSQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     N+V+ +I  LR+K+    G + V++ R +GY +
Sbjct: 182 -FDYDPGSNIVDVYIRYLRRKI----GAERVETVRGVGYRL 217


>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 231

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD A V +         G                +        ++  + G  G  V
Sbjct: 7   ILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVGV 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
           +   R I   ++VP+  +S   S+   +   ++G DD + KP         + A +    
Sbjct: 67  VTALRAIG--NEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTT 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     ++    GP+ V   G    + G    L +RE  +L  L  + G  +++ Q+   
Sbjct: 125 RATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D A + NVV+  ++ LRKKL        + + R +G+ +
Sbjct: 185 VWG-YDFAADTNVVDVFVTYLRKKLEVDGAPRVIHTVRGVGFVL 227


>gi|78067449|ref|YP_370218.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968194|gb|ABB09574.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 273

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L    G  V
Sbjct: 34  ILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQTFDLLILDLGLPKMPGLDV 93

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 94  LKRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 151

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 152 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 212 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLEK 251


>gi|77464719|ref|YP_354223.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126463559|ref|YP_001044673.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77389137|gb|ABA80322.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126105223|gb|ABN77901.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 232

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++      GE  +
Sbjct: 8   LLVVDDDERIRSLLQKFLIRNGFLISTARDAAQARRLLDGLEFDMIVLDVM--MPGEDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
            L R +R     P++ ++        ++  ++G DD + KP   +E              
Sbjct: 66  SLTRSLREDLATPILLLTARGETSHRIEGLEAGADDYLAKPFEPKELLLRINAILRRVPS 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R ++       G +R   +  +     E   L   E  ++    A  G+ V++ ++   
Sbjct: 126 ARPELGPKVLHLGDVRYDLERGELWRGTEPVRLTATEAALMRIFAAQPGEAVSREKLVGD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + G  D   +E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 L-GRDDSQSQERAVDVQITRLRRKIEVDPRQPRYLQTVRGSGYML 229


>gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
 gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E       + + D+  ++          +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAI-NDKIDLILLDVM--MPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   IR++   ++   + ++  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKNTKNSDCIEYQEIRLYPGKQEAYCEQQLLDLTATEFALLTHFVQNPGQVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|91782863|ref|YP_558069.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91686817|gb|ABE30017.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 227

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEIKTGTYLRKGLTEAGFIVDWVADGVTGQHRALTEDYDLIILDVML--PGQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            + + +R      ++ ++    +   +   + G DD + KP    E+LARV +I  R   
Sbjct: 61  TVLKNLRRTHSTSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    R    QG+   L  +E  +L  LM  +G+ + ++ I S ++ +
Sbjct: 121 RDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPRLIHTVRGMGYVLEE 221


>gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +       D+   +           +   A  D+  ++  L    +  L
Sbjct: 4   ILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIML--PDKNGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  +   P++ ++   + +      D G DD + KP    E+ AR+ A+ RR K
Sbjct: 62  EVCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRGK 121

Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +++  +   I          D +  E       L   E R+L  L+ N+G+ +++  + 
Sbjct: 122 SNDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + + +  +E NVV+ +I+ LRKK+        + +   +GY +
Sbjct: 182 ESAWDI-NFNMETNVVDVYINYLRKKMDTDANNKLIHTVVGMGYVL 226


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +                R D   ++  L       L 
Sbjct: 68  LVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVML--PDMDGLT 125

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           +  R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR    +     
Sbjct: 126 VLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 185

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +    G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 186 AAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 245

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 246 WS-YDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 286


>gi|229589367|ref|YP_002871486.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361233|emb|CAY48097.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I      G+   G            +   DV  ++  L   GE  L 
Sbjct: 13  LIVDDDVPIRELLIDYLARFGILATGVTDGTTMRQAMQAETFDVVVLDLML--PGEDGLS 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD ++KP   RE++AR+  I RR++  
Sbjct: 71  LCRWLRSESDIPILMLTARCEPTDRIIGLELGADDYMSKPFEPRELVARIQTILRRVRDD 130

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                               +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 131 RTEQRANIRFDNWRLNSVLRQLVADDGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 191 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKAPQLIKTVRGEGYLFD 234


>gi|149184989|ref|ZP_01863306.1| DNA-binding response regulator [Erythrobacter sp. SD-21]
 gi|148831100|gb|EDL49534.1| DNA-binding response regulator [Erythrobacter sp. SD-21]
          Length = 268

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +++         G  +    S      L  S   D+  ++      GE  L
Sbjct: 33  LVLVDDEPSLREPLAEYLTGQGFVVREAESAAAARSLLGSEAPDLVLLDIM--MPGEDGL 90

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +     +P+I ++        +   + G DD V KP   RE++AR+ ++ RR   
Sbjct: 91  SLCRHLVETRHLPVILLTAKGEAMDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRADR 150

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174
           +           F       ++  +        P+   E R+L     +  + + + ++ 
Sbjct: 151 APEAPAEDMAYRFEGWTLDPLKRRLTDPEGALVPISTAEFRMLRAFCDHPRQVLDRDRLL 210

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             + G   +  +   V++ +S+LR+K+         + + R  GY  
Sbjct: 211 DMVQGREAQLFD-RAVDNQVSRLRRKIEADSRDPHFIQTVRGGGYRF 256


>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
 gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
          Length = 223

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  S   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R   + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGL--PKADGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + +  R    + P+I ++        +D FD+G DD V KP H  E++ARV AI  R  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|163867364|ref|YP_001608558.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
 gi|161017005|emb|CAK00563.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
          Length = 240

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVRAILRRSNA 128

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             + G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLSTGTASTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYS-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +           L  + + D   +   +I      L
Sbjct: 4   ILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWEL--TQKNDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +          G+V  L  +E R+LEY + N+G  +++  +   +
Sbjct: 122 GNESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-DFDTNTNVVDVYVNYLRTKIDKDFEPKLIHTVVGVGYMME 224


>gi|126736177|ref|ZP_01751920.1| DNA-binding response regulator PetR [Roseobacter sp. CCS2]
 gi|126714343|gb|EBA11211.1| DNA-binding response regulator PetR [Roseobacter sp. CCS2]
          Length = 233

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +           + S    D+  ++      GE  +
Sbjct: 8   LLIVDDDERIRGLLQKFLMRSGFLVSTARDAAHARRILSGLEFDLIVLDVM--MPGEDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
            L R +R     P++ ++        +   ++G DD + KP            + R    
Sbjct: 66  ALCRDLRKTITTPIMLLTAKGGTDDRITGLEAGADDYLAKPFEPKELLLRINAILRRMPA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V       GP+R   +  +     ++  L   E +++       G+ V + ++  
Sbjct: 126 TEPAVVLPKVLNMGPVRYDIERGEMWHGEKLVRLTATESQLMRIFSGCPGEAVTRMRLVE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +        +E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 EL-SRSGGQTQERAVDVQITRLRRKIEVDPKQPRYLQTVRGAGYML 230


>gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +           +  S    +  ++  L        
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +          +  D R  +V G+   +   E  IL  L++N+G  +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|299133554|ref|ZP_07026748.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591390|gb|EFI51591.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D     +     F + G   E     E    L  S   DV  ++  L    G  V
Sbjct: 16  LLIIEDDRESAEYLAKAFREVGHVAELAGDGEEGLALAQSGDYDVLVVDRMLPKRDGLSV 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R        P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  IGTLRE--KGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         +  D    +V+     +    RE R+LEYLM + G+ V +T +   ++
Sbjct: 134 GPSEETSYRVGDLELDRLSHQVRRGTTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 194 D-YHFDPQTNVIDVHISRLRSKIDKGQERPLLHTIRGAGYMI 234


>gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
          Length = 224

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  ++G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A    +          +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|260220645|emb|CBA28392.1| Transcriptional regulatory protein ompR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 274

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +            +      +      +    ++  ++  L   G   L
Sbjct: 35  ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVML--PGTDGL 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R IR  SQ+P+I ++   +    +   ++G DD + KP   R     I   +     
Sbjct: 93  TLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQG 152

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL------PRRERRILEYLMANRGKRVAKT 171
             +V+ N A +  +         E +  V P          E R+L   +    +  ++ 
Sbjct: 153 AKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRD 212

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           Q+     G   +A E   ++  +S+LR+KL  +      + + R  GY  + 
Sbjct: 213 QLMEQARGRAMDAFE-RSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMFNV 263


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A + +   A   + G  ++  ++ +   +       DV  ++  L   G+  L
Sbjct: 3   ILYIEDEAKIANFVCAGLKEQGFVVDYIDNGDEGYYRAMENEYDVIVLDIML--PGKDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R   +  P+I ++    L   L+  + G DD ++KP    E++AR+ A+ RR+ 
Sbjct: 61  AILKSLRRAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPFFVEELIARIHAVIRRIS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R+     ++  L  RE  +LEYLM + G+   +TQI   ++G
Sbjct: 121 GERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+  + +LRKK+    G   +DS R +GY  
Sbjct: 181 -YDFNPNTNLVDVCVQRLRKKIEKVAGDSWIDSVRSVGYLF 220


>gi|168186231|ref|ZP_02620866.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295719|gb|EDS77852.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G       +G ++    + E    + S  + D+  ++  L    +   
Sbjct: 4   ILIVEDDKLLNKGVKFALEIEGYTIVDTYNYEEGYKVFSKNKVDLVLLDINL--PDKSGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +S++P+I I+   +    +D F  G DD ++KP     +  R+ A+ RR  V
Sbjct: 62  KLCIEIRKNSEIPIIFITAKDTESDIIDGFKLGCDDYISKPFSIEVLKQRIKAVLRRTTV 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             NR      I +  +  D +  G    L  +E R+LE L+ N G+ + +  I   ++  
Sbjct: 122 VENRLFVYEDITIDFNKMDVKKNGITIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
               V+EN +  +I +LRKK+ +       + +   +GY
Sbjct: 182 DGNFVDENALNVNIRRLRKKIEDDSKNPKYIITVFSIGY 220


>gi|90414946|ref|ZP_01222909.1| putative transcriptional regulator CpxR [Photobacterium profundum
           3TCK]
 gi|90323946|gb|EAS40544.1| putative transcriptional regulator CpxR [Photobacterium profundum
           3TCK]
          Length = 222

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++ +    +  ++G  +   +  E       +   D+  ++  L       L
Sbjct: 4   ILVVDDDVMLCELLTEVLSEEGYDVHCLHDGESALTYMQAHSVDLVLLDVML--PNIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I      P++ ++      + LD   +G D  V KP    E+LAR+ +I RR+ +
Sbjct: 62  QVARRICQRFATPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRRVGL 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R                +Q    PL   E  +LEYL+ + G  V+K ++   +    
Sbjct: 122 ERQRQGLNNCTAD-----LSIQFSRLPLTGTESELLEYLIKHDGIVVSKAELQKEVL-KK 175

Query: 182 DEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220
           D    +  ++ HIS +R+K L++ L    + + R  GYS 
Sbjct: 176 DLCPFDRNLDMHISNIRRKMLQSGLSKQHIKTVRGKGYSF 215


>gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  +       L
Sbjct: 4   ILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMI--PQINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    +R  V
Sbjct: 62  EVLRRIRKTSDLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRTV 121

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              R                       +   L  RE  +L+ L+ N+   + +  +   +
Sbjct: 122 IEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYIGETNVIDVYIRFLRTKIDDAFKTKIITTVRGVGYVI 223


>gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 258

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +         +G  +           + +  R D+  ++  L    E  L
Sbjct: 17  ILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLML--PDEDGL 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 75  SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + N +E      FS                      L   E  +L       G+ +++  
Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +     G    + +   ++  +S++R+K+         + + R  GY  
Sbjct: 195 LLELTQGPNCGSFD-RSIDVLVSRIRRKIEADPADALMIKTVRSGGYMF 242


>gi|320008084|gb|ADW02934.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 235

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARRYEVDAAPDGATALQLAAARHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      ET    V    +    +G    L   E  +LE L+ N G+ V++ Q+  
Sbjct: 123 GQDGGDDLVIVETEGFTVDLAAKKVHREGRDVRLTPTEWHLLEVLVRNAGRLVSQKQLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 EVWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 228


>gi|256374901|ref|YP_003098561.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255919204|gb|ACU34715.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 241

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+         +G+ +      +       +   DV  ++  L   G     
Sbjct: 8   LVVDDEVGVRRALERGLAAEGMEVVSAADGDTALRAALTGAFDVVLLDIML--PGLSGYR 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + + +RA   + P++ +S         D  D G D  + KP     ++A+V A       
Sbjct: 66  VLQRMRAEGVRTPVLMVSAKDGEVDQADGLDLGADGYLVKPFSFVVLVAQVRALLRRGSA 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++  R   G + V    R+    G   PL  RE  +L+ L    G  V K ++   ++G
Sbjct: 126 ELARRRLRLGELVVDRAVREVSWAGVPVPLSPREYAVLDVLAGRAGSVVTKDELLRTVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++A   N VE ++  LR+KL      + V + R  GY
Sbjct: 186 -DEQAATRNAVEVYVGYLRRKLEAVGAGEVVRTVRGHGY 223


>gi|237797220|ref|ZP_04585681.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020070|gb|EGI00127.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 230

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    +        +  + D+  ++  L        
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGMEGLTQAALGKPDLLVLDLGL--PDMDGQ 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++    R  S VP++ +S   S    +   D+G +D V KP   +E LARV         
Sbjct: 65  QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+
Sbjct: 125 GEKPDAALRFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLSRHPGRVITQQQLLKDIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G      + + +   +  LR+KL +       + ++  +GY +
Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
 gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
          Length = 235

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G  +                  D+  ++          L
Sbjct: 6   ILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINNIDLILLDVM--MPRLNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R + ++P+I +S        +     G DD V KP +  E++AR+ A  RR + 
Sbjct: 64  SALMKLRENYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRRYRA 123

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A                   R   V G+   L   E +ILE+LM + G+  +  QI
Sbjct: 124 WGGAAPEADSDTVVNGGLVLDKKRRIILVDGKEVRLTATEYKILEFLMGHLGQVFSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++        EN V  HI  +R+K+  +      V     +GY ++ 
Sbjct: 184 YENVWKESANYTVENTVMVHIRHIREKIEIDTKKPRYVKVVWGIGYKMEK 233


>gi|116628066|ref|YP_820685.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101343|gb|ABJ66489.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278662|gb|ADQ63319.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus thermophilus ND03]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +       +           L       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++
Sbjct: 122 FGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      D +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGY 220


>gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218]
          Length = 240

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V           G  +   N+       Q+S   D+  ++           
Sbjct: 4   ILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIE-QASKSPDLMLLDVN--MPEADGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R +R H   P++ ++     +  +  F SG DD + KP    E    +A       R
Sbjct: 61  EVCRKVRDHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIRRDHR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G   V    +    + E   L ++E  I+E L  N G+   K +I+  I+
Sbjct: 121 STAASNVRFFGDTVVNYTEKTVSCKDEQLDLTKKEYGIIELLSLNAGQVFDKERIYEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   + +V+  HI ++R KL        + +   +GY 
Sbjct: 181 G-YDAEGDSSVIAEHIRRIRAKLGKYSEDSHLGTVWGMGYK 220


>gi|297588265|ref|ZP_06946908.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573638|gb|EFH92359.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 222

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I    ++G    GF      +    S+  D+  ++  L G  G  
Sbjct: 1   MICCVEDDKSIRELIIYALNNEGYEAMGFGDYNEFKSTLYSSSIDLIILDIMLPGKSGLD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +L+  R       +P++ ++   +    +   DSG DD + KP    E+LARV A     
Sbjct: 61  ILKEIRNNEKTKSIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  + ++     I +  D R   V GE   L  +E  +L YL++N GK + +  I + I
Sbjct: 121 SLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G FD   E   V+ HI+ LR+KL+N      + + R LGY 
Sbjct: 181 WG-FDFEGESRTVDVHIATLRQKLKNASS--IIKTIRNLGYK 219


>gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +  I    + G ++   +S E    L  +   D+  ++  L   G   +
Sbjct: 3   ILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIML--PGLDGM 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIY 116
           +L +II    +  P++ +S   S    +   D G DD ++KP H  E+++R         
Sbjct: 61  QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +     G I + +D        +       E ++  +LM N+ K +++TQI   
Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ D     NVV+ +IS +R K+        + + +  GY I
Sbjct: 181 VWGI-DFDNTTNVVDVYISYIRNKIDE-TEQKIIHTVKGTGYLI 222


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G     G +G +++             S   D++ ++  L       L
Sbjct: 3   LLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGL--PRMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R + S +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                         +   +     G+   L  +E ++L  L++  G+ + +  +   +YG
Sbjct: 121 GRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPGRVMTRDHLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++E  E N +E HI  LRKK       D + + R +GY ++ 
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSTDLIRTIRGVGYLVEE 218


>gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont]
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVIDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGSREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
          Length = 228

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G  +             +  + D+   +           
Sbjct: 5   ILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIM--MPNMDGY 62

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +     + A    P + I+   S    +     G DD ++KP   RE    +  +     
Sbjct: 63  DFIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNRIY 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +    R  ++  +   L  +   +L  L  +     +KT+++  +
Sbjct: 123 GKTNESQCLVIGDLVIDQSTRVVKIANQNLNLTNKAFDLLWILANHSNHVFSKTELYEQV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +G      + N +  HI  LR  L          + +   LGY ++
Sbjct: 183 WGEEYLD-DTNTLNVHIHSLRNDLAKYSTDQTPTIKTVWGLGYKLE 227


>gi|307545687|ref|YP_003898166.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217711|emb|CBV42981.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 241

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++D         G         E    L ++ R D+  ++  L   G+   
Sbjct: 8   LVVVDDDPEIRDLLADYLTRHGYRALMAEDAEALRALLATERPDLLVVDLML--PGDDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S+VP+I ++  P     +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 66  AICREVRRDSEVPIIMLTASPDETDRILGLELGADDYLGKPFNPRELLARVKAVLRRCRP 125

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + A +G  R+ + G            + +G    L   +  +L+  + +  + +++  
Sbjct: 126 RGDSAGSGMARIVAFGDWRLDRVTRELIDERGMRSALSGADFSLLQVFLEHAEQVLSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +F    G       +  ++ H+ +LR++L  +      + + R  GY +
Sbjct: 186 LFDLTRGRP-APPLDRSIDVHVCRLRQRLGEDAQHSQLIRTVRGTGYVL 233


>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
 gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRYK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|296130228|ref|YP_003637478.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296022043|gb|ADG75279.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +      G +G  +    + +      +SA  D+  ++  L       L+
Sbjct: 5   LLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGAASA--DLVVLDLGL--PDMDGLD 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IR+     P++ ++        +   D+G DD V KP    E    +  +      
Sbjct: 61  VARAIRSQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +RV               L  +E  +L  L+A  G  V++  +   ++
Sbjct: 121 DPADEDELHAQNVRVDVAAHRAFQGERELHLTAKEFDLLRVLVAAAGTVVSRETLMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D       ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 G-SDPTGSTKTLDMHVSWLRRKLGDDANAPRYISTVRGMGFRFE 223


>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 243

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 85/224 (37%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G            +    +   D   ++  L   G+  L
Sbjct: 7   ILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDAVLPDAILLDWML--PGQSGL 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116
            L R  R       +P++ ++        +   D+G DD + KP   +E+    R     
Sbjct: 65  ALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +  N+    G + + +       Q +   L   E ++L YLM +  +  +++ +   
Sbjct: 125 RAPESVNDSVTVGALVLDAGTHRISFQNQELKLGPTEFKLLHYLMKHAERVHSRSTLLDK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 VWGDH-VFIEERTVDVHVKRLREALGAAG--TMVETVRGAGYRL 225


>gi|154246499|ref|YP_001417457.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160584|gb|ABS67800.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    +             D+  ++      GE  L
Sbjct: 20  LLVVDDDNRIRTLLSRFLTEHGYRVTTAANAAEARGRLDGLAFDLLVLDVM--MPGESGL 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R  S VP++ ++        +   ++GVDD + KP   RE+L R+ +I +R   
Sbjct: 78  DLARDLRRSSAVPILMLTARSETSDRITGLEAGVDDYLAKPFEPRELLLRIGSILKRALP 137

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G      +  +     E+  +  RER +L  L    G+ V +  +    
Sbjct: 138 PAQKAIESVRFGEFAFHLERGELTRNTEIVRITERERDMLRALAEAPGETVPRLALA--- 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 A  E  V+  +++LR+KL  +      + + R +GY +
Sbjct: 195 ---GGGAASERAVDVQVNRLRRKLERDPANPVFLQTVRGIGYRL 235


>gi|331088794|ref|ZP_08337704.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407317|gb|EGG86820.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D  ++  G       D  ++                + D+  ++  L       L
Sbjct: 9   IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQKYDLFLLDINL--PDGNGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S+ P++ ++   + +  L+ F  G DD ++KP     +  +V A+ +R  +
Sbjct: 67  EFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRTGI 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  +     ++G+   L   E ++L YLM NRG+ V K  +   ++ + 
Sbjct: 127 GKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWDID 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V++N V  +I +LR+KL ++   + + +   +GY+ 
Sbjct: 187 GNFVDDNTVRVNIKRLRQKLHDE-KQEYIVTVFGMGYTF 224


>gi|310779378|ref|YP_003967711.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748701|gb|ADO83363.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 230

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   + +S     + +  + L  S   D+  ++  L        
Sbjct: 6   ILIVDDDIKICNLIKEVLEPENISTTVATTGKEAQSLLISKTFDLIILDIMLE--DTDGF 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R I+      P+I ++        +  F  G DD + KP     ++ARV A  RR  
Sbjct: 64  QLMRNIQVEKIDTPIIFLTGKQQDYDKILAFGMGADDYITKPFSVSVLIARVKAHLRRGD 123

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                          P  +  D       G+   L  +E +I+++ M N      K Q++
Sbjct: 124 RVKELQLSSKKLVKEPFILNLDTYQLFKNGKEIFLSAKEIKIMKFFMENPNIIFTKDQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+   D  ++ N V  +I  LRKK+ +       + +   +GY  
Sbjct: 184 EKIWN--DVFIDNNSVRVYILNLRKKIEDNPQKPKYLKTAWGIGYKF 228


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +           L  + + D   +   +I      L
Sbjct: 4   ILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWEL--TQKNDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +          G+V  L  +E R+LEY + N+G  +++  +   +
Sbjct: 122 GNESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-DFDTNTNVVDVYVNYLRTKIDKDFEPKLIRTVVGVGYMME 224


>gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +          +  ++   +       L      DV  ++  L   G   + 
Sbjct: 31  LLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVML--PGLDGIA 88

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR+  + P+I ++   S+   +   DSG DD + KP    E+LAR+  ++RR +  
Sbjct: 89  VCQKIRSVKKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQ 148

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   T           +GR      +   L +RE  +L   M N  + + +  +   ++
Sbjct: 149 ENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVW 208

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F+ AVE NVV+ ++  LR K+        + + R +GY +
Sbjct: 209 G-FEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVM 249


>gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 224

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +  +       ++G +++     +      S+   D+  ++  L   G   +
Sbjct: 4   ILVVEDDKMTGNYVAEGLREEGHTVDLMTDGKDALLQASTTSYDILIVDRML--PGLDGV 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++    +   ++  ++G DD + KP    E+ ARVAA+ RR +
Sbjct: 62  SVVKTMRGTKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +          +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 122 GTQDEIVLRAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     + NVVE+HIS+LR K+      + + + R  GY I+ 
Sbjct: 182 DIS-FDPQTNVVETHISRLRAKVDKPYEVELIKTVRGAGYRIEE 224


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N+ E    L S+   D+  I   ++      +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELLSN---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E  + +R + + P++ ++        +   + G DD + KP   RE        +    +
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQS 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   +   +++  E   I+++   ++   QGE+  L   E  +L + + N G+ + K  +
Sbjct: 121 SANGKQGKNSDCIEYQDIQIYPGKQEAYCQGELMVLTTTEFALLSHFVQNPGQTLTKEAL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              + G    A +   ++ H+S LRKKL   K G   + + R  GY +
Sbjct: 181 SLDVLGKRLAAFD-RAIDMHVSNLRKKLPERKDGKSRIKTLRGRGYLL 227


>gi|317502228|ref|ZP_07960401.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896343|gb|EFV18441.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 221

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D  ++  G       D  ++                + D+  ++  L       L
Sbjct: 4   IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQKYDLFLLDINL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S+ P++ ++   + +  L+ F  G DD ++KP     +  +V A+ +R  +
Sbjct: 62  EFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRTGI 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  +     ++G+   L   E ++L YLM NRG+ V K  +   ++ + 
Sbjct: 122 GKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWDID 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V++N V  +I +LR+KL ++   + + +   +GY+ 
Sbjct: 182 GNFVDDNTVRVNIKRLRQKLHDE-KQEYIVTVFGMGYTF 219


>gi|312978124|ref|ZP_07789869.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
 gi|310895099|gb|EFQ44168.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   ++   +         + GF          +    D+  ++  L    G  +
Sbjct: 4   IWCVEDDESIRKIEMYTLESMNFKVRGFEDGTTFVKALAEKHPDLVILDLMLPDEDGSDI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L+  R   +  ++P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LKKLRGNSSTEELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++ E   I++     +  V G+   L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 HKKEDKIEKDGIKILLKRHEVYVDGQEIELTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 E   V+ H+  LR+ L        +++ R +GY 
Sbjct: 183 ETGFYGETRTVDVHVRTLRQTLSEAGSH--IETVRGVGYR 220


>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D              DG  +              S   D+  ++          ++
Sbjct: 9   LVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIM--MPKLDGMD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R++R+ SQVP++ ++      T L     G DD + KP   RE+ ARV       R  
Sbjct: 67  VCRVLRSDSQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRRSRPE 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + V +      V GE   +  RE  +L  L A  G+  ++  I    +G
Sbjct: 127 SGPPTVFQVGRLTVDTGRVRVSVDGEPVSVTAREFAVLAALAAEPGRVFSRLDIVHRAFG 186

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            FD  V    V++HI+ LR+K+  +      + +    GY++
Sbjct: 187 -FDSHVSPRTVDAHIANLRRKIEPDPAHPVQLLTVYGHGYTL 227


>gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 242

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +         + L ++   D+  ++  L    G + 
Sbjct: 5   ILIVEDELAIQELIALNLKKAGHMVLCAGDATHAKLLINNVLPDLVLLDWMLPDITGLEF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R       +P+I ++        +   ++G DD + KP   RE+LAR+ A+ RR  
Sbjct: 65  ARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVLRRRL 124

Query: 121 VSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +           +    RV         +     L   E R+L +LMA + +   + 
Sbjct: 125 PEMSDEIIDIGGLKLDPTTHRVHVYSEYDSAKLSEIILGPTEFRLLHFLMAYKERVHTRA 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++G     +E+  V+ HI +LRK L      + V + R  GY  
Sbjct: 185 QLLDRVWGDH-VFIEDRTVDVHIRRLRKILETVGKENLVQTVRGTGYRF 232


>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +  S++          +  +   D+  ++  L        
Sbjct: 3   ILLVEDDRNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKS--SGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ + IR+ S VP+I  +   S    +   + G DD + KP          +  + R   
Sbjct: 61  EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   +   + +          G    L   E  I++ L  N+G+  +K Q++
Sbjct: 121 YSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQLY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           + I+        ENV+ +HI++LR KL + +   + + +   +GY ++ 
Sbjct: 181 NTIWKEP-YYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEE 228


>gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
 gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
          Length = 225

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D        +G   +     +    +  S    +  ++  L       L
Sbjct: 3   ILVIEDDQTTRDFVTKALEQEGFITDSTEDGKEGLMMAISCDYQLIILDRML--PNLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++   IRA     P++ +S   S+   ++   +G DD + KP    E    +  +    R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++N  +   + +    +   +   + PL  +E  +L YL  N  + V++ ++F A 
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+KLRKKL N    D +++ R  GY +
Sbjct: 181 WD-YHFDPKTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGYVL 222


>gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72]
 gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72]
          Length = 248

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A +++       + G +++        +        D+  ++  L   GE  L 
Sbjct: 13  LLVDDDARLRELLSRYLQEQGFAVKAVVDAPMMDRALHREHFDLIVLDLML--PGEDGLA 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A + +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 71  ICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQPH 130

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +     G +RV    R     GE   L   E  +L+ L+ +  + +++ ++
Sbjct: 131 SLPGAPTPEDEIVVFGRVRVNLGTRALTRDGEEIQLTTGEFSLLKVLLQHPRQPLSRDKL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                G  +  V +  ++  +S+LRK + +       + +    GY  
Sbjct: 191 MELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 237


>gi|332185498|ref|ZP_08387246.1| response regulator [Sphingomonas sp. S17]
 gi|332014476|gb|EGI56533.1| response regulator [Sphingomonas sp. S17]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + +   A    +G              L  + + D+  ++  +         
Sbjct: 6   LIAEDDRDIAEIIRAYLEREGFRTVHAGDGRTALDLHLALKPDILLLDISMPL--IDGWG 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P++  +        L     G DD V KP +  E++ARV A+ RR    
Sbjct: 64  VLSEVRRRGHTPVVVTTALDQDIDKLQALRIGADDYVVKPFNPVEVVARVKAVLRRTGGE 123

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ + +       +     L   E R+L ++     +  +++++  A   L
Sbjct: 124 GANGVLRVGPVEIDTTAHMVRTERGEVALTLTEFRLLAHMARTPSRVFSRSELLDAC--L 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +  V+SH+SKLR+KL      D  +  R +GY +
Sbjct: 182 PGSDALDRTVDSHVSKLRRKLEQAGVPDMPEGVRGVGYRL 221


>gi|253582707|ref|ZP_04859928.1| DNA-binding response regulator [Fusobacterium varium ATCC 27725]
 gi|251835577|gb|EES64117.1| DNA-binding response regulator [Fusobacterium varium ATCC 27725]
          Length = 215

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
           M ++++D   ++    A+  ++ + +E   + E     +Q   + ++  ++  L      
Sbjct: 1   MILIVEDTEHIRKLVKAILKNENIDIEEAVTGEEALNKIQQGNKYELILMDIML--PKID 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +   + IR  ++ P+I ++     ++ +  +++G D  + KP          + + R +
Sbjct: 59  GINTTKKIREITETPIIFLTALSDEKSQITAYEAGADGYITKP---FSKEILKSIVIRYV 115

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G + +        +  +   L  +ER IL YL  N G    + QI S ++G
Sbjct: 116 FKSGIVKKYGDLEINKKSGKVLMNKKEIYLTIKERDILFYLEENIGIVKTREQIISGVWG 175

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    +  V+ H+++LR+KL N      + + + +GY  + 
Sbjct: 176 -YDFTGTDRTVDKHLTRLREKLGNCS--KYIKTVKAIGYKFEE 215


>gi|228924486|ref|ZP_04087689.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835175|gb|EEM80613.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 12/212 (5%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
               +   +   ++ E           D++ ++           +L + IR   Q P++ 
Sbjct: 21  FLEMENFFVVEASNGEVALKCLEENHIDLAIVDIM--MPKMDGYQLIKKIRETLQFPILI 78

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--------RAETG 129
           +S        +     G DD + KP    EI+ARV A  RR    N+        +   G
Sbjct: 79  LSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYEFNDKAVEGKEKQIHMG 138

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +           E   L   E +IL   M   G+   K QIF +++  +    ++N 
Sbjct: 139 DLVLDHHSCILYKSSESISLSATEYKILALFMEEPGRIFTKKQIFESVWSDY-YCADDNT 197

Query: 190 VESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  HIS+LR+KL +       + + R LGY  
Sbjct: 198 IMVHISRLREKLEDSPKNPVYIKTIRGLGYRF 229


>gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 251

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L       L
Sbjct: 29  ILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRML--PRRDGL 86

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 147 TPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 207 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|162449627|ref|YP_001611994.1| two component system transcriptional regulatory protein [Sorangium
           cellulosum 'So ce 56']
 gi|161160209|emb|CAN91514.1| two component system transcriptional regulatory protein [Sorangium
           cellulosum 'So ce 56']
          Length = 234

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++    A+    G  L    +        ++   D+  ++  L       LE
Sbjct: 9   LLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGL--PDMDGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R  S VP+I +S     Q  +D  D G DD + KP          R  L   A+ 
Sbjct: 67  VTRRLREWSAVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALRHAASA 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R      +R     I V    R     GE   L   E ++L  L+ + GK +   Q+  
Sbjct: 127 ARGATAEGHRFAVQDIEVDLARRVVLRAGEEVHLTPIEYKLLTTLIRHAGKVLTHRQLLG 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
            ++G    A + + +  ++++LR KL        +  ++  +GY +
Sbjct: 187 EVWG-PAYAGQAHYLRVYMAQLRHKLERDPARPLILITEPGVGYRL 231


>gi|225155322|ref|ZP_03723815.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803929|gb|EEG22159.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 242

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +     +G   +   +              +  ++  L        
Sbjct: 5   ILIIEDEPAIADTLLYSLASEGFRPQWRATGREGREALERETFALVILDVGL--PDISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108
            L + IR  S VP++ ++   +    +   + G DD V KP   RE+             
Sbjct: 63  ALCQEIRRCSSVPILFLTARNNEIDRVVGLEMGGDDYVAKPFSPREVAARVRAILRRGPA 122

Query: 109 ----LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                A           +          V               L R E R+ + L++  
Sbjct: 123 VTNANADAGVTVNTNASAKPHDNGQRFTVDDTRFQIRFLDTPLDLTRIEFRLFKVLLSQP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           G+  ++ Q+ +A +   + +++   V++H+  +R KLR         + + R LGYS+
Sbjct: 183 GRVFSREQLLTAAWDEPEASLD-RTVDAHVKTIRAKLRAVTNEADPIIQTHRGLGYSL 239


>gi|104780165|ref|YP_606663.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95109152|emb|CAK13849.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVML--PGLDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A   R    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSAIH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPLQIQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|56459431|ref|YP_154712.1| osmolarity response regulator [Idiomarina loihiensis L2TR]
 gi|56178441|gb|AAV81163.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis
           L2TR]
          Length = 241

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        +    +      E  + L +    ++  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLERYLTEQNFQVRVAQDSEQMDRLLTRENFNLLVLDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +R+     P+I ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 66  SICKRLRSQGNNLPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARVRAVLRRRG 125

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G  R+    R+        PL   E  +L+ L+ N  + +++ +
Sbjct: 126 TEAPGAPSQEDQEITFGEFRLNLGTREMFRGDTPMPLTSGEFAVLKALVNNARQPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMHLARGR-DYSALERSIDVQVSRLRRMLEVDPTKPRYIQTVWGLGYVF 233


>gi|17548535|ref|NP_521875.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430783|emb|CAD17465.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 256

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 74/229 (32%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G+             L  S + D+  ++          
Sbjct: 28  LILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVLLDV--QMPHVDG 85

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            +    IR     P+I ++        L     G DD V KP +  E           + 
Sbjct: 86  WKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSM 145

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                R  +V         +           Q     L   E ++L  L     +  ++ 
Sbjct: 146 SGTGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHALALTLTEFKLLAQLARAPKRVFSRA 205

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +A   L +    E  V+SHISKLRKKL +          R +GY +
Sbjct: 206 ELLAAC--LPEGDTLERTVDSHISKLRKKLEDLGVNGMPVGVRGVGYRL 252


>gi|312870288|ref|ZP_07730416.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
 gi|311094172|gb|EFQ52488.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
          Length = 238

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +             E        E   ++A +    I   L    +  +
Sbjct: 3   ILMIEDNHSVCEMMAMFLKKQNWQYEFAYDGVEAEEKFNAAPDKWDVILLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR  S   PLI ++   +    +   + G DD V KP     ++AR+ A+YRR +
Sbjct: 63  QVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRRSQ 122

Query: 121 -------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                           +                    ++  L  +E  +L+ L +   + 
Sbjct: 123 LAKQPAEQPGTADRDFDVKTKNFRMNTKTREVFLYDQQIDDLTPKEFDLLKTLASKPRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + Q+   ++  ++   +E  V++HI KLR+KL + LG   + +   +GY  D
Sbjct: 183 FTREQLLQLVWD-YEYYGDERTVDAHIKKLRQKLED-LGPQVIKTVWGVGYKFD 234


>gi|303242550|ref|ZP_07329028.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302589912|gb|EFL59682.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 220

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  ++    + E    L       +  ++  L   G    
Sbjct: 4   ILIVEDNKEIAGLLCDFLRAESYTVSVCENGEKALQLYEKYGARLVVLDIML--PGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S  P+I +S        L+    G DD   +  +  +IL    +   + + 
Sbjct: 62  AVCSKIRKTSNTPIIIVSAKSEKYDKLNGLILGADDY-IEKPYDIDILLAKISGIFKRRY 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +    G +R+    +   +      +  +E  +L  L+ N+GK + K  IF+ I+G  
Sbjct: 121 ALDEVIEGNLRLNRAEKAAYLDDVPLEMTAKEFELLLLLVENKGKTLKKEYIFNQIWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   E+  +  HI  LR+K+  N      + +   +GY  
Sbjct: 180 DSFSEQQTLTVHIKWLRQKIEHNPKEPQHIQTVWGVGYKF 219


>gi|184154873|ref|YP_001843213.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260663097|ref|ZP_05863989.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183226217|dbj|BAG26733.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260552289|gb|EEX25340.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +          E      ++  +D   +   L    +  +
Sbjct: 3   ILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113
           ++   IR  S   P+I ++   S    +   + G DD V KP     ++AR+        
Sbjct: 63  QVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRRVQ 122

Query: 114 -----AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                    ++    +   +                 +  L  +E  +L+ L +   +  
Sbjct: 123 LSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 TREQLLQLVWD-YEFYGDERTVDAHIKKLRQKIE-KVGPKVIQTVWGVGYKFD 233


>gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       +   +++  N  E   ++ +S   D+  ++  L        
Sbjct: 3   ILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPL--MDGF 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R   ++  ++P + ++   +++  +   D G DD + KP    E+ AR+ A I R  
Sbjct: 61  EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRRGK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     + +          GE   L  +E  +LE+ + N    + +TQI   ++ 
Sbjct: 121 VHYQTKLTVADLSLDLATHRLYRNGETIDLTNKEFALLEFFLRNLNIVLTRTQITEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NVV+  +++LR K+        + + + +GY +
Sbjct: 181 -YNFDSFTNVVDVFVNRLRNKIDKNRETKLIHTIKGVGYIM 220


>gi|86610276|ref|YP_479038.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558818|gb|ABD03775.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G  +           +  +    +  +   L+      L
Sbjct: 24  LLVVDDEDAIRETVALALEEQGYQVLQAADGRQALEMVHTVE-RLDLMILDLMLPSLNGL 82

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           +L R++ R  + +P++ ++   S    +   + G DD + KP   R       + +    
Sbjct: 83  DLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRQQ 142

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +F+      V+G       +E R+LE  M+N  +   + Q+   
Sbjct: 143 LAQASDATVLRYGDLCMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLER 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 203 IWG-SDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 246


>gi|316933148|ref|YP_004108130.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600862|gb|ADU43397.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +         +  ++         E   +  R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRALIAKYLRSNNCNVATAADGREMERWIADHRVDLVVLDVML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA+SQ+P+I ++        +   + G DD + KP + RE+LAR+ ++ RR   
Sbjct: 66  SLCRKIRANSQLPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRRQAS 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           +   +                               +   E  +L+ L    G+ +++  
Sbjct: 126 AVTASAAPGATTLGFLGWRMDCRRRELRNPDGALVAMTSAEFDLLQALCERAGRVLSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +    +G    A E   ++  IS++R+K+  +      + + R  GY  
Sbjct: 186 LLDLTHGRSVGAFE-RSIDVLISRIRRKIEPDPREATLIKTVRAGGYVF 233


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMI 238


>gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      +  +   D+  ++  L        
Sbjct: 3   ILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + +R A  QVP++ ++   S+   +   + G D  + KP    E+    R     R 
Sbjct: 61  HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +++ +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S I+
Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +     NV++  I +LR K+        + + R +GY++D
Sbjct: 181 DM-NFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGYTLD 222


>gi|116670431|ref|YP_831364.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610540|gb|ABK03264.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+          +G S+      +      +     +  ++  L         
Sbjct: 5   LVVDDDPLLLKVLKITLQANGYSVTTATDGKSALLAATQHPLRLIVLDLGL--PDIDGTT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R  + VP++ +S     +  ++  D+G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  VITELRRWNPVPILVLSARHGSEDKVEALDAGADDYITKPFGPDELLARLRALLRRASDH 122

Query: 123 NNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +        V         +G    L   E  ILE ++ N  K + + Q+ S ++G 
Sbjct: 123 SQDSVVTTGAFTVDLGKHRVTREGNDVRLTPTEWNILELMVRNPDKLITQRQLLSEVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                + N +  ++++LR+KL  K G      ++  +GY  
Sbjct: 182 PAYTTDSNYLRVYMAQLRRKLEPKPGTPRHFLTEPGVGYRF 222


>gi|293603700|ref|ZP_06686119.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817874|gb|EFF76936.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L      D+  ++  L        
Sbjct: 7   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVML--PDVDGW 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R A  QVP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 65  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 125 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 185 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 226


>gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +   ++   D+  ++  L       L
Sbjct: 3   ILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGL--PKLHGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R   S VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR  
Sbjct: 61  EVLKKLRGRGSSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
            S +           + GR   +   +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E +I +LRKK+    G   + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYIHRLRKKIEQ--GPIRIATVRGLGYCLEK 220


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          DG+++     L        +   D   ++  L       L+
Sbjct: 13  LLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGL--PDGNGLD 70

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
             R +R     VPL+ +S        +   + G DD + KP   RE++AR          
Sbjct: 71  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQR 130

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    ++         +   G+   +QG    L RRE ++L  L+   G+ +++  +  
Sbjct: 131 LQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLD 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +I+G  D    +  V++H+  LR KLR      D + + R +GYS+
Sbjct: 191 SIWGQ-DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235


>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D      G+ G + +  +              D+  ++  L G     +
Sbjct: 3   ILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGGGM 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           E+ R++R H S VP++ ++   SL+  ++  D+G DD + KP H    +    A + R  
Sbjct: 63  EVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRRAP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   + +    R     G   PL  +E  +LEYLM N G  V+ +Q+    + 
Sbjct: 123 RADAPVLEAAGVLLDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDHAWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     NVV+++I  LR KL      + ++++R  GY I
Sbjct: 183 T-NYQGVSNVVQTYIRYLRVKLAEPGLPEVIETRRGYGYLI 222


>gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 236

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +    + +    +      +++ ++          +
Sbjct: 5   ILVVEDEKGIREAIQIYLKNQGYRVFLAENGQEGLNIIKRETINLAVVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR + 
Sbjct: 63  TMTMEVRKDYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP--------------RRERRILEYLMANRGKR 167
                E     V  +     +                       +E  ILE LM + G+ 
Sbjct: 123 ILMLKEHAVSSVNREEEIYSIGALELNSTTKEVRVDNQIVKLRPKEFMILELLMKHAGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  QI+ A++   +EA+    V  HI KLR+K+  +      +     +GY I+ 
Sbjct: 183 FSAQQIYEAVWN--EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E                 DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLML--PELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R +R   + P+I ++   S+   +   D G DD + KP          R +L R+A  
Sbjct: 63  VARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 224

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKITRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|66767745|ref|YP_242507.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573077|gb|AAY48487.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 231

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  +     +G   E             +   D+  ++  L        E
Sbjct: 9   LVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGL--PDINGFE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R+ S+VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 67  VCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVA 126

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G   +  DG        + PL R E  +L  L+   G  +++TQ+    
Sbjct: 127 VAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRTQLMDRG 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           +    ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 187 WDASADSAD-RTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV 231


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIML--PDFDGLE 77

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           + R +R     VP++ ++   +++  +    +G DD V KP    E++AR    +     
Sbjct: 78  VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +  E G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 W-NYDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|255973028|ref|ZP_05423614.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976067|ref|ZP_05426653.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618840|ref|ZP_05475686.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256958749|ref|ZP_05562920.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962146|ref|ZP_05566317.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965344|ref|ZP_05569515.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257078778|ref|ZP_05573139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082778|ref|ZP_05577139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085479|ref|ZP_05579840.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086608|ref|ZP_05580969.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089665|ref|ZP_05584026.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415879|ref|ZP_05592873.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419081|ref|ZP_05596075.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|255964046|gb|EET96522.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255968939|gb|EET99561.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598367|gb|EEU17543.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256949245|gb|EEU65877.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952642|gb|EEU69274.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955840|gb|EEU72472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256986808|gb|EEU74110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990808|gb|EEU78110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993509|gb|EEU80811.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994638|gb|EEU81940.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998477|gb|EEU84997.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157707|gb|EEU87667.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160909|gb|EEU90869.1| DNA-binding response regulator [Enterococcus faecalis T11]
          Length = 242

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G      +  +       ++ E    I   L       +
Sbjct: 6   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMDGM 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 66  AVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAE 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKR 167
           V+    +T      +     +                       +E  +L  L     + 
Sbjct: 126 VAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQV 185

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 186 FSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 237


>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 232

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
 gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +K+        +G       +        ++ + D+  ++  L       +
Sbjct: 6   ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGL--PDMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           ++   +R  SQ+P+I IS     +  ++  D+G DD + KP    E+         R+  
Sbjct: 64  QVIAKVRTWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRRLQY 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    ++ +     G + +        + G    L   E ++L  L  + GK +  + I 
Sbjct: 124 LSASAEMESAVFTNGGLTIDFAAGCASLDGNELHLTPFEYKLLCLLARHVGKVLTHSFIT 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      +   +   ++ LRKK+  +      + +   +GY +
Sbjct: 184 KEVWGSS-WEGDVASLRVFMASLRKKIEADAAHPQYIQTHVGVGYRM 229


>gi|16263704|ref|NP_436497.1| transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524421|gb|AAK65909.1| Response regulator [Sinorhizobium meliloti 1021]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G  +    +         +A  DV  ++  L        
Sbjct: 6   ILVADDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTAAPDVVILDLGL--PDMDGK 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IRA SQVP+I +S        +   D G DD + KP    E+ AR+ A  R    
Sbjct: 64  DVVANIRAWSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRHRIQ 123

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R     G    L  +E  +L  L  + G+ V    + ++++
Sbjct: 124 MAGGQAQLSADGLSIDMVKRVVTRDGAALRLTPKEYDLLVMLAHHAGRVVTHRTLLTSVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           GL     + + +   I +LR K+  +      V ++  +GY  
Sbjct: 184 GLAHGE-DLHYLRVFIGQLRGKIERDPGNPKIVRTEPGVGYRF 225


>gi|93007149|ref|YP_581586.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394827|gb|ABE76102.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              S + D+  ++  L   G   L
Sbjct: 12  ILIVEDDERLAMLTQDYLVKNGLEVAIETDGNRAIRRIVSEQPDLVVLDVML--PGSDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H Q P++ ++        +   + G DD V KP   R +LAR       +  
Sbjct: 70  TVCREVRPHYQNPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    R E G + + + GR   +  E+      E  +L  L +N G+ +++  IF  
Sbjct: 130 APSEDVPQRLEFGELVIDNGGRSVNLGDELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 190 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238


>gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   N          +   D+  ++  L       +
Sbjct: 5   ILIIEDELKIARFLELELVHEGYDVVLENDGRSGCDKALAEEFDLLILDLML--PCISGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++    +   +   D+G +D + KP    E+LAR+  I +R   
Sbjct: 63  EVCRRIRRQSQVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARMRGILKRYGT 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N   ++       + +  D        E  PL ++E ++L YLM N G  + + +I   
Sbjct: 123 INVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLLITREKILEN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G+ D     NV + +I  LR K+ +K G   + + R +GY  +
Sbjct: 183 IWGI-DYMGLTNVTDVYIRYLRTKIDDKYGVKLIHTIRGMGYKFN 226


>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
 gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
 gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
 gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
 gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
 gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
 gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
 gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
 gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
 gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
          Length = 244

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +  +  + L +     +  ++  L    E  +
Sbjct: 12  ILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLML--PDEDGI 69

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + + +R  +S +P+I ++   S    +   ++G DD + KP + +E        +  + 
Sbjct: 70  AICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 129

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +           E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 130 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 190 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 237


>gi|257870747|ref|ZP_05650400.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
 gi|257804911|gb|EEV33733.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
          Length = 232

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +   N          + +  +  ++  L   G    E
Sbjct: 6   LIIEDDEDISMIEKDFLEMEGYEVHIVNDGCVGYHEALTEKYQLILLDVML--PGMDGHE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR    +P+I ++        L     G DD ++KP    E++ARV A   +    
Sbjct: 64  ICRNIRDKVDIPIIMVTAKSEELEKLRGLGIGADDYISKPFSPTELVARVKANIAQYNRI 123

Query: 123 NNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +T           IR+ S      V G       RE  +L +LM N     +K Q+
Sbjct: 124 KRGQQTETVSSEIELGGIRINSQTHRVYVDGIEVDCKHREYELLLFLMENPEIVFSKEQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  I+G+ +       V  HI++LR+K+  +      + +    GY  
Sbjct: 184 YEKIWGM-EALGNIRTVAVHINRLREKVEEDPTNPQYIQTVWGAGYRF 230


>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQNFTFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD + KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|254467591|ref|ZP_05081000.1| two-component response regulator [Rhodobacterales bacterium Y4I]
 gi|206684339|gb|EDZ44823.1| two-component response regulator [Rhodobacterales bacterium Y4I]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A       A   ++G + +            ++A  DV  I+  L   G   L
Sbjct: 3   ILVIEDDATTGPYVQAGLREEGHTADLVTDGREGLLQATAAEYDVLIIDRML--PGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A  + P I ++    +   +D  ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  SLIKTLRGAGVRTPAIMLTALSGVNDRIDGLEAGADDYLVKPFAFGELAARVAALARRPG 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +             +    R     G+   L  RE R+LE+L+  +G+   +T +  A++
Sbjct: 121 LQEQETVLRAGDLEMDLIRRKVTRAGQEIDLLPREFRLLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     + NVVE+HIS+LR K+    G + +++ R  GY I
Sbjct: 181 DIS-FDPQTNVVETHISRLRAKVDKPFGTELIETVRGAGYRI 221


>gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 247

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
 gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
          Length = 245

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 80/229 (34%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +   +    +      +       +  ++          +
Sbjct: 19  ILIVDDDADIVQLIEVHLRQEEFRVLRAYTGGEALNILDINDIQLVILDIM--MPAMDGI 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113
           E+ R IR    +P++ +S   +    +    +G DD + KP            ++     
Sbjct: 77  EVCRRIRERHTIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 136

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   +V  N+ +   + +    R   +  +   L + E  IL  +  NR +     +I
Sbjct: 137 FNHMPSEVHKNKIKIRGLEIDELSRKVMLYEKAINLTKTEYDILHLMAKNRNRVFTLEEI 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +I+         N V  H+++LR K+         + +   +GY I+
Sbjct: 197 YESIWRERAHE-SNNTVMVHLARLRNKIEENPKKPTVIQNVWGVGYKIE 244


>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYDGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+      L  + + D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +     +     +   + + +  R      +   L +RE  +L  L+ N+   V++ 
Sbjct: 122 EKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  D  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 QLLNKIWG-PDSNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYM 228


>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +           +        V      L R E  +L  L   RG+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY 
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 224

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++            S++     E    + S    DV  ++  L    +   
Sbjct: 4   ILIIEDDKNIQRLLGLELRHKNYSVDSAYDGEQGIEIFSKNSYDVVLLDLML--PKKSGK 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R     P+I I+   S+   ++  D G +D + KP    E+    RV    +  
Sbjct: 62  EVCRELRKLGDAPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVVTRNKEN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      I++    +   +      L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 122 SNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMKNKGLSCSREKIIVGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+  K     + + R  GY  
Sbjct: 182 -YDFDGEEKIVDVYINSLRKKIDPKSN--YIHTIRGFGYIF 219


>gi|85707059|ref|ZP_01038148.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85668500|gb|EAQ23372.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G+           +   ++ + D+  ++      GE  L
Sbjct: 7   ILVVDDHREIRDAVTRYLEKNGMRATSARDAVDMDAKLANGKYDLIVLDVM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R + A   VP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 65  SVCRRLSASGSVPILMLTALGEETDRIVGLEIGADDYLAKPFNPRELVARIKAILRRSTK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   A T   R  +                  E   L   E ++L  L+      +++ Q
Sbjct: 125 AEPYAGTLSGRRIAFAHWIIDTDSRVLSNEDGEQIDLTSAEFKLLTVLLERPRFVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G     V +  +++ IS+LR+K+  +      V + R  GY +
Sbjct: 185 LLDLTAGRAAS-VFDRTIDNQISRLRRKIELDPSRPRIVTTVRGGGYCL 232


>gi|325916549|ref|ZP_08178815.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325537222|gb|EGD08952.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 234

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 13  LVVEDEAAIADTVLYALRSEGYAAEHCLLGREALARLRADPADVVVLDVGL--PDINGFE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R+ S+VP+I ++        +   + G DD + KP   RE++ARV A  RR  V 
Sbjct: 71  VCRNLRSFSEVPVIFLTARTDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVA 130

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G   +  +G        + PL R E  +L  L+   G  +++ Q+    +
Sbjct: 131 AVAEPGWQPHGAFAIDREGSRIRYGDALLPLTRYEYALLAALLQRPGAILSRAQLMDRGW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               ++ +   V++HI  LR KLR      DP+ + R LGY+++
Sbjct: 191 DASADSAD-RTVDTHIKTLRGKLRLAGVPADPIRTHRGLGYALE 233


>gi|325567252|ref|ZP_08143919.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|325158685|gb|EGC70831.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 222

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +    +   D  +++   S      L      D+  ++  L   G+   
Sbjct: 3   ILIIEDNNEISEMLATILAAD-YTVQQAYSGTEGLLLFQQDAFDLILLDRML--PGKDGT 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP+I ++             +G +D + KP +  E+ AR+    R  K 
Sbjct: 60  QVLQEIRQTSTVPVIILTALDEPADVSTLLLAGANDYLTKPFNVEELKARIIVQLRTNKQ 119

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       I++  D    +       L ++E  I   L+AN  K   K  ++ A++
Sbjct: 120 PPPVASSHSYKNIQLLPDSFQLQRGEATVQLKKKEFEIFSLLLANPKKVYTKEMLYEAVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                  EEN +  HIS LR K++        +D+   +G  +
Sbjct: 180 QEP-YYGEENTINVHISHLRSKIKTLDPDEAYIDTVWGIGVKL 221


>gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 251

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +   +    +  +    ++      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDEAALAEVVASYLNREHFTTRIVDNGPDAVAVARDFDPDVVILDLGL--PGMDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 79  VCRQLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAMLRRPRAT 138

Query: 123 NNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                             P+R+   GR+  + GE   L R E  IL  L A  G  +++ 
Sbjct: 139 PEPESDRGGDLPAPLSFGPLRIDVAGREVSLDGEPILLTRTEFDILAALSARPGVVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  +R+KL +       V + R +GY +
Sbjct: 199 QLLETVREGP-WVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGYRM 247


>gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L    + D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|256850876|ref|ZP_05556265.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661087|ref|ZP_05862001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282932666|ref|ZP_06338079.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297205750|ref|ZP_06923145.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615938|gb|EEU21126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548024|gb|EEX24000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303176|gb|EFA95365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297148876|gb|EFH29174.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + V +     F  +  +++                +    I   L    +  +
Sbjct: 5   ILMVEDDSSVAEMMELFFKKEQWNVDIARDGLEAVDKFKERPDYYDMITLDLNLPKKDGI 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA S+ VP+I ++   S    +   + G D+ V KP     ++AR+ A++RR  
Sbjct: 65  QVAKEVRAISESVPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALHRRAA 124

Query: 121 VSNNRAETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + NN  +      F                  +  ++  L  +E  +L  +     +  +
Sbjct: 125 LENNDEDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPKQVFS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   ++G ++   EE  V++HI KLR+KL   +G   + +   +GY  D
Sbjct: 185 RDKLLELVWG-YEYYGEERTVDAHIKKLRQKLEE-VGPQIIQTVWGVGYKFD 234


>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
           C3-41]
 gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++           G +++     +    L      D+  ++  L       +
Sbjct: 3   LLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNL--PKMDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+   IR  +  V ++ +S   ++   +   D G +D + KP   +E+ AR+   + R  
Sbjct: 61  EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I + S  +   V GE+  + ++E  ILEYLM ++ K ++  ++   ++ 
Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +  +  N ++ HI  LRKK+ +     + + + R  GY I  N
Sbjct: 181 -SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEN 224


>gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +         +  ++         E   +  R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRALIAKYLRANNCNVATAADGREMERWIADHRVDLVVLDVML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA+S +P+I ++        +   + G DD + KP + RE+LAR+ ++ RR   
Sbjct: 66  SLCRKIRANSALPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRRQAS 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           +   + T                             +   E  +L+ L    G+ +++  
Sbjct: 126 AVTASATPGATTLGFLGWRMDCRRRELRNPDGALVAMTSAEFDLLQALCERAGRVLSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +    +G  +    E  ++  IS++R+K+  +      + + R  GY  
Sbjct: 186 LLDLTHGR-NVGAFERSIDVLISRIRRKIEPDPREATLIKTVRAGGYVF 233


>gi|330818201|ref|YP_004361906.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370594|gb|AEA61950.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 247

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L    G  V
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMPGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 63  LRRLRA--RNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRILTVRGLGYCLEK 220


>gi|182434880|ref|YP_001822599.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463396|dbj|BAG17916.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 249

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++ +D     +        +G ++                  D+  ++  +    G  V+
Sbjct: 15  MVAEDDEKQAELVRRYLEREGHAVRVVGDGLAALDAVRHREPDLLVLDVMMPRADGLDVV 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R    H ++P++ ++   +    L   D G DD + KP   RE++ARV  + RR + 
Sbjct: 75  RVLRS--EHRELPVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRR 132

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +                 V     +  V G        E RIL  L A   +  ++ ++ 
Sbjct: 133 AATEPAAADPVLRVGALVVDPARHEVSVDGATVECTPGEFRILAALAAGPDRVFSRQRLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G FD  +    V+ H+  LRKK+       + + +   +GY +
Sbjct: 193 EELHG-FDRYISARTVDVHVMNLRKKIERAPRRPERLLTVFGVGYKL 238


>gi|13324638|gb|AAK18821.1|AF327738_3 response regulator Rr1 [Streptococcus thermophilus]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +    G  +           +       +  ++  L        
Sbjct: 4   ILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E   + +     D   QGEV  L + E +IL+ L  + G  V++  +   ++
Sbjct: 122 FGKDQNLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFEHAGNIVSREDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  +++ LRKKL      D +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVAHLRKKLEAVGLKDFIETKKGVGY 220


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVM--MPEMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
 gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESIHLIVLDLML--PGEDGLS 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R  ++ +P+I ++        +   + G DD + KP + RE        +  +  
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       +     G  ++    R+     E  PL   E  +L+ L++   + +++ ++
Sbjct: 126 ELPGAPSQDDAVITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSYPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            S   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 186 MSLARGR-EYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVF 232


>gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +  G    F  +   ++     E     ++   + DV  ++  L    +   
Sbjct: 2   LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVML--PEKDGF 59

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    +      P++ I+     ++ L  F  G DD + KP +  E+ ARV AI +R  
Sbjct: 60  EVLEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTM 119

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                 +    G+       E  IL YL+ ++G+ V + Q+   
Sbjct: 120 PPAEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRD 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++G+ +  +    ++ H++ +RKK+  +      +++   +GY  D 
Sbjct: 180 VWGIDENII-TRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDE 225


>gi|56695168|ref|YP_165515.1| DNA-binding response regulator PetR [Ruegeria pomeroyi DSS-3]
 gi|56676905|gb|AAV93571.1| DNA-binding response regulator PetR [Ruegeria pomeroyi DSS-3]
          Length = 233

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +      E    + S    D+  ++      GE  +
Sbjct: 8   LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRILSGLDFDLIVMDVM--MPGEDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
            L R +R     P++ ++     +  +   ++G DD + KP   R        + R    
Sbjct: 66  SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPRELLLRINAILRRVPD 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    + GPIR   +  +     ++  L   E ++++   A  G+ + +T++  
Sbjct: 126 TSAQDAAPKFLQLGPIRYDIERGEMWQGDQLVRLTATENQLMKIFAARPGEAITRTKLVE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G      +E  V+  I++LR+K+  N      + + R  GY +
Sbjct: 186 DL-GRDRGQAQERAVDVQITRLRRKIEPNPKQPRYLQTVRGAGYML 230


>gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073]
 gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 8   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 66  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 125

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 126 AMGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 232


>gi|15904039|ref|NP_359589.1| response regulator [Streptococcus pneumoniae R6]
 gi|116516299|ref|YP_817405.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148988837|ref|ZP_01820252.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148991949|ref|ZP_01821723.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998007|ref|ZP_01825520.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149020110|ref|ZP_01835084.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168489266|ref|ZP_02713465.1| response regulator [Streptococcus pneumoniae SP195]
 gi|168491724|ref|ZP_02715867.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168494048|ref|ZP_02718191.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|168576065|ref|ZP_02721970.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|194396684|ref|YP_002038788.1| response regulator [Streptococcus pneumoniae G54]
 gi|221232895|ref|YP_002512049.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225857761|ref|YP_002739272.1| response regulator [Streptococcus pneumoniae P1031]
 gi|303254855|ref|ZP_07340940.1| putative two-component system, response regulator [Streptococcus
           pneumoniae BS455]
 gi|307068804|ref|YP_003877770.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|15459702|gb|AAL00800.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076875|gb|ABJ54595.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147756017|gb|EDK63060.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147925648|gb|EDK76724.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147928998|gb|EDK80009.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147930788|gb|EDK81769.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183572205|gb|EDT92733.1| response regulator [Streptococcus pneumoniae SP195]
 gi|183574083|gb|EDT94611.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183575927|gb|EDT96455.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|183578113|gb|EDT98641.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|194356351|gb|ACF54799.1| response regulator TCS06 [Streptococcus pneumoniae G54]
 gi|220675357|emb|CAR69956.1| putative two-component system, response regulator [Streptococcus
           pneumoniae ATCC 700669]
 gi|225726115|gb|ACO21967.1| response regulator [Streptococcus pneumoniae P1031]
 gi|301795106|emb|CBW37576.1| putative two-component system, response regulator [Streptococcus
           pneumoniae INV104]
 gi|301802857|emb|CBW35635.1| putative two-component system, response regulator [Streptococcus
           pneumoniae INV200]
 gi|302598126|gb|EFL65187.1| putative two-component system, response regulator [Streptococcus
           pneumoniae BS455]
 gi|306410341|gb|ADM85768.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|332071463|gb|EGI81957.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071635|gb|EGI82128.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198607|gb|EGJ12690.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332199013|gb|EGJ13094.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 217

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  ++++G  A   ++G  +      +            +  ++       +   
Sbjct: 3   ILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMVLDLM--MPRKSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I     +P+I +S      T    FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINQKHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V         + E   L  +E  +L+ L+ ++ + +++ QI   I    
Sbjct: 121 IEDIWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEISKDV 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + + +GY I
Sbjct: 181 ADLPCDRVVDVYIRTLRKKL----ALDCIVTVKNVGYKI 215


>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
 gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
          Length = 236

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   ++D                ++++    +    R D+  ++  L  G G ++L
Sbjct: 7   LVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGGSGIELL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
              +      ++P+I ++   +    +   + G DD + KP   RE++AR+ A      +
Sbjct: 67  RRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKALLRRSGV 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +R +   + +    R   +  E   +   E  +L++ M++  +  ++ Q+   ++G
Sbjct: 127 GESADRMQVSELVLDGKSRRVYLADEPLDMGPTEFNLLQFFMSHPERAYSRNQMLDQVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
             +  VEE  V+ HI +LRK L    K     + + R  GY  
Sbjct: 187 A-NVYVEERTVDVHIRRLRKALQVEGKDYSGLIQTVRGTGYRF 228


>gi|288919562|ref|ZP_06413892.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288349068|gb|EFC83315.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 243

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 19/225 (8%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AH 70
           ++        +G  +           L    + D+  ++          LE  R +R   
Sbjct: 13  RESLERSLRFEGYEVRTAADGVDALDLVGREQLDIVVLDVM--MPRMDGLETCRRLRGRG 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---------------AI 115
           + VP++ ++   +L   +   D G DD + KP    E+ AR+                  
Sbjct: 71  NDVPVLMLTARDALADRVSGLDVGADDYLVKPFALEELFARLRALIRRATLTTRGAAGQG 130

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   +      +R+    R          L + E  +LE  +++  + ++++ I  
Sbjct: 131 QAADRDGASALLYSDVRLDPVSRQVLRGPRELTLTKTEFELLELFLSHPRQVLSRSTIME 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D     N +E  +S LR+KL        + + R +GY +
Sbjct: 191 KVWG-YDFGPSSNSLEVFVSYLRRKLEADGEPRLLHTVRGVGYVL 234


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     A   +   +++     E       +   D+  ++  L       +
Sbjct: 4   ILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVML--PKLTGI 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR     +P++ ++   + +  +   D G DD V KP    E+LAR+ A+ RR  
Sbjct: 62  GLCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ N   E   +R+     +     ++  L  +E  +LE  + N    ++++ I   ++ 
Sbjct: 122 VAPNPILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D    E  V+ HI  LRKKLR      D +++   +GY +
Sbjct: 182 FED-PPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRL 222


>gi|145297137|ref|YP_001139978.1| two-component system potassium response regulator KdpE [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142849909|gb|ABO88230.1| two-component system potassium response regulator KdpE [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 227

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++         +G  +     +     L      D+  ++  L       +
Sbjct: 4   ILVIDDEAAIRRFLRISLIAEGHQVSEAVGVNEGLELYRHLNPDLVILDLGL--PDGDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
           ++ + IR H Q P++ +S   S Q  +   D+  +D ++KP         I   +     
Sbjct: 62  QILQAIREHHQNPVLVLSARDSEQEKVRLLDASANDYMSKPFGIGEMMARIRVLLRQRAG 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + + +      +  E  PL R+E  +L+ L+ + GK V +TQ+ + I
Sbjct: 122 VSSGERRHFPQCGLTLDASSHKVSLHDEEIPLSRKEFALLQALVCHPGKLVMQTQLLNDI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G   +  + + +   I+ LRKKL +       ++++  +GY  
Sbjct: 182 WGPSHKE-DTHYLRIVIASLRKKLGDNPQQPSLIETESGIGYRF 224


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++   I+  G  G  ++    L            DV  ++  L   G    E
Sbjct: 10  LVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVML--PGADGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           + +++RA +  VP++ ++   +++  +     G DD V KP    E+ AR+         
Sbjct: 68  ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRARG 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +     +    GE   L   E R+L YL++++G+ +++ QI  
Sbjct: 128 GAPAPEETTGLRCADLEIDDPRHEVRRAGEPVDLSPTEYRLLHYLLSHQGQVLSRAQILE 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++  +D   +  VVE  +S LR+K+        + + R +GY++
Sbjct: 188 AVW-QYDFGGDTVVVERFVSNLRRKIDQ-GREPLLHTVRGVGYTL 230


>gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
 gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +      + +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSAESVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVF 232


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G      ++      L      D+  ++          +
Sbjct: 5   ILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIM--MPQMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR K 
Sbjct: 63  EAAFKIREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N RAE   I+     +    R   V+G+   L  +E  ILE L  ++G  ++  +I+ A
Sbjct: 123 YNQRAEHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++   D    ++ V  HI+K+R+K+ +       + +   +GY I
Sbjct: 183 VW-QADALKSDSTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226


>gi|240169880|ref|ZP_04748539.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           kansasii ATCC 12478]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   ++        +    DV  ++  L       ++
Sbjct: 5   LVIDDEPHILRALRINLTVRGYEVITASTGAGALRAAAEHPPDVVILDLGL--PDISGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        ++  D+G DD V KP    E LAR+ A  RR   +
Sbjct: 63  VLAGLRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNAAA 122

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +         V    +     G    L   E  +LE L+ NRGK V + ++   ++
Sbjct: 123 SEVDQPVVETDAFTVDLAAKKVTKNGAEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G    A E + +  ++++LR+KL +       + ++  +GY  +
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFE 225


>gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 233

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        ++G  +         +   +    D+  ++      GE  +
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +RA   VP+I ++        ++  ++G DD ++KP   R     I   +     
Sbjct: 72  EVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAG 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++ +   EV  L  RE+ I+       G  + + ++    
Sbjct: 132 GEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 189 --GNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRL 230


>gi|159040344|ref|YP_001539597.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919179|gb|ABW00607.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D +++         D G  +           + +    D+  ++  L       
Sbjct: 3   LILLVEDDSIITAALSRALTDAGHVVRAVGQAAEALRVLTGEPPDLVLLDLGL--PDIDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
            +  R+IR+ S+VP++ I+   S    +   +SG DD V KP     ILAR         
Sbjct: 61  TDALRMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYR 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +        GP+ +    R   + G+   L RRE  +L YL    G+ V++ ++ +
Sbjct: 121 SGTDQEGPGTITVGPLVIGRKERRVTMDGKPLKLTRREYDVLTYLAERAGQVVSRRELMT 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLG 217
            ++       EE  ++ HIS LR+KL         + + R +G
Sbjct: 181 EVW-RQARIGEEQTIDVHISWLRRKLGETAARPRLLHTVRGVG 222


>gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
 gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +            +     +       L  +   D+  ++  L   G+  + 
Sbjct: 5   LIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQYFDIILLDLML--PGKDGIT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114
           L + IR  S VP+I ++        L   + G DD + KP   RE+            + 
Sbjct: 63  LCKEIRQFSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVLRRTQSQ 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K    ++    + +  +     V G    L   E  +L+ L    G+  +++Q+ 
Sbjct: 123 TQSLDKSDTIKSTPKVVELDPEKYQARVFGIPVELTAIEFNLLQILAKEPGRIYSRSQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +Y      V E  ++SHI KLRKKL + K   + V S   +GY ++
Sbjct: 183 NHVY-HDHRVVSERTIDSHIKKLRKKLNDIKPDMELVQSVYSVGYKLE 229


>gi|118580643|ref|YP_901893.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503353|gb|ABK99835.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 222

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G       +             D+  ++  L   G   LE
Sbjct: 6   LIVEDEEKLSSLLHDYLSQSGFETHRLRNGLDVVPWVRERNPDLILLDLML--PGRDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR+ S VP+I  +        L   + G DD + KP   RE+         R    
Sbjct: 64  ICKEIRSFSSVPIIMTTARVEEIDRLLGLELGADDYICKPFSPREV-VARVKAVLRRTDG 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +   + +        +      L   E ++L++L AN G+  ++ Q+   IY   +
Sbjct: 123 GTTIKASGLTLDELRLRAVLNDRDLELTAVEFKLLQFLAANPGRIYSRQQLMDRIY-PDE 181

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             V +  ++SHI KLR+K+       + + S   +GY  +
Sbjct: 182 RIVSDRTIDSHIKKLRRKIAVATPDEELIHSVYGVGYKFE 221


>gi|306825719|ref|ZP_07459058.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432080|gb|EFM35057.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 260

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L  + G  +           L   +   +  ++  L        
Sbjct: 39  ILLVEDDQVIRQQVGKLLSEWGFEVILVEDFMEVLTLFVQSEPHLVLMDIGLPL--FNGY 96

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  SQVP++ +S        +   + G DD + KP   + +LA+V         
Sbjct: 97  HWCQEIRKISQVPIMFLSSRDQAMDIVMAINMGADDFITKPFDQQVLLAKVQGLLRRSYE 156

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 157 FGRDESLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRILFEHAGNIVARDDLMRELW 216

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 217 -NSDFFIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGY 255


>gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P + ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGNQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 8   LLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTKQTICYKGIELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|167759955|ref|ZP_02432082.1| hypothetical protein CLOSCI_02319 [Clostridium scindens ATCC 35704]
 gi|167662574|gb|EDS06704.1| hypothetical protein CLOSCI_02319 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +   ++  ++G + ++  ++         + + +++ ++  L       
Sbjct: 11  ILLVDDEPELLNMVTSILENEGYTNIKTASTASEAIDACKNFKPELAVLDVML--PDGNG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            +L R ++  S  P++ ++     +     F  G DD + KP   +E+  R+ AI  R  
Sbjct: 69  FDLLRELKRISDFPVLFLTARGEDEDKWTGFGRGADDYMVKPFLPKELTFRIMAILRRSY 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K            +  D  +    G+V PL  +E  IL  L  N GK V    +  A +G
Sbjct: 129 KNDAPLVILAESEIDFDRAEVRKAGDVLPLTAKEYEILSSLYRNAGKIVTIDTLCEAAWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    EN + +HI ++R+K+  +      + + + LGY +
Sbjct: 189 -DNPYGYENSLMAHIRRIREKIEADPSHPVSLVTIKGLGYKL 229


>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++     +  +DG              +  +   D+  ++           
Sbjct: 3   IMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVM--MPKLNGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAA 114
           ++   +R   S VP+I +S    +      F +G DD + KP          E L R   
Sbjct: 61  DVCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       + G + +F    +  ++G+   L  +E +IL Y+ ++ GK   + Q+ 
Sbjct: 121 HQAGETEERESIKLGDLEIFFKRYEARLKGKRVELTPKEFKILAYMASHPGKVYTRKQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + ++G  D   E   +   I K+R+K+  +      + +   +GY  
Sbjct: 181 TYVWGE-DYVGELTGIAVFICKIREKIEEDPSKPKYLQTVWGVGYKF 226


>gi|126172995|ref|YP_001049144.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153002077|ref|YP_001367758.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160876795|ref|YP_001556111.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974655|ref|YP_002359406.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410608|ref|ZP_07392226.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304701|ref|ZP_07584451.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996200|gb|ABN60275.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151366695|gb|ABS09695.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862317|gb|ABX50851.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499790|gb|ACK47983.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304351092|gb|EFM15492.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912103|gb|EFN42527.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315268997|gb|ADT95850.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 234

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D G  +   +  +F   + +    D+  ++  L    +   
Sbjct: 7   ILVVEDDISLAEWISDYLLDHGYEVTVASQGDFALEMIAEEIPDLVLLDVML--PVKNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ +  RA    P++ ++        +   D G DD + KPI  + +    +        
Sbjct: 65  DVCKEARAFYAGPILFMTACVEDGDEIRGLDVGADDYLTKPIRPQVLLARIKALLRRVGD 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +     + + +  +   +  +   L   E  +L  L    G  V++ ++ + + G
Sbjct: 125 EEQKQQLVFDSLVLNATAKSVTIDKQPLDLNANEFDVLWLLALKAGTIVSRNELVAQLRG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + +    +  V+  IS+LRKKL+  L     V + R  GY  
Sbjct: 185 I-EYDGLDRSVDIRISRLRKKLQEALSQPYKVKTIRGKGYLF 225


>gi|329938083|ref|ZP_08287534.1| two component positive transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329302572|gb|EGG46462.1| two component positive transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 246

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D            +    ++     L    R D + ++  L         
Sbjct: 26  LLVEDEESIADVLAIALRYHRFQVMTAGTVREALALTERVRPDAALLDVML--PDGDGRA 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +RA      +           +       DD + KP H  E++ARV A+ RR + +
Sbjct: 84  LGKELRARMPGLAVVFVTARDAPGEIVGALGFGDDYITKPFHIDEVVARVTAVLRRTRSA 143

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +      P+R                G +  L   E  +L +L+ N G+ V K Q+   +
Sbjct: 144 DVLPHPPPLRYGDLELDETTYCAHRAGRMVELTPTEYALLRFLVRNGGRIVTKEQLLRHV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +       E  VVE++IS LR+KL   LG   + ++R +GY
Sbjct: 204 WAYEHAPAESTVVETYISYLRRKL-APLGPPLITTRRGVGY 243


>gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDTIVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
 gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
          Length = 251

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +  ++      L  +   DV  ++  L       L
Sbjct: 29  ILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANNPDVILLDLGL--PDIDGL 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   +R  S +P+I +S     +  ++  D G DD + KP H  E    +      ++ 
Sbjct: 87  TVLEQVRQSSDIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRKHQP 146

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               NN+     +R+  D R   V G    L   E ++L  L+ N GK +  + I   I+
Sbjct: 147 KISKNNQFTLDGLRIDFDKRKVTVDGNEVHLTPIEYKLLVLLVENAGKVLTHSFINKEIW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  +   +   +   ++ +R+K+         + ++  +GY  
Sbjct: 207 GYTNTE-DSQSLRVFMANIRRKIEKDTAKPRYILTEVGVGYRF 248


>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 229

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +G  +    S    +        D+  ++  L   G    
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
                IR     P+I IS   +++  ++    G DD ++KP    E+LAR       +  
Sbjct: 65  IFIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKI 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F  
Sbjct: 125 TNSSKGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFET 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 185 VW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|325280665|ref|YP_004253207.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312474|gb|ADY33027.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +++  NS E    L +   E +  ++     +G    
Sbjct: 10  ILVVDDEEDLCEILQFNLESEGFAVDIANSAEEALKLLTDEHE-LILLDVM--MEGMSGF 66

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   +R    +  P+I ++   +    L  F  G DD + KP   +E+ ARV A+ +R 
Sbjct: 67  KMAEKVRKEMHMNTPIIFLTAKDTENDMLTGFSIGGDDYIAKPFSIKEVAARVKAVLKRA 126

Query: 120 KVSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +   I +       + +   +  +   L ++E  IL  +     +  ++  I 
Sbjct: 127 GNIALPEKKKTIEIGELTLDLNSKTVYLNEQQILLTKKEFEILSMMAKAPNRVFSREDIL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +   D  V E  V+ HI++LRKKL        + ++   GY ++
Sbjct: 187 GKAW-QEDGYVLERTVDVHITRLRKKLGAFG--KHIANRSGYGYCLE 230


>gi|300716333|ref|YP_003741136.1| Signal transduction response regulator [Erwinia billingiae Eb661]
 gi|299062169|emb|CAX59285.1| Signal transduction response regulator [Erwinia billingiae Eb661]
          Length = 230

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    D   +           + +  + ++  ++  L   G    
Sbjct: 6   ILIVEDDADAASVLEAYLKRDHFEVAIVGDGLRALDVVAQWKPNLILLDVML--PGLNGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP+I ++        +     G DD V KP +  E++ARV A+ RR   
Sbjct: 64  EVLAALRRKSHVPVIMVTAMGEAHDKIGALRYGADDYVVKPYNPGEVVARVHAVLRRGVP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174
           +    E           +                L   E  +L  LM +  +  ++ Q+ 
Sbjct: 124 AALADERLRWNGLEVDSESMTATVGSEAGRALLDLTPTEFCLLTTLMQSPTRAFSRLQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                L D    E VV++H+  LRKKL      + + + R +GY  
Sbjct: 184 EKC--LPDSEALERVVDTHVYNLRKKLELAGISEVLINVRSVGYRF 227


>gi|210622831|ref|ZP_03293375.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
 gi|210154048|gb|EEA85054.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
          Length = 228

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +  G        G  ++   +++  E L  + + D++ ++  L        
Sbjct: 4   IFFVEDDLSLISGLSFALKKQGYEVDNARTIDEAEKLWQNNKYDLAILDISL--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRR 118
           +L   IR +S++P+I ++        +   D G DD + KP         +  +      
Sbjct: 62  QLCEKIRLNSKIPIIFLTAADEETDIIMGLDMGADDYITKPFKLAVFLSKVNAILRRSND 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N    +  I V     D    GE   L   E ++L   M N    +++ QI   ++
Sbjct: 122 FNQKNTVLNSNGISVNLLNGDVTKNGETLNLTSGEYKLLCLFMENPNIILSQEQILGKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
              ++ ++ + +  +I +LRKK+ +       + + R +GY  + 
Sbjct: 182 DSNNDFIDNSTLTVYIRRLRKKVEDDPSNPTNIVTVRRMGYKWNV 226


>gi|167766452|ref|ZP_02438505.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1]
 gi|167711861|gb|EDS22440.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1]
          Length = 245

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F                       + D+  ++          +
Sbjct: 26  ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R+IR+    P++ ++        ++   SG DD + KP   RE+ AR+        R
Sbjct: 83  EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 142

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   + G      + E +I+E+L  + G+   K +I++ + 
Sbjct: 143 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQVC 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +   +   + ++RKK+ +    + +++   +GY 
Sbjct: 203 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 242


>gi|126650075|ref|ZP_01722308.1| DNA-binding response regulator [Bacillus sp. B14905]
 gi|126593247|gb|EAZ87209.1| DNA-binding response regulator [Bacillus sp. B14905]
          Length = 235

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +                 +          +  D   ++  L       +E
Sbjct: 7   LIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSL--PDCDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR HS V ++ +S   S    +     G DD + KP    E++AR+ A  RR    
Sbjct: 65  ICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 124

Query: 123 NNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I +           +  PL  +E  +L +L  NR +  +K+Q+  
Sbjct: 125 LQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A++G +D   +EN +  +I ++R+K+  N      + +   +GY  
Sbjct: 185 AVWG-YDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229


>gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +           + G  ++   +    + L  +   D+  ++  L        
Sbjct: 3   LLVVEDESKTGQYLRQGLTEAGFVVDLVGNGLDGQHLALNESYDLIILDVML--PDLDGW 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
             L  +  A S VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RILLSLRAAESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++  +R + G + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 VQMGLDRIQVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDDFDAKLIQTVRGMGYVLE 222


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L S    D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|21232126|ref|NP_638043.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113875|gb|AAM41967.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  +     +G   E             +   D+  ++  L        E
Sbjct: 9   LVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGL--PDINGFE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S+VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 67  VCRTLRGFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVA 126

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G   +  DG        + PL R E  +L  L+   G  ++++Q+    
Sbjct: 127 VAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRSQLMDRG 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           +    ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 187 WDASADSAD-RTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV 231


>gi|326571623|gb|EGE21638.1| two-component system response regulator [Moraxella catarrhalis BC7]
          Length = 237

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +                + D+  ++  L   G   L
Sbjct: 11  ILIVEDDERLAMLTQDYLRKNGLDVAIETDGARAIRRIIGEQPDLVVLDVML--PGSDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +RAH Q P++ ++        +   + G DD V KP+  R +LAR       +  
Sbjct: 69  AVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 128

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S  R E G + + + GR   +  E+      E  +L  L +N G+ +++  IF  
Sbjct: 129 VPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 189 LRGI-EYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGYLFVKEGN 237


>gi|255318312|ref|ZP_05359547.1| transcriptional regulatory protein RstA [Acinetobacter
           radioresistens SK82]
 gi|262379056|ref|ZP_06072212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304624|gb|EET83806.1| transcriptional regulatory protein RstA [Acinetobacter
           radioresistens SK82]
 gi|262298513|gb|EEY86426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 238

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              S + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDMVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVPKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|300023806|ref|YP_003756417.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525627|gb|ADJ24096.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +          +    D+   +          +
Sbjct: 7   IALVDDERNILTSLRMALEAEGYKVRTYGDGVSALEALTEEPADLGIFDI--KMPRMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R I+ RV A+ RR+  
Sbjct: 65  ELLRRVRQQSTMPVIFLTSKDEEIDELFGLKMGADDYIAKPFSQRLIVERVKAVLRRVSP 124

Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +        +            +        +   L   E  IL+ L    G    +  
Sbjct: 125 KDGATVEDEAKRVLERGKLKLDPERHTCHWDSKPVTLTVTEFLILQALATRPGVVKTRDA 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 185 LMDAAYD-DQVYVDDRTIDSHIKRLRKKFKQVDDDFDVIETLYGVGYRF 232


>gi|238754408|ref|ZP_04615764.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
 gi|238707441|gb|EEP99802.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  R H    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRNHQAKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNSG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   E  P  +    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIEFQPFMIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKKL+ +   D + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQVEHDKDVITTIRGQGYRFD 221


>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|227875996|ref|ZP_03994118.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977100|ref|ZP_06184074.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1]
 gi|306819276|ref|ZP_07452986.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307700171|ref|ZP_07637214.1| putative Transcriptional regulatory protein WalR [Mobiluncus
           mulieris FB024-16]
 gi|227843420|gb|EEJ53607.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269934931|gb|EEZ91491.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1]
 gi|304647942|gb|EFM45257.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307614630|gb|EFN93856.1| putative Transcriptional regulatory protein WalR [Mobiluncus
           mulieris FB024-16]
          Length = 238

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +E  +S      +  + + + + ++  L       
Sbjct: 11  ILIVDDEPDILELVRTTLENEGYTQVETASSARAAGQILRTTKPEAAILDVML--PDGNG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
             L   IR    +P+I ++              G DD + KP +  E+  R         
Sbjct: 69  FVLCDEIRKTRDIPVIFLTARDEPTDKFQGLGMGADDYITKPFYPEELALRLAAVLRRCY 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +  SN          F         G    L  +E  +L+ L  N G+ V   ++  
Sbjct: 129 PEDVAESNRVEIAAGTIDFDCAVMIRSDGGEIALTAKECTLLQALCQNAGRIVTTDRLCI 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A +G  +    E  + SHI ++R+K+  N      + + R LGY +
Sbjct: 189 AGWGE-NYFGYETSLLSHIRRIREKIEANPSAPVTLLTARGLGYKL 233


>gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  L++D    +  +    +    + +    + +    ++S +   ++      +
Sbjct: 4   ILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQN-PEISLVILDVMMPQYDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++     Q  L    SG +D + KP H   +LAR   + R ++ 
Sbjct: 63  EVLRRIRLQSNVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLMRMVRN 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   + G + V        V+G+   L  +E ++L YLM NR   + + QI   ++G 
Sbjct: 123 KSDSHLQVGEVVVDEKKCRVYVRGKEISLTHKEYQLLVYLMQNRDIVLTRDQILEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   +   +++HI  LR  +  K     + + R +GY++
Sbjct: 182 FDYEGDIRTIDTHIKMLR--MDLKSCGSYIRTIRGMGYTL 219


>gi|29826613|ref|NP_821247.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29603709|dbj|BAC67782.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++  +      W   +    V  ++  L        
Sbjct: 3   ILVVEDERELAQTLRLGLTAEGYRVDVAHDGREGLWKARTGDYAVVVLDLMLPL--LNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRL 119
            +   +R      P++ ++         +  D+G DD V KP  +   +    A + R  
Sbjct: 61  RVCAQLRREGITTPVLVLTAKDGDWDQAEALDTGADDYVTKPFTYLVLVARLRALMRRAR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + +    R     G   PL  RE  + E L    G+ V K++I    + 
Sbjct: 121 GAASPLLAVGDLVLDVAARTCLRSGVAVPLTPREFAVAEVLARRPGEAVTKSEILHHAW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DEA + N+VE  +S LR+K+    G   + + R +GY +
Sbjct: 180 -PDEAEDLNLVEVRVSALRRKIDTAFGRQSLLTVRGVGYRL 219


>gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae Rd KW20]
 gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Haemophilus influenzae F3031]
 gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB)
           [Haemophilus influenzae Rd KW20]
 gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2866]
 gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3031]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +   +  +            +  ++  L G  G + 
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
           ++  +   +++ +P+I ++   + +  +   ++G DD + KP      +    A   R  
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + +  + +    Q +   L   E ++L + M +  K  ++ Q+ + I+ 
Sbjct: 124 EQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIWH 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE   V+S+I +LR+ L        + + R  GY  
Sbjct: 184 N-DLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRF 223


>gi|319407929|emb|CBI81583.1| transcriptional regulator BatR [Bartonella schoenbuchensis R1]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRSNA 128

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             + G + +  +      +     L   E  IL+ L    G   ++ 
Sbjct: 129 RNQALLTGTSPASSLKRGDLVMDQERHTCTWKNRPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAY-NDQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++          L +    DV  ++  L     + +E
Sbjct: 4   LVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGL--PDMEGME 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + +R  SQVP+I +S   S    +   DSG DD V KP    E+    R A       
Sbjct: 62  VIQRLRGWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSVRV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T    V    +    +GE   L   E  ILE L  + G+ V++ Q+   ++G 
Sbjct: 122 DEAPVVRTPSFTVDLGAKRVLREGEEVRLTPTEWHILEILARHAGQLVSQRQLLHDVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                E N +  ++++LR+KL         + ++   GY  +
Sbjct: 181 PAYQSETNYLRVYMAQLRRKLEPDPACPRYLITEAGRGYRFE 222


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+            +     +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMI 238


>gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 244

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         S   D+  ++      G    
Sbjct: 22  LLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVM--MPGLDGW 79

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ R++R+    +P++ ++    ++  +   + G DD + KP    E+LARV        
Sbjct: 80  EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 139

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 140 GSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+ +      + + R +GY +D
Sbjct: 200 DM-NFDSDTNVIEVAVRRLRAKVDDDFEHKLIHTVRGMGYMMD 241


>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E           D+  ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +          +        + G    L  RE  +L  L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESTIRHGNLTLDPASHQVTLDGAPVALSAREFALLAALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G + + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216


>gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +           G       S      L      D+  ++           
Sbjct: 4   ILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELVQQKEFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +     G DD + KP   + +         R   
Sbjct: 62  ETCKQIRQLSNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVL-VARIEAVLRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KEGFVSFNGIEWDKMKHTVTVYNEKISLTPIEFALLGLFLQNVNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
              +E   V+SHI  +R+KLR K     + +++   +GY 
Sbjct: 180 QTDIEYRTVDSHIRNIREKLRKKGFPVENYLETIYKVGYK 219


>gi|332559743|ref|ZP_08414065.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332277455|gb|EGJ22770.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 228

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    S+       +     +  ++  L       +
Sbjct: 7   ILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGTDRAALDAPTLVILDLGL--PDGDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQVP+I +S        +   D+G  D V KP    E     R     R  
Sbjct: 65  EVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+G
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              E  +   +  +I +LR KL +       + ++  +GY  
Sbjct: 185 PAHEE-DSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRF 225


>gi|332652639|ref|ZP_08418384.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517785|gb|EGJ47388.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 3/209 (1%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
               +    DG ++   ++    + L  + R D+  ++  L       L+L    R    
Sbjct: 15  QAVKSALEQDGHAVALAHNAAQAQKLWQAVRFDLCLLDIRL--PDGSGLDLCAGFRQARD 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I ++   + +  +  F  G DD V KP     +  RV A+ RR            + 
Sbjct: 73  TPVIFLTANDADEDVVRGFQMGGDDYVTKPFAPEVLRQRVLAVLRRTGSGAQIIRYQELE 132

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  + +    QGE   L   E ++LE L  +RG+ + +T +   I+ +    ++EN +  
Sbjct: 133 IDLERQTVRRQGETIHLTATEWKLLERLARSRGRVLTRTMLLEQIWDVEGSFIDENTLSV 192

Query: 193 HISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           HI +LR+KL  +      V +   LGY+ 
Sbjct: 193 HIRRLRQKLEPDPKNPRYVVTVFGLGYTF 221


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++  +      G  +   N  E       +   +   +   ++  G    
Sbjct: 4   ILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGIDGF 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR   S + +I ++        +     G DD + KP    E+ ARV AIYRR+ 
Sbjct: 64  TVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRRVC 123

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +S  + E        P  +    R     GE   L + E +I+E+ M N+   + +  I 
Sbjct: 124 MSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPIELTQVEYQIMEFFMNNKNTALDRASIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + I+G      ++ +V+ +I ++R K+         + +    GY  +
Sbjct: 184 NHIWGES-YYGDDKIVDVNIRRIRMKIEEEPSNPKYIITIWGYGYKWN 230


>gi|153815072|ref|ZP_01967740.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
 gi|145847640|gb|EDK24558.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
          Length = 211

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 88/215 (40%), Gaps = 6/215 (2%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           ++         +G ++           +    +E ++ +   ++       ++ R IR  
Sbjct: 1   MRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKE-IALVILDVMMPKMDGWQVCREIRET 59

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLKVSNNRAET 128
           S+VP+I ++     +  L  F+ GVD+ +                        + +  E 
Sbjct: 60  SKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLGNTAGDVIEA 119

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I++       ++  ++  L  +E  +L Y + N+G  +++ +I + ++  +D   +  
Sbjct: 120 GDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN-YDYFGDAR 178

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++H+ KLR KL ++   + + +   +GY  + N
Sbjct: 179 TIDTHVKKLRSKLGDRG--EYIKTIWGMGYKFEVN 211


>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 257

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 31  LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGL--PKMDGI 88

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R +++ +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 89  SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V+G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 209 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 244


>gi|83749138|ref|ZP_00946142.1| Transcriptional regulator, two component response regulator
           [Ralstonia solanacearum UW551]
 gi|83724197|gb|EAP71371.1| Transcriptional regulator, two component response regulator
           [Ralstonia solanacearum UW551]
          Length = 256

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G+             L  S + D+  ++          
Sbjct: 28  LILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVLLDV--QMPHVDG 85

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            +    IR     P+I ++        L     G DD V KP +  E           +R
Sbjct: 86  WKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSR 145

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A  R  +V         +           Q  V  L   E ++L  L     +  ++ 
Sbjct: 146 SDAGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHVLALTLTEFKLLAQLARAPKRVFSRA 205

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +A   L +    E  V+SHISKLRKKL +          R +GY +
Sbjct: 206 ELLAAC--LPEGDTLERTVDSHISKLRKKLEDLGVEGMPVGVRGVGYRL 252


>gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 280

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   +  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLEK 220


>gi|282862377|ref|ZP_06271439.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282562716|gb|EFB68256.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 230

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARRYEVDAAPDGATALQLAAARHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      ET    V    +    QG    L   E  +LE L+ N G+ V++ Q+  
Sbjct: 123 GQDGADDLTVVETEGFTVDLAAKKVNRQGRDVRLTPTEWHLLEVLVRNGGRLVSQKQLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 EVWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 228


>gi|229073271|ref|ZP_04206423.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709846|gb|EEL61868.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 238

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 12/212 (5%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
               +   +   ++ E           D++ ++           +L + IR   Q+P++ 
Sbjct: 21  FLEMENFFVVEASNGEVALKCLEENHIDLAIVDIM--MPKMDGYQLIKKIRETLQLPILI 78

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--------RAETG 129
           +S        +     G DD + KP    EI+ARV A  RR    N+        +   G
Sbjct: 79  LSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYEFNDKAVEGKEKQIHMG 138

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  +        E   L   E +IL   M   G+   K QIF +++  +    ++N 
Sbjct: 139 DLVLDHNSCTLYKSSESISLSATEYKILTLFMEEPGRIFTKKQIFESVWSDY-YCADDNT 197

Query: 190 VESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  HIS+LR+KL +       + + R LGY  
Sbjct: 198 IMVHISRLREKLEDSPKNPVYIKTIRGLGYRF 229


>gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D     F + G  ++     E         + DV  ++  L       L
Sbjct: 15  LLLVEDDQDAADYLRKAFREAGHVVDHAADGEDGLAYALDGKYDVLVVDRML--PRRDGL 72

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            L   +R      P++ +S    +   +    +G DD + KP    E+       +    
Sbjct: 73  SLVAELRGRGDATPVLILSALGQVDDRVVGLRAGGDDYLPKPYAFTELLARVEALSRRGA 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G + +          G+  PL  RE R+LEYLM + G+ V +T +   ++
Sbjct: 133 PQAAETVYRVGDLELDRLAHRVARGGKEIPLQPREFRLLEYLMRHAGQVVTRTMLLENVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +    + NV++ H+S+LR K+        + + R  GY 
Sbjct: 193 D-YHFDPQTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYM 232


>gi|156936560|ref|YP_001440474.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534814|gb|ABU79638.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 230

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A       A    +   +                + D+  ++  L        E
Sbjct: 7   LVIEDDADAASVLEAYLRRENYDVAIAGDGRSGLEKAQRWKPDLVLLDVML--PVMNGTE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R  S VP+I ++        +     G DD V KP H  E++ARV A+ RR   +
Sbjct: 65  VLATLRRSSDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSCKA 124

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + E       +          D +       L   E  +L  LM +  +  ++  +  
Sbjct: 125 PVQDEILRWETLTVDTVAITATTDRDGVTTYLELTPTEFSLLTELMRHPTRPFSRQYLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               L +    E VV++HI  LR+KL N      + + R +GY  
Sbjct: 185 RC--LPESEALERVVDTHIYNLRRKLENSGLRGVLVNVRGIGYRF 227


>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRNKLRKVNFPIDHHLKTVYGVGYR 219


>gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 234

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + D         G +++ F S E        +  D+  ++  L        E+
Sbjct: 8   VVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSEPDIVILDIML--PDIDGYEI 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119
            + IR +S VP+I +S        +   + G DD ++KP         I   +  + R  
Sbjct: 66  CKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRRVKRDS 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  E   I+V  + R+    G    L  +E      L+    K + ++ I   I+G
Sbjct: 126 IKQDNVIEVFGIKVDFNQRNVFYNGTHIELSPKEFETFVLLLKESSKVLKRSYILERIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                 +E +V+  I +LRKK+        + +   LGY ++ 
Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLEE 227


>gi|257867576|ref|ZP_05647229.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257873905|ref|ZP_05653558.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257877663|ref|ZP_05657316.1| response regulator [Enterococcus casseliflavus EC20]
 gi|257801632|gb|EEV30562.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257808069|gb|EEV36891.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257811829|gb|EEV40649.1| response regulator [Enterococcus casseliflavus EC20]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G         +      ++  +    I   L       +
Sbjct: 6   ILMIEDNESVSEMMQMFFLNEGWEAAFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMDGM 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 66  MVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRRSE 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVA 169
           +            F    D                    L  +E  +L  L     +  +
Sbjct: 126 LVEKTTPEASDATFDVVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 186 REQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 235


>gi|229009025|ref|ZP_04166364.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228752195|gb|EEM01884.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 235

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   +     G         +    +    + D+  ++  L        
Sbjct: 4   IMIVEDDPKIAELLSSYIEKYGYQAIVIVDFQRVLDMFLQEKPDLVLLDINL--PSFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IRA S  P++ IS        +   ++G DD + KP H+  ++A++         
Sbjct: 62  YWCRQIRAISTCPILFISAREGTMDQVMALENGGDDYIPKPFHYEVVMAKIRSQLRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K+     E   + +F +    +++ +   + R E  +LE LM N  + V++  + +
Sbjct: 122 DYAPKIEERMIEQQGLTLFPERLVLQLRNQEIDVTRNEAILLEMLMKNYPRVVSREVLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   +  V++N +  + +++RKKL+       +++ R +GY +
Sbjct: 182 KLWD-SESYVDDNTLSVNTTRVRKKLQALGIQGAIETIRSVGYRL 225


>gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 246

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAGDGPDAVKLAKEFRPDVLVLDVML--PGFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA   +VP + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  LLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    GE   L   +  +L YLM N  + V+K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLRYLMENPRRVVSKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 D-YDFGGQANIVELYISYLRKKV-DAVHPPMIHTVRGAGYVI 242


>gi|324328962|gb|ADY24222.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 229

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G  +    S E           D+  ++  L        
Sbjct: 5   ILLVDDEPDILTFIEDSLVMEGYEVRSALSGEEALKKLD-NSVDLIILDVML--PDMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116
           ++   +R     P++ +S   S ++ ++    G DD ++KP        R +        
Sbjct: 62  KVCEKMRESYACPILFLSADSSERSRIEGLLIGGDDYISKPFSLKELKARIVANLRRTTD 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R+         G I +     +     E     ++E  +++ L  + G+ + K Q+F  
Sbjct: 122 LRMVDQKEFLRYGSILIDLQNYEIMNGKEKIHFTKKEYEVVKMLALHAGQVLTKEQLFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           I+G +D   + + V  HI K+R KL         + +   +GY 
Sbjct: 182 IWG-YDSESDVSTVVEHIKKIRTKLSVYDRENTYIQTVWGIGYK 224


>gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           +   D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANPPDLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD ++KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRANP 121

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               A+              +  +      +G+   L   E  IL+ L    G   ++  
Sbjct: 122 KEAAAQKETEAKVLERGLLVMDPERHTCTWRGDPVVLTVTEFLILQSLAQRPGVVKSRNA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 LMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVVDPDFEMIETLYGVGYRF 229


>gi|297194557|ref|ZP_06911955.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152324|gb|EFH31669.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 226

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++G        G  +    + E      +  R D+      L+  G   ++
Sbjct: 5   LLIEDDPSVREGVELGLRRRGHEVRTAATGESGLAALAEFRPDLLL--LDLMLPGMNGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R +R  SQ+P+I ++        +   ++G DD + KP     I AR+          
Sbjct: 63  VCRRVREDSQLPIIMLTARGDDFDVVIGLEAGADDYIVKPARTEVIEARIRAVLRRMEAP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + V   G      GE   L   E ++L +L A   +  ++ Q+   ++ 
Sbjct: 123 GGRPSVEFHGDLAVDRAGLTVAKNGERLALAPSEMKLLLHLSAAPEQVFSRQQLLEHVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                 +  +V++ + +LR K+ +       + + R  GY  
Sbjct: 182 EHSYHGDARLVDACVRRLRNKIEDIPGSPRYIQTLRGFGYRF 223


>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 224

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  +        S A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMI--PGIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +         V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 220

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      ++   D++ ++  L       L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++         +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3]
 gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3]
          Length = 241

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 87/229 (37%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +  S+         +   +    D+  ++  L   G+    
Sbjct: 8   LVVDDDKDIRELLAEYLTKNNFSVITAGDGIEMDAHLAQTEPDLIILDVML--PGDDGFI 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           L + IR  S VP+I ++        +   + G DD + KP   RE               
Sbjct: 66  LCQRIRQTSMVPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALLRRNHFV 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  V +        ++ +  ++     GEV PL   + ++L   + N    +++ +
Sbjct: 126 NEQSKKVVKDRYFLFANWKLDTQNQNLLNAAGEVMPLTGADYQLLSLFLDNLDNPISRDE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I  A++G    A  E  ++ H+S+LR+ L +       + + R  GY  
Sbjct: 186 ICRALHGRNAFA-NERGIDVHLSRLRQCLGDDAKFPKIIKTVRGKGYLF 233


>gi|103487528|ref|YP_617089.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977605|gb|ABF53756.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 236

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G     ++  E           D++  +          L
Sbjct: 5   IALVDDDRNILQSLSIALQAEGFVTRVYSDGEAALKPLIDNPPDLAVFDI--KMPRMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           EL R +R  SQ+P+I ++              G DD + KP   R ++AR+         
Sbjct: 63  ELLRRLREKSQLPVIFLTSKDDEIDEALGLAMGADDYIAKPFSQRLVIARIRAILRRVEL 122

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +        G + +          G+   L   E  ILE L +  G   ++
Sbjct: 123 NRAPPSEDDEPVAEPITRGRLTMDPARHKVSWDGKEVTLTVTEFLILETLASRPGIVRSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+  A Y   D  +++  ++SHI +LR+K R    GFD + +    GY  
Sbjct: 183 NQLMDAAY-QDDVYIDDRTIDSHIKRLRRKFREVDPGFDAIATLYGAGYRF 232


>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L DD   +         ++G  +    +      L    R  V+ ++           E
Sbjct: 1   MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVM--MPEMNGFE 58

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + + ++     + +I ++    +   +     G DD + KP    E+LAR+ A    +  
Sbjct: 59  VCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLRNQFP 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP +V    ++   Q +V  L   E  +L++L+ N G  ++K++I   ++G 
Sbjct: 119 DLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E+N+VE +I  LR+KL++K     + + R +GY +D
Sbjct: 178 YDFGGEDNIVEVYIRSLREKLKDK-EHRVIRTLRGVGYRVD 217


>gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +  I    +DG  +           +  +   D+  ++  L       L
Sbjct: 4   ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILL--PQMNGL 61

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILA 110
           ++ + IR       P++ ++   S +  +   D+G DD ++KP    E            
Sbjct: 62  DVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLRRK 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +   + ++ N       +++    +      E   L   E R+L+  M +  K   +
Sbjct: 122 SEISKSVQSQMKNEVYRYSVLKLDDYQKVAYCNDEELNLTSTEYRLLQLFMRSPKKVFMR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++   ++G+ +  +  NVV+ +++ LR+K+        + +   +GY +
Sbjct: 182 SELLDEVWGI-NFDIGSNVVDVYVNYLRRKIEKHSPMKLIHTVIGMGYVL 230


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +    +  D+   +E     E   +L      D+  ++  L    G  +
Sbjct: 3   LLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGFSI 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R  + V  +   D    + T          V        +   R +       
Sbjct: 62  LKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSGNM 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++      I +F   ++ +V G+   L   +  +LEYL+ N G  + + QIF  ++G 
Sbjct: 122 TIDHTLRYRGIELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F+      +VE +I  LRKKL        + + R +GY +
Sbjct: 181 FESDTTIAIVEVYIHHLRKKLEPFGYHKDIQNVRGIGYLL 220


>gi|29828937|ref|NP_823571.1| two-component system response regulator for high-affinity potassium
           transport system [Streptomyces avermitilis MA-4680]
 gi|29606042|dbj|BAC70106.1| putative two-component system response regulator for high-affinity
           potassium transport system [Streptomyces avermitilis
           MA-4680]
          Length = 238

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++  +       + ++   DV  ++  L       +E
Sbjct: 16  LVVDDEPQIVRALVINLKARKYEVDSAHDGATALHVAAARHPDVVVLDLGL--PDMDGVE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  ++VP++ +S   S    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 74  VIRGLRGWTRVPILVLSARHSSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPT 133

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   ET    V    +     G    L   E  +LE L+ N G+ V + Q+   +
Sbjct: 134 GGGEDDVIVETEDFTVDLAAKKVNRDGRDVRLTPTEWHLLEVLVRNTGRLVGQKQLLQEV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 194 WGPS-YGTETNYLRVYMAQLRRKLESDPSHPKHFITEPGMGYRFE 237


>gi|154246784|ref|YP_001417742.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160869|gb|ABS68085.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 232

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           +   D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  + +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 62  ELLRRLRQKTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGA 121

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  A               R+  +      +GE   L   E  IL+ L    G   ++ 
Sbjct: 122 KDGAAPRETDSAKVLERGNLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK ++    F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKSVDDSFEMIETLYGVGYRF 230


>gi|322436892|ref|YP_004219104.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164619|gb|ADW70324.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 233

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    ++E   +L  S   D+  ++  L   G   +
Sbjct: 9   ILVVEDERKISEAVTAGLKSAGYEVLAARTVEDGLFLLHSQHPDMIVLDLGL--PGMSGM 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P++ ++   SL   +   D G DD + KP    E+ AR+ AI RR +
Sbjct: 67  EMLRQLRAMGIMIPVLILTSNNSLDDRVAALDLGADDFLLKPFSTAELNARMRAISRRGR 126

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     +     +  + R     G    L  RE  ++ Y + NRG+ V++  +   ++ 
Sbjct: 127 PTQVAQLSVADLEINLETRTVVRGGMQLELTAREFDLIVYFVGNRGRTVSREMLARDVWH 186

Query: 180 LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   +NV++  I++LR+KL +      + + R +G+ +
Sbjct: 187 ETSRFTPIDNVIDVQITRLRRKLDDPFPQKLLRTVRGVGFIL 228


>gi|295707307|ref|YP_003600382.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804966|gb|ADF42032.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  ++          +    +  ++ ++  L   G    E
Sbjct: 10  LLIDDEPTILQFLSLGLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVML--PGMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121
           + R+++    + +I ++    +   +     G DD + KP    E +    A I  +   
Sbjct: 68  VCRLLKKMGNIAVIMLTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARIRNQFPN 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    GP ++    ++ +    +  L   E  +L++L+ N G  ++K+ I   ++G +
Sbjct: 128 LLDEVSIGPFKIDDRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   EEN+VE +I  LR+KL++      + + R +GY ID
Sbjct: 187 DFGGEENIVEVYIRSLREKLQD-YSRTVIRTLRGVGYRID 225


>gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
 gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++   +      +       +   D+  +   ++      +
Sbjct: 3   ILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAY-PDIDMVILDIMMPRLDGI 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR  +   P++ +S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 62  SVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRTS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQI 173
                +E+            +   +          L   E  IL  L ++  K  +  +I
Sbjct: 122 ALTKESESAEEITIGPLLINKGSHQVTTLDGLEIQLTVLEFGILFLLASHPNKVFSADEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+     G   +++   +GY I+
Sbjct: 182 FETVW-QQESIVSTKTVMVHVSHLRDKIAEATGGDKVIETVWGVGYKIE 229


>gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            +L++D + + +        +G ++   +       + + +   D+  ++  L       
Sbjct: 4   LLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGL--PDLDG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIY 116
           LE+ R +R    + P++ ++        +   D+G DD V KP      +  +  +    
Sbjct: 62  LEVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRRS 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  + S +  +   + +    R     GE   L  +E  +L  L+   G  V +  +   
Sbjct: 122 QATEESGDSYDVNGVTLDVSARRAYADGEELSLSAKEYDLLTVLVRESGSVVTRDDLMRE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           ++G  +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 182 VWGA-EWWGSTKTLDMHISWLRRKLGDDATDPRRITTVRGVGFRFE 226


>gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 233

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +E     E            +  ++  L        
Sbjct: 5   ILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLML--PVMNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +  +  + +I ++    +   +   + G DD + KP   RE+LAR+ ++ RRL  
Sbjct: 63  DICKKL-ENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLVRRLNK 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +            + +    R   ++  +  L   E  +L  L++N G   ++ Q+ +
Sbjct: 122 TIDEKKDIGVITINDLNINKKKRTVSIKNVLVELTPMEFDLLYLLLSNPGIVYSREQLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+ + D       V++HI ++RKKL +    D + +   +GY 
Sbjct: 182 IIWNM-DYVGGTRTVDTHIQRVRKKLGDSY-QDLIQTVYGIGYK 223


>gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 18/227 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D +++ D         G  +    + +       + R     ++  L       L+L
Sbjct: 20  VVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTDRPTAVVLDIGL--PDMDGLDL 77

Query: 64  PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
            R +R      P++ ++        +   + G DD + KP + RE++AR+ A+ RR    
Sbjct: 78  CRRLREAGDWTPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRRTGGP 137

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +V   R + G  RV+ +    E       L   E  +L +L  + G+   + 
Sbjct: 138 AAAGGTTLQVGRVRIDPGRRRVWVEPGPGEPAPRPVDLTATEFDLLVHLARHPGRVFERA 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + S+++G +  A     V+ H++ LR KL       P+ + R +GY
Sbjct: 198 GLLSSVWG-YASAAGARTVDVHVAALRAKLGTAS---PIRTVRGVGY 240


>gi|238758418|ref|ZP_04619595.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
 gi|238703322|gb|EEP95862.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDTKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223


>gi|224282831|ref|ZP_03646153.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +          +G S    +            R D+  ++  L       LE  
Sbjct: 2   VEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIML--PVMDGLEAT 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---------AI 115
           + I A   VP++ ++   +    +    +G DD + KP   RE++AR            +
Sbjct: 60  KRIVADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERAKV 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   +      G + +    R   V GE   L   E  +L  L       + + ++  
Sbjct: 120 IAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 180 EVWDWVDASG-TRTVDSHVKALRHKL----GSETIRTVHGVGYAFE 220


>gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G        G +++     E       S +  +  ++  L    +   
Sbjct: 3   ILLVEDDEQIGSGVQRGLRHSGFAVDWVRDGETASTALRSTQYGLILLDLGL--PKQDGS 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  +   P+I ++   ++   +   D+G DD + KP    E+LAR+  + RR  
Sbjct: 61  TVLARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQT 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S          R+        +  E  P+  RE  ILE L+      V + Q+   +YG
Sbjct: 121 GSVQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++E VE N V+ HI  LR+KL    G D + + R +GY I
Sbjct: 181 -WNEEVESNTVQVHIHHLRQKL----GTDVIVTVRGIGYRI 216


>gi|320450181|ref|YP_004202277.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
 gi|320150350|gb|ADW21728.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
          Length = 220

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +    S E               ++  L    E   
Sbjct: 5   LLLVEDDPDLGRTVTQALEEHGFQVVWATSQEEAWEALWDVPFQALVLDVRLPEGEEAGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R       I                   +D + KP    E++AR+ A+ RR +V
Sbjct: 65  HLARTLREAGFTQPILFLTAKDALDDRLHGLELGEDYLTKPFALSELVARIRALLRRGEV 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E G + +  + R          L  +E ++LE L+ NRG+  +K +I   I+G  
Sbjct: 125 RPRRVEVGEVVLEVEARRVLKGSLPIGLTAKEYQVLELLVLNRGRVFSKDEILERIWG-P 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
               E N+VE ++  LRKKL      + +++ R LGY 
Sbjct: 184 GYEGESNLVEVYVKNLRKKLGE----EVIETIRGLGYR 217


>gi|270293204|ref|ZP_06199415.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270279183|gb|EFA25029.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L  + G  +           L   +  ++  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKLLSEWGFEVILVEDFMEVLTLFVQSEPNLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGY 220


>gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 234

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L G +G  +    +      +       +  I+          L
Sbjct: 8   ILVVDDDHDIVNAIAKLLGKEGYIIYKAYNGLEAIDMLMQHEIQLILIDVM--MPKLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I +S        +     G DD + KP +  E++ARV +  RR   
Sbjct: 66  SAMMKIREKNNIPIIVLSAKSEDSDKILGLSMGADDYITKPYNPMELVARVNSNLRRYLS 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +S+N+   G + +  D R   + GE       E +I E LM N G+  +   I
Sbjct: 126 LGAAGSTMSDNKLRIGGLELDKDARQITLDGEPVKFTPTEYKITELLMENAGRTFSAEDI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +S I+     +VE N V  HI  +R+K+  N      +     +GY ++ 
Sbjct: 186 YSRIWNEDSYSVE-NTVMVHIRHIREKIEINPSEPRYLKVVWGIGYKMEK 234


>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 3   LLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|153206919|ref|ZP_01945737.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212219514|ref|YP_002306301.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
 gi|120576992|gb|EAX33616.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013776|gb|ACJ21156.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
          Length = 245

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G            + +      D+  ++      G+  L
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIM--MPGDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA+S +P++ ++        +   + G DD ++KP + RE+LARV AI RR + 
Sbjct: 65  TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVA 169
                                  +               L   E  +L  L+    + ++
Sbjct: 125 GGGSLNGIGTNERVIYEFVGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   +    +    +  ++  IS+LR KL  +      + + R  GY +
Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|78223640|ref|YP_385387.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78194895|gb|ABB32662.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 233

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++            SL    +         +   DV  ++  L       +
Sbjct: 10  ILIVDDELAIRRFLCTALDTGEFSLHQAENGHTALAAAVATMPDVILLDLGL--PDMDGV 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I +S        +   D+G DD + KP    E++AR+ A  RR   
Sbjct: 68  EVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVAELVARIRAALRRALQ 127

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        V    R   V G    L   E  +L  L+ + GK +  +QI   I+G
Sbjct: 128 QVPEPIFRSGDLEVDLARRRVTVDGSESQLTPTEYELLRLLVVHAGKVLTHSQILRQIWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     + +V+  +IS LR+K+  +      + ++  +GY +
Sbjct: 188 VSHLE-QPHVLRVNISNLRRKIEMDPSRPRHILTEPGVGYRL 228


>gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 234

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 89/230 (38%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +         ++G ++  F          +    D++  +          L
Sbjct: 4   IALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHLTETPPDLAIFDI--KMPRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R  S +P+I ++            D G DD + KP  H+ +  R+ A+ RR + 
Sbjct: 62  ELLRRVRQSSNLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLRRAQA 121

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +   E G + +  +      QG+   L   E  IL  L    G   ++
Sbjct: 122 DPAGAEGGEGNEHKVIERGSLVLDPNRHACTWQGKPVRLTVTEFLILHALANRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +  A Y      V++  ++SHI ++RKK R+    FD +++   +GY 
Sbjct: 182 DSLMDAAYD-DQVYVDDRTIDSHIKRIRKKFRDVDDTFDSIETLYGVGYR 230


>gi|325291487|ref|YP_004277351.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325059340|gb|ADY63031.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 249

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 84/238 (35%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 11  IALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASS 128

Query: 119 ---------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                                  E G + +  +      +GE   L   E  IL  L   
Sbjct: 129 REASAATGGSTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAQR 188

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G   ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 189 PGVVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKLVDGDFDMIETLYGVGYRF 245


>gi|322392284|ref|ZP_08065745.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321144819|gb|EFX40219.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDPVIRQQVGKMLSEWGFEVVMVEDFMEVLTLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D  V+G+   L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHVEGQAITLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEERGLVGFIETKKGIGY 220


>gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L +D   +    +    +DG S++          + S    D   ++           
Sbjct: 3   IFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIM--MPKADGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119
            + R +R      P++ ++   ++   +   DSG +D + KP    E+ AR+   +    
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++N      + +          G+   L  +E  +LEY M N+G+ +++  I   ++ 
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     N+V+ +IS LRKK+        + + R  G+ +
Sbjct: 180 NFDYEGGTNIVDVYISYLRKKIDGGYDKKLIHTVRGRGFIM 220


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 23  LVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVML--PDMDGLA 80

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R  S VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 81  VLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 140

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+E+  +        D  +     +   L   E  +L +LM N  + ++K QI   +
Sbjct: 141 ASVRSESTLVVGDLVLDEDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 201 W-NYDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 241


>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
 gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G  +    + +    +       +  ++          L
Sbjct: 4   ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVM--MPEMDGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ + +   +   P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 62  EVCKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRRIQ 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            I     V   +   GPI +  D     V  +   L   E  IL  L +  G+  +   I
Sbjct: 122 NIQANSSVDTAKTIIGPIVIDKDQHIVTVNEKELHLTTSEFDILYLLASEPGRVFSSEYI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 182 FEKIWQEKAL-GASKTVMVHISNLRDKLRVAMAGENVIKTIWGVGYKIE 229


>gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC
           BAA-895]
 gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895]
          Length = 219

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTL--PGMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R    + P++ ++   +L   ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  DILREWREQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + +        + G+  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N +E H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEDVSSNTIEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|17986776|ref|NP_539410.1| transcriptional regulatory protein OMPR [Brucella melitensis bv. 1
           str. 16M]
 gi|23502389|ref|NP_698516.1| transcriptional regulatory protein OmpR [Brucella suis 1330]
 gi|62290408|ref|YP_222201.1| OmpR transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82700330|ref|YP_414904.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148559596|ref|YP_001259399.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
 gi|161619466|ref|YP_001593353.1| protein petR [Brucella canis ATCC 23365]
 gi|163843775|ref|YP_001628179.1| protein petR [Brucella suis ATCC 23445]
 gi|225627963|ref|ZP_03785999.1| Protein petR [Brucella ceti str. Cudo]
 gi|225852998|ref|YP_002733231.1| protein PetR [Brucella melitensis ATCC 23457]
 gi|237815913|ref|ZP_04594910.1| Protein petR [Brucella abortus str. 2308 A]
 gi|254694197|ref|ZP_05156025.1| Protein petR [Brucella abortus bv. 3 str. Tulya]
 gi|254697850|ref|ZP_05159678.1| Protein petR [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702239|ref|ZP_05164067.1| Protein petR [Brucella suis bv. 5 str. 513]
 gi|254704774|ref|ZP_05166602.1| Protein petR [Brucella suis bv. 3 str. 686]
 gi|254708188|ref|ZP_05170016.1| Protein petR [Brucella pinnipedialis M163/99/10]
 gi|254710558|ref|ZP_05172369.1| Protein petR [Brucella pinnipedialis B2/94]
 gi|254714741|ref|ZP_05176552.1| Protein petR [Brucella ceti M644/93/1]
 gi|254717801|ref|ZP_05179612.1| Protein petR [Brucella ceti M13/05/1]
 gi|254730741|ref|ZP_05189319.1| Protein petR [Brucella abortus bv. 4 str. 292]
 gi|256032052|ref|ZP_05445666.1| Protein petR [Brucella pinnipedialis M292/94/1]
 gi|256045144|ref|ZP_05448043.1| Protein petR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061575|ref|ZP_05451716.1| Protein petR [Brucella neotomae 5K33]
 gi|256114079|ref|ZP_05454849.1| Protein petR [Brucella melitensis bv. 3 str. Ether]
 gi|256160248|ref|ZP_05457942.1| Protein petR [Brucella ceti M490/95/1]
 gi|256255454|ref|ZP_05460990.1| Protein petR [Brucella ceti B1/94]
 gi|256263520|ref|ZP_05466052.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369937|ref|YP_003107448.1| two-components response regulator, OmpR family [Brucella microti
           CCM 4915]
 gi|260169187|ref|ZP_05755998.1| two-components response regulator, OmpR family protein [Brucella
           sp. F5/99]
 gi|260546944|ref|ZP_05822683.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260565260|ref|ZP_05835744.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260565984|ref|ZP_05836454.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260758460|ref|ZP_05870808.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762285|ref|ZP_05874628.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261214502|ref|ZP_05928783.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219648|ref|ZP_05933929.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261222659|ref|ZP_05936940.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315692|ref|ZP_05954889.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261318130|ref|ZP_05957327.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261322536|ref|ZP_05961733.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261325581|ref|ZP_05964778.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261752810|ref|ZP_05996519.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755469|ref|ZP_05999178.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261758700|ref|ZP_06002409.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265989161|ref|ZP_06101718.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265991576|ref|ZP_06104133.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995412|ref|ZP_06107969.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265998623|ref|ZP_06111180.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|306843132|ref|ZP_07475753.1| Protein petR [Brucella sp. BO2]
 gi|17982405|gb|AAL51674.1| transcriptional regulatory protein ompr [Brucella melitensis bv. 1
           str. 16M]
 gi|23348373|gb|AAN30431.1| transcriptional regulatory protein OmpR, putative [Brucella suis
           1330]
 gi|62196540|gb|AAX74840.1| hypothetical transcriptional regulatory protein OmpR [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616431|emb|CAJ11494.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148370853|gb|ABQ60832.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
 gi|161336277|gb|ABX62582.1| Protein petR [Brucella canis ATCC 23365]
 gi|163674498|gb|ABY38609.1| Protein petR [Brucella suis ATCC 23445]
 gi|225617126|gb|EEH14172.1| Protein petR [Brucella ceti str. Cudo]
 gi|225641363|gb|ACO01277.1| Protein petR [Brucella melitensis ATCC 23457]
 gi|237789211|gb|EEP63422.1| Protein petR [Brucella abortus str. 2308 A]
 gi|256000100|gb|ACU48499.1| two-components response regulator, OmpR family [Brucella microti
           CCM 4915]
 gi|260095994|gb|EEW79871.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260151328|gb|EEW86422.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155502|gb|EEW90582.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260668778|gb|EEX55718.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260672717|gb|EEX59538.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260916109|gb|EEX82970.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260921243|gb|EEX87896.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260924737|gb|EEX91305.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261295226|gb|EEX98722.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261297353|gb|EEY00850.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261301561|gb|EEY05058.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304718|gb|EEY08215.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261738684|gb|EEY26680.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261742563|gb|EEY30489.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745222|gb|EEY33148.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262553247|gb|EEZ09081.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|262766525|gb|EEZ12314.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263002360|gb|EEZ14935.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093550|gb|EEZ17575.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661358|gb|EEZ31619.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|306286682|gb|EFM58238.1| Protein petR [Brucella sp. BO2]
 gi|326409538|gb|ADZ66603.1| protein PetR [Brucella melitensis M28]
 gi|326539246|gb|ADZ87461.1| protein petR [Brucella melitensis M5-90]
          Length = 241

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 22  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGV 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 80  SLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 139

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       G+ + + ++    
Sbjct: 140 PAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGETIPRHELT--- 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 197 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 238


>gi|15902000|ref|NP_346604.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656998|ref|ZP_01407803.1| hypothetical protein SpneT_02001766 [Streptococcus pneumoniae
           TIGR4]
 gi|148984494|ref|ZP_01817782.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|149003054|ref|ZP_01827963.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007763|ref|ZP_01831372.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012835|ref|ZP_01833780.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|168484352|ref|ZP_02709304.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486300|ref|ZP_02710808.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1087-00]
 gi|182685131|ref|YP_001836878.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225855687|ref|YP_002737199.1| DNA-binding response regulator [Streptococcus pneumoniae JJA]
 gi|225862009|ref|YP_002743518.1| DNA-binding response regulator [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650484|ref|ZP_04524736.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237820993|ref|ZP_04596838.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229897|ref|ZP_06963578.1| DNA-binding response regulator [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255665|ref|ZP_06979251.1| DNA-binding response regulator [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501706|ref|YP_003723646.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259679|ref|ZP_07345655.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262146|ref|ZP_07348091.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264581|ref|ZP_07350500.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303266110|ref|ZP_07352004.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303270013|ref|ZP_07355741.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307128458|ref|YP_003880489.1| DNA-binding response regulator [Streptococcus pneumoniae 670-6B]
 gi|5830532|emb|CAB54574.1| response regulator [Streptococcus pneumoniae]
 gi|14973704|gb|AAK76244.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|113367007|gb|ABI34555.1| response regulator [Streptococcus pneumoniae]
 gi|147758795|gb|EDK65791.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147760758|gb|EDK67730.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763266|gb|EDK70205.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147923271|gb|EDK74385.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|172042406|gb|EDT50452.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|182630465|gb|ACB91413.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|183570692|gb|EDT91220.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1087-00]
 gi|225723874|gb|ACO19727.1| DNA-binding response regulator [Streptococcus pneumoniae JJA]
 gi|225726763|gb|ACO22614.1| DNA-binding response regulator [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237301|gb|ADI68432.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301800929|emb|CBW33588.1| putative two-component system, response regulator [Streptococcus
           pneumoniae OXC141]
 gi|302636786|gb|EFL67276.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639231|gb|EFL69690.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640457|gb|EFL70876.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302644414|gb|EFL74667.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302645951|gb|EFL76179.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|306485520|gb|ADM92389.1| DNA-binding response regulator [Streptococcus pneumoniae 670-6B]
 gi|327388936|gb|EGE87284.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332198816|gb|EGJ12898.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 217

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  ++++G  A   ++G  +      +            +  ++       +   
Sbjct: 3   ILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMVLDLM--MPRKSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I     +P+I +S      T    FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINQKHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V         + E   L  +E  +L+ L+ ++ + +++ QI   I    
Sbjct: 121 IEDLWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEISKDV 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + + +GY I
Sbjct: 181 ADLPCDRVVDVYIRTLRKKL----ALDCIVTVKNVGYKI 215


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 25  LVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIML--PDMDGLA 82

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 83  VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 142

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 143 AAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 203 WS-YDFGGQANVVELYISYLRRKI-DAGRPPMIHTRRGAGYLI 243


>gi|296112612|ref|YP_003626550.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920306|gb|ADG60657.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560872|gb|EGE11237.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563890|gb|EGE14141.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326566562|gb|EGE16708.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566899|gb|EGE17038.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569771|gb|EGE19821.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570802|gb|EGE20827.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326575098|gb|EGE25026.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326576816|gb|EGE26723.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326577731|gb|EGE27607.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 237

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +                + D+  ++  L   G   L
Sbjct: 11  ILIVEDDERLAMLTQDYLRKNGLDVAIETDGARAIRRIIGEQPDLVVLDVML--PGSDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +RAH Q P++ ++        +   + G DD V KP+  R +LAR       +  
Sbjct: 69  AVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 128

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S  R E G + + + GR   +  E+      E  +L  L +N G+ +++  IF  
Sbjct: 129 VPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 189 LRGI-EYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGYLFVKEGN 237


>gi|311744153|ref|ZP_07717958.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312508|gb|EFQ82420.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 219

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +               S   D+  ++  L   G    
Sbjct: 4   ILIVEDEERIASFVAKGLRAHGFTPTVVADGITGIDYAVSGEFDLVVLDIGL--PGADGF 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   + R    +P+I ++   S+  T+   + G  D ++KP    E+LARV    R   
Sbjct: 62  EVLERLRRERPGLPVIVLTARDSVTDTVAALEGGAADYMSKPFRFDELLARVRLRLRVAS 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G +R+    R   V G    L  RE  + E LM +RG+ +++ Q+ S ++
Sbjct: 122 EPAADDAVEVGDVRLDLRTRRTTVAGREVDLSAREFTLAEVLMRHRGQVLSREQLLSQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D     NVV+ ++  LRKKL    G D V + R +GY +D
Sbjct: 182 G-YDFDPGSNVVDVYVGYLRKKL----GADLVSTVRGVGYRVD 219


>gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
 gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
          Length = 239

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A+S +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESVVEFGDFRLNLGTREMFRDDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|229169182|ref|ZP_04296896.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228614248|gb|EEK71359.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 235

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAEILEEHLERYGYQSFRVSDLRHIKDEFVKVSPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L   ++      + +F      E +G+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYALAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEESGIKNAIVTKRGYGYALLTEW 229


>gi|83748410|ref|ZP_00945433.1| CzcR [Ralstonia solanacearum UW551]
 gi|83724926|gb|EAP72081.1| CzcR [Ralstonia solanacearum UW551]
          Length = 248

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 27  LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR  +
Sbjct: 85  QVIRELRRRKATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGPM 144

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +         + +  R     G+   L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 145 RESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWDV 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 205 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 244


>gi|15608167|ref|NP_215543.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Rv]
 gi|15840457|ref|NP_335494.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis
           CDC1551]
 gi|31792218|ref|NP_854711.1| transcriptional regulatory protein KdpE [Mycobacterium bovis
           AF2122/97]
 gi|121636956|ref|YP_977179.1| putative transcriptional regulatory protein kdpE [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148660809|ref|YP_001282332.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Ra]
 gi|148822236|ref|YP_001286990.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           F11]
 gi|215402842|ref|ZP_03415023.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|215410630|ref|ZP_03419438.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426309|ref|ZP_03424228.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T92]
 gi|215429888|ref|ZP_03427807.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|218752699|ref|ZP_03531495.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|219556895|ref|ZP_03535971.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T17]
 gi|224989428|ref|YP_002644115.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253799943|ref|YP_003032944.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           1435]
 gi|254231318|ref|ZP_04924645.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           C]
 gi|254550012|ref|ZP_05140459.1| transcriptional regulator kdpE [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185938|ref|ZP_05763412.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|260204245|ref|ZP_05771736.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289446608|ref|ZP_06436352.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|289555191|ref|ZP_06444401.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605]
 gi|289569007|ref|ZP_06449234.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17]
 gi|289573667|ref|ZP_06453894.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289744763|ref|ZP_06504141.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|289749559|ref|ZP_06508937.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92]
 gi|289753088|ref|ZP_06512466.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|289761163|ref|ZP_06520541.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|297633554|ref|ZP_06951334.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           4207]
 gi|297730539|ref|ZP_06959657.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           R506]
 gi|298524524|ref|ZP_07011933.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775163|ref|ZP_07413500.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001]
 gi|306781922|ref|ZP_07420259.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002]
 gi|306783723|ref|ZP_07422045.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003]
 gi|306788078|ref|ZP_07426400.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004]
 gi|306792411|ref|ZP_07430713.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005]
 gi|306796814|ref|ZP_07435116.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006]
 gi|306802700|ref|ZP_07439368.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008]
 gi|306806879|ref|ZP_07443547.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007]
 gi|306967079|ref|ZP_07479740.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009]
 gi|306971270|ref|ZP_07483931.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010]
 gi|307078999|ref|ZP_07488169.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011]
 gi|307083559|ref|ZP_07492672.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012]
 gi|313657868|ref|ZP_07814748.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           V2475]
 gi|1870001|emb|CAB06852.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium
           tuberculosis H37Rv]
 gi|13880629|gb|AAK45308.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis
           CDC1551]
 gi|31617806|emb|CAD93915.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium
           bovis AF2122/97]
 gi|121492603|emb|CAL71071.1| Probable transcriptional regulatory protein kdpE [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124600377|gb|EAY59387.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           C]
 gi|148504961|gb|ABQ72770.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Ra]
 gi|148720763|gb|ABR05388.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           F11]
 gi|224772541|dbj|BAH25347.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253321446|gb|ACT26049.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           1435]
 gi|289419566|gb|EFD16767.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|289439823|gb|EFD22316.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605]
 gi|289538098|gb|EFD42676.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289542761|gb|EFD46409.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17]
 gi|289685291|gb|EFD52779.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|289690146|gb|EFD57575.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92]
 gi|289693675|gb|EFD61104.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|289708669|gb|EFD72685.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|298494318|gb|EFI29612.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216312|gb|EFO75711.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001]
 gi|308325376|gb|EFP14227.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002]
 gi|308331505|gb|EFP20356.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003]
 gi|308335311|gb|EFP24162.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004]
 gi|308339119|gb|EFP27970.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005]
 gi|308342791|gb|EFP31642.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006]
 gi|308346700|gb|EFP35551.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007]
 gi|308350615|gb|EFP39466.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008]
 gi|308355248|gb|EFP44099.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009]
 gi|308359203|gb|EFP48054.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010]
 gi|308363105|gb|EFP51956.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011]
 gi|308366769|gb|EFP55620.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012]
 gi|323720527|gb|EGB29609.1| transcriptional regulator kdpE [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459686|gb|AEB05109.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           4207]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   ++        +    DV  ++  L       ++
Sbjct: 5   LVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGL--PDMSGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        +   D+G DD V KP    E      A V      
Sbjct: 63  VLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     ET    V   G+     G    L   E  +LE L  NRGK V + ++   ++
Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G    A E + +  ++++LR+KL +       + ++  +GY  +
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFE 225


>gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +    D  +   QG +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRSLQVADLSYDLDTLEVTRQGRMLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRL 220


>gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
 gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E       + + D+  ++          +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAV-NDKIDLILLDVM--MPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
           E  + +R + + P++ ++        +   + G DD + KP   RE+      + R  + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   +++  E   +R++   ++     ++  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKNTKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGQVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|256824206|ref|YP_003148166.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687599|gb|ACV05401.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 12/223 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++++    +    G ++   +              DV+ ++          + 
Sbjct: 11  LLVEDDEMLRETTALVLERQGFTVSTASDGVEGLDALRRETFDVAVVDVM--MPRMDGIT 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAIYR 117
             R +R  S +P++ ++        L  F  GVDD V KP        R           
Sbjct: 69  FARKVREGSDLPIVLLTARDLPHDQLAGFQVGVDDYVTKPFDGEVLAARLRAVLRRVDTV 128

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +        + V  DG   +  GE   L   E R+LE L+ +RG+ +++ Q+   +
Sbjct: 129 PEEPATATIRVADLSVNRDGMVVKRAGETISLSATEFRLLEVLLDHRGRVLSRHQLLEMV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +     + +VVE  + +LR+K+    G + + + R  GY +
Sbjct: 189 WDIGSW-GDTHVVEVTVQRLRRKI----GAERIVTVRGAGYKL 226


>gi|169832685|ref|YP_001695550.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|168995187|gb|ACA35799.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
          Length = 217

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  ++++G  A   ++G  +      +            +  ++       +   
Sbjct: 3   ILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKIQDLPIHLMVLDLM--MPRKSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I     +P+I +S      T    FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINQKHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V         + E   L  +E  +L+ L+ ++ + +++ QI   I    
Sbjct: 121 IEDIWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEISKDV 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + VV+ +I  LRKKL      D + + + +GY I
Sbjct: 181 ADLPCDRVVDVYIRTLRKKL----ALDCIVTVKNVGYKI 215


>gi|148253267|ref|YP_001237852.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405440|gb|ABQ33946.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 14/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S        +    D+  ++      GE   
Sbjct: 23  LLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVM--MPGESGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++      + ++    G DD V KP   RE+  R+  I +R   
Sbjct: 81  DLARFIRTQSSVPIVMLTARAEPDSRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAP 140

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +   GP        + +   E+  L  RER +L  L   RG+ V +  +   
Sbjct: 141 PPAEEVIEQIAFGPFVYHLARGELKQGEEIVHLTDREREMLRILANARGETVPRGAL--- 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                +  V E  V+  I++LR+KL  +      + + R +GY +
Sbjct: 198 ---TGNGTVNERAVDVQINRLRRKLEIDPANPLFLQAVRGIGYRL 239


>gi|148260878|ref|YP_001235005.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326404273|ref|YP_004284355.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
 gi|146402559|gb|ABQ31086.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325051135|dbj|BAJ81473.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
          Length = 233

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   + +        +G ++  +   E       +   D++ ++          +
Sbjct: 5   IALVDDDRHILESVQMTLEQEGFAVRTYTDGESALQGLMTRPADLAVLDI--KMPRMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILARV 112
           EL + +RA S +P+I ++        L     G DD + KP   R               
Sbjct: 63  ELLQRLRARSAMPVIFLTSKDDELDELMGLRLGADDYITKPFSQRLLLERIRALLRRNEA 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G + +         +G+   L   E  +++ L A  G   ++ Q
Sbjct: 123 SRAEGSGAAPTGVIGRGDLTLDETKHQCLWKGQDIQLTVTEFLLVKALAARPGMVKSRDQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  A YG  +  V++  ++SHI +LR+K R     FD +++   +GY 
Sbjct: 183 LIDAAYGE-NVYVDDRTIDSHIKRLRRKFRAVDDEFDQIETLYGIGYR 229


>gi|94272958|ref|ZP_01292211.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93449961|gb|EAT01377.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G  +E        E L ++   D+  ++  L       L
Sbjct: 6   ILVVDDDPSMLRLCQVVIQRQGWLVESAQDGGSAEGLLATRSFDLVVLDLNL--PDGDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +     VP + ++        +  F+ G  D + KP H  E++ R+  +    + 
Sbjct: 64  DIGRRLYQQG-VPFLLMTARDRPNERVAGFEVGAADYLTKPFHPNELIHRIRRVLGLRES 122

Query: 122 SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++                  +  G    L   E R+L  L+A  G+ V + ++   
Sbjct: 123 PTPASDRHHRLGAWLFDPEGGLLSDHNGRRVELTTGESRLLATLLAAGGRVVDRDRLLQT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    + A     V+  IS+LRKKL +       + +   +GY +
Sbjct: 183 V-ARSEGAGHYRTVDVLISRLRKKLEDDPRHPALIITVTGIGYRL 226


>gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
 gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 89/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  +          +  +S R D+  ++  L        
Sbjct: 3   LLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVML--PHLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++ R +R+     P+I ++    ++  +   + G DD + KP    E    +  V    +
Sbjct: 61  QVLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S  R     + +    R      E   L  +E  +LE  M   G+ ++++QI S++
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + + +   + NV++  + +LR K+        + ++R +GY ++ 
Sbjct: 181 WDM-NFDSDTNVIDVAVRRLRNKVDKPFEPKLIHTERGMGYVLEE 224


>gi|90422176|ref|YP_530546.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104190|gb|ABD86227.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 242

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD  L++   ++ F + G ++    + +    L +  R D   ++  L       
Sbjct: 13  VIAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRL--PDGDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IRA S VP+I I+        +   + G DD V KP   RE+LARV  + RR +
Sbjct: 71  LTLMRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTR 130

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQI 173
              +      +R F+                    L   E  +L  L+ + G+ +++  +
Sbjct: 131 AVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +    +    +  V+  + +LR+K+  +      + ++  LGY  
Sbjct: 191 LD-VMSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVF 237


>gi|311109256|ref|YP_003982109.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
 gi|310763945|gb|ADP19394.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
          Length = 232

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D               G +++         +L      D   ++  L   G+   
Sbjct: 3   LLVVEDEPKTASHIKRGLTGLGFTVDLSGDGSEGLFLAIEHDYDAIILDVML--PGQDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            L R +RA    P++ +S   S+   +     G DD + KP    E    +  +      
Sbjct: 61  ALLRQLRARKPTPVLMLSARGSVDERVKGLRQGADDYLGKPFSFIELAARIQALLRRRVG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G ++V    R     G+   L  +E  +L  L  ++G+ ++K  I   I+
Sbjct: 121 TGGDSTWLQVGDLQVDLLARRATRAGQRLNLTAKEFALLSLLARHQGEILSKMMISEQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAMRRLRLKVDAPYDTKLLHTVRGMGYLLE 222


>gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
 gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
          Length = 239

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|170740242|ref|YP_001768897.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194516|gb|ACA16463.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 240

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD    +          G  ++  +       L ++   D+  ++       E  L
Sbjct: 8   IYVVDDEPDARAMVGDYLRLHGFEVDLCDGGASLRRLLAARPPDLIVLDLN--MPDEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R ++A SQ+P+I ++   S    +   + G DD + KP   RE++ARV ++ RR   
Sbjct: 66  SIVRDLKARSQIPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAAQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-----------VFPLPRRERRILEYLMANRGKRVAK 170
           +       P                             L R E  +L+  + N  + +++
Sbjct: 126 TRPAGAPEPREPGGVRFGRMRVDTETLRLRDESGAEQLLTRSEFALLKAFLDNPKRVMSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   +    D    +  ++  I+++RKK+  +      + + R LGY  
Sbjct: 186 ERLLD-LADARDPDAFDRAIDVRINRIRKKIEPDPANPRFIKTVRGLGYVF 235


>gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
 gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
          Length = 220

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F   +      +SA  D   ++  L   G   L
Sbjct: 3   ILLIEDDKLIGDGIKAGLIKMGFSVDWFTDGQQGLSALASAPYDAVVLDLSL--PGMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R +    P++ ++   +LQ  +     G DD + KP    E++AR+ A I RR 
Sbjct: 61  DILRTWRRNGHDEPVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G I +         QGE   L  +E  +LE L+ N G+ + ++ I   IY 
Sbjct: 121 GQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N +E HI  LRKK  +      + +   +GY++
Sbjct: 180 NWDDEVSSNAIEVHIHHLRKKFGSH----FIRTVHGIGYTL 216


>gi|310827746|ref|YP_003960103.1| hypothetical protein ELI_2157 [Eubacterium limosum KIST612]
 gi|308739480|gb|ADO37140.1| hypothetical protein ELI_2157 [Eubacterium limosum KIST612]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  ++   + E            +  ++  L        
Sbjct: 5   ILLIEDDRSLGAVIKDFLEREGYLVQWCTTGEDGLTFLERTAVKLVLLDIML--PDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            +   IR+   +P+I IS        +   + G DD + KP         +         
Sbjct: 63  TVCAKIRSAQSLPIIIISARSGDDDQITGLNLGADDYMGKPFSIGLLLAKIKSQLRRSYG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + V +  R   +      L  +E  +L  L+ N GK + K  +F  ++
Sbjct: 123 NQAENPLLRDKDLVVDTASRSVYLNETPINLTVKEYELLVLLLENAGKTLQKDWLFDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G+ D   E + +  HI KLR+K+  +      + +   +GY  +
Sbjct: 183 GV-DCFSEPSTLTVHIGKLREKIEADPKKPRRIKTVWGVGYRYE 225


>gi|257870403|ref|ZP_05650056.1| response regulator [Enterococcus gallinarum EG2]
 gi|257804567|gb|EEV33389.1| response regulator [Enterococcus gallinarum EG2]
          Length = 237

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 88/232 (37%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G         +      +   E    I   L       +
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWDATFKYDGKEGLEAFAETPEKWDMITLDLNLPTMDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  S   P+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 63  IVAREIRKISNTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRRSE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVA 169
           ++   +       F    D                    L  +E  +L  L     +  +
Sbjct: 123 IAEKASSETSDTTFDIVTDHFKMNTKTREAYLNGKLIDGLTPKEFDLLYTLAKKPRQVFS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 REQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 232


>gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++      F      +    + E           DV  ++  L   G    +
Sbjct: 6   LIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVML--PGISGFQ 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
           +   +R     V +I ++        +   + G DD V KP +  E++ R          
Sbjct: 64  VCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLVG 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  ++G  ++    +    + +   L  +E  +L+  + N+ K   + ++  
Sbjct: 124 KGTSDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            I+G +D   +  +V+ +I +LR K+ +K      +++   +GY 
Sbjct: 184 KIWG-YDYMGDTKIVDVNIRRLRSKIEDKDSHGMFIETVWGIGYR 227


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +  ++      +       S R  ++ I    +      L
Sbjct: 16  ILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR +  +P++ ++    +   +   D+G DD + KP    E    +  +    + 
Sbjct: 76  EVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRHSQN 135

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++      + + +  R       +  L +RE  +L  L+ N G+ + + ++ + ++
Sbjct: 136 QATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELLNLVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 196 GV-DFEGQPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 239


>gi|224823724|ref|ZP_03696833.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604179|gb|EEG10353.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 220

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  ++ DG  A  G  G  ++ F   +      S A  D   ++  L G  G +V
Sbjct: 3   ILLIEDDDMIADGLKAGLGQLGFVVDWFRDGKSGLAALSGAPFDAVILDLGLPGLDGMEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119
           L   R   A    P++ ++   +L   L   D+G DD + KP    E+     A I RR 
Sbjct: 63  LAAWRR--AGRSEPVLILTARDALPERLKGLDAGADDYLVKPFALAEVAARLRALIRRRH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G +      R   + GE   L  RE  +LE L+ ++G+ + ++ I   +YG
Sbjct: 121 GQSGPLYLHGALSFDPVARRATLSGEPLELTARELALLELLLVSKGRVLPRSLIEEKLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ ++ N VE H+  LRKKL    G   + + R +GY++
Sbjct: 181 -WDQELDSNAVEVHVHHLRKKL----GSGFIKTVRGIGYTL 216


>gi|241205712|ref|YP_002976808.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859602|gb|ACS57269.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 233

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        ++G  +         +   +    D+  ++      GE  +
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R +RA   VP+I ++        ++  ++G DD ++KP   R     I   +     
Sbjct: 72  DVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAG 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++ +   EV  L  RE+ I+       G  + + ++    
Sbjct: 132 GEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 189 --GNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRL 230


>gi|18309439|ref|NP_561373.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144115|dbj|BAB80163.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 234

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++   ++      +       ++ ++            
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEVHLAVVDIM--MPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LNMVKKDEKKTNSYSIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L +D +L+ DG  A     G  ++     E  E    +   + + ++  L    G  V
Sbjct: 3   ILLAEDDSLLGDGLRAGLRQLGFQVDWVRDGEAAERELRAQPYEAAVLDLGLPRKDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R   +  + P++ ++   ++   +   D+G DD V KP+   E+ AR+ A + R  
Sbjct: 63  LAAVRR--SGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R     + +    R     GE   L  RE  +L+  M +  + +++ Q+   +Y 
Sbjct: 121 GQPQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + VE N +E HI  LR+KL    G   + + R +GY +
Sbjct: 181 -WGQEVESNAIEVHIHNLRRKL----GPALIHTVRGVGYML 216


>gi|114330053|ref|YP_746275.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307067|gb|ABI58310.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEIKTGEYVRQGLVESGFIVDLARTGLDGHHLALTEDYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +R   S  P++ ++   S++  +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQALREAKSATPVLFLTARDSVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++ +   + +    R    Q     L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 APALSDQLQVADLVLDIPRRRARRQEVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDAFEPKLIHTVRGMGYMLDV 223


>gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLR 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         +   +++     +       +   D+  ++  L       + 
Sbjct: 4   LLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVL--PKLDGIS 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R  H+  P++ ++   S  + ++  D+G DD V KP    E+ AR+ AI RR   
Sbjct: 62  LCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRGSA 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +            +      +       L  +E  +LE  + N  +  ++  I   ++  
Sbjct: 122 ALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLWS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           F+E   E+ V +HI  LR KL+      D V++   LGY +
Sbjct: 181 FEEPPAEDTVRAHIKGLRSKLKAAGAPPDLVETVYGLGYRL 221


>gi|291525415|emb|CBK91002.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528479|emb|CBK94065.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 217

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G S            +      D+  ++  L        
Sbjct: 4   ILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVML--PKLNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I     +P+I ++   +L   L    SG +D + KP    E+LARV  + RR   
Sbjct: 62  ELMEYI-KPLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     I + +  ++    G+   L  +E  +LE LM N+   + + +I+  I+G  
Sbjct: 121 MEQQLTFKDIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +VE   ++ HI +LRKKL      D + +    GY ++ 
Sbjct: 180 EYSVESRTLDLHIQRLRKKLD---IGDSLKTVFKAGYRLEE 217


>gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
 gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +    L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTTTLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A    +          +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|257470678|ref|ZP_05634768.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317064884|ref|ZP_07929369.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690560|gb|EFS27395.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 215

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59
           M ++++D A ++    A+  D+ + +E   + E          + ++  ++  L      
Sbjct: 1   MILIVEDTAHIRKLIKAVLKDENIEIEEAVTGEEAIDKIQQGKKYELILMDIML--PKID 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +   + IR  ++ P+I ++     +  +  ++SG D  + KP          + + R +
Sbjct: 59  GISTTQKIREITETPVIFLTALSDEKNQIIAYESGADGYITKP---FSKEILKSIVRRYV 115

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G + +        +  E   L  +ER IL YL  N+G    + QI S ++G
Sbjct: 116 FKSGVIKKYGDLEINKKSGKVLLNKEEITLTIKERDILFYLEENKGIVKTREQIISGVWG 175

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    +  V+ H+++LR+KL        + + + +GY  + 
Sbjct: 176 -YDFIGTDRTVDKHLTRLREKL--NSCSKYIKTVKAIGYKFEE 215


>gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
 gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  +D   +         ++G S++                 DV+ ++  L        
Sbjct: 3   LLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQFTDYDVAILDIML--PHADGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S++  +   DSG +D + KP    E+LAR+  + R   
Sbjct: 61  AILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKH 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    T      +         G+   L  +E ++LEYLM N+ K +++ +I + I+ 
Sbjct: 121 NLSENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+ +      + + R  GY I
Sbjct: 180 NYDYEGGTNVIDVYIRYLRKKIDDGFDTKLIHTVRGAGYVI 220


>gi|229018018|ref|ZP_04174894.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026943|ref|ZP_04183264.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734357|gb|EEL85030.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228743287|gb|EEL93411.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 214

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         +    D+  ++           E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYTVVVTSDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A       K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNYLVFKEVRIDVDAYRVYVNDIEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  ++++HI  LRKKL        + + + +GY ID 
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214


>gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         DDG+ ++        + +      D+  ++  L    +   +
Sbjct: 4   LLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQAGFD 63

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           L R +     ++P++ ++    + + L   D+G DD + KP   RE+ AR+       + 
Sbjct: 64  LARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRRAKG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +N         +          G+  PL  RE  ++E L  N G+  ++  +   ++ 
Sbjct: 124 EAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIERVW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI---DWN 223
             +  V+  VV+ ++S LR+KL      D V++ R LGY +   + N
Sbjct: 183 PGESEVDTKVVDVYVSSLRRKLGE----DFVETVRGLGYRLGRMEEN 225


>gi|294501956|ref|YP_003565656.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294351893|gb|ADE72222.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  ++          +    +  ++ ++  L   G    E
Sbjct: 10  LLIDDEPTILQFLSLGLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVML--PGMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121
           + R+++    + +I ++    +   +     G DD + KP    E +    A I  +   
Sbjct: 68  VCRLLKKMGDIAVIMLTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARIRNQFPN 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    GP ++    ++ +    +  L   E  +L++L+ N G  ++K+ I   ++G +
Sbjct: 128 LLDEVSIGPFKIDDRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   EEN+VE +I  LR+KL++      + + R +GY ID
Sbjct: 187 DFGGEENIVEVYIRSLREKLQDHS-RTVIRTLRGVGYRID 225


>gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 84/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L       +  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVML--PGLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + +R     +P++ ++    ++  +   + G DD + KP    E+    R+      
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRAKIDEGHSIKLIQTVRGMGYVLDV 223


>gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
 gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D    ++     +  ++  + +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKDLSHQVDSAEDAKEADYFLNESHPDIAVVDLGL--PDEDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R++   +P++ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++        +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     + + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHEQEVIVTVRGQGYRFDVN 223


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  +      E      +    ++  ++           
Sbjct: 4   ILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVM--MPRLNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++     Q  ++  ++G DD + KP   RE+LAR+ AI RR + 
Sbjct: 62  AMLAKLRETHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQS 121

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +            + +    +      ++  L   E  +LE L+ N G+ V+K+Q+ 
Sbjct: 122 AQPQRGGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECLLRNPGQIVSKSQLS 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             + G   E  +   ++ H+S LRKKL     G     + R  GY
Sbjct: 182 ELVLGKKLEPFD-RAIDMHLSNLRKKLPERTDGQPRFKTVRGRGY 225


>gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +G  +    S    +        D+  ++  L   G    
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
                IR     P+I IS   +++  ++    G DD ++KP    E+LAR       +  
Sbjct: 65  IFIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKI 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F  
Sbjct: 125 TNSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFET 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 185 VW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +  G    F  +   ++     E     ++   + DV  ++  L  K     
Sbjct: 12  LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEK--DGF 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    +      P++ I+     ++ L  F  G DD + KP +  E+ ARV AI +R  
Sbjct: 70  EVLEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTM 129

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                                 +    G+       E  IL YL+ ++G+ V + Q+   
Sbjct: 130 PPAEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRD 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++G+ +  +    ++ H++ +RKK+  +      +++   +GY  D 
Sbjct: 190 VWGIDENII-TRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDE 235


>gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++        +G  ++     +    +  S    +  ++  L       L
Sbjct: 3   ILVIEDDQTTREFIAKALEQEGFIVDNSGDGKEGLMMAISCEYQLIVLDRML--PNIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++   IRA     P++ +S   S+   ++   +G DD + KP    E    +  +    R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++  +N  +   + +    +   +      L  +E  +L YL  +  + V++ ++F A 
Sbjct: 121 PIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEAA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+KLRKKL      + +++ R  GY I
Sbjct: 181 WD-YHFDPKTNVIDVHIAKLRKKLEQGGAINLIETVRGAGYVI 222


>gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 236

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVML--PDMDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 68  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      +       D  +    G V  L   E ++L YLM N  + ++K+QI   +
Sbjct: 128 PLLDDDAVIRVGDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 230


>gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++     E   +L  +   D   ++  L    +  +
Sbjct: 3   LLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGL--PKQDGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            +     RA  + P+I ++        ++ FD+G DD V KP H  E+LARV AI  R  
Sbjct: 61  TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  + +LRKKL      D + + R LGY ID
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLID 217


>gi|117617624|ref|YP_858615.1| DNA-binding transcriptional regulator RstA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559031|gb|ABK35979.1| transcriptional regulatory protein RstA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 252

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +     +      + +      +       + + D+  ++  L   G+  L
Sbjct: 20  ILFVEDDPEIGQLISSWLARHDMEVLLEPRGDLALARVEAEQPDLVLLDIML--PGQDGL 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R     P++ ++   S    +   + G +D + K      +LAR+   +R+   
Sbjct: 78  SLCRDLRPRFAGPIVMLTSLDSDMNQILSLELGANDYILKTTPPPVLLARLRVQFRQQGQ 137

Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +           + G +++   GRD  + G+  PL   +  +L  L  + G+ + + 
Sbjct: 138 QAPQPVVAGTPPQRLQFGRLQIDGPGRDVRLDGDSIPLSTADFDLLWELACHAGQILGRE 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +F ++ G  D   ++  ++  IS+LR+KL +       + + R  GY +
Sbjct: 198 ALFRSLRGR-DYDGQDRSMDVAISRLRRKLGDDTSNPTRIKTVRQKGYLL 246


>gi|117619332|ref|YP_854542.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560739|gb|ABK37687.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++         +G  +     +            D+  ++  L       +
Sbjct: 4   ILVIDDEAAIRRFLRISLIAEGHQVSEAVGVNEGLAQYRHLNPDLVILDLGL--PDGDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
           ++ + IR H Q P++ +S   S Q  +   D+G +D ++KP         I   +     
Sbjct: 62  QVLQAIREHHQHPVLVLSARDSEQEKVRLLDAGANDYMSKPFGIGEMMARIRVLLRQRAG 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + + S      +  E  PL R+E  +L+ L+ + GK V +TQ+ + I
Sbjct: 122 VSSGEQRHFPQCGLTLDSSSHRVTLGEEEVPLSRKEFALLQALVCHPGKLVLQTQLLNDI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G   +  + + +   I+ LRKKL +       ++++  +GY  
Sbjct: 182 WGPSHKE-DTHYLRIVIASLRKKLGDNPQQPTLIETESGIGYRF 224


>gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6]
 gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
 gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6]
 gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 90/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  +          +  +S R D+  ++  L        
Sbjct: 3   LLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVML--PHLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           ++ R +R++    P+I ++    ++  +   + G DD + KP    E    +  V    +
Sbjct: 61  QVLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S  R     + +    R      E   L  +E  +LE  M   G+ ++++QI S++
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + + +   + NV++  + +LR K+        + ++R +GY ++ 
Sbjct: 181 WDM-NFDSDTNVIDVAVRRLRNKVDKPFEPKLIHTERGMGYVLEE 224


>gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+++           +       +  ++          + 
Sbjct: 9   LVVDDEKEIRDAIDIYLRGEGINVIKAGDGFEALEILDKEDIHLVVLDIM--MPKLDGMR 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD V KP +H E++ARV +  RR    
Sbjct: 67  TCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 123 NNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            NR  T  +       + +  +   ++GE   L   E +IL  L ++ G+  +  +I+  
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  HI ++R+K+  N    + +     LGY ID 
Sbjct: 187 VWEEP-FYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKIDK 232


>gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 247

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++      G   LE
Sbjct: 26  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIM--MPGFDGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 84  LLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 143

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++       +       D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 144 ASIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 204 -NYDFGGQANIVELYISYLRKKI-DVGREPMIHTVRGAGYVL 243


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +             +   DV  ++  L       +
Sbjct: 4   ILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R++ 
Sbjct: 62  EVARRVREEKNTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDGNNNNHQTTVKYQDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRQELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDAKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +G  +    S    +        D+  ++  L   G    
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
                IR     P+I IS   +++  ++    G DD ++KP    E+LAR       +  
Sbjct: 65  IFIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKI 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   + +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F  
Sbjct: 125 TNSSEGVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFET 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 185 VW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|126700190|ref|YP_001089087.1| two-component response regulator [Clostridium difficile 630]
 gi|115251627|emb|CAJ69460.1| Two-component response regulator [Clostridium difficile]
          Length = 238

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++    +      +  +    ++ ++          +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMKLRENYNFPVIMLSAKSEEVDKMMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 122 SNNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N       +V                + ++  + G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  +I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 FSADEIYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237


>gi|154487500|ref|ZP_02028907.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
 gi|154084018|gb|EDN83063.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 16/226 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +          +G +    +         S+ R D+  ++  L       LE  
Sbjct: 2   VEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIML--PVMDGLEAT 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +  
Sbjct: 60  KRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 125 RAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            A+              +    R   V GE   L   E  +L  L       + + ++  
Sbjct: 120 IAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +     V+SH+  LR KL +K     + +   +GY+ +
Sbjct: 180 EVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 220


>gi|85716031|ref|ZP_01047008.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
 gi|85697229|gb|EAQ35110.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
          Length = 242

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S +       S   D+  ++      GE   
Sbjct: 23  LLLVDDDRRIRDLLSRFLVGEGYRVTTAMSAKAARSKLLSLHFDLLILDIM--MPGETGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IRA S VP+I ++     +  ++    G DD + KP   RE++ R+  I +R   
Sbjct: 81  DLARSIRASSPVPIIMLTALHEAENRIEGLQIGADDYLAKPFEPRELVLRIGNILKRTIP 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP     +  +     +V  L  RER +L  L A  G+ V + ++    
Sbjct: 141 LPAMRSESIAFGPYVYHLERGELRQGDDVIHLTDREREMLRMLAATPGETVRRGEL---- 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  V E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 197 --NAGGTVNERAVDVQINRLRRKIERDPANPLFLQAVRGVGYRL 238


>gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A+      +            +      D+  ++           
Sbjct: 4   ILIVEDDANTTKLICAVLKRGNYNCFTARDGLDALSMMERQYFDLIILDLM--MPRMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L + +R      P++ I+    ++     F  G DD + KP   +E+L R+ A + R  
Sbjct: 62  QLCKELRDVGENTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ ++   G   +  +        +   LP++E  +L  LM+   K   + Q+   I+G
Sbjct: 122 IVNEHKLTIGDTTLDYNTLTVTHGEDTITLPQKEFYVLFKLMSYPDKIFTRMQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + + +  H+ +LR+KL+N   F+ + + R LGY 
Sbjct: 182 -PDTETDGHTLNVHMGRLREKLKNNPDFE-IVTVRGLGYK 219


>gi|94265541|ref|ZP_01289288.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453941|gb|EAT04291.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G  +E        E L ++   D+  ++  L       L
Sbjct: 6   ILVVDDDPSMLRLCQVVIQRQGWLVESAQDGGSAEGLLATRSFDLVVLDLNL--PDGDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +     VP + ++        +  F+ G  D + KP H  E++ R+  +    + 
Sbjct: 64  DVGRRLHQQG-VPFLLMTARDRPNERVAGFEVGAADYLTKPFHPNELVHRIRRVLGLRES 122

Query: 122 SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +                   +  G    L   E R+L  L+A  G+ V + ++   
Sbjct: 123 PTPASVRHHRLGAWQFAPEDGLLSDHNGRRVELTTGESRLLATLLAADGRVVDRDRLLQT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    + A     V+  +S+LRKKL +       + +   +GY +
Sbjct: 183 V-ARSEGAGHYRTVDVLVSRLRKKLEDDPRHPALIITVTGIGYRL 226


>gi|294649454|ref|ZP_06726879.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824659|gb|EFF83437.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 238

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +                + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIIREQPDLVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|254380472|ref|ZP_04995838.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339383|gb|EDX20349.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +              +E  +       L +S + DV  ++  L       +E
Sbjct: 5   LVVEDDPQLVRALKINLQARKFEVEEASDGGSALRLAASHKPDVIVLDLGL--PDMDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S+VP++ +S   + +  +   D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIKGVRVWSKVPILVLSARHTSEDKIRALDAGADDYVTKPFSMDELLARLRAAARRHEAP 122

Query: 123 NNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                       T    V    +          L   E  +LE L+ + G+ + ++++  
Sbjct: 123 AASPADEVSVVTTEEFTVDLVAKKVRRGERTVRLTPTEWHLLEILITHPGRLITQSKLLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G        N +  ++++LR+KL  +      + ++  +GY  +
Sbjct: 183 EVWGPTYGD-NTNYLRVYMAQLRRKLEADPSHPRYLITEPGMGYRFE 228


>gi|162138532|ref|YP_364746.2| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 9   LVVEDEAAIADTVLYALRSEGYAPEHCLLGRDALTRLRADPADVVVLDVGL--PDINGFE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ SQVP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 67  VCRTLRSFSQVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRHAG 126

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G   +  +G        + PL R E  +L  L+   G  +++ Q+    +
Sbjct: 127 APAESGWQPHGAFAIDREGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRAQLMDRGW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
               ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 187 DASADSAD-RTVDTHIKTLRGKLRLAGVPADPIRTHRGLGYALEV 230


>gi|170728288|ref|YP_001762314.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813635|gb|ACA88219.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 221

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +    N          +   D   ++  L        
Sbjct: 5   ILIVEDDEKIATILAKYAQGSGYNHHIINDGAEVISWVKANEPDAILLDIML--PNVSGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S+VP++  +        L   + G DD + KP   +E++AR+  I RR+  
Sbjct: 63  ELCKQIREFSEVPVLMATAKVEEIDRLLGLEIGADDYICKPFSPKEVMARIKTILRRVPT 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                     ++    +  ++Q    PL   E RIL    +       + Q+ + +Y  +
Sbjct: 123 KA---PDSLFQLDVVSQRAKLQNIELPLTPVEFRILHAFTSKPDNVWNREQLLNKMYDDY 179

Query: 182 DEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220
              V +  V+SH++ LRKK L ++L  D + S   +GY  
Sbjct: 180 -REVSDRTVDSHVANLRKKLLASQLKHDFIGSVYGVGYRF 218


>gi|71907213|ref|YP_284800.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71846834|gb|AAZ46330.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  LV  G        G +++   S E  E        D++ ++  L       L
Sbjct: 3   ILIVEDDNLVAQGLKQGLQQLGYTVDVARSAEEAEAFAVGEDFDITLVDIGL--PKADGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
              R +R      P + ++   S+  T+   D+G DD + KP    E+ AR+ A I R  
Sbjct: 61  HFIRQLRTRGNRLPALILTARDSMDDTIKGLDAGADDYMTKPYRLPEVAARIRALIRRSN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V +       IR+ +      + GE   L  RE  ILE L+      V+K ++   + G
Sbjct: 121 AVVDACLHHDGIRMDTRSHTATLNGEPLDLTNREWAILEMLLMASPAVVSKDKLVQGLAG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+ +  N +E H+S+LR+KL    G   + + R +GY +D
Sbjct: 181 -WDKDITPNAIEVHVSRLRQKL--TTGTIVIRTVRGIGYRVD 219


>gi|300696879|ref|YP_003747540.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Ralstonia solanacearum CFBP2957]
 gi|299073603|emb|CBJ53123.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Ralstonia solanacearum CFBP2957]
          Length = 256

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G+             L  S + D+  ++          
Sbjct: 28  LILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVLLDV--QMPHVDG 85

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            +    IR     P+I ++        L     G DD V KP +  E           +R
Sbjct: 86  WKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSR 145

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A  R  +V         +           Q  V  L   E ++L  L     +  ++ 
Sbjct: 146 SDAGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHVLALTLTEFKLLAQLARAPKRVFSRA 205

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +A   L +    E  V+SHISKLRKKL +          R +GY +
Sbjct: 206 ELLAAC--LPEGDTLERTVDSHISKLRKKLEDLGVDGMPVGVRGVGYRL 252


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G S+E   +             D+  ++  L        
Sbjct: 13  ILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVML--PDFDGY 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S +P++ ++    L+  L   ++G DD V KP    E++ R+  I RR  
Sbjct: 71  EVLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTT 130

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           + +  D  +   +G +  L   E ++L YLM N  + V+K QI   +
Sbjct: 131 PSEEDSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG------------FDPVDSKRFLGYSI 220
           +  +D   E ++VES+IS LR+K+ +  G               + +KR +GY +
Sbjct: 191 WD-YDWIGEASIVESYISYLRRKIDSADGLGITDPKEVAALVPLIHTKRGIGYVM 244


>gi|239832403|ref|ZP_04680732.1| Protein petR [Ochrobactrum intermedium LMG 3301]
 gi|239824670|gb|EEQ96238.1| Protein petR [Ochrobactrum intermedium LMG 3301]
          Length = 235

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 16  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGV 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 74  SLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 133

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       G+ + + ++    
Sbjct: 134 PAQPKIEQIVFGPYTFFIPRRELKKGSETIKLTDREQDIMAIFAERAGETIPRHELT--- 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 191 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 232


>gi|207728312|ref|YP_002256706.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206591558|emb|CAQ57170.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 256

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G+             L  S + D+  ++          
Sbjct: 28  LILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVLLDV--QMPHVDG 85

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            +    IR     P+I ++        L     G DD V KP +  E           +R
Sbjct: 86  WKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSR 145

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A  R  +V         +           Q  V  L   E ++L  L     +  ++ 
Sbjct: 146 SDAGRRDQRVLRVAPFQIDLDNHEVTVQVGKQRHVLALTLTEFKLLAQLARAPKRVFSRA 205

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +A   L +    E  V+SHISKLRKKL +          R +GY +
Sbjct: 206 ELLAAC--LPEGDTLERTVDSHISKLRKKLEDLGVEGMPVGVRGVGYRL 252


>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        ++  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|153956003|ref|YP_001396768.1| hypothetical protein CKL_3394 [Clostridium kluyveri DSM 555]
 gi|146348861|gb|EDK35397.1| Hypothetical protein CKL_3394 [Clostridium kluyveri DSM 555]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G       D        ++   E        D+  ++  L        
Sbjct: 4   ILVVEDDIMLNSGLCYNLQLDNYEAIPAYNMPSAEENIRDMDFDLIVLDINL--PEGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  + I++   VP+I ++     +  +  F+ G +D + KP +      +V AI RR   
Sbjct: 62  DFCKKIKSRRDVPVIFLTACDMEEDVMKGFELGAEDYITKPFNINIFRKKVGAILRRCDK 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N    G   V  +     ++GE   L   E ++L+    N  K + +  +   ++ 
Sbjct: 122 QWGENIYTQGSFIVDFNRFTATLEGEQITLTPTEYKMLKIFTENPNKVLTRQALLEKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                V+E+ +  +I++LR K+ ++     + +   +GY 
Sbjct: 182 CHGNFVDEHALTVNINRLRGKIESE-NRKYIKTVYGMGYM 220


>gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L    + D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|116495160|ref|YP_806894.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191638669|ref|YP_001987835.1| Response regulator [Lactobacillus casei BL23]
 gi|199597204|ref|ZP_03210636.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|227534824|ref|ZP_03964873.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239632042|ref|ZP_04675073.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|258508721|ref|YP_003171472.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539900|ref|YP_003174399.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|301066724|ref|YP_003788747.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116105310|gb|ABJ70452.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712971|emb|CAQ66977.1| Response regulator [Lactobacillus casei BL23]
 gi|199592008|gb|EDZ00083.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|227187580|gb|EEI67647.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526507|gb|EEQ65508.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|257148648|emb|CAR87621.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257151576|emb|CAR90548.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259650027|dbj|BAI42189.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|300439131|gb|ADK18897.1| DNA-binding response regulator, OmpR family [Lactobacillus casei
           str. Zhang]
 gi|327382710|gb|AEA54186.1| DNA-binding response regulator YycF [Lactobacillus casei LC2W]
 gi|327385897|gb|AEA57371.1| DNA-binding response regulator YycF [Lactobacillus casei BD-II]
          Length = 228

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ +
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 121

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                      +           R      ++  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G ++  VE NVV+ ++  +R K+        + + R  GY +
Sbjct: 182 SKVWG-YNSDVETNVVDVYVRYIRNKIDRPGEPSYIQTVRGTGYVM 226


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +           L  + + D   +   +I      L
Sbjct: 4   ILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWEL--TQKNDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +          G+V  L  +E R+LEY + N+G  +++  +   +
Sbjct: 122 GNESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-DFDTNTNVVDVYVNYLRTKIDKDFEPKLIHTVVGVGYMME 224


>gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 234

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +    +      + +    D+  ++     +G    
Sbjct: 5   ILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVM--MEGYNGF 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR      P+I +S    L      F  G DD + KP    E++ R  +  R   
Sbjct: 63  EVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRS 122

Query: 121 VSNNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                AE              + +  D R   V      L  +E  IL  +         
Sbjct: 123 PQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + QI  +++G +       VV   I KLR+K+  +      + ++  +GY I
Sbjct: 183 RQQILDSVWG-YGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRI 233


>gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  ++        +    S   D+  ++  L       L
Sbjct: 3   ILLVEDEPGIAQFINQGLKETGYGVDLAIDGLEGKRYIESVEYDIIILDIML--PKIDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L   IRA     P++ ++   S++  +   + G DD + KP    E+LAR+ A   R  
Sbjct: 61  TLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   +++    R+ +   ++  L   E ++LEYL+ N  + + +TQI   ++ 
Sbjct: 121 LQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223
           L D     NVV+ +I  LR+K+        + + R +GY +  + N
Sbjct: 181 L-DFYTNSNVVDVYIGYLRRKIDRGFDNQLLHTIRGVGYCLKPEGN 225


>gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +G  +    S    +        D+  ++  L   G    
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
                IR     P+I IS   +++  ++    G DD ++KP    E+LAR       +  
Sbjct: 65  IFIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKI 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    R+ +V GE   L  +E +ILE L+ N  K   K  +F  
Sbjct: 125 TNSSEGVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFET 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 185 VW-KEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|134279950|ref|ZP_01766662.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
 gi|134249150|gb|EBA49232.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
          Length = 273

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L    G +V
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLEV 88

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 89  LSRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 246


>gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGL--PGMSGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL  R+       P++ ++   + Q  ++   +G DD + KP    E+ AR+ A + R  
Sbjct: 61  ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY  
Sbjct: 180 PGDEERDPNVIEVLVGRLRRKLEGARGFKPIDTVRGLGYLF 220


>gi|118472637|ref|YP_889637.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           smegmatis str. MC2 155]
 gi|118173924|gb|ABK74820.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           smegmatis str. MC2 155]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +    S        +  R DV  ++  L       +E
Sbjct: 10  LVIDDEPQILRALRINLSVRGYEVRTAASGAEALHSAADHRPDVIVLDLGL--PDMSGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        ++  D+G DD V KP    E LAR+ A  RR  V 
Sbjct: 68  VLHGLRGWLSAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAARRAAVP 127

Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   T    V    +     G    L   E  +LE L+ NRGK V + ++   ++G
Sbjct: 128 ETDQPVIETTSFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLREVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
               A E + +  ++++LR+KL +       + ++  +GY  +
Sbjct: 188 -PAYATETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGYRFE 229


>gi|170023956|ref|YP_001720461.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis YPIII]
 gi|1617255|emb|CAA47148.1| phoP [Yersinia pseudotuberculosis]
 gi|49617497|gb|AAT67459.1| nonfunctional two-component system response regulator [Yersinia
           pseudotuberculosis]
 gi|169750490|gb|ACA68008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H +  P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223


>gi|73539891|ref|YP_294411.1| DNA-binding response regulator CreB [Ralstonia eutropha JMP134]
 gi|72117304|gb|AAZ59567.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + + D        DG+++E             +   D+  ++  L        
Sbjct: 6   ILVIEDESAIADTIDYALSTDGMAVERCALGGDALERLRTQAFDLVILDVGL--PDLSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  + VP+I ++        +   + G DD V KP   RE+    RV       
Sbjct: 64  EVCRTLRTFTDVPVIFLTARHDEIDRVVGLEIGADDYVVKPFSPRELAARVRVILRRTAR 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +     A      V +DG      G    L R E R+L  ++ + G+  ++ Q+   ++ 
Sbjct: 124 QPVAEPASQSVFTVDNDGARVAFHGHWLELTRYEYRMLALMLRHPGRIYSRAQLMDEVWH 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              + ++   V++HI  +R KLR      DP+ + R +GYSI+
Sbjct: 184 DAPDTID-RTVDTHIKTVRAKLRALDAASDPIRTHRGMGYSIE 225


>gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
 gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae 10810]
 gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2846]
 gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 87/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++            +   +  +            +  ++  L G  G + 
Sbjct: 5   ILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
           ++  +   +++ +P+I ++   + +  +   ++G DD + KP      +    A   R  
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + +  + +    Q +   L   E ++L + M +  K  ++ Q+ + I+ 
Sbjct: 124 EQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIWH 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE   V+S+I +LR+ L        + + R  GY  
Sbjct: 184 N-DLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRF 223


>gi|327389463|gb|EGE87808.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 214

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 87/215 (40%), Gaps = 14/215 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
             +G  +    +         + + D+  ++  L       LE+ + IR  S VP++ +S
Sbjct: 2   TKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGLEVAKTIRKTSSVPILMLS 59

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------ARVAAIYRRLKVSNNRAETG 129
              S    +   + G DD V KP  +RE+             +    +         + G
Sbjct: 60  AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIG 119

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D    +  GE   L  RE  +L +L ++ G+ + +  +   ++G +D   +   
Sbjct: 120 DLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITREHLLETVWG-YDYFGDVRT 178

Query: 190 VESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 179 VDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 213


>gi|332654966|ref|ZP_08420708.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516309|gb|EGJ45917.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ D    L    G       S      L   +  D+  ++  L   G    
Sbjct: 7   ILIIEDDMLLNDMTKRLLTQHGYCTTSAYSGSEALLLIERSSFDLILLDLML--PGIPGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            +   I+    +P+IG+S    + + ++   +G DD + KP  ++E+L R          
Sbjct: 65  IVLEKIKNIIDIPIIGVSARTDIDSKVNLIRNGADDYITKPFDNQELLVRIEAVLRRFQK 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++       + + ++  + +++     L R E  IL+ LM++  K   K  IF +
Sbjct: 125 STTPNNSKILRFKDLSLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   ++N +  HI  LRKK  +       + +   LG+ +
Sbjct: 185 VWNE-NFIGDDNAINVHIGNLRKKFAKVNPEEKYIQTVWGLGFKM 228


>gi|326201397|ref|ZP_08191269.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988965|gb|EGD49789.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 234

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L  + G            E        D+  ++  L   G+   
Sbjct: 18  ILIVEDEKSISDELAILLQNAGYDTAVIEDFADTEAQIKKTMPDLVLLDIGL--PGQDGY 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  SQ+P+I ++   +    L     G DD ++KP     +LAR+ A+ RR   
Sbjct: 76  RICTELRKTSQIPVIFVTSRNTSMDELRALSLGGDDFISKPYDLPILLARIQALLRRSGQ 135

Query: 122 SNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T      S    + E  G+   + + E +IL  LM   GK V+++ +   ++  
Sbjct: 136 AEKDILTVNGLTLSLPNWEIEHNGQRADITKNEAKILSCLMKTPGKIVSRSDLIEYLWDN 195

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               +++N +  ++++LR KL N    D V +KR LGY I
Sbjct: 196 -QVYIDDNTLSVNVTRLRGKLNNIGLPDYVKTKRGLGYKI 234


>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
 gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 237

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++    +  +DG S+    +           + D+  ++           E
Sbjct: 17  LVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIM--MPQMDGYE 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +R +   +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR KV
Sbjct: 75  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 134

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++        +           E + +P +E  +L  L +  GK +++ ++   ++GL
Sbjct: 135 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  ++ HI++LR++  + +    + + R LGY ++
Sbjct: 195 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 234


>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G   +   +   +   N  +      +     +  ++  L   G    
Sbjct: 5   ILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVML--PGLSGY 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
           ++ + +RA     P++ ++        +   D G DD V KP          + L R   
Sbjct: 63  DVCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRRIE 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +       G   +     +         L  RE ++L+    + G+ +++ ++ 
Sbjct: 123 KPAAESIGKESFTIGDATIDPRTFELRRGKVQEELTARELKLLQLFHGHPGEVLSRDRLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + ++G +        ++  I +LRKKL +       + +   +GY +
Sbjct: 183 NDVWG-YGYYGTTRTLDQVIVQLRKKLGDNGAEPKHLVTVHGVGYKM 228


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 24  LVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVML--PDMDGLS 81

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  R+ R +  VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 82  VLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 141

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +    G + +  D  +    G+   +   E  +L +LM N  + ++K QI  
Sbjct: 142 AVAAGRAESTLTVGDLVLDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQILD 201

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 202 RVW-NYDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 244


>gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
 gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+ RR 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRRS 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    R+          D  +   +G +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRSLQVGDLSYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFAKPLLHTVHGVGYRL 220


>gi|326330532|ref|ZP_08196840.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325951807|gb|EGD43839.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG                 S   D+  ++  L        
Sbjct: 4   ILIVEDEDRIAAFLAKGLSADGHQTTTVADGLEGLEEALSGAFDLMVLDIGL--PTIDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +RA  S++P++ ++   S+  T+   + G DD + KP    E+ AR+    R+  
Sbjct: 62  EVLDQLRAQGSRMPVVVLTARDSVHDTVSALEGGADDYLAKPFRFAELRARINVRLRQQD 121

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++       +G + +    R   V G    L  RE  + E L+ + G+ +++ Q+    
Sbjct: 122 NTDAEVGELRSGSVALDLRTRRLRVDGRETDLSAREFALAEVLLRHPGQVLSRAQLLDLA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D     NVV+ ++  LRKKL +      V++ R +GY  
Sbjct: 182 WGM-DFDPGSNVVDVYVGYLRKKLGSA----RVETVRGMGYRF 219


>gi|319783915|ref|YP_004143391.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169803|gb|ADV13341.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 244

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D+G+++E   S         + + D+  ++  L   GE  L
Sbjct: 14  ILIVEDDLEIARMLGDTLTDNGMTVEIAESGVQMNAALRTQKFDLIVLDVML--PGENGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA + +P++ ++        +   + G DD V KP   RE+ AR+ A+ RR   
Sbjct: 72  NICRRLRAATNIPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAY 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
             +  +   +  F+  R   ++ ++             E  +L     N G+ +++ ++ 
Sbjct: 132 DPDERDWSKVLRFNGWRLDPIRRQLHDPNNARVTTTTHEFDLLLAFCRNAGRVLSREELL 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +         E  V+ HIS++R+K+  +      + + R  GY  
Sbjct: 192 -GVTHAGLAGPIERSVDVHISRIRRKIEKDARDPVLLRTVRLGGYIF 237


>gi|315612711|ref|ZP_07887622.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314821|gb|EFU62862.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKLLSEWGFEVILVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAIDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGY 220


>gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
 gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
          Length = 222

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G      ++             D+  ++           
Sbjct: 4   ILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHSIDLVVMDVM--MPELDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
                ++A    +P+I ++        +  F+ GVDD V KP   + +L R+ AI  R  
Sbjct: 62  SALEKMKALQPNLPVILLTALGQEYDKVHGFELGVDDYVEKPFSPKVLLLRMRAILQRVY 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   ++V        +   V  L  +E  +L YL+ N+G  +++ Q+   ++G
Sbjct: 122 GHQLEGYEKEGLKVDYQAHKVMLNNCVLSLSPKEYDLLVYLIKNKGIALSREQLLRQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   ++  +++HI  LRK L++      + + R +GY  D 
Sbjct: 182 M-DFFGDDRTLDTHIKLLRKNLQDF--AKHIVTIRGVGYRYDE 221


>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 62  EVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G  +    +           + D   ++  L       L+
Sbjct: 46  LVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIML--PDLDGLQ 103

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA +  +P++ ++   SL   L    +G DD V KP    E++AR+  + RR  +
Sbjct: 104 VLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSTL 163

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +      IRV       D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 164 VVSDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILDR 223

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + +VVE +IS LR+K+ +      + + R  GY +
Sbjct: 224 VWS-YDFGGKSSVVEIYISYLRRKI-DAGRNPMIHTVRGSGYML 265


>gi|120609021|ref|YP_968699.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120587485|gb|ABM30925.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 227

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          DG+++     L     L  + R D+  ++  L       L
Sbjct: 5   LLLVEDDPAIARTVAYALERDGLAVSHSLLLGDARGLLRAHRFDLLVLDVGL--PDGSGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   S +P++ +S +      +   + G DD + KP   RE+ AR  A+ RR  
Sbjct: 63  DLLRELRQQGSALPVLMLSAHGEEIDRVLGLELGADDYLPKPFSPRELAARAKALLRRAA 122

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +    P    + G+   + G    L RRE R+L  L+A  G+   +  + +  
Sbjct: 123 APAAAPASPVTGPFHDDAAGQRMHLHGRPLALTRREYRLLSQLLAGAGRIHTREALLAGA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           +G  D    +  V++HI  LR KL       + + + R +GYS++ 
Sbjct: 183 WG-GDSESTDRTVDTHIKTLRAKLREADPSREYIHTHRGMGYSLEV 227


>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +       F  +   +   +  +      ++   D+  ++  L    +  L
Sbjct: 6   ILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLML--PKKNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R ++ H+++P+I +S        +   + G DD V KP   +E++ RV  + +R+  
Sbjct: 64  DICRQLKPHNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKRINN 123

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ E     + +  + R  +V+ E   L  +E  +L  L ++     ++ ++   ++ 
Sbjct: 124 DQDQNELSFPDLIINKEQRLVKVKKEEIALAPKEFDLLWQLASSPKTVFSREKLLELVWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD       V++HI  +R KL  ++G + V +   +GY  
Sbjct: 184 -FDYFGGIRTVDTHIKSIRNKLGAEVG-NYVQTVWGIGYKF 222


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR +   VP++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 127 DPDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN----------KLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+            K     +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 238


>gi|293602289|ref|ZP_06684736.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292819318|gb|EFF78352.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 230

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D+   ++          L    + D+  ++  L   G    
Sbjct: 3   ILVIEDEQKLAELLRRSLTDNSYIVDIAMDGVSGLQLAYETQYDLIILDIGL--PGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +  VP++ ++   SL+  +   + G DD + KP    E+ ARV A+ RR   
Sbjct: 61  EVLQRIRKNDNVPVMMLTSRSSLEDRVRGLEQGADDYLIKPFALSELQARVLALRRRAAG 120

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S +    G I            R          L  +E  +L ++M   G+ +++  +  
Sbjct: 121 SGDTMSGGNILRVADLELDLLRRRVARGNSRIDLTAKEFGLLTFMMRREGEVLSRLVLAE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +     NVVE  + +LR K+ +      + + R +GY+I++
Sbjct: 181 QVWDM-NFNSNTNVVEVAVRRLRAKVDDPFDIKLLHTVRGMGYTIEY 226


>gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
 gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRML--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E    RV               G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|221640766|ref|YP_002527028.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221161547|gb|ACM02527.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 228

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    S+       +     +  ++  L       +
Sbjct: 7   ILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGL--PDGDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQVP+I +S        +   D+G  D V KP    E     R     R  
Sbjct: 65  EVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+G
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              E  +   +  +I +LR KL +       + ++  +GY  
Sbjct: 185 PAHEE-DSQYLRVYIRQLRAKLGDDAADPLWIFTEPGIGYRF 225


>gi|207739769|ref|YP_002258162.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206593151|emb|CAQ60057.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 245

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G+             L  S + D+  ++          
Sbjct: 17  LILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVLLDV--QMPHVDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            +    IR     P+I ++        L     G DD V KP +  E           +R
Sbjct: 75  WKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSR 134

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             A  R  +V         +           Q  V  L   E ++L  L     +  ++ 
Sbjct: 135 SDAGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHVLALTLTEFKLLAQLARAPKRVFSRA 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +A   L +    E  V+SHISKLRKKL +          R +GY +
Sbjct: 195 ELLAAC--LPEGDTLERTVDSHISKLRKKLEDLGVEGMPVGVRGVGYRL 241


>gi|189024635|ref|YP_001935403.1| transcriptional regulator [Brucella abortus S19]
 gi|306844522|ref|ZP_07477111.1| Protein petR [Brucella sp. BO1]
 gi|189020207|gb|ACD72929.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|306275133|gb|EFM56889.1| Protein petR [Brucella sp. BO1]
          Length = 235

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 16  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGV 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 74  SLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 133

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       G+ + + ++    
Sbjct: 134 PAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGETIPRHELT--- 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 191 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 232


>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++  +      G  +                + D+  ++      GE  
Sbjct: 9   LISVVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREKPDLVVLDIM--MPGEDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +RA +Q+P+I ++        +   + G DD + KP + RE+LAR+ A+ RR+ 
Sbjct: 67  LALCRHLRAETQIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRRVG 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV---------FPLPRRERRILEYLMANRGKRVAKT 171
                  T        G                   PL   E R+L   + + GK + + 
Sbjct: 127 TLPEIRSTHQAVQVKFGDKTLDVRRHEVTGPDGVAIPLSTAEFRLLCVFLDHPGKVLNRD 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +     G  +  V +  +++ +S+LR+K+         + +    GY  
Sbjct: 187 ALLDLTSGR-EADVWDRSIDNQVSRLRRKIEPDSKNPTLIKTHWGDGYCF 235


>gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 223

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G S++  ++        +S   DV  I+  L       L
Sbjct: 3   LLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRML--PEIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+ +    R    +G+   L  RE  ILE+LM  +G+   +T +  AI+
Sbjct: 121 ALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFTTELIKTVRGAGYRID 222


>gi|116696122|ref|YP_841698.1| response regulator [Ralstonia eutropha H16]
 gi|113530621|emb|CAJ96968.1| response regulator of copper response,OmpR-family [Ralstonia
           eutropha H16]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++   +    + L  +   D+  ++  L        
Sbjct: 3   LLVVEDESKTGEYLRQGLTEAGFVVDLVANGLDGQHLAMTEPYDLVILDVML--PDVDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQALRAAEIAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ +R +   + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQMALDRIQVADLVLDLGRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + +   + NV++  I +LR K+ ++     + + R +GY +
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDEFEPKLIQTVRGMGYVL 221


>gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++          G  +                  D+  ++  L       + 
Sbjct: 24  LLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGHDLLILDVML--PHLDGIG 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----------- 111
           L R IR  SQ P++ +S        +   ++G DD V KP+    ++AR           
Sbjct: 82  LCRRIRESSQAPILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRRAAPA 141

Query: 112 --VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                                + V +       QGE   L   E R+L    A  G  ++
Sbjct: 142 ADRDRDREEGPAREAVWVFRDLEVDTLALQVRRQGEPVALTPTELRLLLEFTAQPGVALS 201

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+  + +LRKK+    G D V++ R  GY  
Sbjct: 202 RQRLLREVWD-YGWEGDSRVVDLTVQRLRKKI----GADHVETVRGHGYRF 247


>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++           L      ++  ++      G   +
Sbjct: 4   ILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEVNLMIVDVM--MPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113
                +R  S +P+I +S        +   + G DD + KP +          ++     
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+   + G + +  + ++  V GE   L   E  IL  L+ N GK  +  QI
Sbjct: 122 LGNLNQQGSSQVYKCGGLMINDENKEVTVDGEPIKLTPIEYNILLLLVKNAGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   D    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YEKIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
 gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
          Length = 247

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++      G   LE
Sbjct: 26  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIM--MPGFDGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 84  LLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 143

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 144 AAIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 204 -NYDFGGQANIVELYISYLRKKI-DVGREPMIHTVRGAGYVL 243


>gi|229822256|ref|YP_002883782.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229568169|gb|ACQ82020.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +    +          A  DV  ++  L       L
Sbjct: 10  ILVVDDDAGLLRALGINLRAHGWEVTTAATGAAGLDAAGRAHPDVILLDLGL--PDIGGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+   IR  SQVP+I +S        +D  D+G DD V KP         + A V     
Sbjct: 68  EVIEGIRGWSQVPIIVLSARQLGDDKVDALDAGADDYVTKPFAMPELLARLRAAVRRSAL 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G + +    R+    GE   L   E  +LE L+ +RG+ V +  +   +
Sbjct: 128 VGEPDEPVVSAGDLEIDLARREVRRSGEPVRLSPTEWALLEQLVQHRGRVVGREHLLREV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
           +G      E + +  ++++LR+KL +       + +   +GY  + 
Sbjct: 188 WGPTAT-REGHYLRVYVAQLRRKLEDDAAAPRHILTSPGMGYRFEE 232


>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|221196519|ref|ZP_03569566.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2M]
 gi|221203188|ref|ZP_03576207.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2]
 gi|221177122|gb|EEE09550.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2]
 gi|221183073|gb|EEE15473.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2M]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFPEKLLHTIRGMGYVLE 220


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +           L  S   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVML--PRLNGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           E+ R IR   + VP++ ++   ++   +   D+G DD + KP    E    +        
Sbjct: 63  EVLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRKS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   + + +D  +  V GE   L  RE  +L  LM N+   + + ++ + +
Sbjct: 123 TDRQETHKLEIHGVSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E N+++ +I  LR K+ ++ G   + + R +GY I
Sbjct: 183 CG-YEYVGETNIIDVYIRYLRTKIDDRFGIKLITTVRGVGYVI 224


>gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
 gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
          Length = 229

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  ++  +  E    L  +    +  ++  L        
Sbjct: 3   LLMIDDDTGLCELLSEYLSSQGFEIQSVHDGEQGLKLAQANDYALILLDVML--PTIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ + +R     P+I ++        +   + G DD + KP +HRE       I  R+  
Sbjct: 61  EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           I      + N+     + +    R+  +      L   E  IL  L  N  + V+K QI 
Sbjct: 121 INSLNINTTNKLLVNGVTINLAAREASIDENTLTLTGTEYEILALLCKNASQVVSKEQIS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    + +   ++ H+S +RKK+   +  + + + R  GY  
Sbjct: 181 EEVLGRRLASFD-RSIDMHVSNIRKKIAEHIKTERIKTMRGSGYVF 225


>gi|21224215|ref|NP_629994.1| turgor pressure regulator [Streptomyces coelicolor A3(2)]
 gi|256784703|ref|ZP_05523134.1| turgor pressure regulator [Streptomyces lividans TK24]
 gi|289768589|ref|ZP_06527967.1| turgor pressure regulator [Streptomyces lividans TK24]
 gi|2815358|emb|CAA16481.1| putative turgor pressure regulator [Streptomyces coelicolor A3(2)]
 gi|289698788|gb|EFD66217.1| turgor pressure regulator [Streptomyces lividans TK24]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +    +         ++  +       L ++   DV  ++  L       +E
Sbjct: 5   LVIDDEPQIVRALVINLKARHYEVDAAHDGATALQLAAARHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  ++VP++ +S   S    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGWTRVPILVLSARHSSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +T    V    +     G    L   E  +LE L+ N G+ V++ Q+   +
Sbjct: 123 PGGEDEVVVDTPEFTVDLAAKKVNRGGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +G      E N +  ++++LR+KL  +        ++  +GY  + 
Sbjct: 183 WGPS-YGTETNYLRVYMAQLRRKLEADPAHPRHFITEPGMGYRFEK 227


>gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 247

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   ++ S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGRQLKSTLEQNGYAVDLSTDGEDGHFMGSTEEYDAVVLDLGL--PEIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +     +   + P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNSSAELIAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS++
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GPDVITTIRGLGYSLN 217


>gi|326792369|ref|YP_004310190.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543133|gb|ADZ84992.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++     F      +   N  +    +      D+  ++      G    
Sbjct: 4   ILLVEDEKRMQEIISDYFQVKDCKVICVNQGKEALSILEKESFDLILLDVM--MPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
            + + +R   + P+I I+     +  L  ++ G DD V KP     + A+V       + 
Sbjct: 62  TVCKEVRLRYETPIIFITAKSDEEDQLYGYELGADDYVTKPFSLGVLYAKVNSLIKRAKG 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  ++ +   I +     +  V GE   L   E R+L Y M N+ + + + Q+   ++G
Sbjct: 122 TIIEDKLKVNDICIDCKKLEVTVGGEEIKLAPMEYRMLVYFMRNKNQVITRDQLIVRLWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    + V+++H+ KLRK L        + +   +GY ++ 
Sbjct: 182 -YDFEGNDRVIDTHVKKLRKALGKSG--KAIRTIMKVGYKLEV 221


>gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 226

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ +   ++  + G   +  +          S   D+  ++  L   G   +
Sbjct: 3   ILVIEDEFLLSESVKSILTEHGFEADTVSDGAEGLIYAKSGAYDLLILDVML--PGMNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R     +P++ ++    L   ++  ++G D  + KP   RE++A V A+ RR  
Sbjct: 61  ALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNALLRRQG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N+   G   +  D            L  RE  ++  LM  +GK + K QI S ++G 
Sbjct: 121 AEVNQLSFGNTSLDLDSGTLLCGERELRLSAREFDVMRLLMQAKGKNLRKEQILSRVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    EN VE ++  LRKKL++      + S R LGY ++
Sbjct: 180 FDSEATENHVEVYVGFLRKKLKSIGSDLSIVSVRRLGYHLE 220


>gi|228911099|ref|ZP_04074906.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923993|ref|ZP_04087270.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835792|gb|EEM81156.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848603|gb|EEM93450.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 219

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD + +++        +G  +             +    DV  ++  L        EL 
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGYELL 58

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIYRR 118
           R+ R     +P++ ++    +   L     G DD V KP ++     R            
Sbjct: 59  RLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKTE 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++   ++
Sbjct: 119 TAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 179 G-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 218


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR      P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120]
 gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120]
          Length = 610

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+             +++     E    L S    ++  ++  L       +
Sbjct: 3   ILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVL--PKLDGI 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +R      LI  ++   S    +   D+G DD V KP   +E+ AR+ A + R  
Sbjct: 61  SLCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +R+     +     +   L  +E  ILE  + N  +  ++  I   ++ 
Sbjct: 121 TSLPPVLAWGSLRLDPSSCEVTYADKPLNLTAKEFSILELFLRNNQRTFSRGAIVEKLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              +  EEN ++SHI  LR+KL+        +++   +GY +
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLQAAGANYAFIETVYGMGYRL 222



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +         G++++     ++          D+  ++  +    G ++
Sbjct: 477 IMIVDDNLHLLNFLHRYLEALGITVKALKEPQYFWDTLIEFSPDLLILDLEIPHINGIEL 536

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
            ++ R       +P++ + +  ++ T    F  G DD 
Sbjct: 537 CQVVRNDPYWQFLPVLFLVNNFNVNTFEKIFAVGADDW 574


>gi|329927731|ref|ZP_08281843.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938309|gb|EGG34702.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 223

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + ++   L      +++ ++      G    
Sbjct: 3   ILVVDDDYDILQLVTIHLTREGYEVLQAQNGQYALKLLEETEVNLAIVDVM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +I+    ++P+I ++    L      F SG +D + KP   +E+L RVA + RR   
Sbjct: 61  SLTKILTKELEIPVILLTAKGQLSDKEQGFRSGSEDYLVKPFEPKELLFRVAVVLRRYGR 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     + G +++  +  +  +  E    P +E  +L  L     K   ++ +    +G 
Sbjct: 121 ALESVLKVGNVKINRNDFEVIINDETILFPLKEFELLTMLATRVNKVTPRSLLLEQAWGE 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    E  + +H++++R++L+       + + R +GY ++
Sbjct: 181 -NYEGHEMTLNTHMNRIRERLKRYGAAVEIQTIRGIGYRLE 220


>gi|311896069|dbj|BAJ28477.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 226

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++  +       L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDSAHDGASALELAAARHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  ++VP+I +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIRGLRGWTRVPIIVLSARHASDEKVEALDAGADDYVTKPFGMDELLARMRAAVRRAEPV 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               E    T    V    +    QG    L   E  +LE L+ N G+ V++TQ+   ++
Sbjct: 123 TAEGESVVATDSFTVDLAAKKVNRQGADVRLTPTEWHLLEVLVRNSGRLVSQTQLLQEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 G-PAYRKETNYLRVYLAQLRRKLEADPSHPRHFITEPGMGYRFE 225


>gi|188588682|ref|YP_001919802.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188498963|gb|ACD52099.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +           L  S   D+  ++  L    +   
Sbjct: 3   ILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLML--PDKDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREI 108
           E+    ++ +S+VP+I +S    L   L     G DD + KP               R  
Sbjct: 61  EVIHEFQSINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+          +N+  E G I++    R   +  +       E  I+  ++ N  K  
Sbjct: 121 KAKAIGKNEIKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + ++   I+G +        V+ HI ++R+KL      D + +   +GY ++ 
Sbjct: 181 TREELLDKIWG-YSFVGNTRAVDIHIKRIRQKL--IGNEDVIKTIYGVGYRLEV 231


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         ++G  +    +             D+  ++  L       L
Sbjct: 7   LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRL--PDLSGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+   +R    ++P++ ++   +++  +    +G DD + KP    E+            
Sbjct: 65  EVCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVD 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R E GP+ +    R     GE   L   E  +L +LMA  G+ +++  I   ++
Sbjct: 125 RPSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G  D     N+++ +++ +R+KL       P+++ R +GY 
Sbjct: 185 G-HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224


>gi|90422897|ref|YP_531267.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104911|gb|ABD86948.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 241

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S        +    D+  ++      GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAKSAADARSKLNGLYFDLLILDVM--MPGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARFIRTTSSVPIVMLTARHEAESRIEGLQLGADDYVAKPFEPRELLLRIGNILKRAMP 138

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP     +  +     E+  L  RER +L  L A+ G+ V + ++    
Sbjct: 139 VAAVKQESISFGPYVYHLERGELRQGEEIIHLTDRERDMLRVLAASPGETVPRGELT--- 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  V E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 196 --GGGGTVNERAVDVQINRLRRKIEQDPANPLFLQAVRGIGYRL 237


>gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 282

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 43  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGL--PKMSGL 100

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 221 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLEK 260


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         ++G  +   +  E      +S    V  ++      G   L 
Sbjct: 10  LLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVM--MPGMDGLA 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R ++   +   +I ++    +   +    +G DD + KP    E+LAR+ A    +  
Sbjct: 68  VCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQFP 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP  +    ++    GE   L   E ++L+ L+   G  ++K+ I + ++  
Sbjct: 128 SLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E+N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226


>gi|225389850|ref|ZP_03759574.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme
           DSM 15981]
 gi|225044097|gb|EEG54343.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +           G       +         S   D+  ++     +G    
Sbjct: 6   ILIADDDQEILTITSRSLQSQGYLTFECRNGIDAYQAIVSQPFDLILLDIN--MEGLDGF 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            + + +R      P++ I+        +     G DD + KP     + ARV       +
Sbjct: 64  RIIQKVREQQIFTPILIITGNAEEYNEVFGLSIGADDYIIKPFRPSALCARVKALLRRQQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +  N   + GP ++  +            L  +ER ++++ + N     +K Q+++A+
Sbjct: 124 QFQKDNATLKAGPFQMDRESYSFYKNNVELVLTPKERLLMQHFLHNVNHVFSKEQLYTAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   D  V++N V   I  LR+K+ +       + +   +GY  
Sbjct: 184 W--KDNCVDDNTVMVTIRNLRQKIEDDPKSPKYLLTVYGIGYKF 225


>gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 235

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G ++   ++      +  +    ++ ++          ++
Sbjct: 7   LIVEDEKEICDAIAIYLNNQGYNVFKAHNGIEGLDVIKNETIHLAIVDIM--MPKMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 65  MTMKLRGEFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N       +  +            ++  V  E   L   E +IL  L+ N G+  +  +
Sbjct: 125 LNVINNLEEKNNNFIIDGLELNAETKEVFVDEEPVKLTPIEFKILHLLIKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYEKVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis
           SK2]
 gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax
           borkumensis SK2]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +               +  +S +    +          ++  L       +
Sbjct: 4   ILIVEDEPRLSQLVADYLHHAHFQTKQTDSAKAAMAMAHEQSFQAIILDLML--PDGDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + IR HS VP+I ++        L   + G DD + KP   RE++ARV         
Sbjct: 62  EVCKTIRQHSNVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRANP 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                  +       +          +   L   E  +L  L    G+  ++ Q+   IY
Sbjct: 122 ESPEQEHSLQLDEERYEAILKQPQGQQRIGLTAIEFALLSTLSRQPGRIWSRDQLMDEIY 181

Query: 179 GLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
                 V +  ++SHI KLR+KL   ++   D + S   +GY ++
Sbjct: 182 NDH-RVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|148652012|ref|YP_001279105.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571096|gb|ABQ93155.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 238

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   G   L
Sbjct: 12  ILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVML--PGSDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP   R +LAR       +  
Sbjct: 70  TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    R E G + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 130 APSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 190 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238


>gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVM--MPSMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|51596319|ref|YP_070510.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186895361|ref|YP_001872473.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis PB1/+]
 gi|51589601|emb|CAH21231.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186698387|gb|ACC89016.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis PB1/+]
          Length = 230

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGNDGLYLALEYDYDTIVLDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIEGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNNIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219


>gi|315657068|ref|ZP_07909953.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492460|gb|EFU82066.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF   +           ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYQEFREAMMELLPEMILLDIML--PGVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------A 110
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E++        
Sbjct: 59  IQILRRIRANPETKAIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RV  +             G I +        V+G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVPRLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLG--PAAKHIETVRGVGYKI 225


>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
           str. Paraca]
          Length = 587

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +              ++     E       S    +  ++  L       +
Sbjct: 3   ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIML--PKLNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+H+  +P++ ++   S +  +   D+G DD + KPI   E++AR+ A+ RR  
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S            +  +      +   PL  +E  ++E  + +  +  +   I   ++ 
Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +E   +N V +HI  LR KL++  G    +++   +GY I
Sbjct: 181 I-EEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           D   + +   AL    G+ ++  N+      +   +  D+  I+  +    G  + ++ R
Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552

Query: 66  IIRAHSQVPLIGISDY 81
                  +P++ ++++
Sbjct: 553 NEPRWRYLPILVLTNH 568



 Score = 42.3 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 1/120 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D   ++ +  I      G+       +     +    +  +  +E       E  L
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   I   H ++P++  S   S    L     G    + KP+   +I+  V  I     
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIVTGILNHHN 483


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++  N  +           D+  ++  L        
Sbjct: 5   ILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVML--PKMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++    +   +  FD G DD + KP  + E++ARV A+ RR  +
Sbjct: 63  EVCKRIREDSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRSTL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N + E                        L ++E  +L+YL+ N+G  + +  I   ++
Sbjct: 123 KNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD+    N+++ +I  LR K+        + +KR +G+  
Sbjct: 183 G-FDQIGNNNILDLYIKYLRDKIDKPYLRKFIQTKRGIGFVF 223


>gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D        +    + G         E           DV  ++  +    G  +
Sbjct: 3   ILIVEDDLEAAGVMVRGLTEAGHDCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGVTL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R      + P++ +S    +   +D   +G DD + KP    E++AR+ A+ RR  
Sbjct: 63  VETLRR--EGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRD 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +    R     G+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGSVNTLLRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -HYHFDPQTNVIDVHISRLRSKIDKGFDRPMLQTVRGAGYRLD 222


>gi|153813098|ref|ZP_01965766.1| hypothetical protein RUMOBE_03506 [Ruminococcus obeum ATCC 29174]
 gi|149830753|gb|EDM85843.1| hypothetical protein RUMOBE_03506 [Ruminococcus obeum ATCC 29174]
          Length = 219

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G         E  + L     ED       ++  G+   
Sbjct: 5   ILVIEDDRAISELLCMNLEAAGYETVAAYDGEEAQRLL-LWHEDADMAVVDIMLPGKDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L         +P++ ++    + + +     G +D + KP    E+L R+  +  R   
Sbjct: 64  ALM-EDFKKKDIPVLYLTAKDDVASKVKGLKLGAEDYMVKPFEMLELLVRIEKVLERTGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        I V          G    L   E  +   L+ N+   + + ++   ++G  
Sbjct: 123 ARKVLMIRNIMVDVQSHQVLKDGIPVNLKPMEYDLFVLLLQNKNIALGREELLKRVWGE- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   E   V+ HI +LRKKL        + +   LGY ++ 
Sbjct: 182 DYLGESRTVDVHIGQLRKKLELYDE---IKTIPKLGYRLEE 219


>gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
 gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++           +    +ED+  +   ++      +
Sbjct: 8   ILVCDDDKDIVEAIDIYLSKEGYNVIKAYDGMEAMEILK--KEDIQLLLIDVMMPRLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   D G DD + KP +  E++ARV +  RR   
Sbjct: 66  RATLKIREKSSIPIIILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRRYTR 125

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               AE               + ++ +V GE+  L   E  IL +L+ N G+     QI+
Sbjct: 126 LGTIAEPKSNVYSVGGLEIDDECKEVKVDGEIVKLTPFEYNILLFLVKNPGRVFTIDQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            A++     A + N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 186 EAVWNEEAVAAD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 233


>gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1]
 gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1]
          Length = 239

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSQEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVF 232


>gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 226

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V    +    +    ++  +  +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDHDVASYLVKGLRESDFVVDHADDGKKGMLMAASEEYDIMIVDRML--PGMDGLA 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + + +RA     P++ +S    +   ++    G DD + KP    E    +  +    R+
Sbjct: 62  IIKTVRATGNQVPILILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNRQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R  +  G+   +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 AAETETVLHVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTVRGAGYML 222


>gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    + G   +         +  +    D+  ++  L       L
Sbjct: 3   ILVIEDDKEVAAHLLKGLREAGHVADSVADGRDGLFQAAGEAYDLLIVDRML--PNVDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            + R +RA    VP++ +S    +   +    +G DD + KP    E    +  +     
Sbjct: 61  TIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRTA 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R   G + +    R          L  RE R+LEYLM +  + V +T +   +
Sbjct: 121 GSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +    + NVV+ HIS+LR+K+        +++ R  GY +  N
Sbjct: 181 WD-YHFDPQTNVVDVHISRLRRKMDEGFAQPFLETVRGAGYVLRTN 225


>gi|228942401|ref|ZP_04104939.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975334|ref|ZP_04135890.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981970|ref|ZP_04142264.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777731|gb|EEM26004.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784316|gb|EEM32339.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817242|gb|EEM63329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 219

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD + +++        +G  +             +    DV  ++  L        EL 
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGYELL 58

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIYRR 118
           R+ R     +P++ ++    +   L     G DD V KP ++     R            
Sbjct: 59  RLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKTE 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++   ++
Sbjct: 119 NAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 179 G-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 218


>gi|307153397|ref|YP_003888781.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306983625|gb|ADN15506.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 231

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D        +         L+  ++      +  + + D+  ++  L        
Sbjct: 6   ILVVEDDTPTLKLIVRFLQHKSYQLQMASNGLSALAVFDNFQPDLVILDINL--PDVLGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117
           E+   ++    V ++ ++     +   + F  G DD + KP H  E+  R+         
Sbjct: 64  EICEQMQLKRDVCILILTCRTQQEDIAEAFRKGADDYITKPFHLEELQWRIQALLKRRRN 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    +     + +  + R+  V  ++  +   E  ++ +L +N  +  ++ ++   +
Sbjct: 124 NSEQVLEQIIFPNLIIDPNRREIIVNDQLLNVTSLEFELIYFLASNSERVWSRAELIEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +  +    +  VV+ HI ++RKKL+  L     + + R +GY  ++
Sbjct: 184 W-KYSFTGDHRVVDVHIGQIRKKLQAFLSPPLFIQTVRGIGYKFEY 228


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D    ++     E       S   D+  ++  L       +
Sbjct: 3   ILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVML--PKLNGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A    P++ ++   +    +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +          R+  + ++    G+   L  +E  +LE  + N    + + QI   ++ 
Sbjct: 121 TALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D    E  V+ HI +LRKKLR+     D +++   LGY +
Sbjct: 181 FED-PPSEEAVKVHIKELRKKLRSVGASPDSIETVYGLGYRL 221


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +     E    L  +   D+  ++  L   G   L
Sbjct: 3   ILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNL--PGIDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R  R  +   P++ +S    +Q  ++  D G +D + KP H  E+ AR+ +   R+ 
Sbjct: 61  EILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I   +  R+  V G    L R+E  +LEY + +R + ++  ++   ++ 
Sbjct: 121 IQEDVCLRCSRITFDTRTREASVDGTPLALTRKESALLEYFLLHRNRIISPEEMIEHLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
               +   N +  HIS LRKKLR  LG+DP+ +K   GY ++ 
Sbjct: 181 GSVNSF-SNSIRVHISSLRKKLRTALGYDPIQNKIGQGYILEE 222


>gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G      NS      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  +   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYNDKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|168491488|ref|ZP_02715631.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183574210|gb|EDT94738.1| response regulator [Streptococcus pneumoniae CDC0288-04]
          Length = 225

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYTGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|161520860|ref|YP_001584287.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189352957|ref|YP_001948584.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|221210152|ref|ZP_03583133.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD1]
 gi|160344910|gb|ABX17995.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189336979|dbj|BAG46048.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|221170840|gb|EEE03306.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD1]
          Length = 232

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFPEKLLHTIRGMGYVLE 220


>gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct]
          Length = 226

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY  
Sbjct: 180 PDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGYLF 220


>gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
          Length = 234

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+      L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAATGEDGLELFTQGGVDLV--LLDLMLPGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE            ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQM 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A        +     G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VAESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + +     +  ++          +
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIM--MPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I IS        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  KATVKIREERNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVT 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N  +T           + +  ++ ++ GE   +   E +I+E L+ N+G+  +  +I+
Sbjct: 122 LGNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++   +    EN V  HI ++R+K+  N      +     +GY I+ 
Sbjct: 182 EKVWNE-ESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIEK 229


>gi|222152383|ref|YP_002561558.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113194|emb|CAR40652.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 229

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L DD   ++D  I     DG  ++ F + +         + D+  ++      G   
Sbjct: 4   LIYLADDEKNIRDLLIPFLEHDGFKVKAFENGDLLYQEYLINQPDLIILDIM--MPGSDG 61

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           L + + IR      P+I ++   S    +  F +G DD   KP         + A +   
Sbjct: 62  LTIMKKIRQRGDQLPIIMLTARDSDADFITAFQAGSDDYFTKPFSPIKLVLHVKALLKRT 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   +   + +  D R   +  +   L + E  +L  L+        + ++ +
Sbjct: 122 VSTPLEQSTLFQYKGLSLNLDRRLCLLDDKELALTKTEFDLLSLLIQKPETAFPRDELLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  +E   V+  I +LRKKL+       +++    G+ +
Sbjct: 182 RIWGFED--IESRAVDDTIKRLRKKLKAHHSPVIIETVWGYGFKL 224


>gi|187780065|ref|ZP_02996538.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
 gi|187773690|gb|EDU37492.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++   +S++  +   S  + D+  ++  L        
Sbjct: 4   ILLVEDNISLNRGIQFSLMKEGYNVIAIDSIKEAQQKLSKEKIDLIILDVNL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   
Sbjct: 62  DYCLHIRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSK 121

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++           + +    E   +   L + E ++L+Y M N  K ++K QI   ++ 
Sbjct: 122 DSDFNIIQSKDIVFYINEMKVEKYEKEIFLSKTELKLLQYFMKNYQKILSKEQILENLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  E + EN V  +I ++R+K+       + + + R +GY 
Sbjct: 182 IDGEFINENTVAVNIRRIREKIEEIPSKPEYIQTIRGIGYV 222


>gi|187933916|ref|YP_001884616.1| PhoP family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722069|gb|ACD23290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 92/234 (39%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +           L  S   D+  ++  L    +   
Sbjct: 3   ILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLML--PDKDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+    ++ +S++P+I +S    L   L     G DD + KP   RE++ R+ AI RR+ 
Sbjct: 61  EVIHEFQSINSEIPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 120 -----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        +N+  E G I++    R   +  +       E  I+  ++ N  K  
Sbjct: 121 KAKAIGKSEVKNKTNDIIEKGFIKIIIPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + ++   I+G +        V+ HI ++R+KL      D + +   +GY ++ 
Sbjct: 181 TREELLDKIWG-YSFVGNTRAVDIHIKRIRQKL--VGNEDVIKTIYGVGYRLEV 231


>gi|154506203|ref|ZP_02042941.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149]
 gi|210612116|ref|ZP_03289175.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787]
 gi|225027853|ref|ZP_03717045.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353]
 gi|257414190|ref|ZP_04745516.2| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|153793702|gb|EDN76122.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149]
 gi|210151719|gb|EEA82726.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787]
 gi|224954800|gb|EEG36009.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353]
 gi|257200898|gb|EEU99182.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
          Length = 245

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F                       + D+  ++          +
Sbjct: 26  ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R+IR+    P++ ++        ++   SG DD + KP   RE+ AR+        R
Sbjct: 83  EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 142

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   + G      + E +I+E+L  + G+   K +I++ + 
Sbjct: 143 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQVC 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   +   +   + ++RKK+ +    + +++   +GY 
Sbjct: 203 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 242


>gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  +           +    +  ++ ++      G    E
Sbjct: 10  LLIDDEPNILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVM--MPGMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121
           + ++++      +I ++    +   +     G DD + KP    E+LAR+   +  +   
Sbjct: 68  VCKMLKKTENTAIIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHARVRNQFPN 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP R+    ++      V  L   E  +L +++ N+G  ++KT+I   ++G +
Sbjct: 128 LLGEVVIGPFRIDDRRKEIFYHQVVLELSPTEYELLRFMVLNQGLVLSKTKILDKVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +EN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 187 DFVGDENIVEVYIRSLRDKLNDK-EHKLIRTLRGSGYRVD 225


>gi|297197388|ref|ZP_06914785.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297146701|gb|EFH28290.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 233

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  +  +        +G +    +              D+  ++  L         
Sbjct: 6   LVAEDDEMQAELIRRSLLAEGHTATVVHDGRAALDAARRVAPDLVVLDLML--PVIDGFG 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R++R  + +P++ ++        L   + G DD + KP   RE++AR+  + RR    
Sbjct: 64  VCRVLRRDADIPVVMLTARSDEDDVLLGLELGADDYMTKPYSPRELMARIRTVLRRSGRG 123

Query: 123 NNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            V     +    G        E  IL  ++A   +  ++ Q+  
Sbjct: 124 GVADRREDPVVRAAGLAVDPVRHEVRCDGAPVECTPAEFEILLAMVAEPERVFSRRQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              G  D A  E  V+ HI  LR+K+         + +   +GY +
Sbjct: 184 VTRGT-DRASTERAVDVHIMNLRRKIEADPRRPVRLLTVFGVGYKL 228


>gi|256849457|ref|ZP_05554889.1| DNA-binding response regulator [Lactobacillus crispatus MV-1A-US]
 gi|256713573|gb|EEU28562.1| DNA-binding response regulator [Lactobacillus crispatus MV-1A-US]
          Length = 225

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   ++   +         + GF        +  + R D+  ++  L    G ++
Sbjct: 4   IWCVEDDESIRKIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPDEDGSEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           L   +   A   +P+I  S   +    +   DSG DD + KP    E+++RV A+  R  
Sbjct: 64  LHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I+ 
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 183 ETGFYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 226

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + +          +G+ +E  +S             D   ++  +       L 
Sbjct: 4   LVVEDESKLTSLIEKGLRCEGIEVESTSSGLEALDQVKRFSYDAVVLDIMIH--ELDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + + +RA S   P+I I+        ++  D+G DD V KP    E++AR+ A++RR   
Sbjct: 62  VLKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSLG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + V    R+    G    +P +E  +L +LM   G+   + QIF  ++  
Sbjct: 122 QGLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   E N+V+ +I +LR+K+        +++ R +GY I
Sbjct: 181 FDFDPETNLVDVYIGRLRRKIDQGDSKKLLETVRGVGYRI 220


>gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 239

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638]
 gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 219

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGLKAGLTKMGFSVDWFTDGGTGKTALYSAPYDAVVLDLTL--PGMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  DILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +       ++ GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTRSELRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL +      + +   +GY++
Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKLGSH----FIRTVHGIGYTL 216


>gi|332559612|ref|ZP_08413934.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332277324|gb|EGJ22639.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 232

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++      GE  +
Sbjct: 8   LLVVDDDERIRSLLQKFLIRNGFLISTARDAAQARRLLDGLEFDMIVLDVM--MPGEDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116
            L R +R     P++ ++        ++  ++G DD + KP   +E              
Sbjct: 66  SLTRSLREDLATPILLLTARGETLHRIEGLEAGADDYLAKPFEPKELLLRINAILRRVPS 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R ++       G +R   +  +     E   L   E  ++    A  G+ V++ ++   
Sbjct: 126 ARPELGPKVLHLGDVRYDLERGELWRGTEPVRLTATEAALMRIFAAQPGEAVSREKLVGD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + G  D   +E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 L-GRDDSQSQERAVDVQITRLRRKIEVDPRQPRYLQTVRGSGYML 229


>gi|325272774|ref|ZP_08139118.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102081|gb|EGB99583.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 232

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +               ++ D+  ++  L   GE  L
Sbjct: 8   ILIVEDDPRLAELTAEYLQANGFEVAVEGDGARAVRRIVDSQPDLVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            + R  R     P++ ++        +   D G DD V KP+  R     +  +      
Sbjct: 66  SICRRARNQYPGPILMLTARSDELDQIHGLDLGADDYVCKPVRPRLLLARIQALLRRSEA 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L         G + + +  R+  +  ++  L   E  +L  L +N G+ +++ QIF+A+ 
Sbjct: 126 LDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLSREQIFTALR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+     ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 186 GVG-YDGQDRSIDIRISRIRPKIGDDPLQPRLIKTLRSKGYLF 227


>gi|309800488|ref|ZP_07694642.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308115883|gb|EFO53405.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 214

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 14/215 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
             +G  +    +         + + D+  ++  L       LE+ + IR  S VP+I +S
Sbjct: 2   TKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGLEVAKTIRKTSSVPIIMLS 59

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----------AIYRRLKVSNNRAETG 129
              S    +   + G DD V KP  +RE+ ARV           A  +  +      + G
Sbjct: 60  AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTELASADNQEPETKLQSLQIG 119

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D    +  GE   L  RE  +L +L ++ G+ + +  +   ++G +D   +   
Sbjct: 120 DLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITREHLLETVWG-YDYFGDVRT 178

Query: 190 VESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 179 VDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 213


>gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
 gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
          Length = 240

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSSEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|300864987|ref|ZP_07109818.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
 gi|300337022|emb|CBN54968.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
          Length = 620

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD  L+      + G +  +++  +  +    L ++   D+  ++  +       +
Sbjct: 3   ILLVDDDRLLSATLAKVLGVNHYAIDLASDGQAGLELATAIEYDLILLDVQV--PKLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110
            L R +R+     P++ ++   S    +  FD+G DD ++KP                  
Sbjct: 61  SLCRQLRSQGYRKPILLLTANDSDADVVAGFDAGADDYISKPCATEVLLARIRTLLRRSQ 120

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++       +  N    G + +  D        ++  L   E  +LE  + N  +  ++
Sbjct: 121 ALSPRDSAQNLLANTLTWGNLCLDLDSGRVTFDKQIISLTATEYNLLELFLRNPDRIFSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + I   ++GL D A  +  + +HI  +RKKL+      + +++   +GY +
Sbjct: 181 SAILDRLWGLED-APTDRAIITHIKDVRKKLKAGGLSEEIIETVYGMGYRL 230



 Score = 55.4 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  L+            + +      +    +  S + D+  ++  +    G ++ 
Sbjct: 501 LIVDDDVLMLARLSDFLTPWAIEVITLTEPQQFWEVLISTKPDLVVLDIEMPFINGLELC 560

Query: 62  ELPRIIRAHSQVPLIGISDY 81
           ++ R       +P++ ++ +
Sbjct: 561 QVVRQDIQWENLPILVVTAH 580



 Score = 52.0 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++ +   A     G+ ++  ++L     L + +  DV  ++       E  L
Sbjct: 375 LLVVDDDIVLTERLKAESEAWGLRIKIASNLTNARALLALSMPDVMLLDLSFAETEEDGL 434

Query: 62  ELPRIIRAHSQV 73
            L + +   S  
Sbjct: 435 TLLQEVTKRSPH 446


>gi|329930122|ref|ZP_08283741.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|328935381|gb|EGG31856.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 242

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +  G       +  S    + +   + + +   +  +     L        E
Sbjct: 19  LLVEDDKTIASGLEYSLQQERYSTIICHDVASAKQVLAEDIDQFALCLFDLQLPDGSGYE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           L ++++    +P+I ++        +   D G DD + KP   RE    +  V   Y++ 
Sbjct: 79  LCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQKP 138

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+  +   IR+ +        G    L   E R+L     + G+ +++ Q+   I+ 
Sbjct: 139 SQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLEQIWD 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  + V +N +  +I +LR+KL +  G    + + R LGY 
Sbjct: 199 VAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYK 239


>gi|312195395|ref|YP_004015456.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311226731|gb|ADP79586.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 219

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 5/218 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +          +G +++  ++ +   W+ +  R D   ++  L         + R
Sbjct: 2   EDEERLAGLLRGGLAGEGFAVDVAHNGQEGLWMATENRYDAIVLDVMLPL--LNGYAVCR 59

Query: 66  IIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R      P++ ++         +  D+G DD ++KP  +  +LAR+ A+ RR      
Sbjct: 60  RLREDGNWTPIMMLTAKDGEYDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGGRERP 119

Query: 125 RAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              T     V   G           L  +E  +L  L    G+ V+K ++    +  F  
Sbjct: 120 VVLTAGDLAVDPAGLRCRRGETEIALTPKEFAVLHALARRVGEVVSKAELLEQAWD-FAY 178

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + ++VE +IS LR+K+    G   + + R  GY +D
Sbjct: 179 DGDPSIVEVYISALRRKIDAPFGRASLVTVRGAGYRLD 216


>gi|289663273|ref|ZP_06484854.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 229

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 80/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A       A    DG  +      E    L      D+  ++  L       +E
Sbjct: 7   LLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I ++        L     G DD V KP   +E++ARV A+ RR    
Sbjct: 65  VLSAIRRAGDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVAV 124

Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E       S          +          L   E  +L  L+    K   ++++ 
Sbjct: 125 RAPGEPLQHGRLSVDPAAVVASVQGDNGDSVALDLTPTEFNLLALLLKTPFKAFTRSELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L D    E VV+SHI  LR+KL        + + R +GY  
Sbjct: 185 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 228


>gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+      L  + + D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +     +     +   + + +  R      +   L +RE  +L  L+ N+   V++ 
Sbjct: 122 EKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 QLLNKIWG-PESNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYM 228


>gi|220913614|ref|YP_002488923.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860492|gb|ACL40834.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 232

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ DD   +           G +              SS   D+  ++  +    G  V
Sbjct: 4   ILIADDEPRIAAFIAKGLTAAGYTTSSVEDGIRALDYGSSGEFDLLILDIGMPRMDGFGV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R +     V ++   D            +                 R+        
Sbjct: 64  LSALRAMNCTVPVIVLTARDSLPDTLAALDGGADDYMSKPFRFEELLSRIRLRLRDAPAV 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     +G + +  D R   V+G    L  RE  +    + N GK +++ Q+ S ++G 
Sbjct: 124 PAAVAPASGDVSLDVDLRCANVRGRTVSLSAREFAMARVFVENSGKLLSREQLLSRVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+ ++  LR KL    G +   S R  GY  
Sbjct: 183 YDFDGSSNVVDVYVGYLRTKL----GPEHFQSVRGAGYRF 218


>gi|91786119|ref|YP_547071.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695344|gb|ABE42173.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 240

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +           G                 ++  D+  ++  L       L
Sbjct: 5   LLMIEDDSRLAAMVGEYLRQSGYGFTHAADGASGLAALQASPPDLVILDLML--PDMDGL 62

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------E 107
           E+ R I+      +   ++ ++        +   + G DD + KP   R           
Sbjct: 63  EVCRRIKSQGSESAHTAVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLR 122

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                          +     G + +  D R   + G +  L   +  +L  L    G+ 
Sbjct: 123 RGGEANGAGGAAAGGHKVMRFGSLEIDRDARTVSISGNLCELTSYQFDLLVALAERAGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++ QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 183 LSRDQIMEAVRGRELEAFD-RSIDVHMGRIRSAIEADPKDPKRILTVRGVGYVF 235


>gi|45441575|ref|NP_993114.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596756|ref|YP_070947.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis IP 32953]
 gi|145599096|ref|YP_001163172.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Pestoides F]
 gi|153948628|ref|YP_001400585.1| PhoP family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418657|ref|YP_001607237.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Angola]
 gi|186895824|ref|YP_001872936.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229894482|ref|ZP_04509664.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
 gi|14133539|gb|AAK54056.1|AF333124_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|14133543|gb|AAK54058.1|AF333125_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|45436436|gb|AAS61991.1| response regulator protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590038|emb|CAH21672.1| response regulator protein [Yersinia pseudotuberculosis IP 32953]
 gi|145210792|gb|ABP40199.1| response regulator protein [Yersinia pestis Pestoides F]
 gi|152960123|gb|ABS47584.1| transcriptional regulatory protein PhoP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351472|gb|ABX85420.1| transcriptional regulatory protein PhoP [Yersinia pestis Angola]
 gi|186698850|gb|ACC89479.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229703501|gb|EEO90518.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H +  P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 25  LVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIML--PDVDGLS 82

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           L  RI R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 83  LLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 142

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +    G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 143 ALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 203 WS-YDFGGQANVVELYISYLRRKI-DAGRAPMIHTRRGAGYLI 243


>gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581]
 gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator
           [Halomonas elongata DSM 2581]
          Length = 220

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ DG       +G +++   +                 ++  L       +E
Sbjct: 4   LLVEDDPLLGDGIRTALQREGYAVDWLETGRDGIAAIRHDDFSAVILDLGL--PDIDGME 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLKV 121
           +   IR    +P++ ++   ++++ +   D G DD V KP      +      + R    
Sbjct: 62  VLDKIRHAGSLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLRVIMRRAEGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+   E G + +         QG    L RRE  +L  L  + G+ + +  +   +YG  
Sbjct: 122 SSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPHLEDLLYGWE 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE V  N VE H+  LRKKL        + + R +GY +D
Sbjct: 182 DE-VASNAVEVHVHHLRKKLDRH----LIATVRGVGYRLD 216


>gi|270291051|ref|ZP_06197274.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304385329|ref|ZP_07367674.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270280447|gb|EFA26282.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304328536|gb|EFL95757.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 240

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D     F  +   +           +  +  +    +   L   G+  +
Sbjct: 3   ILMIEDNKSVSDMMGMFFKKEKWKVTFAYDGVKALEIFKADPQQWDIVLLDLNLPGKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           E+   +R  S+  PLI ++   S    +   + G D+ + KP             H R +
Sbjct: 63  EVAAELRRTSRTVPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALHRRVL 122

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + +  +   +     +          +          +  L  +E  +L+ L     +  
Sbjct: 123 MNKHNSNAEQQAGKFDVRTAHLKISTATREVYLDGKLISDLTPKEFDLLKTLAQKPMQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++  ++   +E  V++HI KLR+KL   +G   V +   +GY  D
Sbjct: 183 SREQLLQMVWD-YEYYGDERTVDAHIKKLRQKLEA-VGPQVVQTVWGVGYKFD 233


>gi|260577375|ref|ZP_05845345.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259020411|gb|EEW23737.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++         +G S+    +        +     +  ++  L       L
Sbjct: 7   ILVIDDEAPIRRFLRVPLEAEGHSVIEAANAREGILAVAREAPGLVILDLGL--PDADGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + R IR  SQVP++ +S        +   D+G  D V KP   +E+    R     R  
Sbjct: 65  SVLREIRGWSQVPVLVLSVRTDEAGKVAALDAGAQDYVVKPFGMKELLARIRSLLRGRAG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +          G    L RRE  +L  L ++ G+ V +  I  +++G
Sbjct: 125 STPPTVIEIADLHIDPGNHTVTKAGAALHLTRREFDLLWLLASHAGRLVTQGMILKSLWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                 +   +  ++ +LR+KL +       + ++  +GY  
Sbjct: 185 PAHAE-DSQYLRVYVRQLRQKLGDDAANPRYIITEPGIGYRF 225


>gi|229130510|ref|ZP_04259466.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228652849|gb|EEL08731.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
          Length = 219

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD + +++        +G  +             +    DV  ++  L        EL 
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGYELL 58

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIYRR 118
           R+ R     +P++ ++    +   L     G DD V KP ++     R            
Sbjct: 59  RLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKTE 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++   ++
Sbjct: 119 AAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G F+       V+  + +LRKKL      + + +   +GY +D
Sbjct: 179 G-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 218


>gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 219

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +     +         +   D+  ++  L        
Sbjct: 4   ILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGL--PDTDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119
           ++ R +R+    +P++ ++    ++ T+   + G DD V KP    E+LARV   +    
Sbjct: 62  DVLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVRLRMRNER 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R   V+G    L  RE  +LE LM + G+ + + Q+ S ++G
Sbjct: 122 PTELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSHVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+  +  LR+K+    G + + + R +GY +
Sbjct: 182 -YDYDPGSNVVDVFVRALRRKV----GAERIVTVRGMGYRL 217


>gi|182419726|ref|ZP_02950967.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665523|ref|ZP_04525511.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376463|gb|EDT74044.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658470|gb|EEP56022.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  L +     +  D G       + +           ++  +   ++       
Sbjct: 5   ILIAEDDNLFRSLVCDIITDQGYIPIEARNGQEAIDKF-FDLGNIDLVILDVMMPVYDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS +P+I ++     +  L  F+ G D+ + KP  +   +AR+  I +++K 
Sbjct: 64  EVLKEIREHSDIPIIMLTALGDEKHELLGFNKGADEYIGKPFSYEVFIARLNNIAKKIKH 123

Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  T   I +          G    L  +E  +L Y + N  K + + QI ++++G 
Sbjct: 124 DTEKEITYGKIIINQSNHKVISNGLEIKLNHKEYTLLIYFIKNSSKVLTREQILNSVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   +   +++HI  LR KL+ +     + + R  GY I+ 
Sbjct: 183 YDFDGDIRTIDTHIKTLRAKLKTEG--TYIKTVRGCGYMIEV 222


>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
          Length = 265

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  +    +             D+  ++  L       L
Sbjct: 38  LLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWML--PEMDGL 95

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTT----LDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            + + IR  S VP++ +S                D        + +  R           
Sbjct: 96  TVCQNIRWESDVPILMMSARKEEADKVEGLQGADDYIAKPFSLEELKARVASHLRRWRRY 155

Query: 118 RLKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +              +        +  +   L ++E  +++ L  N  +   K +++ 
Sbjct: 156 NKQEEVEEQTAYANGLIIDWQREIVSINQQEIALTQKEFALVKLLAKNPSQTFTKKELYQ 215

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            I+       + + V  HI  LR+KL + +     + +    GY  
Sbjct: 216 YIWQQATLE-DTHTVTVHIKALREKLNDSVRHPYFIQTVWGRGYRF 260


>gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 229

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R       +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWRRNHR--AMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALLRRSA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIML--PDFDGLE 77

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 78  VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 W-NYDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|302557885|ref|ZP_07310227.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302475503|gb|EFL38596.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 253

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        DG ++   +              D+  ++  L   G   LE
Sbjct: 26  LVAEDDEKQAELIRRYLVHDGYAVTVVHDGPTALDETVKRPPDLLVLDWML--PGLDGLE 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA   +P++ ++   +    L   D G DD + KP   RE++ARV  + RR +  
Sbjct: 84  ICRRIRATGDMPILMLTARSTEDDLLLGLDIGADDYMTKPFRPRELVARVRTLLRRTRQQ 143

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R E       P+ V  D  +  V G        E R+L  L+A   +   + Q+   I
Sbjct: 144 QERTEEVLLTAGPLTVAPDRHEVSVNGRPVNCTPSEFRLLSTLVAAPERVFTRAQLLHCI 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                 AV E  V+ H+  LRKK+ +     + + +   +GY +
Sbjct: 204 TD-HGRAVTERTVDMHMVNLRKKIESSPRRPELLLTVHGVGYKL 246


>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   +     +G  +              S   D+      ++  G    E
Sbjct: 5   LILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSV-PDIDIALLDVMVPGIDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDF------FDSGVDDVVNKPIHHREILARVAAIY 116
           + R IR  ++   I        +    +       D          +  R          
Sbjct: 64  VCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNV 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   +     +GP  +    +  +  G +  L   E  ++++ +      +++  +   
Sbjct: 124 YRESSAKVTFTSGPFTLDLISKQFKKNGRLIELTPTEFSLIQFFLEKENTPLSRDVLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++G  +   +  +V+ +I +LR+K+  N      + +    GY 
Sbjct: 184 VWGK-EYMGDPKIVDVNIRRLRQKIETNPSEPAFLQTVWGHGYK 226


>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 229

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGINGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|168208958|ref|ZP_02634583.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170712748|gb|EDT24930.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 234

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++   ++      +       ++ ++            
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIM--MPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|110799947|ref|YP_694916.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168216455|ref|ZP_02642080.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624595|ref|ZP_02952377.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674594|gb|ABG83581.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|177910199|gb|EDT72587.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381505|gb|EDT78984.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 234

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++   ++      +       ++ ++            
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIM--MPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|331001856|ref|ZP_08325377.1| hypothetical protein HMPREF0491_00239 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412179|gb|EGG91573.1| hypothetical protein HMPREF0491_00239 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 230

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +      E    L    + D+  ++           
Sbjct: 4   ILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLAR-KQPDLIILDIM--MPKADGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I +S   S    +   + G DD + KP   +E++A++ A  RR K 
Sbjct: 61  EVCNAIRDDVLCPIIFLSAGQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANLRREKR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQI 173
           S              G       E           L R E  I+E+L  + G+  ++ QI
Sbjct: 121 SQYINAEHKRNKLYFGELSINIKECTVKIGSNDLLLTRLEYNIVEFLALHAGQIFSREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           +  I+G +D   + + V  HI K+R K +      + + +   +GY  +
Sbjct: 181 YEKIWG-YDSDGDSSTVVEHIKKIRAKFIEGGSDTEYISTVWGIGYKWN 228


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD A + +     F  +G  +    +        +    D+  ++           
Sbjct: 4   LLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IRA S VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR   
Sbjct: 62  DTLKHIRAKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRATQ 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +      I +         R   V GE+  L   E  +LE L+   G+ + K ++   
Sbjct: 122 EKDDDPMTDIDMSGVLLRRKDRTVHVTGELVELTTSEYTLLECLLMVPGQVLTKQELSEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             G      +   ++ HIS LRKK+ N + G   + + R +GY  
Sbjct: 182 ALGRKLTMYD-RSLDMHISNLRKKIGNLESGEPRIKTVRGVGYIF 225


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIML--PDFDGLE 77

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 78  VMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 W-NYDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|256380367|ref|YP_003104027.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924670|gb|ACU40181.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +                  D+  ++  L   G   LE
Sbjct: 5   LLAEDDPAIAEPLSRALQREGYQVHVVGDGPGALEAAEHGGIDLLVLDLGL--PGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  + VP++ ++        +   D+G DD V KP    E++AR+ A+ RR   
Sbjct: 63  VCRRLRAGGRGVPVLMLTARSDEVDFVVGLDAGADDYVAKPFRLAELMARIRALLRRRAP 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E   +R+    R   V G+   L  +E  +L  L+   G+ V + +I S ++   
Sbjct: 123 ET--LEVNGVRMDLAARRVTVDGQEVQLANKEFELLRVLIQRAGQVVNRDEILSEVWNDP 180

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +       ++ H+S LR+KL + +     + + R +G+  +
Sbjct: 181 ELK-SSKTLDMHMSWLRRKLGDVRSVERRIATVRGVGFRFN 220


>gi|254689707|ref|ZP_05152961.1| Protein petR [Brucella abortus bv. 6 str. 870]
 gi|256257958|ref|ZP_05463494.1| Protein petR [Brucella abortus bv. 9 str. C68]
 gi|260755239|ref|ZP_05867587.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260884254|ref|ZP_05895868.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297248793|ref|ZP_06932511.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|260675347|gb|EEX62168.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260873782|gb|EEX80851.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297175962|gb|EFH35309.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
          Length = 241

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 12/223 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +    S             D+  ++      GE  + 
Sbjct: 23  LVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGVS 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR    
Sbjct: 81  LTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAPP 140

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P   F   R+ +   E   L  RE+ I+       G+ + + ++     
Sbjct: 141 AQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGETIPRHELT---- 196

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 197 -GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 238


>gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
 gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G ++    + +       +    ++ ++          +
Sbjct: 5   ILVVEDEQGIREAIGIYMKNQGYNVILAANGKEGLEKIETNDIHLAIVDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    R H   P++ +S        +   + G DD + KP    E++ARV +  RR + 
Sbjct: 63  SMVMEARKHHDFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRRYEQ 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +    G + + +  +   +      L  +E  IL+ L+++ G+  +  Q
Sbjct: 123 ILNLKNETKNEDEYMIGDLVLNNTTKRVTLNSRDIKLTPKEFDILKLLISHPGQVFSSQQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           I+  ++   +EA+    +  HI KLR+K+         +      GY ++
Sbjct: 183 IYELVW--KEEAINTETIMVHIRKLREKIEANPKKPIYIKVVWGQGYKME 230


>gi|209965187|ref|YP_002298102.1| transcriptional regulatory protein OmpR [Rhodospirillum centenum
           SW]
 gi|209958653|gb|ACI99289.1| transcriptional regulatory protein OmpR [Rhodospirillum centenum
           SW]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +                  D+  ++      GE  L
Sbjct: 8   ILVVDDDTRLREALKRYLSQHGFLVTTAADAAEARARLEGLCFDLIVLDVM--MPGENGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +L R +R    VP++ ++        +   ++G DD + KP   RE    +  +     +
Sbjct: 66  DLTRSLRRTGGVPILLLTARGQPDDRIAGLEAGADDYLPKPFEPRELLLRIQSILRRLAK 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G         +     E   L   E  +L+ L    G+  ++ ++   + 
Sbjct: 126 PAAAPAEIRLGRWVFDPQREELRAGEETVRLTPAEAGLLKTLATAPGEVFSREELVDRV- 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                      ++  +++LR+KL +       + + R  GY +
Sbjct: 185 ---GMECNARTIDVQVTRLRRKLEDDPRLPRYLQTVRGEGYVL 224


>gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 224

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDQTLNRQLVEALNGAGYVVDKAMDGEEGHFLGDTEPYDAVVLDVGLPL--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  R    +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  SVLERWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      + G    L   E R+L+YLM ++ + V++T++   +Y 
Sbjct: 121 GHASSEIHCGPLRLDTRAARVTLDGTALKLTSHEYRLLDYLMHHQDQIVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G + +++ R  GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL---GGAELIETVRGQGYRM 217


>gi|254974251|ref|ZP_05270723.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091648|ref|ZP_05321126.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313376|ref|ZP_05354959.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516063|ref|ZP_05383739.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649160|ref|ZP_05396062.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682337|ref|YP_003213622.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685936|ref|YP_003217069.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519270|ref|ZP_07405617.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208500|emb|CBA61123.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211952|emb|CBE02450.1| two-component response regulator [Clostridium difficile R20291]
          Length = 229

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +   ++          +  +   D+  ++  L        
Sbjct: 3   ILLVEDDKNIREMVYDFLISENYFVKTAVDGNTAIEIFKNYSFDIILLDLMLPKS--SGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ + IR+ S VP+I  +   S    +   + G DD + KP          +  + R   
Sbjct: 61  EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   +   + +          G    L   E  I++ L  N+G+  +K Q++
Sbjct: 121 YSSSRNSEDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQLY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           + I+        ENV+ +HI++LR KL + +   + + +   +GY ++ 
Sbjct: 181 NTIWKEP-YYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEE 228


>gi|289667204|ref|ZP_06488279.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 234

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 13  LVVEDEAAIADTVLYALRSEGYAPEHCLLGRDALARLRADPADVVVLDVGL--PDINGFE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R+ S+VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 71  VCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRNAG 130

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V +     G   +  DG        + PL R E  +L  L+   G  +++ Q+    +
Sbjct: 131 AVVESGWQPHGAFAIDRDGSRIRYGKTLLPLTRYEYALLAALLQRPGAILSRAQLMDRGW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               ++ +   V++HI  LR KLR      DP+ + R LGY+++
Sbjct: 191 DASADSAD-RTVDTHIKTLRGKLRLAGVPADPIRTHRGLGYALE 233


>gi|255655689|ref|ZP_05401098.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451695|ref|ZP_06893427.1| response regulator [Clostridium difficile NAP08]
 gi|296878939|ref|ZP_06902938.1| response regulator [Clostridium difficile NAP07]
 gi|296259458|gb|EFH06321.1| response regulator [Clostridium difficile NAP08]
 gi|296430052|gb|EFH15900.1| response regulator [Clostridium difficile NAP07]
          Length = 241

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 94/234 (40%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   +      +   +G+S +    + +    +  +   D+  ++  L     +  
Sbjct: 6   LIIDDEVEILKLLETVLKKEGLSNIYTAKTRKEGLEVFKNINPDLIILDIML--PDGEGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S  P+I +S        L     G DD V KP   +E+  RV A  RRL  
Sbjct: 64  DICKEIRKTSNSPIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLSY 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------------LPRRERRILEYLMANRGKR 167
            ++          ++ +       +                L  +E +IL     N+ + 
Sbjct: 124 FSDSQNENTDSDNNEEKTISFGPYILNESRAELIKDGKSIGLSAKELKILSLFANNQNQI 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++K +++  ++G  D    +N +  HI K+R+KL +     + + + + LGY +
Sbjct: 184 ISKEKLWDKVWGE-DYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +L+DD   + +        +G  +E  +          S    D+  ++  L       
Sbjct: 14  ILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNL--PDFSG 71

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR+     P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR 
Sbjct: 72  VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131

Query: 120 KVSNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +     A+               + ++ RD    G+   L  +E  +L +LM   GK + 
Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++I   ++G  D   ++N+++ +I  LR+K+ NK     + + R +G+ +
Sbjct: 192 RSEIMKGVWGE-DFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFIL 241


>gi|332671031|ref|YP_004454039.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340069|gb|AEE46652.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +      G +G  +    + +      S+A  D+  ++  L       L+
Sbjct: 5   LLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGASTA--DLVVLDLGL--PDMDGLD 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IR      P++ ++        +   D+G DD V KP    E    +  +      
Sbjct: 61  VARAIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +RV               L  +E  +L  L+A  G  VA+  +   ++
Sbjct: 121 DPGDEDELHAQNVRVDVAAHRAFQGDRELHLTAKEFDLLRVLVAAAGTVVARETLMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           G  D       ++ H+S LR+KL +       V + R +G+  +
Sbjct: 181 G-SDPTGSTKTLDMHVSWLRRKLGDDAGAPRYVTTVRGMGFRFE 223


>gi|329298872|ref|ZP_08256208.1| DNA-binding response regulator [Plautia stali symbiont]
          Length = 240

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +   A    +  ++           L    + D+  ++  L   G    
Sbjct: 6   ILIIEDDADATEVLEAYLLRENYAVRVAADGLCGLELAQRWQPDLILLDVML--PGLNGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +   S+VP+I ++        +     G DD V KP H  E++ARV A+ RR  V
Sbjct: 64  EVLAKLWRSSEVPVIMVTTMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSAV 123

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E    +                            E  +L  LM    + +++  +
Sbjct: 124 KMPAEEVLRSQGLEVNSGAMTVTVTQASGNVLCVDTMPTEFTLLVTLMRAPVRALSRQFL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 + D    E V+++H+  LRKKL        + + R +GY  
Sbjct: 184 LEQC--MPDSDALERVIDTHVYNLRKKLEAVGMAGVLLNVRGVGYRF 228


>gi|322374762|ref|ZP_08049276.1| DNA-binding response regulator [Streptococcus sp. C300]
 gi|321280262|gb|EFX57301.1| DNA-binding response regulator [Streptococcus sp. C300]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKLLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E G + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYGGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|293364938|ref|ZP_06611655.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703191|ref|ZP_07640137.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|331266859|ref|YP_004326489.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|291316388|gb|EFE56824.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623266|gb|EFO02257.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|326683531|emb|CBZ01149.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKLLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|227327463|ref|ZP_03831487.1| two-component system regulatory protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D         A    DG  +   +  +    +  +++ D+  ++  L        E
Sbjct: 7   LIIEDDMDAASVLEAYLRRDGYQVSIASDGQRGLHMALTSKPDLILLDVML--PKMNGSE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R  S +P+I ++        +     G DD V KP + +E++ARV A+ RR   +
Sbjct: 65  VLSALRQRSNIPVIMVTAIGDDPERIGALRYGADDYVVKPYNPQEVVARVQAVLRRTGYA 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQIF 174
                T      S                         E  IL  L+    +   + ++ 
Sbjct: 125 IREDATLTFENLSVDPTSVTASIAVSPSDSVVLDLTPTEFNILVTLLKAPNRAFTRGELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L +    E VV++H+  LRKKL      + + + R +GY  
Sbjct: 185 EAC--LPESEALERVVDTHVHNLRKKLNQYNIINVLVTVRSVGYRF 228


>gi|257791289|ref|YP_003181895.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490425|ref|ZP_07948908.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831281|ref|ZP_08164573.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1]
 gi|257475186|gb|ACV55506.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910469|gb|EFV32095.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486882|gb|EGC89329.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +      L   +G      +  +    L  S R D++ ++  L         
Sbjct: 4   LLVEDDAAIVASLTDLLRSEGYETRCADGQDAAVELLRSERFDLALVDVALAQ--GNGFA 61

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    +A    P +I ++      +T+   D G DD + KP   RE+L+R+ ++ RR   
Sbjct: 62  VCAAAKACDPAPAVIFLTASDDEFSTVAGLDMGADDYIAKPFRARELLSRIRSVLRRTNA 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++    G + + +        G    L   E R+L     +RGK V +  + +AI+   
Sbjct: 122 ASSLLRLGDVEIDAGTACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDSA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            E V +N +  ++ +LR K+ +       + + R LGY 
Sbjct: 182 GEYVSDNTLSVYVKRLRDKVEDDPAEPRLILTVRGLGYR 220


>gi|226323497|ref|ZP_03799015.1| hypothetical protein COPCOM_01272 [Coprococcus comes ATCC 27758]
 gi|225208181|gb|EEG90535.1| hypothetical protein COPCOM_01272 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV   +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVIICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           L  + V+EN +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYIWN 224


>gi|294055631|ref|YP_003549289.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614964|gb|ADE55119.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +++DD   V +        +G   E  N            + D+  ++  +    G ++
Sbjct: 9   ILVVDDEPDVTELLKYKLEQEGYQCEVLNDPLAFVGRARDYQPDLMILDIMMPELNGLQL 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R   A   VP++ ++     +  +   + G DD V+KP + +E++ RV  +  R  
Sbjct: 69  CRIARSDPAIKDVPIVFLTARGEAEDRIKGLEIGADDYVSKPFNTKELMLRVGKVLNRGT 128

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    R + G + +  +     V  E   L   E R+L+ LM  +G+  ++  +  
Sbjct: 129 QREAIAAPARIQIGGVVIDEELHQLTVDDEPVVLTATEFRLLKLLMERKGRVQSRENLLV 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++  +D  +E   V++H+ ++R+KL        +++ R +GY 
Sbjct: 189 NVW-HYDTDIETRTVDTHVRRVREKLGRYSH--LIETVRGVGYR 229


>gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
          Length = 221

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++  Y ++    G S+    + E       +   ++   +  +    G  +
Sbjct: 4   ILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYDL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 64  VGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   T        D          F LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSILTIGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEKTEDFQII-TVRGLGYK 219


>gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 232

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A    +G  +    + E   +L +    DV  ++  L G+G   L
Sbjct: 3   LLLVEDEREIADFLKARLEGEGFDVVAAVTGEEGFFLANEQVFDVVLLDLTLPGRG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R++R      P+I IS   S++  +   D+G DD + KP    E+LAR+  +  R  
Sbjct: 61  EVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPFAFPEVLARIRVVLRRGW 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G    L  RE  +LEYL+ + G+ V +  +   I+ 
Sbjct: 121 ADQVLLLRCGDLAMDLITRIVTRGGRTIALTAREFELLEYLLRHPGRVVTRDMLARDIWQ 180

Query: 180 LFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A   +NV++ HI+++RKKL +      + ++R +G+ +
Sbjct: 181 EDTRATNLDNVIDVHIARIRKKLDHGHERKLLHTQRGVGFQL 222


>gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG        G S++ F S +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSL--PERDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R   Q  P++ ++   +L   +     G DD + KP    E+ AR+ A I RR 
Sbjct: 61  DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +        + GE   L  RE  +LE  + N G+ + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE HI  LRKKL    G   + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHIHHLRKKL----GSQFIRTVHGVGYTL 216


>gi|254819560|ref|ZP_05224561.1| two component system response regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 266

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       D G   +        E +    R D+  ++  L   G     
Sbjct: 49  LVVEDSETIREMVSEALADVGYHTDARCDGGGLEAVLDGMRPDLVVLDVML--PGRDGFA 106

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR    
Sbjct: 107 LIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGRL 166

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +          G    L   E R+L + +  RG+ V+  QI + ++G   
Sbjct: 167 PQVVQVGDVALDLGAGVAARDGHRLDLTATELRVLTFFVEQRGRIVSAAQILNGVWGYDA 226

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+V+ H+S LR+KL    G   + + R +GY +
Sbjct: 227 Y--DPNLVQVHVSGLRRKLEAH-GPRILHTVRGIGYRL 261


>gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 236

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V       F   G  +                  D+  ++  L   G+  L
Sbjct: 4   LLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALEREVPDLIILDLML--PGDNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P+I ++    L   +   + G DD ++KP   RE+LARV A+ RR   
Sbjct: 62  TLCQRLRQQHATPVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVLRRAGE 121

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +   P  +                     + PL   E  +L   + +  + + + Q
Sbjct: 122 NRPVSADVPRPLIKFADWQLDLTRRELRSPDQVMIPLSAGEFDLLLVFVEHPQRILTREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   +A +   ++  +S+LR+KL  +      + + R  GY  
Sbjct: 182 LLDLARGQAHDAFD-RSIDVQVSRLRRKLEFDTKRPAMIRTVRNGGYLF 229


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 3   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +   +             DV  ++  L       +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLML--PELNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +  FD G DD + KP          R +L R+  
Sbjct: 62  EVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + K +        + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVM 226


>gi|311112536|ref|YP_003983758.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310944030|gb|ADP40324.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 279

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++      G   LE
Sbjct: 58  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIM--MPGFDGLE 115

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 116 LLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 175

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 176 AAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLRYLMENAKRVVSKSQILDNVW 235

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ +      + + R  GY I
Sbjct: 236 -NYDFGGQANIVELYISYLRKKI-DVGREPMIHTVRGAGYVI 275


>gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 257

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L    G  V
Sbjct: 13  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGLDV 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 73  LRRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 191 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 230


>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 236

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLH 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R   
Sbjct: 74  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYDGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|219854871|ref|YP_002471993.1| hypothetical protein CKR_1528 [Clostridium kluyveri NBRC 12016]
 gi|219568595|dbj|BAH06579.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 236

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  +   +         +S   D+  ++  L        
Sbjct: 9   ILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIML--PDGNGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + +R  SQVP+I ++        +   D G DD + KP   +E ++R+         
Sbjct: 67  DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       I + ++  +   +G    L  +E ++L   M N  + +++ +I   + 
Sbjct: 127 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 186

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               E  + N +  +I ++R+K+  +    + + +KR  GY  D
Sbjct: 187 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 230


>gi|209550328|ref|YP_002282245.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536084|gb|ACI56019.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        ++G  +         +   +    D+  ++      GE  +
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R +RA   VP+I ++        ++  ++G DD ++KP   R     I   +     
Sbjct: 72  DVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAG 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++ +   EV  L  RE+ I+       G  + + ++    
Sbjct: 132 GEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 189 --GNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRL 230


>gi|148379370|ref|YP_001253911.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931481|ref|YP_001383746.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935268|ref|YP_001387296.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288854|emb|CAL82938.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927525|gb|ABS33025.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931182|gb|ABS36681.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G         +         + ++  ++  L        
Sbjct: 5   IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNL--PKFDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
              R IR  S  P+I IS   S    +   +SG DD + KP ++       +  L RV  
Sbjct: 63  YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y          +   +  + +        +   L ++E  +L+ +M    K   + ++ 
Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQAHFNEKETMLSKKEGDLLDEMMKIYPKVATRQELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+      V+EN +  +I++LRKKL +    D +++ R  GY +
Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRL 227


>gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    L   +  +++     E       +   D+  ++  L       L
Sbjct: 3   LLLVEDERQLAEALSELLIKNRYAVDVVYDGEAGLDYALTGIYDLVILDIML--PRMNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ R +R +    P++ ++    L+  +   DSG DD + KP    E+    R  +  + 
Sbjct: 61  EILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRRKG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++  +     +     + E +     L R+E  I+ Y +    + ++K ++   ++
Sbjct: 121 EMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   + N +E +IS LRKKL +      + + R +GY ++ 
Sbjct: 181 G-FDSEADYNNIEVYISFLRKKLAHIGSQAAISTLRGIGYKLEV 223


>gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
 gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGL--PEIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +     +     P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 246

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +L+DD A + D        +G  +          +        D+  ++  L       
Sbjct: 11  ILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNL--PDFSG 68

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR+     P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR 
Sbjct: 69  IDICQRIRSSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 KVSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +     GP           + +  RD      +  L  +E  +L +LM  +GK + +
Sbjct: 129 ITFSAINGDGPQPETLKVGNLSMNTSTRDVSRGDRLIQLSVKEYELLNFLMRGQGKVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I   ++G  +   ++N+++ +I  LR+KL +K     + + R +G+ +
Sbjct: 189 ADIMRGVWGE-NFYGDDNLLDVYIRYLRQKLESKDLPTLIHTVRGVGFIL 237


>gi|330468445|ref|YP_004406188.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328811416|gb|AEB45588.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++   +    D+G    G  + E     Q  +  D   ++  L   G    E
Sbjct: 5   LVIEDDDRIRLALLLALEDEGYEAHGAATAEEGLRAQRRSPADYVLVDLML--PGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R +R    VP++ +S        +   ++G DD V KP+  +E+ AR+ A+ RR +  
Sbjct: 63  CIRQLRRDDDVPIVVVSARDDTHDIVAALEAGADDYVVKPVAIKELTARLRALRRRARTV 122

Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               E  P+ VF       +  +    G    + R E R+L  L  + G+ +++ Q+ S 
Sbjct: 123 TPVEEPVPVLVFGELEVSPEAGEVRRAGAPVAVTRTEFRLLCELAEHAGRVLSRQQLLSR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G    + +E +V+ H+ +LR+K+  +      + + R LGY +
Sbjct: 183 VWGYD--SGDERLVDVHVGRLRQKIEADPANPKHLVTLRGLGYKL 225


>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
 gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESIVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 252

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +   +    +      +      D+  ++          L
Sbjct: 20  ILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEHIDLVLLDVM--MPVMDGL 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P+I ++        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 78  EAMMHIRKTTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRRYTQ 137

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                +  + +   + G+       E  IL++LM +  +  +   I+
Sbjct: 138 FNQGYVETSHILKVGGLELNDETKSVSMDGKQVRCTPTEFDILKFLMEHPNRVFSPKHIY 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++        E  V  HI  LR+KL  N             GY I+
Sbjct: 198 EHVW-KDHSYGAEGTVAVHIRHLREKLEINPSEPRYFKVVWGQGYKIE 244


>gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 70/220 (31%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +   +             DV  ++  L       +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLML--PELNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +  FD G DD + KP          R +L R+  
Sbjct: 62  EVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + K S        + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVM 226


>gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
 gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
          Length = 245

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +        +   +    + E           D+  ++  L        
Sbjct: 4   ILIIEDERAVAELERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLML--PDMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P++ +S   S    +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRELRHRIDIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLNRYIR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V  E      +E  +L YL  +     +K ++F
Sbjct: 122 LTRKRIDVNEYIEYPGLKIDKSARRVFVNEEERFFTTKEFDLLTYLATHPNHVFSKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           SA++G+ D   E   V  HI K+RKK  N       +++    GY  
Sbjct: 182 SAVWGM-DSMGEIATVTVHIKKIRKKTENANVKSGYIETVWGSGYRF 227


>gi|148984065|ref|ZP_01817360.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148994896|ref|ZP_01823917.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|149021277|ref|ZP_01835523.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168483497|ref|ZP_02708449.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|168488654|ref|ZP_02712853.1| response regulator [Streptococcus pneumoniae SP195]
 gi|225857250|ref|YP_002738761.1| response regulator [Streptococcus pneumoniae P1031]
 gi|289167497|ref|YP_003445766.1| response regulator [Streptococcus mitis B6]
 gi|307702096|ref|ZP_07639103.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307705357|ref|ZP_07642219.1| response regulator [Streptococcus mitis SK597]
 gi|307707007|ref|ZP_07643804.1| response regulator [Streptococcus mitis SK321]
 gi|307707429|ref|ZP_07643911.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|322377389|ref|ZP_08051880.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|147923354|gb|EDK74467.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147926964|gb|EDK78009.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147930378|gb|EDK81362.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|172043120|gb|EDT51166.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|183572816|gb|EDT93344.1| response regulator [Streptococcus pneumoniae SP195]
 gi|225725623|gb|ACO21475.1| response regulator [Streptococcus pneumoniae P1031]
 gi|288907064|emb|CBJ21898.1| response regulator [Streptococcus mitis B6]
 gi|301800454|emb|CBW33088.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|307616381|gb|EFN95572.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307616583|gb|EFN95773.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307617533|gb|EFN96703.1| response regulator [Streptococcus mitis SK321]
 gi|307621144|gb|EFO00219.1| response regulator [Streptococcus mitis SK597]
 gi|321281589|gb|EFX58598.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|332072466|gb|EGI82949.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae]
          Length = 250

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 15/222 (6%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           + +        +G S +   +      L  +   D   ++  L       +E+ + +RA 
Sbjct: 29  ILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGMEVCKRLRAK 86

Query: 71  S-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARVAAIYRRL 119
             + P++ +S        +   + G DD + KP   R                       
Sbjct: 87  GVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSD 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++++    G ++V+ +  +     ++  L  +E  +L YLM +    + + ++   I+G
Sbjct: 147 NIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG 206

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 207 -YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 247


>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 247

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   + +         G  ++  N+ E       S    D+  ++          
Sbjct: 20  ILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVM--MPKMDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R+    P++ ++        +   + G DD + KP +HRE++AR+ AI RR  
Sbjct: 78  FDVLKKLRSSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHN 137

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I +    +  +V      L   E  IL  LM N  +RV K +I 
Sbjct: 138 LSSSGGAVEQDLFVNGILLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEIS 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I G   +A +   ++ H+S LRKK+      + + + R +GY +
Sbjct: 198 LKILGKPLQAFD-RSIDMHVSNLRKKIGAVAVDEKIKTIRGVGYML 242


>gi|330827712|ref|YP_004390664.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           veronii B565]
 gi|328802848|gb|AEB48047.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           veronii B565]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++         +G  +     +            D+  ++  L       +
Sbjct: 4   ILVIDDEAAIRRFLRISLIAEGHQVSEAVGVNEGLEQYRHLNPDLVILDLGL--PDGDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117
           ++ + IR H   P++ +S   S Q  +   D+G +D ++KP         I   +     
Sbjct: 62  QVLQAIREHHPNPVLVLSARDSEQEKVRLLDAGANDYMSKPFGIGEMMARIRVLLRQRAG 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +        ++ E  PL R+E  +L+ L+ + GK V +TQ+ + I
Sbjct: 122 VSSGERRHFPQCGLTLDISSHKVTMKEEEIPLSRKEFALLQALVCHPGKLVMQTQLLNDI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +G   +  + + +   I+ LRKKL +       ++++  +GY    N
Sbjct: 182 WGPSHKE-DTHYLRIVIASLRKKLGDNPQQPTLIETESGIGYRFIGN 227


>gi|312958810|ref|ZP_07773329.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286580|gb|EFQ65142.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   S      L    R ++  ++  L        
Sbjct: 3   ILVVEDEQKTADYVQQGLSESGYVVDCAPSGVDGLHLARQHRYELVILDVNL--PNTDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+   +R      ++ ++    L   +   D G DD + KP    E+LARV         
Sbjct: 61  EVLEQLRRDGDQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +               L  +E  +L  LM   G+ + +TQI S ++ 
Sbjct: 121 IPLPEVLRVADLELDPRRHRAYRGNRRIDLTTKEFALLHVLMRQTGEVMTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ ++     + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRAKVDDQSEVKLIHTIRGVGYVLE 221


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR      P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 218

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   + DG        G +++        +    S   D   ++  L    G +V
Sbjct: 3   ILLVEDDPELGDGLTVGLRQAGFAVDWLRDGNSADQALQSESFDFVVLDLGLPRLSGMEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R       +P++ ++   +    +   D+G DD + KPI   E+ AR+ A   R  
Sbjct: 63  LN--RARGRGQDMPILILTARDATGDKVSGLDAGADDYLVKPIDLDELTARIRALTRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +        + G+   L  RE  +L+ L+ + G+ + +TQ+  ++YG
Sbjct: 121 GRAAPLLTHGELSIDLAAHRVTLAGQEIELSSREFSLLQMLLESAGRVLTRTQLEQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + N +E HI  LRKKL    G + + + R +GY+I
Sbjct: 181 WHDE-PDSNALEVHIHHLRKKL----GSELIRTLRGVGYTI 216


>gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D +           + G  ++   +     +L +S R D   I+  L   G   L
Sbjct: 3   ILLIEDDSEAAAYMAKGLREAGHVIDHAATGTDGLFLATSERWDAMIIDRML--PGLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + +RA     P++ +S    +   +    +G DD + KP    E+       +    
Sbjct: 61  SIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R +   + +    R     G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 STQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+++ HIS+LR+K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFELPLIHTVRGAGYTL 221


>gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +R  ++   P+I ++    L   L  F SG DD + KP    E+ AR+ A+ RR 
Sbjct: 61  TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    RA          D  +   +G++  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFDKPLLHTVHGVGYRL 220


>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      L   +G  +           L      D+  ++          L 
Sbjct: 12  MVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVM--MPRLNGLS 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               +R   ++P+I +S        +     G DD V KP +  E++ARV A  RR +  
Sbjct: 70  ALMKLREKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 129

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                  R   V+GE   L   E +ILE LM + G+  +  QI+
Sbjct: 130 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++        EN V  HI  +R+K+  +      V     +GY ++ 
Sbjct: 190 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKMEK 238


>gi|307709571|ref|ZP_07646025.1| response regulator [Streptococcus mitis SK564]
 gi|307619702|gb|EFN98824.1| response regulator [Streptococcus mitis SK564]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLVEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   +     +  +      
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  +    S +       S   D+  ++          +
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKI-SKNPDIILLDIN--MPEIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR +   P++ ++        ++ F +G DD + KP    E+ ARV+A  RR + 
Sbjct: 62  EVCNRIRDYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N+ +        +  + R   +      L ++E  I+E L  N G+   K +I+  ++
Sbjct: 122 KSNQTKIKFYNGLTIDYEKRLICIDNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 182 G-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  +    S +       S   D+  ++          +
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKI-SKNPDIILLDIN--MPEIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+   IR +   P++ ++        ++ F +G DD + KP    E    ++      +R
Sbjct: 62  EVCNRIRDYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  + R   +      L ++E  I+E L  N G+   K +I+  ++
Sbjct: 122 KSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 182 G-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|168177880|ref|ZP_02612544.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|226947771|ref|YP_002802862.1| regulatory protein VanR [Clostridium botulinum A2 str. Kyoto]
 gi|182671355|gb|EDT83329.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|226842220|gb|ACO84886.1| regulatory protein VanR [Clostridium botulinum A2 str. Kyoto]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+          +G +++            +    D+  ++  L        
Sbjct: 4   ILVVEDDNLLNKTLSYNLKQEGYTVDCALIKRQAVEYINKKEYDLVILDINL--PDGDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   I+  H    +  ++        +  FD G DD + KP H      +V  ++ ++K
Sbjct: 62  DLCPKIKSKHKNTAVFFLTAKDMENDMIKGFDLGADDYITKPFHISVFKKKVKVLFNKIK 121

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +          +        + GE       E R L+ L+ N    + +  +   I+
Sbjct: 122 NKAHVDCYDDGKLYINFSNLKSTLNGEPIIFTPMEYRTLKILVKNPKIVLTRQMLLEKIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            + +  V+E+ + + IS++R K+  +     + +   +GY 
Sbjct: 182 DVDENFVDEHTLTTVISRIRNKIEAE-ETQYIKTVYGMGYM 221


>gi|162295952|gb|ABX83923.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLVNVRGVGYRLD 238


>gi|57234028|ref|YP_181944.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224476|gb|AAW39533.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +     +   ++G ++   ++ +    +  +   DV  ++  L        
Sbjct: 5   LLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIML--PELDGF 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR++    P+I ++        ++  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +     + + +  R     G    L  +E  ILEYL+ N+   + K  I   I+ 
Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  +  NV+E  IS++RKKL N      + + + LGY I+
Sbjct: 182 ESESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGYIIE 223


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANTITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|300853659|ref|YP_003778643.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433774|gb|ADK13541.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +   +  ++ G  S    E         +  ++  L   G    
Sbjct: 7   ILIVEDDTDINKLLCKILEKNNYNVRGAFSGTEAEMCIEKYDFQLVLLDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
           +L   IR    +P+I IS   + +T ++    G DD ++KP              R   I
Sbjct: 65  KLIEKIRKVKTMPVIVISAKTAQETKIEVLKLGADDFISKPFDVEEVLARVCAQLRRYMI 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       N      + +  +     ++ +   L  RE  ILE LM+   K   K  +F 
Sbjct: 125 FSNSNEKQNILTYKNMTLDRENHKVFIRSQEVLLTIREFCILELLMSYPKKVFTKANLFE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++       ++N +  H+S LR K+       + + +   +G+ +
Sbjct: 185 HVW-KDKFISDDNTINVHMSNLRSKIAKIDSNTEYIHTVWGIGFKM 229


>gi|294636784|ref|ZP_06715122.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
 gi|291089999|gb|EFE22560.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNNLLRHHLAVQMRELGHQVDAAENAKEADFFVREQTPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SLIRRWRSEQVTLPILVLTARESWQEKVTVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  +  P +V    R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFQVDLSRRELRVDDTLIKLTAFEYTIMETLIRNNGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+     + + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQQAFPAEVITTVRGQGYRFDV 222


>gi|167589275|ref|ZP_02381663.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 234

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDELKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G+ ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLEE 221


>gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 236

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         ++   +      +    +  + + D+  ++  L   G+   
Sbjct: 10  ILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTKPDLVLLDIML--PGKDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E+ + +RA    P++ ++        +   + G +D + KP+  R ++AR          
Sbjct: 68  EVCKEVRASYPNPILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLKNTAA 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + + +  R   V G    L   E  +   L  N G+ +++  +  A
Sbjct: 128 ADKSDVASTINIGGLSIDNTARSVHVNGVPLSLSSSEYNVFWVLANNAGEPISRENLIKA 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           I         +  ++  +S+LRKK+ +       + +    GY +
Sbjct: 188 IR-KIQYNGYDRSIDIVVSRLRKKIGDDSSAPTRIVTVWGKGYML 231


>gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395]
 gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
 gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae]
 gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
          Length = 240

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVV 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|315651479|ref|ZP_07904502.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
 gi|315486299|gb|EFU76658.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +      E    L    + D+  ++           
Sbjct: 4   ILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLAR-KQPDLIILDIM--MPKADGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I +S   S    +   + G DD + KP   +E++A++ A  RR K 
Sbjct: 61  EVCNAIRDDVLCPIIFLSARQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANLRREKR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQI 173
           S              G       E           L R E  I+E+L  + G+  ++ QI
Sbjct: 121 SQYINAEHKRNKLYFGELSINIKECTVKIGSNDLLLTRLEYNIVEFLALHAGQIFSREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           +  I+G +D   + + V  HI K+R K +      + + +   +GY  +
Sbjct: 181 YEKIWG-YDSDGDSSTVVEHIKKIRAKFIEGGSDTEYISTVWGIGYKWN 228


>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 234

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +    L   +G  +    + +      +    D+  ++  +  K     
Sbjct: 9   ILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVDR-TDDSIDLIILDVMMPQK--SGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  ++VP++ ++        +  F  G DD ++KP  + E+++RV ++ RR  V
Sbjct: 66  KACSEIREKTRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRRYYV 125

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A                 D ++ E+ GE+  L   E RILE +M NR K  +   I
Sbjct: 126 YQGSAPAEKSNKLVIRDLVLDKDAQNVEIGGEIVTLTDIEYRILELMMDNRKKVFSAQNI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +I+         N V  HI  LRKKL++       + +    GY +D
Sbjct: 186 YESIWNEPYFYSANNTVMVHIRNLRKKLKDNSQEPQYIKTAWGKGYYVD 234


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G         +       S   DV  ++  L  +    L
Sbjct: 5   ILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHR--DGL 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R + +  +  P+I ++        +   + G DD V KP   RE++AR+  I RR  
Sbjct: 63  EICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRRRN 122

Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +      PI +  +  +  ++G+   L R+E  +L  L+ N+G+ + +  +   
Sbjct: 123 LDLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNKGRVLKRDYLLQR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           ++   D  V+  V++ H+SKLR+KL +       +++ R +GY  + 
Sbjct: 183 LWDYGDT-VKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFEE 228


>gi|262373013|ref|ZP_06066292.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313038|gb|EEY94123.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G + E  +S              +  ++  L        
Sbjct: 3   ILIIEDETKIASYLVKGLIESGYTAECVHSGLEGLERLKMKSYSLVILDVML--PDLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +I+R  S+VP+I ++    +   +   + G DD + KP  + E+LARV ++ RR + 
Sbjct: 61  DVLKILRQFSKVPVIFLTAKDQILDRVKGLELGADDYLAKPFSYIELLARVKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     +    ++         +  +  L ++E  +L +++ ++ + + + QI S ++ +
Sbjct: 121 NQENEFSIASLKMDLTQHKVWREDTLIDLSKKEFNLLRFMLLHQNEIITRRQIASEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+ +      + + R LGY +
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDDGHDLKLIHTIRGLGYKL 219


>gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
 gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
          Length = 232

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +         +    +  ++  L        
Sbjct: 3   ILVVEDEIKAGDYLKQGLSEAGFMVDIARNGVDGLHFALTEDYQLIILDVML--PKLDGW 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +++ +A  + P++ ++    ++  +  F+ G DD + KP    E+LARV  + RR+ 
Sbjct: 61  QVLQMLRQAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLLRRIP 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +T  +++         R     G    L  +E  +LE L+  +G+ + +  I S
Sbjct: 121 NEEKKIQTTSLKIADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPRMLIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 181 HVWDM-NFDSDTNVIDVAIRRLRNKIDDSYTPKLIHTVRGVGYVLD 225


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD V KP    E       +L RV  
Sbjct: 62  EVCRRLRQSKSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDF 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDNGTTKQTTVTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++  +E NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 KKVWG-YESQIETNVVDVYIRYLRNKIDRPGEDSYIQTVRGTGYVM 226


>gi|229821647|ref|YP_002883173.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567560|gb|ACQ81411.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 218

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G       +      L S+   D+  ++  L       L
Sbjct: 4   ILIAEDSERISAFVAKGLRAAGFVPTVVPTAREAFDLASTGDFDLLVLDLGL--PDGDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
            + R +RA      ++ ++   S+  T+   + G DD + KP    E+LARV    R  +
Sbjct: 62  SVLRRLRAQGNPIAVVILTARDSVTDTVAGLEGGADDYMAKPFRFEELLARVRLRLRGAV 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R   V G    L  RE  + E  + + G+ +++ Q+ S ++G
Sbjct: 122 ADEPTVLRHGELELDLRSRRARVDGREVDLSAREFALAETFLRHPGQVLSREQLLSRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D     NVV+ ++  LR+KL    G D V + R +GY +D
Sbjct: 182 -YDFDPGSNVVDVYVRYLRRKL----GADLVTTVRGMGYRLD 218


>gi|219856344|ref|YP_002473466.1| hypothetical protein CKR_3001 [Clostridium kluyveri NBRC 12016]
 gi|219570068|dbj|BAH08052.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G       D        ++   E        D+  ++  L        
Sbjct: 7   ILVVEDDIMLNSGLCYNLQLDNYEAIPAYNMPSAEENIRDMDFDLIVLDINL--PEGSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  + I++   VP+I ++     +  +  F+ G +D + KP +      +V AI RR   
Sbjct: 65  DFCKKIKSRRDVPVIFLTACDMEEDVMKGFELGAEDYITKPFNINIFRKKVGAILRRCDK 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N    G   V  +     ++GE   L   E ++L+    N  K + +  +   ++ 
Sbjct: 125 QWGENIYTQGSFIVDFNRFTATLEGEQITLTPTEYKMLKIFTENPNKVLTRQALLEKLWD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                V+E+ +  +I++LR K+ ++     + +   +GY 
Sbjct: 185 CHGNFVDEHALTVNINRLRGKIESE-NRKYIKTVYGMGYM 223


>gi|169836123|ref|ZP_02869311.1| two-component response regulator [candidate division TM7
           single-cell isolate TM7a]
          Length = 520

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +  +++  D G  +     +++           D + ++  L       
Sbjct: 11  ILIVDDEQEILNMVVSILADGGYKNTRTARNVKEALKCAKEVEPDFAILDVML--PDGNG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119
            EL   +R +S  P++ ++     +     F  G DD + KP      +    A + R  
Sbjct: 69  FELLEKLRKNSDYPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTY 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  N        ++     +    GE   L  +E  +L+ L  N G+ V    +  AI+G
Sbjct: 129 KEENFIVNLNGCQIDFSRGEIVKDGEKISLTAKEYELLKTLYRNAGRIVTIDSLCEAIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +  V  N + +HI ++R+K+         + + + LGY +
Sbjct: 189 E-NAYVYSNSLMTHIRRIREKIEKEPSHPVSLITMKGLGYKL 229


>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
 gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
          Length = 240

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|118444074|ref|YP_877404.1| two-component response regulator [Clostridium novyi NT]
 gi|118134530|gb|ABK61574.1| two-component response regulator [Clostridium novyi NT]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +    +      + S     +  ++A L        
Sbjct: 3   ILVVDDEISILQLIEMTLELENYEVMTAKTGLDALNILSKENIQLIILDAML--PDINGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+  S +P+I ++    +   +     G DD + KP +  E++ R+    +R+K 
Sbjct: 61  NLIPKIKNISDIPIIMLTAKNDINDKILGLQLGADDYITKPFNSTELILRIKIASKRVKK 120

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   I    R+    R   +      L  +E  +L YL  N+ K  ++ ++ S +
Sbjct: 121 DIVNEKNEIILGSLRILKKERKLIINSTEVTLTYKEFEVLSYLCENKEKVFSREELLSKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D       V+  I +LRKKL      + + +    GY I+ +
Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLGK--CQNYIKTLYKAGYKIEVD 223


>gi|29375629|ref|NP_814783.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227517974|ref|ZP_03948023.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555159|ref|ZP_03985206.1| response regulator [Enterococcus faecalis HH22]
 gi|229546898|ref|ZP_04435623.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229548990|ref|ZP_04437715.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971502|ref|ZP_05422088.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974117|ref|ZP_05424703.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256617972|ref|ZP_05474818.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256761808|ref|ZP_05502388.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957140|ref|ZP_05561311.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256960233|ref|ZP_05564404.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256962524|ref|ZP_05566695.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077936|ref|ZP_05572297.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257081302|ref|ZP_05575663.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083959|ref|ZP_05578320.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086407|ref|ZP_05580768.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089457|ref|ZP_05583818.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415667|ref|ZP_05592661.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257421297|ref|ZP_05598287.1| two component system response regulator [Enterococcus faecalis X98]
 gi|293382595|ref|ZP_06628528.1| DNA-binding response regulator CsrR [Enterococcus faecalis R712]
 gi|293387823|ref|ZP_06632365.1| DNA-binding response regulator CsrR [Enterococcus faecalis S613]
 gi|294779303|ref|ZP_06744707.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859890|ref|ZP_07105978.1| response regulator ArlR [Enterococcus faecalis TUSoD Ef11]
 gi|307269675|ref|ZP_07551008.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272069|ref|ZP_07553334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275532|ref|ZP_07556674.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278905|ref|ZP_07559965.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307286908|ref|ZP_07566988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307289987|ref|ZP_07569912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900988|ref|ZP_07760281.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312904612|ref|ZP_07763770.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312906799|ref|ZP_07765796.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312952678|ref|ZP_07771540.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|312978946|ref|ZP_07790672.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|29343090|gb|AAO80853.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933598|gb|AAS49393.1| response regulator [Enterococcus faecalis]
 gi|227074592|gb|EEI12555.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175707|gb|EEI56679.1| response regulator [Enterococcus faecalis HH22]
 gi|229306011|gb|EEN72007.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308063|gb|EEN74050.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962520|gb|EET94996.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255966989|gb|EET97611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256597499|gb|EEU16675.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683059|gb|EEU22754.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947636|gb|EEU64268.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256950729|gb|EEU67361.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256953020|gb|EEU69652.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985966|gb|EEU73268.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256989332|gb|EEU76634.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991989|gb|EEU79291.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994437|gb|EEU81739.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998269|gb|EEU84789.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157495|gb|EEU87455.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257163121|gb|EEU93081.1| two component system response regulator [Enterococcus faecalis X98]
 gi|291080038|gb|EFE17402.1| DNA-binding response regulator CsrR [Enterococcus faecalis R712]
 gi|291082798|gb|EFE19761.1| DNA-binding response regulator CsrR [Enterococcus faecalis S613]
 gi|294453670|gb|EFG22068.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295114600|emb|CBL33237.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850708|gb|EFK78457.1| response regulator ArlR [Enterococcus faecalis TUSoD Ef11]
 gi|306498945|gb|EFM68438.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306502033|gb|EFM71320.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504387|gb|EFM73597.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306507920|gb|EFM77048.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306511289|gb|EFM80294.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514003|gb|EFM82594.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310627053|gb|EFQ10336.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629194|gb|EFQ12477.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632125|gb|EFQ15408.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311288383|gb|EFQ66939.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311291889|gb|EFQ70445.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027027|gb|EFT38959.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029740|gb|EFT41672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031750|gb|EFT43682.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315034176|gb|EFT46108.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315144686|gb|EFT88702.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147999|gb|EFT92015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315149571|gb|EFT93587.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315153125|gb|EFT97141.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315156898|gb|EFU00915.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315157685|gb|EFU01702.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315160657|gb|EFU04674.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165086|gb|EFU09103.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315168068|gb|EFU12085.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171987|gb|EFU16004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315574289|gb|EFU86480.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315577417|gb|EFU89608.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315581638|gb|EFU93829.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480292|gb|ADX79731.1| response regulator [Enterococcus faecalis 62]
 gi|327534636|gb|AEA93470.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 9   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|23010703|ref|ZP_00051302.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 240

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   +         + + + AR D+  ++  L   GE  L
Sbjct: 10  ILVVEDDREISALVARYLRANDCRVSLAGDGREMDRVLADARVDLIVLDLML--PGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 68  SLCRRLRAGSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRKGS 127

Query: 122 SNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E      F          +    +G    +   E  +L  L    G+ +++ Q+ 
Sbjct: 128 EPQDGEGTRRFHFMGWTLDVGLRQVLSPEGARISITGAEFDLLHALCLRPGRVLSRDQLL 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               G      E   ++  +S++R+K+  +    + + + R  GY  
Sbjct: 188 DLTQGRAAGPFE-RSIDVLVSRIRQKIERDPRNPEIIRTIRSGGYLF 233


>gi|332701528|ref|ZP_08421616.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551677|gb|EGJ48721.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 255

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +  +     + +     ++ +    L  S R D+  ++  L       L
Sbjct: 4   ILIIDDDIALGELLVEYLSREALEATIASTGKEGLELALSGRFDLVLLDLIL--PDVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  ++R     P+  +S      + +   + G DD + KP   RE++AR+ AI RR   
Sbjct: 62  TMLYMLRKQDGPPVFILSGRGDDVSRIVGLEMGADDFLPKPFEPRELVARMRAILRRTSK 121

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A +             R      E   L + E  +LE L+ + G+ V+K  +  A 
Sbjct: 122 AKCSAYSELQVGDLRLEPRLRQAWRGEERLTLTQNEFNLLETLLRSAGQVVSKEDLSLAA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            G  + +  +  V+ HIS LR+KL       + + + R +GY 
Sbjct: 182 LGR-ELSPLDRSVDVHISNLRRKLGPQPDESERIRTVRGVGYM 223


>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGL--PQMDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   +P++ ++        +   D+G DD V KP H  E+LARV A I R  
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+++ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GVDLIETIRGLGYRM 216


>gi|300853303|ref|YP_003778287.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433418|gb|ADK13185.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    +   S +   ++       +
Sbjct: 5   LIIDDDKELCVLMKKCVEQENLSAIIAHGGVEGLRLADENKNSCSLVILDVMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  S +P++ ++        +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLKKIRETSNMPVLMLTAKSDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTTL 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + +    R   V      L  +E  +L +L +N+G+   K QI+ 
Sbjct: 125 NPTFITDTDYIMLKGMVIDKANRMVSVNDIPVELTSKEFDLLSFLASNKGRVFTKKQIYM 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++   + A ++N + S ISKLRKK+         + + R +GY  + 
Sbjct: 185 QVW-EEEYAYDDNNIMSFISKLRKKIEPDPEHLFYILTVRGVGYRFNK 231


>gi|260426786|ref|ZP_05780765.1| two component transcriptional regulator, winged helix family
           [Citreicella sp. SE45]
 gi|260421278|gb|EEX14529.1| two component transcriptional regulator, winged helix family
           [Citreicella sp. SE45]
          Length = 232

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++      G  G         E      + AR D+  ++       E  L
Sbjct: 5   ILICDDEPDLREMLAEYLGKRGYRTTLAAGAEELRAHLAEARPDLILLDIN--MPDEDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--------VNKPIHHREILARVA 113
            + R ++      +I ++    +   +   + G DD                  +  + +
Sbjct: 63  SVLRSLQGPEAPMVIMLTAAGDVIDRVVGLEMGADDYLAKPVDLRELVSRIKAVLRRQTS 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +                 +  +  GE  PL   E  +L+    NRG+ + + QI
Sbjct: 123 VATEAPRERARFRFGKTWLDLDAAKLFDEGGEELPLTAMEFNLLKLFARNRGRVLNRDQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               +        +  ++  IS++RKK+  N    + + + R +GY  D
Sbjct: 183 LEGAHDRS-WDPFDRSIDIRISRIRKKIEVNPAKPEVIRTVRGVGYIYD 230


>gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB056]
 gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB059]
 gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIEGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+  +     + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEEYEPKLIHTIRGLGYKI 219


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    +E  +  E           D+  ++  L       +
Sbjct: 3   ILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVML--PKLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA+    P++ ++   ++Q  +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  ALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     T     V  +  +   Q +   L  +E R+LE+ + +  +  +++Q+   ++ 
Sbjct: 121 TALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQLLDHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             D+  EE  V++HIS LR+KL+      D +++   LGY +
Sbjct: 180 AMDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221


>gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D   +  G +G  ++        +WL +    DV  ++  L   G    +
Sbjct: 4   LLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIML--PGRNGYD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +   +R      P++ ++        +D FD G DD + KP     ++AR+ A   R   
Sbjct: 62  VLAGLRRDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +               L  +E  +L YL    G+  +K +I   ++G 
Sbjct: 122 ERPTVLDVGGLTIDPARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D    +NVVE ++  LR+K+    G   +++ R  GY +
Sbjct: 182 -DFEGNDNVVEVYVGYLRRKIDAPFGTASLETVRGHGYRL 220


>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 9/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        DG  +      E         R     ++  L   G    E
Sbjct: 11  LVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIAL--PGLAGTE 68

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 69  ICRRLRAAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRTAG 128

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R     G    L   E  +L +LMA  G+   + ++ + ++G
Sbjct: 129 VPAEQPRTLGAVTLDPARRTVTAGGTPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               A     V+ H++++R KL        + + R +GY
Sbjct: 189 YAAHAG-TRTVDVHVAQVRAKLGPDS---VIRTHRGVGY 223


>gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri
           93-146]
 gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri
           93-146]
          Length = 220

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +  + +  +S      L  S+   +  ++  L        
Sbjct: 3   ILIVEDDTLIQQGLAQAMARENYAYDCADSAVGASALLQSSHYSLIILDLGL--PDIDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  R      P++ ++   ++   +D  D+G DD + KP    E+LARV A+ RR++
Sbjct: 61  NALRQWRREGIDAPVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   +   I +    +     G+   +  +E  IL  LM   G+ + +  +   +Y 
Sbjct: 121 GLCNNFLQVDDIHLDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D  +  N +E HI  LR+KL    G   + + R +GY ++ 
Sbjct: 181 WQD-GLSSNSLEVHIHNLRRKL----GKKRIKTLRGVGYRLEK 218


>gi|228954723|ref|ZP_04116745.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071949|ref|ZP_04205159.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229081705|ref|ZP_04214198.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228701550|gb|EEL54043.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228711108|gb|EEL63073.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228804921|gb|EEM51518.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 248

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 17  ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 75  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 134

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 135 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 195 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALFTEW 242


>gi|308235379|ref|ZP_07666116.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114873|ref|YP_003986094.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946367|gb|ADP39071.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      +          + + D+  ++  L       +
Sbjct: 14  ILVVEDEPDLATAIAQRIVARGWKARVVSDGVSAVKAALTLKPDLIIMDVML--PVMDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
           E  R I +   +P++ ++   +    L    +G DD V KP   RE++AR AAI      
Sbjct: 72  EATRRIVSRYPIPVLMLTARDAESDKLAGLSAGADDYVTKPFSPRELIARCAAILRRVER 131

Query: 116 ---YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N   + G + +    R   + G+       E  +L     +    + +  
Sbjct: 132 ATLIANRAQYNALFKFGDLIIDPRQRLVTLNGKEIHFTPTEFSLLTTFAKHPHDVLKRET 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SH+  LR K+    G   + +   +GY+ +
Sbjct: 192 LLEEVWDWPDASG-TRTVDSHVKSLRHKI----GSSWIRTIHGIGYAFE 235


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      D+  ++  L        
Sbjct: 13  IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVML--PDIDGF 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR +   VP++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 71  TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 131 DPDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN----------KLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+            K     +++KR +GY I
Sbjct: 191 W-QYDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 242


>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
 gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
          Length = 311

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D    L   +G ++    + +    L S+    V      +        
Sbjct: 87  ILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVLASAE---VDLYLLDVNMPELSGF 143

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
                IR     P+I ++ Y      +  F +G DD + KP  + E+L RV AI RR   
Sbjct: 144 MAGSEIRKQFNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRRSAR 203

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G + +  + +    QGEV  L   E +ILE L+ ++ K  +   I
Sbjct: 204 GTAPAQEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKIYSLENI 263

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +I+   ++AV ++ +  HI  +RKKL +       + +    GY +D
Sbjct: 264 YQSIW--EEDAVGDSAIMVHIKNIRKKLEDDSRNPRYIKTAWGRGYYVD 310


>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
 gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  +    S +       S   D+  ++          +
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKI-SKNPDIILLDIN--MPEIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+   IR +   P++ ++        ++ F +G DD + KP    E    ++      +R
Sbjct: 62  EVCNRIRDYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  + R   +      L ++E  I+E L  N G+   K +I+  ++
Sbjct: 122 KSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 182 G-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|28209933|ref|NP_780877.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202368|gb|AAO34814.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 238

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 82/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +    G  +    S    +         +  ++  +        
Sbjct: 12  ILVVEDDTDINNLLCTMLNKQGYKVTSAYSGSEAKMCLEKQDFQLILLDLMIPA--ISGE 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
            L   IR    +P+I IS  P     +     G DD + KP    E+        R   +
Sbjct: 70  NLISEIRKFKTMPIIVISAKPGQDIKIKVLKLGADDFICKPFDTNEVLARVESQLRRYTV 129

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       N      + +  +  +  V+GE   L  RE  ILE LM+N+ K   K  +F 
Sbjct: 130 FSSKNKEKNILTYKDLSLNKETLEVAVKGEYISLTAREFTILELLMSNQKKVFTKANLFE 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   D   + N V  HIS +R KL       + + +   +GY I+
Sbjct: 190 HAWNE-DFFCDHNTVNVHISNIRSKLAKINPDIEYIHTVWGIGYKIN 235


>gi|88860480|ref|ZP_01135118.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
 gi|88817678|gb|EAR27495.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++         +G ++    +         S + D+  ++  L   G+   
Sbjct: 4   ILLVEDDLVLQQLTKEYLIHNGFTVSVLGNGSEVLSSVQSLQPDLMILDVML--PGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD V KP+  R ++AR+ AI RR K 
Sbjct: 62  SVCREVRDKHSLPILMLTAKGEDFDQVVGLEFGADDYVVKPVEPRVLVARINAILRRHKP 121

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E   G +++    R   +  E   L   E  +L  L +N G+ + +  +   + G
Sbjct: 122 HRQHEELVFGQLKIDKTSRLVFLNQEEITLTSHEFELLWLLASNAGEVLNRDYVHQQMIG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +    +  V+  IS+LRKKL +       + +    GY  
Sbjct: 182 R-EYDGLDRTVDVRISRLRKKLLDNTDKPYRIKTVWGQGYLF 222


>gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076450|gb|ADJ65849.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 240

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++                    +    +  S R D+  ++      GE  LE
Sbjct: 8   LIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLM--MPGEDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R     PL+ ++   +L   +   + G DD + KP   RE+LAR+  I RR +  
Sbjct: 66  LCRELRKKRNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRARSF 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQI 173
             + E   +                 +            + ++L  L+ +  + +++  +
Sbjct: 126 PEKLEADRVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRALSRDFL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + +YG  +    +  ++  IS+LR++L +       + + R  GY +
Sbjct: 186 LNTVYGK-EAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYML 232


>gi|260554988|ref|ZP_05827209.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411530|gb|EEX04827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 247

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|229552527|ref|ZP_04441252.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314079|gb|EEN80052.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 237

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +         +   D   ++  L       L
Sbjct: 13  ILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLML--PELNGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ +
Sbjct: 71  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 130

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                      +           R      ++  L +RE  +L  LM N    +A+  + 
Sbjct: 131 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G ++  VE NVV+ ++  +R K+        + + R  GY +
Sbjct: 191 SKVWG-YNSDVETNVVDVYVRYIRNKIDRPGEPSYIQTVRGTGYVM 235


>gi|209885691|ref|YP_002289548.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
 gi|209873887|gb|ACI93683.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
          Length = 226

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D     +     F + G   E     E    L  S   DV  ++  L    G  V
Sbjct: 3   LLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKRDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R        P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 63  IGTLRE--TGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         +  D    +V+     +    RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 GPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKGQEVPLLHTIRGAGYMI 221


>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 220

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G +++     E   +L S+   D   ++  L       L 
Sbjct: 4   LIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGL--PEVDGLT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R  R     P++ ++   S    +   D+G DD + KP    E++AR+ A I R   
Sbjct: 62  VLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY  
Sbjct: 122 NASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYSLD 217


>gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLRLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|332531423|ref|ZP_08407327.1| winged helix family two component transcriptional regulator
           [Hylemonella gracilis ATCC 19624]
 gi|332039092|gb|EGI75514.1| winged helix family two component transcriptional regulator
           [Hylemonella gracilis ATCC 19624]
          Length = 242

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G  +   +         +    D+  ++  L   GE  L 
Sbjct: 8   LLVDDDESITGLLSDYLAGFGFEVRIASDGSAMRAALAQDEADLVVLDVML--PGEDGLV 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R      P+I ++        +   + G DD + KP   RE++AR+  + RR   
Sbjct: 66  LSRELRRQYARLPIIMLTARAEAYDRVIGLEMGADDYLCKPFEPRELVARIRTVLRRASR 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       F        +         V PL   E R+L   +    +   + Q+ 
Sbjct: 126 PTGEPPLIGRVCFDGWELRLQERNLLSPRGVVVPLSNAEFRLLSTFLRMPRRVCTRDQLM 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
               G   ++ E   ++  +S+LR+KL  +      + + R  GY  + N
Sbjct: 186 EQARGRAMDSFE-RSIDLLVSRLRQKLAEDTEAPSLIKTVRGAGYLFNVN 234


>gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 218

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G      +          S   D+  ++  L        
Sbjct: 4   ILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGL--PTIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S +P+I ++   S + T+D  D+G +D + KP    E+LARV +  R   
Sbjct: 62  EVLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPV 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N  + +         GR   + G    L  RE  + E  + + G+ +++ Q+ S ++G
Sbjct: 122 TANTISISHGDVTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D     NVV+ ++  LR K         + + R  GY  +
Sbjct: 182 M-DFDPGSNVVDVYVRYLRGKFGAA----RIATVRGAGYRWE 218


>gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 231

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+ +           L    +  +  ++          ++
Sbjct: 5   LVVDDEKEIRDAIDIYLRGEGMKVFKAKDGVEALELLDKEKIHLIVLDIM--MPRMDGIK 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR +  
Sbjct: 63  TCLKIREKRNLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRRYQKP 122

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  E   + + +  +   ++GE   +   E +IL+ L +N G+  +  +I+ 
Sbjct: 123 LELEGESPDIIEVRDLIINNKEKTIFLRGEDVKVTATEFKILQLLASNLGRVFSIKEIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++        EN V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 KVWEEP-FYRSENTVTVHIRRIREKIEINTKDPEYIKVVWGVGYKIE 228


>gi|254975306|ref|ZP_05271778.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092696|ref|ZP_05322174.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314435|ref|ZP_05356018.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517111|ref|ZP_05384787.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650217|ref|ZP_05397119.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683335|ref|YP_003214620.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686931|ref|YP_003218064.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209498|emb|CBA63052.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212947|emb|CBE04223.1| two-component response regulator [Clostridium difficile R20291]
          Length = 241

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 94/234 (40%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   +      +   +G++ +    + +    L  S   D+  ++  L     +  
Sbjct: 6   LIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIML--PDGEGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S  P+I +S        L     G DD V KP   +E+  RV A  RRL  
Sbjct: 64  DICKEIRKTSNSPIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLSY 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------------LPRRERRILEYLMANRGKR 167
            ++          ++ +       +                L  +E +IL     N+ + 
Sbjct: 124 FSDVQNESKNLNKNEEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQI 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++K +++  ++G  D    +N +  HI K+R+KL +     + + + + LGY +
Sbjct: 184 ISKEKLWDKVWGE-DYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236


>gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        ++G  +         +   +    D+  ++      GE  +
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E+ R +RA   VP+I ++        ++  ++G DD ++KP   R     I   +     
Sbjct: 72  EVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAG 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++ +   EV  L  RE+ I+       G  + + ++    
Sbjct: 132 GEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 189 --GNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRL 230


>gi|296449998|ref|ZP_06891762.1| response regulator [Clostridium difficile NAP08]
 gi|296878379|ref|ZP_06902387.1| response regulator [Clostridium difficile NAP07]
 gi|296261268|gb|EFH08099.1| response regulator [Clostridium difficile NAP08]
 gi|296430677|gb|EFH16516.1| response regulator [Clostridium difficile NAP07]
          Length = 266

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++    +      +  +    ++ I+          +
Sbjct: 32  ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIIDIM--MPKMDGI 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 90  TLTMKLRENHNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 149

Query: 122 SNNRAETGPIRVFS--------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N  E    +V                + ++  V G+       E +IL  LM N G+ 
Sbjct: 150 YLNMVENKEQKVDDDDGVFAIGGLELNENTKEVSVDGKHIKATPIEFKILSLLMRNAGRV 209

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  +I+  ++   D AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 210 FSADEIYERVWN--DNAVNTDTVMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEK 263


>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
          Length = 226

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLR 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +   G+ G +++     E   +L  S   D   ++  L       +
Sbjct: 3   LLVIEDDPDLNRQLVNALGEAGYAVDTAFDGEEGHFLGDSEPYDAVVLDIGL--PKLDGI 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +     RA  ++P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLEHWRRAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+      D + + R LGY +
Sbjct: 180 EQDFDRDSNTIEVFVGRLRKKIDC----DVIQTVRGLGYLL 216


>gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 242

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD + ++        + G  +   N  +         R D+  ++      G+  L
Sbjct: 7   IWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLM--MPGDDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R      P++ ++        +   + G DD + KP   RE        +  R 
Sbjct: 65  TILRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVLRRRG 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A               G   +    R  E  GE   +   E  +L   + N  + +++ +
Sbjct: 125 AVPAGTPVADGEVIGFGNNSLDLSARTLERDGEPVVITSGEFGLLAAFVQNPHRPLSRER 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G      +   ++  +S++RK +  +      + +    GY  
Sbjct: 185 LIELARGPS-SETDSRSMDVQVSRVRKLIEPDPSRPRYLQTVWGYGYVF 232


>gi|59713362|ref|YP_206137.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Vibrio fischeri ES114]
 gi|197337719|ref|YP_002157770.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11]
 gi|59481610|gb|AAW87249.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Vibrio fischeri ES114]
 gi|197314971|gb|ACH64420.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11]
          Length = 226

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       + G +++         +  ++ + D+  ++  L        
Sbjct: 3   LLIIEDETKTGEYLKKGLTESGYTVDLSQDGADGLYNATTNQYDLIILDVML--PKLNGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA----IY 116
           ++ + +R   +  P+I ++    +   +  F+ G +D + KP    E+ ARV        
Sbjct: 61  QILQTLRNCENDTPIIMLTAKDQIDDRVKGFELGANDYLIKPFAFAELKARVENALRAKS 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S+N      +++    R      +   L  +E  +LE  M  +G+ +++T I S 
Sbjct: 121 VISQPSSNELVLHDLKLDLLKRTATRNQDNITLTAKEFSLLELFMRKQGEVLSRTTIASL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I+ + +   + NV++  + +LR K+        + + R +GY +D 
Sbjct: 181 IWDM-NFDSDTNVIDVAVKRLRSKIDKPYDTPLIHTVRGMGYKMDE 225


>gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +   +    +   +      +            +  ++  +       +
Sbjct: 3   ILLIEDDIEISEMLCSYLIAENFEVVCATDGQKACEAFDIGFYSIVLLDLMI--PKITGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP+I IS   S          G DD + KP    E++AR+ A  RR   
Sbjct: 61  NVMKYIRQKSTVPIIIISAKDSDSDKTLGLGLGADDYITKPFSITEVMARIKANIRRNTE 120

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+ +  +       GE+  L  +E  IL  L+ N  +   K QI+S
Sbjct: 121 YAAVQPEQTKLVWGPLVMNLENHTVTKSGEIIELTAKEFDILRLLLENPQRVYTKAQIYS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            I+       +EN V  HIS+LR K+ +       V +   +GY +
Sbjct: 181 LIW-NDAYMGDENAVNVHISRLRTKIEDDPRKPQVVITVWGIGYKL 225


>gi|260432770|ref|ZP_05786741.1| transcriptional regulatory protein ChvI [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416598|gb|EEX09857.1| transcriptional regulatory protein ChvI [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 234

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVAMTLEAEGFEVETYNDGQAALEAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           +L + +R  +Q+P+I ++        +     G DD V KP              R   A
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +R+         +G    L   E  +L+ L    G   ++
Sbjct: 122 TEGDAAAATTGDAKVMERGHLRMDPLRHAVSWKGVDVSLTVTEFLLLQALAQRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 DQLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRTADPEFSAIETLYGIGYRYNE 233


>gi|238917580|ref|YP_002931097.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872940|gb|ACR72650.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 220

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KLNMEELHRYDLILLDIM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYMPIKTVWGIGYKWEE 220


>gi|299822982|ref|ZP_07054868.1| response regulator [Listeria grayi DSM 20601]
 gi|299816511|gb|EFI83749.1| response regulator [Listeria grayi DSM 20601]
          Length = 226

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +  N       L  +   D   ++  L       +
Sbjct: 4   ILIIEDEKNLSRFIELELQHENYETQVANDGRSGLELALNEDWDAILLDLML--PHLNGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   Q P+I I+   S+   +   D G DD + KP    E+LAR+ ++ RR++ 
Sbjct: 62  EVCRRLRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVEH 121

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E   I V  + R  +   E+  L +RE  +L  LM N    + +  + + 
Sbjct: 122 AEEAAKQTTLEYRDIVVEKENRIVKRGDEIIDLTKREYELLLTLMENINIVLTREVLLNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  VE NVV+ ++  LR K+ +      + + R  GY +
Sbjct: 182 VWG-YETEVETNVVDVYVRYLRNKIDHPSEESYIQTVRGTGYVM 224


>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 236

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R   
Sbjct: 74  VLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRNTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        ++  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +  ++      +       S R  ++ I    +      L
Sbjct: 5   ILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ R IR +  +P++ ++    +   +   D+G DD + KP    E    +  +    + 
Sbjct: 65  EVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRHSQN 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++      + + +  R       +  L +RE  +L  L+ N G+ + + ++ + ++
Sbjct: 125 QATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELLNLVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 185 GV-DFEGQPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 228


>gi|291087886|ref|ZP_06572149.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291073605|gb|EFE10969.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 251

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 21/238 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++ G        G  +           +       ++ ++          +
Sbjct: 16  ILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVIEKEEIHLAIVDIM--MPRMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR + 
Sbjct: 74  TMVIKLREQYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 133

Query: 122 SN----------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                             N    G + +  D  +  V G    +   E +IL  LM N G
Sbjct: 134 FMKLLEEKEAGGQEEQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 193

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              +  +I+  ++      ++   V  H+  +R+K+  N      +     +GY I+ 
Sbjct: 194 HVFSAEEIYERVWNERAVNID--TVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIEK 249


>gi|188532493|ref|YP_001906290.1| DNA-binding transcriptional regulator BasR [Erwinia tasmaniensis
           Et1/99]
 gi|188027535|emb|CAO95382.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 220

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++ G       +G +++   +         S +  +  ++  L        
Sbjct: 3   ILIVEDDALLQQGLSLALSGEGYAVDCAANAAQGAAFLQSGQYSLVVLDLGL--PDRDGA 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R     +P++ ++   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  HLLRQWRKEQQDLPVLILTARDALSDRVDGLDAGADDYLIKPFALAELKARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GKSDNLLQHGDISLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E HI  LR+KL    G + + + R +GY ++ 
Sbjct: 181 WQD-DTSSNTLEVHIHNLRRKL----GKERIKTVRGVGYRLEE 218


>gi|153008974|ref|YP_001370189.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560862|gb|ABS14360.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 235

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 16  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVM--MPGETGV 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 74  SLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 133

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       G+ + + ++    
Sbjct: 134 PAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGETIPRHELT--- 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 191 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 232


>gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  S   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R   + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 229

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  ++  +  E    L  +    +  ++  L        
Sbjct: 3   LLMIDDDTGLCELLSEYLTAQGFEIQSVHDGEQGLKLAQANDYALILLDVML--PTLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114
           E+ + +R     P+I ++        +   + G DD + KP +HRE       I  R+  
Sbjct: 61  EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           I      + ++     I V    R+  + G    L   E  IL  L  N G+ V+K QI 
Sbjct: 121 INSLNVATTSKLLVNGITVNLAAREASIDGSTLTLTGTEYEILTLLCKNAGEVVSKEQIS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    + +   ++ H+S +RKK+   +  + + + R  GY  
Sbjct: 181 EEVLGRRLASFD-RSIDMHVSNIRKKIAEHIPGERIKTMRGTGYVF 225


>gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
 gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
          Length = 219

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +++ F   +       SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTVDWFTDGQQGMTALDSAPYDAVILDLSL--PGIDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A I R   
Sbjct: 62  ILRCWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGSH----FIRTVHGVGYTL 216


>gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 252

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ +    DV+ I+  L       L
Sbjct: 30  ILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGTENAYDVAIIDRML--PRRDGL 87

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 88  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 148 TPDQDVLYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 208 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 248


>gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 232

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRML--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E    RV               G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRSKIDRGFEHPMIHTVRGAGYVI 224


>gi|77458959|ref|YP_348465.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382962|gb|ABA74475.1| putative two-component response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 237

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G +++     +      +  +  +  +E  L    +  L 
Sbjct: 10  LLVEDDQRLAKLITKFLARHGFAVQVVRRGDQALAAIAELKPQIVVLELLL--PDQNGLH 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR    +P+I ++     +  +   +SG DD V KP+     LAR+ A+ RR   +
Sbjct: 68  LCRRIRDGFDIPIIILTAKGDDRDQVLGLESGADDYVVKPVKPSVFLARLRALLRRHIPT 127

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G + +   GR   +  +   L   E  +L  L +  G   ++ +I + I
Sbjct: 128 KQPTALDILEFGQLSIDRSGRVVSLADQRIDLTTMEFELLSLLASAAGTLFSRDEILNRI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G+         V+ HISKLR KL +     + + +    GY  +
Sbjct: 188 RGIP-FDGINRSVDVHISKLRGKLNDNPRNPELIKTIWGRGYLFN 231


>gi|83309373|ref|YP_419637.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944214|dbj|BAE49078.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 246

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +          +S   D++ ++          +
Sbjct: 20  IALVDDDRNILTSVSMALEAEGFKVRTYTDGAEALRGLTSQPADLAVLDI--KMPRMDGM 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S +P+I ++        L     G DD + KP   + ++ R+  + RRL+ 
Sbjct: 78  ELLQRLRKQSAIPVIFLTSKDDEIDELLGLRMGADDYIKKPFSQKLLIERIRTLIRRLEA 137

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   AE G          +         +G+   L   E  +L+ L    G    + Q+ 
Sbjct: 138 NAEGAEQGGETLVRGLLVLDPGRHICTWKGKPVDLTVTEFLLLKSLAMRPGHVKNRDQLI 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            A YG     V++  ++SHI +LRKK R     F  +++   +GY 
Sbjct: 198 DAAYGESIY-VDDRTIDSHIKRLRKKFREVDDDFAQIETLYGVGYR 242


>gi|116625937|ref|YP_828093.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229099|gb|ABJ87808.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 242

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +                   DV  ++  L       +
Sbjct: 19  ILIVEDDRKLARQLKKGVDESGHASILAFDGREGLEAAQGNEFDVIVLDVML--PKLDGI 76

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++   +        D+G DD + KP   + +LAR+ A+ RR +
Sbjct: 77  SVLRQLRQTRIGTPILLLTALDTPDDISTGLDAGADDYLTKPFSFKVLLARLRALSRRRQ 136

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +     D +  G +  L + E  ILE LM + G+ + +T++  A++G
Sbjct: 137 ADRQTLLRIADLALDPATHDVKRAGAMVSLSKTEFVILEILMRSSGRVITRTRLIDAVWG 196

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V+ N ++  I +LR K+        + + R +GY++
Sbjct: 197 -HERDVQSNTLDVFIRQLRTKIEPAGTTKLLHTVRGIGYTL 236


>gi|283835062|ref|ZP_06354803.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
 gi|291069354|gb|EFE07463.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  + +   +G S+E F               D   ++  L       
Sbjct: 5   LIWLVEDEQGIADTLVYMLQQEGFSVEAFERGLPVLEKARQRCPDAIILDVGL--PDISG 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
            EL R +   H  +P++ ++        L   + G DD V KP   RE+ ARV       
Sbjct: 63  FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++     +    G   +          G    L R E  +L+ L+ + G+  ++ Q+   
Sbjct: 123 QKFASPASTTRCGDFELNELAAQITWFGIPLTLTRYEFLLLKTLLMSPGRIYSRQQLMDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +   +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 183 VW-ADAQDTFDRTVDTHIKTLRAKLRAINPEISPINTHRGMGYSL 226


>gi|227514441|ref|ZP_03944490.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087191|gb|EEI22503.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 250

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +          E      ++  +D   +   L    +  +
Sbjct: 13  ILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKDGM 72

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108
           ++   IR  S   P+I ++   S    +   + G DD V KP               R  
Sbjct: 73  QVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRRVQ 132

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           L+ +A    ++    +   +                 +  L  +E  +L+ L +   +  
Sbjct: 133 LSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQVF 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 193 TREQLLQLVWD-YEFYGDERTVDAHIKKLRQKIE-KVGPKVIQTVWGVGYKFD 243


>gi|255101735|ref|ZP_05330712.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307604|ref|ZP_05351775.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 238

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++    +      +  +    ++ ++          +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMKLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 122 SNNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N       +V                + ++  + G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  +I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 FSADEIYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237


>gi|223984338|ref|ZP_03634480.1| hypothetical protein HOLDEFILI_01774 [Holdemania filiformis DSM
           12042]
 gi|223963695|gb|EEF68065.1| hypothetical protein HOLDEFILI_01774 [Holdemania filiformis DSM
           12042]
          Length = 232

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD+  +      +  DDG      ++   E    +  + R D++ ++  L      
Sbjct: 11  ILLVDDQPELLTLVREILTDDGF-CHLASAGTVEQGLAVCRTQRPDLAILDVML--PDGD 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              L + +R  S++P++ ++        L     G DD + KP   +E+L R+ A+ RR 
Sbjct: 68  GFSLLKQLRQFSEMPVLFLTARDEADDKLAGLGLGADDYIVKPFLPQELLLRIHAVLRRC 127

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         V     +   Q +   L  +E  +LE L+ N G+ V    +  A++
Sbjct: 128 YKEAGEQIQLAACTVDFSRAEVYRQDQTLALTAKEHALLETLVRNEGRIVTFDALCEALW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  +    EN + +H+ ++R+K+  +      + + + LGY +
Sbjct: 188 GE-NPFGYENSLNAHVRRVREKIEADPSHPVSLITVKGLGYKL 229


>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
 gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
          Length = 221

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++D  +      G S    +       +  +   D++ ++            
Sbjct: 5   LVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIM--MPHLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + +I R    +P+I ++        L  +D G DD + KP   + +LA+V A       +
Sbjct: 63  VCKIAREMYNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRRSSSE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        V G+   L  +E  +L + M N+ +  ++ Q+ + I+G 
Sbjct: 123 NTPETLTVGNLTLIPTSHSVMVAGDDVDLTYKEFELLRFFMQNKNQVFSREQLLNRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D       V++HI  LR+KL  +     + +    GY  + 
Sbjct: 182 YDFEGNTRTVDTHIKTLRQKLGAEG--RYIVTLIRSGYKFEV 221


>gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51]
 gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++     +  +DG              +  +   D+  ++           
Sbjct: 3   IMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAENPDLVILDVM--MPKLNGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112
           ++   +R   S VP+I +S    +      F +G DD + KP             +  R 
Sbjct: 61  DVCTQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALLRRRE 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +      + G + +     +  ++G+   L  +E +IL Y+  + G+   + Q
Sbjct: 121 HQTGGAGEAEKESIKLGDLEILFKRYEARLKGKRVELTPKEFKILAYMAGHPGEVFTREQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + + ++G  D   E   +   I K+R+K+  +      + +   +GY  
Sbjct: 181 LLTYVWGE-DYVGELTGIAVFIRKIREKIEEDPSKPKYLQTVWGVGYKF 228


>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 236

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMI--PGINGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 256

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 90/236 (38%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G+           +    + R D+  ++      GE  L
Sbjct: 7   ILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLM--MPGEDGL 64

Query: 62  ELPRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            L R +RA    H+  P++ ++        +   + G DD + KP   RE+ AR+ A+ R
Sbjct: 65  TLCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVLR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRG 165
           R +      +  P       R    + +               L   E R+L   +++  
Sbjct: 125 RTRALPPNLDAAPPANARLLRFAHWRLDTINRHLVDAEGTVVALSGAEYRMLAVFLSHPQ 184

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           K +++ Q+     G  +  V +  ++  +S+LR++L +       + + R  GY +
Sbjct: 185 KVLSRDQLMELTQGR-EADVFDRSIDLLVSRLRQRLGDNAREPAIIKTVRNEGYVL 239


>gi|315173321|gb|EFU17338.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
          Length = 228

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I I+   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQVKNTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLH 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 223

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDSFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    + S    DV+ ++  L   G    
Sbjct: 7   ILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVML--PGIDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYV 226


>gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa]
          Length = 234

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          DG+++     L        +   D   ++  L       L+
Sbjct: 8   LLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGL--PDGNGLD 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
             R +R     VPL+ +S        +   + G DD + KP   RE++AR          
Sbjct: 66  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQR 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    ++         + + G+   +QG    L RRE ++L  L+   G+ +++  +  
Sbjct: 126 LQPAPTASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +I+G  D    +  V++H+  LR KLR      D + + R +GYS+
Sbjct: 186 SIWGQ-DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230


>gi|171911993|ref|ZP_02927463.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 235

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   V++         G                   + D   ++      G   
Sbjct: 6   LILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRRRKPDAIVLDVM--MPGRDG 63

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115
             + + +R       +P+I ++     Q  +   + G DD ++KP   +E++ RV A   
Sbjct: 64  FGVCQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQALLR 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S +  + GP      G    + G+   L   E ++L  L + +G+ V +  I  
Sbjct: 124 RAATVGSGSELKEGPFEFDLSGVKLNLGGQPMDLTLLEFKLLHLLASRKGEVVERDFILR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G + E V    +++H+ +LR+KL      + + + R  GY  
Sbjct: 184 EVWG-YTEQVRTRTLDTHVKRLREKLGEH--AEWLQTSRGFGYIF 225


>gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2]
 gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1]
 gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
 gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A + R  
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY  
Sbjct: 180 PDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGYLF 220


>gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440]
 gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida]
 gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida]
 gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
 gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +    D  +   QG +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRL 220


>gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236]
 gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae
           MJ-1236]
 gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae
           LMA3894-4]
          Length = 240

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
 gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
          Length = 236

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                ++++    +    R D+  ++  L   G   +E
Sbjct: 7   LVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWML--PGGSGIE 64

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           L R ++      ++P+I ++   +    +   + G DD + KP   RE++AR+ A     
Sbjct: 65  LLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKALLRRS 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  S +R +   + +    R   +  +   +   E  +L++ M++  +  ++ Q+   +
Sbjct: 125 GVGESTDRMQVSELVLDGKSRRVFLAEQPLDMGPTEFNLLQFFMSHPERAYSRNQMLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L    K     + + R  GY  
Sbjct: 185 WGA-NVYVEERTVDVHIRRLRKALQIEGKDYSGVIQTVRGTGYRF 228


>gi|217976450|ref|YP_002360597.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501826|gb|ACK49235.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 231

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L+DD   +          +G  ++ +           S   D++  +          
Sbjct: 3   VIALVDDDRNILTSVSIALEGEGYRVQTYTDGSTALDGLKSDPPDLAIFDI--KMPRMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR  
Sbjct: 61  MELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAILRRAN 120

Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +  ++             ++  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 121 PKDAASQKEADAKILERGLLKMDPERHACTWKDDPVTLTVTEFLILQALATRPGVVKSRN 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 181 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRF 229


>gi|28211448|ref|NP_782392.1| two-component response regulator [Clostridium tetani E88]
 gi|28203889|gb|AAO36329.1| two-component response regulator [Clostridium tetani E88]
          Length = 240

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G S+    + E  E      + D S I   ++      +E
Sbjct: 15  LIVEDDKEINNLISKALIKEGFSV--VQAFEGIEGYSKYRKIDFSIIILDIMLPYLNGIE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116
           + + IR  S VP+I IS        +   + G DD + KP          +   R    +
Sbjct: 73  IMKKIREESVVPIILISAKDEEYDRIIGLELGADDYIVKPFFVGELVARIKSQLRRYIDF 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +R + G I +  +       GE   L  +E  +L+    N  +   K QIF  
Sbjct: 133 HKNDEVISRIQKGDIILDLNNYCIYKNGEKIDLTAKEFGLLKLFFTNPNRVFTKMQIFEN 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   +   ++N +  +I +LR K+ +     + + +   +GY +
Sbjct: 193 VWHE-EYRGDDNTIMVNIRRLRNKIEDDPNNPEYILTVWGIGYKL 236


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D    ++     E       S   D+  ++  L        
Sbjct: 3   ILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVML--PKLSGT 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R    + P++ ++   + +  +   D+G DD V KP    E+ AR+ A + R  
Sbjct: 61  ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   +R+  +  +    G    L  +E ++LE  + N    ++++QI   ++ 
Sbjct: 121 TTLPPVLEWENLRLNPNSCEVNYAGHPLHLTPKEYKLLELFLRNTHLVLSRSQILDHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D    E  V+ HI +LRKKL+      D +++   LGY +
Sbjct: 181 FED-PPSEEAVKVHIKELRKKLKAVGASPDLIETVYGLGYRL 221


>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 226

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|261407257|ref|YP_003243498.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283720|gb|ACX65691.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 224

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F  +G  +                  D+  ++       E  L
Sbjct: 4   ILIVDDEADLRKLLTDYFEINGYFVMTAKDSREAMRKVELG-PDLVLLDIN--MPEESGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+   IR     P++ ++        +  F +G DD + KP   RE    +       +R
Sbjct: 61  EICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLRREQR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +      + +    R+   Q +  PL ++E  I+E L  N G    K +I+  I+
Sbjct: 121 VPTKASVRFNHDLVINYTARELYFQDKRIPLAKKEFGIIELLSMNPGMVFEKERIYEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL DE  + +V+  HI ++R K +     D +++   +GY 
Sbjct: 181 GL-DEEGDSSVIAEHIRRIRNKFKEYGCSDRIETVWGVGYK 220


>gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 14]
          Length = 239

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  +++D         G  +    +      L  + +  +  ++           E
Sbjct: 9   LLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLM--MPRLTGFE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117
           + + IR  S VP+I ++   + +  +  FD G DD + KP    E           + + 
Sbjct: 67  VCQRIREQSIVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQWS 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++     G + +  +       G    L   E  +L YL+ +  K +    +   +
Sbjct: 127 VQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      E   +  +I +LR+KL  +      + ++  +GY  
Sbjct: 187 WGDQYRD-EAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRF 229


>gi|323136350|ref|ZP_08071432.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398424|gb|EFY00944.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 256

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + +           D+  ++      GE   
Sbjct: 23  ILVVDDDKRIRTLLSRYLANEGYLVSSAANAQEASERLRDLAFDLIVLDVM--MPGESGK 80

Query: 62  ELPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAA 114
           +    +R   +     P++ ++        ++  ++GVDD + KP   RE    +A +  
Sbjct: 81  QFAARLRESGEPQASAPILMLTALAETADRVEGLEAGVDDYLAKPFDPRELSLRIASILR 140

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             RR + S+  A  G         +    GE   L  RER ++  L+ + G  V++  + 
Sbjct: 141 RSRRHEPSDGLARFGAFVFDPARGELLRDGEPVKLTTRERDLMRALVEHAGAIVSRQTLA 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  ++   E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 201 QR---ASEQNASERSVDVEIARLRRKIETDPNAPRHLQTVRGHGYRL 244


>gi|315655078|ref|ZP_07907980.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315490559|gb|EFU80182.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 227

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF   +           ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYQEFREAMMELLPEMILLDIML--PGVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---- 113
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E+++R+     
Sbjct: 59  IQILRRIRANPETEGIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               +             G I +        V+G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLG--PAAKHIETVRGVGYKI 225


>gi|300723604|ref|YP_003712909.1| response regulator in two-component regulatory system with PhoQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630126|emb|CBJ90763.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 227

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++          G  ++   + +  ++       D++ I+  L   GE  L
Sbjct: 3   ILIVEDNALLRHHLTVQLRGIGHQVDAAENAKEADYYLKENHPDIAIIDLGL--PGEDGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R        +P++ ++   S Q  +   ++G DD V KP H  EI AR+ A+ RR  
Sbjct: 61  SMLRRWRNEQINLPILVLTARESWQEKVAVLNAGADDYVTKPFHLEEINARIQALMRRNS 120

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++        +    ++  V      L   E  I+E LM N GK V+K  +   +Y 
Sbjct: 121 GLASQIVALSPFLIDLSRKEFSVNETNIRLTAFEYTIIETLMRNNGKVVSKESLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKK+ N+   + + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKILNQWPEEVIVTVRGQGYRFDV 222


>gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 223

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +                  D   I   ++       
Sbjct: 4   ILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENS-DYDVIIMDVMMPELDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                I+    +P+I +S        +  F++GVDD V KP   +E++ RV  +  R K 
Sbjct: 63  SACSEIKKIKDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVNVVTSRSKP 122

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A+        V    R   + G+   +  +E  +L YL+ N+   + + ++ + ++
Sbjct: 123 EAVSADIFRYEGLEVNFTARTVSIDGKRIEMSPKEYELLFYLVRNKNIALERERLITEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   ++  +++HI  LR  L +      + + R +GY  + 
Sbjct: 183 G-YDYYGDDRTLDTHIKLLRNSLGDY--RKLLVTLRGVGYRFEV 223


>gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
          Length = 222

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++  Y ++    G S+    + E       +   ++   +  +    G  +
Sbjct: 4   ILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYDL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 64  VGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   T        D          F LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSILTIGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEKTEDFQII-TVRGLGYK 219


>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 226

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  S E      S A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 223

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|38230268|gb|AAR14189.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N       I    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLVNVRGVGYRLD 238


>gi|77969647|gb|ABB11026.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 248

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  I   G DG+        +         R D+ A++  L        
Sbjct: 18  ILIVEDEVAIADTIIYALGTDGMQTVHCTLGQAALDHLRDTRFDLVALDVGL--PDLSGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 76  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVIKPFSPRELAARVRVILRRFYR 135

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                        +DG      G    L R E  +L  L+ + G+  +
Sbjct: 136 TAAPESPLAPAPAPAATIAPGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIYS 195

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + Q+   ++        +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 196 REQLMDLVWHEA-FDSADRTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 246


>gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +           L ++ + D+  ++  L       ++
Sbjct: 5   LVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGL--PDMDGID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           +   +R  S +P++ +S        +   D+G DD V KP    E+    R +    R  
Sbjct: 63  VIGGVRGWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  R  T    +    +      E   L   E  IL+ L  + G+ V   Q+   ++G 
Sbjct: 123 SAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGP 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                E + +  ++++LR+KL  +      + ++  +GY +
Sbjct: 183 T-YRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRL 222


>gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 222

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   ++  Y ++    G S+    + E       + R ++   +  +    G  +
Sbjct: 4   ILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYDL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 64  VGSLR--NARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +          D            LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSSLIIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEKTEDFQII-TVRGLGYK 219


>gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
 gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
          Length = 227

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +    D  +   +G +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFAKPLLQTVHGVGYRL 220


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLG------FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+     +            +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G     F S        +    D+  ++  L        
Sbjct: 5   IMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGL--PDMSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR    VP+I ++        +   + G DD + KP   RE+ ARV A+ RR   
Sbjct: 63  ELCKQIRQLRSVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGT 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  +        ++ +           L R E  IL+  +   G   ++ Q+   ++  
Sbjct: 123 GNKPSPCTGTFAVNESKRQISYLGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEH 182

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            D +++   +++HI  +R KLR  + G DP+ + R  GY++
Sbjct: 183 PDCSLD-RTIDAHIKNIRAKLRTIEPGKDPIVTYRGTGYAL 222


>gi|41406357|ref|NP_959193.1| hypothetical protein MAP0259 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118466148|ref|YP_879593.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|41394705|gb|AAS02576.1| hypothetical protein MAP_0259 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118167435|gb|ABK68332.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 246

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD A++ +        +G ++   +          + R DV  ++  L    G  VL
Sbjct: 24  LVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDVMLPDMSGLDVL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    + Q+P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 84  HKLRE--ENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 141

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 142 TTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 202 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 242


>gi|325928055|ref|ZP_08189268.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
 gi|78037001|emb|CAJ24719.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541553|gb|EGD13082.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
          Length = 234

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 13  LVVEDEAAIADTVLYALRSEGYAPEHCLLGRDALTRLRADPADVVVLDVGL--PDINGFE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ SQVP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 71  VCRTLRSFSQVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRHAG 130

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G   +  +G        + PL R E  +L  L+   G  +++ Q+    +
Sbjct: 131 APAESGWQPHGAFAIDREGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRAQLMDRGW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
               ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 191 DASADSAD-RTVDTHIKTLRGKLRLAGVPADPIRTHRGLGYALEV 234


>gi|331268666|ref|YP_004395158.1| two-component response regulator [Clostridium botulinum BKT015925]
 gi|329125216|gb|AEB75161.1| two-component response regulator [Clostridium botulinum BKT015925]
          Length = 233

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 80/226 (35%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +   +   ++        +  + D+  ++  L         
Sbjct: 6   LVIEDDIEIASIIRKHLTRENYDVNWSSTGSEGLKDFNKDKYDLVILDIML--PEMDGFM 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ +S        +     G DD + KP    E+ ARV    +R K  
Sbjct: 64  VCKNIRLISNVPILILSAKKQELDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGD 123

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N +++   +  +              V  +   L  +E  +L  +  N  K   K  ++ 
Sbjct: 124 NKKSQKQDVWSYKQGLKIIKDEMRVTVNDDEIELTAKEFALLVLMAQNENKVFTKKDLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            I+   +     N +  HI +LR+K+  +      + +    GY  
Sbjct: 184 NIWHQNNLEGN-NTITVHIKELRQKIKEDVKHPQYIQTVWGTGYKF 228


>gi|319936869|ref|ZP_08011281.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319808137|gb|EFW04709.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G  +E   +         + + D+  ++          +
Sbjct: 6   ILVIDDEKEITDLIEIYLSQEGYHVEKRYNALTLLEDIRTYQIDLVILDVM--MPEINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  ++IR    +P+I +S   +    ++   +G DD V+KP +  E++ARV +  RR +V
Sbjct: 64  QALKMIREKYNIPVIIVSAKTADNDKIEGLLTGADDYVSKPFNAMELVARVKSQLRRFQV 123

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N                + +  +   +  +   L R E  IL  L +  G   +   IF
Sbjct: 124 FNKPINDSSHIIEASDLIIDTQKKSVTLDNQSLALTRIEYEILVLLASQPGTVFSIEDIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+         N +  HI KLR+K+         + +   +GY  D
Sbjct: 184 EKIWHEKSTN-SNNTIMVHIRKLREKIERQPRNPRHIKTVWGIGYKFD 230


>gi|312867237|ref|ZP_07727447.1| response regulator protein GraR [Streptococcus parasanguinis F0405]
 gi|311097366|gb|EFQ55600.1| response regulator protein GraR [Streptococcus parasanguinis F0405]
          Length = 225

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++     L    G  +           +   +   +  ++  L        
Sbjct: 4   ILLVEDDDIIRQQVKQLLEQWGYEVVAVEDFMDVLGIFVESDPHLILMDIGLPL--YNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP     +LA+V         
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E     +     D   +GEV  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGTDQNLLEHRGAILNLKSTDLVYEGEVIKLTKNEFQILRVLFEHAGSIVARDDMMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL      + +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGY 220


>gi|307943679|ref|ZP_07659023.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
 gi|307773309|gb|EFO32526.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
          Length = 236

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G                  +  D   ++  L       L
Sbjct: 4   ILVVEDDRNISDVICFALEKAGYRAVVAPDGLAAVTTFKGSSFDFIVLDVGL--PELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
           E+ R IR  S+VP++ +S        +   + G DD V KP   RE++ARV+AI      
Sbjct: 62  EVCRQIRCMSEVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVSAILRRGKL 121

Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R    ++    G + +  +     +      L + E  IL  L+        +++I 
Sbjct: 122 GMAREGEEDDCLHHGDLVLKPEAFTARINQTALGLTKLEFSILHILVKRPTMVFERSRIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              Y   +  V +  ++SHI  LR K       D +++   +G+ I
Sbjct: 182 DLAY-PDNIHVSDRTIDSHIRNLRAKFAKVGCEDVIETVHGVGFRI 226


>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +               +     E       +   D+  ++  L        
Sbjct: 3   ILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPYDLLILDVML--PSLDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ R +R AH  +P++ ++    +   +   D G DD + KP   RE+ ARV A+  R  
Sbjct: 61  EVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRREK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +   I + +  R+         L  RE  +LE+L+ +  + +++  I   ++ 
Sbjct: 121 SATSATLQFEDITLDTQTREAWRGSRQLTLSSREYALLEFLLHHPRQVLSRETIADHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + N+++ +I  LR KL      D + + R +GY +
Sbjct: 181 -GEAPYQSNIIDVYIRYLRNKLCASGEPDVIQAIRGVGYQL 220


>gi|110803699|ref|YP_697777.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684200|gb|ABG87570.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 234

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++   ++      +       ++ ++            
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIM--MPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRERYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLG------FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+     +            +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N+ E    L  + + D+  ++          +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALL-NDQIDLILLDVM--MPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E  + +R   + P++ ++        +   + G DD + KP   RE++        R  +
Sbjct: 61  ETLKRLRETWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRRTQS 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +   +++  E   I+ F   ++   QGE+  L   E  +L + + + G  + K  + 
Sbjct: 121 SNNKAAKNSDCIEYQDIQAFPGKQEAYCQGELIDLTTTEFALLAHFIQHPGDTLTKEALS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 LDVLGKRLAAFD-RAIDMHVSNLRKKLPERADGKSRIKTIRGRGYLL 226


>gi|257418638|ref|ZP_05595632.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257160466|gb|EEU90426.1| DNA-binding response regulator [Enterococcus faecalis T11]
          Length = 233

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 9   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLML--PELNGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 67  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 126

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 127 EGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 187 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 231


>gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
 gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
          Length = 228

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G  +E                 D+  ++      G   LE
Sbjct: 7   LVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVM--MPGFDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   +
Sbjct: 65  VCRRIQAVRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADRA 124

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + A         G + +    R      +   L R E  ++ YL       + +  +  
Sbjct: 125 EHAARPVADLLEFGDVVIDLTERRVRRDAQEVHLTRTEFDLIAYLAERPRAAIPRESLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I+G  + A     V+SH+  LR+KL    G   + +   +GY+ D 
Sbjct: 185 EIWGWGEGAG-SRTVDSHVKALRRKL----GPSVIRTVHGVGYAWDV 226


>gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 223

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 240

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSSEETIIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  +   +         +S   D+  ++  L        
Sbjct: 4   ILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIML--PDGNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ + +R  SQVP+I ++        +   D G DD + KP   +E ++R+         
Sbjct: 62  DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       I + ++  +   +G    L  +E ++L   M N  + +++ +I   + 
Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               E  + N +  +I ++R+K+  +    + + +KR  GY  D
Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 225


>gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 225

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D        +    + G  ++     E       S+  DV  ++  L    G  V
Sbjct: 3   ILVIEDDLEAAAYVVKGLRESGHIVDHAADGEEGLTFALSSTFDVMIVDRMLPKRDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           +E  R      + P++ +S    +   +    +G DD + KP    E+     V      
Sbjct: 63  VETLRE--ECVRTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRAN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R + G + +    R     G    L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GYS+
Sbjct: 181 -EYHFDPQTNVIDVHISRLRAKIDKNFEQPLLHTVRGAGYSL 221


>gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 222

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +I+D   + +       ++G ++   ++ E    +      D+  ++  L   +G  V
Sbjct: 3   IAIIEDEIGITNFLKQGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQGIDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R   A    P++ ++   ++  T++   +G +D + KP    E+LAR+   +R  +
Sbjct: 63  CRLIRQ--ADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFREKE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  N+ + G I +          GE  PL +RE  +LE+L+AN+G+  ++  I   I+ +
Sbjct: 121 VLKNQLKLGNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D   +  V++  I+ +RKKL        + + R +GY
Sbjct: 181 -DFDYDTGVIDVFINAIRKKLSMDKDEGYIKTIRGVGY 217


>gi|289422314|ref|ZP_06424164.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289157259|gb|EFD05874.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 237

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D       + G  +   ++ +    +       ++ ++            
Sbjct: 7   LLVEDEKDIADAVEVYLRNQGYEVIKASNGQEGLEMIEKNEVHLAIVDLM--MPVMDGTT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------------HHREIL 109
           +   +R     P+I +S        +   + G DD VNKP                    
Sbjct: 65  MIMKLREKYDFPVIILSAKSEEVDKIMGLNIGADDYVNKPFKPLELLARVNSQLRRYTKY 124

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +         ++     G + +    R   V G    +   E +I+  L+ N G+  +
Sbjct: 125 LNLVKEGGEENKNDGIYTIGGLELNEHTRVVTVDGLPVKITPIEFKIINLLIKNPGRVYS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             +I+  ++   + A+  + V  HI  +R+K+  +      +     +GY ID 
Sbjct: 185 SEEIYEKVWN--ETAISTDTVMVHIRNIREKIELDSKNPKYLKVVWGVGYKIDK 236


>gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae
           T7901]
          Length = 225

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++      F      ++     E   W       D + I+  L       +E
Sbjct: 4   LIVEDEAAIRQQLTDYFSSQNFVIDAVADGEEGAWQAVEYDYDFAVIDLGL--PKLDGME 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   + P++ ++     Q  ++  ++G DD + KP H+ E+ AR  A+ RR   
Sbjct: 62  IIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRAAG 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     + GPI + +  +   V      L   E   LEYL  + GK V+KT++   +Y  
Sbjct: 122 SATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLYHQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + NV+E  I +LRKKL       P+ + R  GY  
Sbjct: 182 -DFERDSNVIEVFIGRLRKKLDPDNQLKPISTIRGQGYRF 220


>gi|238923307|ref|YP_002936822.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238874981|gb|ACR74688.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 218

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G S            +      D+  ++  L        
Sbjct: 5   ILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVML--PKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I     +P+I ++   +L   L    SG +D + KP    E+LARV  + RR   
Sbjct: 63  ELMEYI-KPLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     I + +  ++    G+   L  +E  +LE LM N+   + + +I+  I+G  
Sbjct: 122 MEQQLTFKDIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG-S 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +VE   ++ HI +LRKKL      D + +    GY ++ 
Sbjct: 181 EYSVESRTLDLHIQRLRKKLD---IGDSLKTVFKAGYRLEE 218


>gi|256826788|ref|YP_003150747.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582931|gb|ACU94065.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 271

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++    L   +G  ++             +A  ++  ++  L        
Sbjct: 8   IYIVEDDRTMRENLRTLLEHNGYIVQVLEDFSAPVESILAASANLILLDLNL--PHADGR 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            + R IR  S +P+I ++   S    L   + G DD + KP + + +LA VA        
Sbjct: 66  FICREIRRESNIPIIVVTGDDSDLDELICLNFGADDFIAKPYNPQVLLAHVASVLKRTAS 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G + + ++       G+   L + E RIL  LM N GK V + +I   ++
Sbjct: 126 SVATPAHHTVGGVSLDAECCRVSFAGKQADLTKNELRILSLLMRNAGKIVPRERIQEELW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              DE +++N +  ++S LR  L      D + +KR +GYS + 
Sbjct: 186 -NSDEFIDDNTLTVNVSHLRHTLSTIGADDFIRTKRGIGYSFEV 228


>gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 234

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +  I    +DG  +           +  +   D+  ++  L       L
Sbjct: 4   ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILL--PQMNGL 61

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILA 110
           ++ + IR       P++ ++   S +  +   D+G DD ++KP    E            
Sbjct: 62  DVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLRRK 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +   + ++ N       +++    +      +   L   E R+L   M +  K   +
Sbjct: 122 SEISKSVQSQLKNEVYRYSVLKLDDYQKVAYCNDQELNLTSTEYRLLLLFMRSPKKVFMR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++   ++G+ +  +  NVV+ +++ LR+K+        + +   +GY +
Sbjct: 182 SELLDEVWGI-NFDIGSNVVDVYVNYLRRKIEKHSPMKLIHTVIGMGYVL 230


>gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
 gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  +       L      D+  ++  L        
Sbjct: 22  ILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNL--PTMDGW 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+  +IR   Q  +I ++    L+  +   +SG DD + KP    E+LAR+         
Sbjct: 80  EVLELIRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGEA 139

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +          G+   L  +E  +L  LM   G+ + +T+I + ++ 
Sbjct: 140 VALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVWD 199

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LR K+    G   + + R +GY ++
Sbjct: 200 I-NFDCDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 240


>gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
 gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile]
 gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 230

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           + +     +  ++          +
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIM--MPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I IS        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  KATVKIREERNIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVT 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N  +T           + +  ++ ++ GE   +   E +I+E L+ N+G+  +  +I+
Sbjct: 122 LGNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++   +    EN V  HI ++R+K+  N      +     +GY I+ 
Sbjct: 182 EKVWNE-ESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIEK 229


>gi|15610901|ref|NP_218282.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Rv]
 gi|31794935|ref|NP_857428.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis AF2122/97]
 gi|121639679|ref|YP_979903.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663631|ref|YP_001285154.1| DNA-binding response regulator [Mycobacterium tuberculosis H37Ra]
 gi|167970926|ref|ZP_02553203.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215405820|ref|ZP_03418001.1| DNA-binding response regulator [Mycobacterium tuberculosis 02_1987]
 gi|215413693|ref|ZP_03422361.1| DNA-binding response regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425011|ref|ZP_03422930.1| DNA-binding response regulator [Mycobacterium tuberculosis T92]
 gi|215432744|ref|ZP_03430663.1| DNA-binding response regulator [Mycobacterium tuberculosis EAS054]
 gi|215448109|ref|ZP_03434861.1| DNA-binding response regulator [Mycobacterium tuberculosis T85]
 gi|218755548|ref|ZP_03534344.1| DNA-binding response regulator [Mycobacterium tuberculosis GM 1503]
 gi|219559850|ref|ZP_03538926.1| DNA-binding response regulator [Mycobacterium tuberculosis T17]
 gi|224992175|ref|YP_002646864.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254552879|ref|ZP_05143326.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260184688|ref|ZP_05762162.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis CPHL_A]
 gi|260198813|ref|ZP_05766304.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis T46]
 gi|260202968|ref|ZP_05770459.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis K85]
 gi|289441201|ref|ZP_06430945.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T46]
 gi|289445364|ref|ZP_06435108.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CPHL_A]
 gi|289572012|ref|ZP_06452239.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T17]
 gi|289572415|ref|ZP_06452642.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis K85]
 gi|289748284|ref|ZP_06507662.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|289755896|ref|ZP_06515274.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis EAS054]
 gi|289759927|ref|ZP_06519305.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis T85]
 gi|289763947|ref|ZP_06523325.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis GM 1503]
 gi|294995323|ref|ZP_06801014.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis 210]
 gi|297636446|ref|ZP_06954226.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis KZN 4207]
 gi|297733440|ref|ZP_06962558.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis KZN R506]
 gi|298527238|ref|ZP_07014647.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|313660771|ref|ZP_07817651.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis KZN V2475]
 gi|2960189|emb|CAA18087.1| PROBABLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|31620533|emb|CAD95977.1| PUTATIVE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121495327|emb|CAL73814.1| Putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148507783|gb|ABQ75592.1| DNA-binding response regulator [Mycobacterium tuberculosis H37Ra]
 gi|224775290|dbj|BAH28096.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289414120|gb|EFD11360.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T46]
 gi|289418322|gb|EFD15523.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CPHL_A]
 gi|289536846|gb|EFD41424.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis K85]
 gi|289545766|gb|EFD49414.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T17]
 gi|289688871|gb|EFD56300.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|289696483|gb|EFD63912.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis EAS054]
 gi|289711453|gb|EFD75469.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis GM 1503]
 gi|289715491|gb|EFD79503.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis T85]
 gi|298497032|gb|EFI32326.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326905603|gb|EGE52536.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis W-148]
          Length = 234

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G ++                R DV  ++  L    G  VL
Sbjct: 12  LVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDVL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    +  +P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 72  HKLRS--ENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 129

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 130 TTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 190 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 230


>gi|306821334|ref|ZP_07454943.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550621|gb|EFM38603.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 227

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      L  ++  S+    S      + +S       I   L+  G+   
Sbjct: 4   ILIVEDDNNINSLLCELLKNEN-SVTSAFSGTEAMMIFNSDVNKFDLILLDLMLPGKSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++      T +D  + G DD ++KP   RE+ AR  +  R+   
Sbjct: 63  DIIREIRQVSAVPIIVLTAKGDTNTLVDILEMGADDYISKPFDVREVKARAKSHLRKKMD 122

Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   E              R   V      L ++E  +L   +    +   K  +++ +
Sbjct: 123 NHTFQEEVLKFEDLTLNISSRTASVGENPITLTQKEFDMLSLFLHEPKRVFTKEILYTKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      ++N + +HIS+LR K++  +  D +D+   +G+ +
Sbjct: 183 WGDM-YYGDDNTINAHISRLRSKIKEYMQKDIIDTVWGVGFRL 224


>gi|269102741|ref|ZP_06155438.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162639|gb|EEZ41135.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 225

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D  +    + G  ++  +       + +S    +  ++  L       L
Sbjct: 3   ILVIEDDNTTRDFVVQGLIEHGYVVDEASDGHQGLMMATSCEYSLIILDRMLPM--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
           ++   IRA  +  P++ +S   S++  +    +G DD + KP            +   + 
Sbjct: 61  KVLAAIRATENSTPVMILSAMDSVEERVVGLTAGSDDYLIKPFALAELIARAEILIKRHH 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        +++            V  L ++E  +L+YLM +    V++  +F ++
Sbjct: 121 ATTQVATEYVYADLKLDLKSHRVWRGNRVINLQQKEFLLLQYLMGHAESVVSRMSLFESV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + N+++ HI+ LRKKL  +     + + R  GY +
Sbjct: 181 W-NYHFDPKTNIIDVHIANLRKKLDAEGEVSLIHTVRGAGYVL 222


>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 235

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +E   +        +    D   ++  L    E   
Sbjct: 13  ILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLML--PDENGY 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R     VP+I ++        +   ++G DD V KP    E++AR+ AI+RR  
Sbjct: 71  RVCETLRSRDPVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRRQV 130

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     + GP R+ +             L   E  +L+ L       V + +I   I
Sbjct: 131 RLASHEEAFDIGPWRINTRKHTMNQGRSTKRLTFYELEVLKLLRERAESPVTRDEILEKI 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G+         V++ I KLR+KL         + +    GY +
Sbjct: 191 WGVTPSPAN-RTVDNFIVKLRRKLEEDHKRPRHILTVYGHGYKL 233


>gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
          Length = 224

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++          + ++++   + +      +++  DV  ++          +
Sbjct: 3   ILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIM--MPILDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                +R      P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +    R  +  GE   L  +E  +L YL +N    +++ QI   ++ 
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+++ +I  LRKK+        + + R +GY +
Sbjct: 180 EYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVL 220


>gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD A +++         G  +   +S      +   +  D+  ++      GE  L
Sbjct: 7   IAVVDDHADIRNLVGQYLEQQGYRVSVADSGVALRRILERSAVDLVVLDVM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   VP+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 65  SVCRHLRATMDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIRAVLRRANS 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----------PLPRRERRILEYLMANRGKRVAK 170
              +      +                          PL   E R+L   +   G  +++
Sbjct: 125 VPQQQRETLKKAKVVRVGHWRVNMGRQELSGDDGVGIPLSTAEFRLLRVFLERPGLVLSR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+     G     + +  +++ +S+LRKK+  +      + +    GYS+
Sbjct: 185 EQLLDLTVGKT-ADIFDRSIDNQVSRLRKKIEPDPKNPSVIKTHWGGGYSL 234


>gi|209518065|ref|ZP_03266895.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501471|gb|EEA01497.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 232

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 79/226 (34%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +          DG +       +       +    +  ++  L   G   +
Sbjct: 9   ILIVEDQPKLSAVLEDYLHLDGFTTTVIADGQAVMPFIRATPPSLMLLDLML--PGRNGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTT-----LDFFDSGVDDVVNKPIHHREILARVAAIY 116
           ++ R +R  S +P+I ++             +   D        + +  R       A  
Sbjct: 67  DICRELRQFSALPVIILTARIDEIDRLLGLEIGADDYVCKPYSPREVVARVKAILRRAAP 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     + V        + G+   L   E R+L  LM + G+   +  +   
Sbjct: 127 AVASQPGAQQAPHGLEVDEQFHRTLLDGKELKLTPLELRLLVLLMKSPGRIFPREYLLDN 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +Y      V +  ++SHI  LR+KL+  +   +P+ S   +GY ++
Sbjct: 187 LYDDH-RVVTDRTIDSHIKNLRRKLQTVRPDSEPIVSVYGVGYRLE 231


>gi|148271879|ref|YP_001221440.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829809|emb|CAN00728.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++   ++    +   + G  S    E        D+  ++  L G     ++
Sbjct: 8   LVVEDDAAIRAAVVSTLTAERFVVRGLASGVDLEEEVKGFLPDLVVLDWMLPGP--SGIQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S   +I ++   +++  L  F  GVDD + KP    E++ARV A+ RR    
Sbjct: 66  LAERIRRWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVLRRRGRL 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E G + V  D       GE   L   E ++L YL A+RG+ ++KTQ+ + ++G   
Sbjct: 126 ASVVEIGDLLVDPDSGLARRGGEQLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVWGYDQ 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + N+VE HIS LRKK+  + G   + + R LGY ++
Sbjct: 186 --TDPNLVEVHISALRKKMEAR-GPRLLHTVRGLGYRVE 221


>gi|239989346|ref|ZP_04710010.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 256

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  ++             +   D+  ++  L       + 
Sbjct: 28  LVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPA--LDGIG 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------------- 108
           L   IR  S VP++ +S        +   ++G DD V KP+    +              
Sbjct: 86  LCHRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRRATFG 145

Query: 109 -LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                     R +  ++    G + V + G +    G    L   E R+L    A  G  
Sbjct: 146 PDGPAPEKSGRDRAPDHILTFGDLTVDTLGMEVRRAGVTVSLTPTELRLLLEFAAAPGSV 205

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++   ++  +    +  VV+  + +LRKK+    G   +++ R  GY +
Sbjct: 206 LDRRRLLRDVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 253


>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVML--PGIDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 65  EVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|87199616|ref|YP_496873.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135297|gb|ABD26039.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 228

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A      +    ++G  ++         ++ +        ++  L   G   +
Sbjct: 5   ILLVEDDADTAAFIVGGLAEEGFVVDRARDGREGLFMGTDHTYQCIVLDRML--PGLDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            +   +R A    P+I +S   + +  +     G DD + KP    E    +  +     
Sbjct: 63  AVLAALRGAGVHTPVIILSALGATEDRITGLTRGADDYLAKPFAFAELLARIRLLVRRGS 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   G + +    R          L  RE R+LE+L+ +  + V +T +   +
Sbjct: 123 GAPTEQTKLSCGDLEMDLLSRRVRRGARAIDLQPREFRLLEFLLRHADQVVTRTMLLEGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NV++ HIS+LRKK+        + + R  GY I
Sbjct: 183 WD-YHFDPGTNVIDVHISRLRKKIDEGEVVALLHTVRGAGYRI 224


>gi|328885593|emb|CCA58832.1| DNA-binding response regulator KdpE [Streptomyces venezuelae ATCC
           10712]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L +    DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDAAPDGATALRLAAERHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIKGLRGWTRVPILVLSARQTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     ET    V    +     G    L   E  +LE L+ N G+ V++ Q+   
Sbjct: 123 GGAEDGVVVVETEGFTVDLAAKKVHRDGRDVRLTPTEWHLLEVLVRNGGRLVSQKQLLQE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 VWGPS-YGTETNYLRVYMAQLRRKLESDPSHPRHFVTEPGMGYRFE 227


>gi|295428068|ref|ZP_06820700.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128426|gb|EFG58060.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|323439506|gb|EGA97227.1| respiratory response protein, SrrA [Staphylococcus aureus O11]
 gi|323441526|gb|EGA99177.1| respiratory response protein, SrrA [Staphylococcus aureus O46]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 78/217 (35%), Gaps = 14/217 (6%)

Query: 17  ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76
                +   +   ++ +    L          ++  L       +++   +R H Q P+I
Sbjct: 1   MYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGIQVATKLREHKQTPII 58

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVAAIYRRLKVSNNRAE 127
            ++        ++ F+SG DD + KP   RE            +   + +    + +  E
Sbjct: 59  MLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIE 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + + +D        +   L  +E  +L YL     K   + Q+   ++  ++   + 
Sbjct: 119 FKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVW-HYEFYGDL 177

Query: 188 NVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
             V++H+ +LR+KL          + +   +GY  + 
Sbjct: 178 RTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 214


>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|229192651|ref|ZP_04319610.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590741|gb|EEK48601.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V++ ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVSREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|298346496|ref|YP_003719183.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|298236557|gb|ADI67689.1| response regulator [Mobiluncus curtisii ATCC 43063]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF          +    ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYREFREAMTELLPEMILLDIML--PGVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---- 113
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E+++RV     
Sbjct: 59  IQILRRIRANPETEGIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRVRAVLR 118

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G I +        V G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARPADSTVGDEEILTIGSIDLNLPRHTVAVAGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 NRLLDSIWG-YSFHGGTRTVDVHIRTLRKKLG--PAAKHIETVRGVGYKI 225


>gi|162451560|ref|YP_001613927.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161162142|emb|CAN93447.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 256

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 83/222 (37%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G  +     L       +    D+  ++  L       L
Sbjct: 36  ILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRAL--PDGDGL 93

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R      P I ++    +   ++    G DD + KP    E+     A   R  
Sbjct: 94  DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEEL-LARIAAVSRRA 152

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R E   + +       E  G    L  +E  +L  L  + G+ +++T++   ++ +
Sbjct: 153 GRSERVEVADLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWDV 212

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                  NVV+  IS LR K+        + + R +GY ++ 
Sbjct: 213 GH-DPGTNVVDVAISALRAKVDRGFARPLIHTVRGVGYVLEE 253


>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
 gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
          Length = 250

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 8/211 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           +G  D   +   ++ H+ +LR K+       
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPANP 215


>gi|163942188|ref|YP_001647072.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229013655|ref|ZP_04170784.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135265|ref|ZP_04264061.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163864385|gb|ABY45444.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228648190|gb|EEL04229.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747577|gb|EEL97451.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAEILEEHLERYGYQSFRVSDLRHIKDEFVKVSPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L   ++      + +F      E +G+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYALAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|284046586|ref|YP_003396926.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950807|gb|ADB53551.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 10/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D   +++    +    G  +      +       +    V+ ++  L       + 
Sbjct: 9   LFVEDDPTIRETTALVLETFGFEVRVTADGQAGLDAFRAEPFHVALLDVML--PRIDGIS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L R+IR  S +P++ +S        +   ++G DD V KP     + AR+        R 
Sbjct: 67  LVRMIRETSPIPVVLLSARSEPLDVVAGLEAGADDYVAKPFDGPVLAARLRAVLRRAERQ 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + + + G    + G    L   E R+L  L  N G  +++  +   ++ 
Sbjct: 127 ADERRVVTIGDLELDAAGMSARIAGRPVSLTTTEARLLIELAQNAGVVLSRAVLLERVW- 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +  +V+ HI +LR K+    G + +++ R  GY +
Sbjct: 186 EHAWDGDTRLVDVHIQRLRAKI----GRERIETVRGAGYKL 222


>gi|229546063|ref|ZP_04434788.1| response regulator [Enterococcus faecalis TX1322]
 gi|256852903|ref|ZP_05558273.1| response regulator [Enterococcus faecalis T8]
 gi|229308836|gb|EEN74823.1| response regulator [Enterococcus faecalis TX1322]
 gi|256711362|gb|EEU26400.1| response regulator [Enterococcus faecalis T8]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F ++G      +  +     +L SS + D+  ++  L      
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASSEKWDMITLDLNL--PSMD 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRG 165
            +V+    +T      +     +                       +E  +L  L     
Sbjct: 121 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 QVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|228923193|ref|ZP_04086483.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836399|gb|EEM81750.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 248

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 17  ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 75  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 134

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 135 EYASAAENDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 195 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 242


>gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72]
 gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   +                 D + +   +    +   
Sbjct: 5   ILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGA-DYALVILDVGLPDQSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113
           ++ R +R  S VP+I ++        +   + G DD V KP   RE+             
Sbjct: 64  DVCRALRRESDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILRRARP 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                         + P    + G      G    L R E R+L  L+   G+  ++ Q+
Sbjct: 124 QPAAVAPAPAAETCSAPFHHDAAGARIAYHGVWLSLTRYEYRLLATLLDRPGRVQSRAQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + ++    E   E  V++HI  LR KLR  +   DP+++ R LGYS+
Sbjct: 184 MADVW-RDAEDSLERTVDAHIKTLRAKLRAVREDEDPIETHRGLGYSL 230


>gi|296117303|ref|ZP_06835893.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976069|gb|EFG82857.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        + + +      +      +     +  ++  L   GE  L
Sbjct: 7   ILIVDDDREIRELLARFLERNELRVTTARDGQETRRKWTGGHYQLVILDLML--PGESGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  + VP+I ++        +   + G DD V KP + RE+LARV A+ RR+  
Sbjct: 65  DVARWLRTQADVPIIMLTAMSDDTDRIIGLELGADDYVPKPFNPRELLARVRAVLRRVND 124

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +       R+                   G   PL   E  +L  L+    + + +  
Sbjct: 125 NPDPRSVPARRLMRFAGWELDTVRRRLLNPTGTEVPLTGGEYDLLLALLERANRVLTRDM 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +F  + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 185 LFDMLRGRQAGPFD-RAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232


>gi|288957299|ref|YP_003447640.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288909607|dbj|BAI71096.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +++   +    +G  +                  D+   +  L       L
Sbjct: 3   ILAVDDDEPIRELLASYLAGEGYRVTTAPDTASARQALDGEPVDLVVCDLRL--PDGDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  SQ+P+I +S        +   + G DD + KP + RE+LAR+ A+ RR+  
Sbjct: 61  GLVRQIRTESQIPVIILSSKDQDVDRIVGLELGADDYLTKPFNPRELLARIKAVLRRVSN 120

Query: 122 SNNRAETGPIRVFSDGRDPE-----------VQGEVFPLPRRERRILEYLMANRGKRVAK 170
               A                           +G    L + E  +L   +    + + +
Sbjct: 121 DARPARNPEELRAVVQFANWELDLTAQRLRGQEGREVELTKAEFGLLAAFVKRPQRVLTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+      +    V +  ++  I +LR+K+  N      + ++R  GY  D
Sbjct: 181 DQLLDLTR-VDGAEVFDRSIDVLILRLRRKIEANPKEPRIIKTERGAGYVFD 231


>gi|149919663|ref|ZP_01908141.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149819434|gb|EDM78864.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D         G  +    S E  E   +  R D+  ++  L G     L
Sbjct: 6   ILLVEDDQRLADLVAGFLARHGFRVRAVASAEAAEQQFARLRPDLCILDIHLDGP-VDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA    PL+ ++     +  L    +G DD   +     EIL        R   
Sbjct: 65  SLCRGLRARFDGPLLFLTARVEDEDELASLAAGADDF-LRKPVKPEILLARLRALLRRAG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E G +R+    R+   +G+V  L   E  +L +L    G+ V++ ++   + G+ 
Sbjct: 124 PRARVEVGALRIDPRAREVRARGQVLALTDAEFDLLCFLATRAGRVVSREELVWGLRGIP 183

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                +  ++  +SKLR+KL         + S R  GY +
Sbjct: 184 -YDGLDRSMDVRVSKLRRKLSGPGANAATIKSVRGAGYLL 222


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 24  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML--PDIDGF 81

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 82  TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 141

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 142 EQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLG------FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+     +            +++KR +GY I
Sbjct: 202 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 253


>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E  PL   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D           +++  ++ E  +   +    D++ ++  L       L
Sbjct: 3   ILLVEDDKVLADALSRALVQSAHAVDIVSTGEEADHALALGIYDLAILDIGL--PKLSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA  S +P++ ++ + +LQ  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRST 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S    E G +R  + GR      +   L  RE  +LE LM   G+ V K Q+ + +YG 
Sbjct: 121 NSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYGW 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE  + N +E ++ +LRKKL        + + R +GY +D
Sbjct: 181 GDEVGD-NAIEVNVYRLRKKLEPLGCE--IRTVRGMGYLMD 218


>gi|169343028|ref|ZP_02864056.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298937|gb|EDS81011.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++   ++      +       ++ ++            
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIM--MPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LSMVKKDEKKTNSYVIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|239942886|ref|ZP_04694823.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 256

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  ++             +   D+  ++  L       + 
Sbjct: 28  LVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPA--LDGIG 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------------- 108
           L   IR  S VP++ +S        +   ++G DD V KP+    +              
Sbjct: 86  LCHRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRRTTFG 145

Query: 109 -LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                     R +  ++    G + V + G +    G    L   E R+L    A  G  
Sbjct: 146 PDGPAPEKSGRDRAPDHILTFGDLTVDTLGMEVRRAGVTVSLTPTELRLLLEFAAAPGSV 205

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++   ++  +    +  VV+  + +LRKK+    G   +++ R  GY +
Sbjct: 206 LDRRRLLRDVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 253


>gi|269839100|ref|YP_003323792.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790830|gb|ACZ42970.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +     ++  + G ++   +S E    L      D   ++  L   G   LE
Sbjct: 11  LVIDDEHEILRILKSVLTNAGYAVSVASSGEEGMELFGLQPFDAVLLD--LRMPGLSGLE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRRL 119
           +   +RA S VP+I +S        +   D+G DD + KP         L          
Sbjct: 69  VCAWLRARSDVPIIVLSVMGEENDKVRALDTGADDYLVKPFGVAELLARLRAALRRAGSK 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G + +  + R   V G++  L   E  +L+ L  + GK V    +   ++G
Sbjct: 129 GQPEMIVRSGDLTIDLERRAVYVAGQLVRLTPTEYDVLKCLAVHGGKVVTHRMLLREVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++  + + +   I+++R+KL +       + ++  +GY +
Sbjct: 189 -SEQPADTSNLRYTITQIRRKLGDDPTHPRYILTEPGVGYRL 229


>gi|149917429|ref|ZP_01905927.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1]
 gi|149821766|gb|EDM81162.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++  + AL       L    +      L SS R D+  ++  L       L
Sbjct: 9   ILVAEDEPQMRRFFRALIRSHDYRLLEAGTGREALALASSHRPDLLILDLGL--PDRDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +RA + +P+I +S   S    +   D G DD + KP    E+LARV    R+   
Sbjct: 67  ELLVELRAWTSMPIIVVSARGSELDKVRALDLGADDYLTKPFGSHELLARVRVALRQAAR 126

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +E          V    R  E+ G+   L   E ++L  ++A+ GK +   Q+ S 
Sbjct: 127 VGAGSEQPLFEVGELSVDLARRKVELGGQAVRLTPTEYKLLSTMIAHAGKVLTHRQLLSE 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G    A     +  ++++LR+KL         + ++  +GY ++
Sbjct: 187 VWGPAQ-ASNTQYLRVYMAQLRRKLEADPARPSLLKTEIGVGYRLE 231


>gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ +G        G  ++ F   +       SA  D   ++  L       L
Sbjct: 3   ILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTL--PKMDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++  R  +    VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 61  DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E   +    + R   ++ E   L  RE ++LE  M N+ + +++  I   +Y 
Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 NWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++         G+   G                D+  ++          L
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGRRAPDLVVLDIG--MPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP++ +S        +   + G DD V KP   RE++ARV  I RR + 
Sbjct: 63  EVCRRLRHTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRARP 122

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   A                       G    L   E  IL+  +A     + +  + +
Sbjct: 123 AAPEAADDRQFSHGKLTLAPASHAAAFDGTPLALTGIEFSILKGFLARPAHVLDRDAVMA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             Y      V +  V+SHI  +R KL      D +++   +G+ +
Sbjct: 183 NAY-AGKIHVADRTVDSHIRNIRAKLAAVGCVDAIETVHGVGFRL 226


>gi|328479685|gb|EGF48847.1| OmpR family DNA-binding response regulator [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ +
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 121

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                      +           R      ++  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           S ++G ++  VE NVV+ ++  +R K+        + + R  GY 
Sbjct: 182 SKVWG-YNSDVETNVVDVYVRYIRNKIDRPGEPSYIQTVRGTGYV 225


>gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVM--MPSMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|255281501|ref|ZP_05346056.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267989|gb|EET61194.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +     ++   +G+      S             D+  ++  L   G    
Sbjct: 4   ILISEDDADINHLIRSICEKNGLQTAQAFSGTEALLRLELESFDMIILDLML--PGMTGE 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL + IRA     +P++ +S   SL   +     G DD + KP    E+LAR+ A  RR 
Sbjct: 62  ELLKRIRAEKQPDIPVLVLSAKSSLADKVQLLTGGADDYMTKPFEPEELLARITACLRRA 121

Query: 120 KVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      + +    R   V G+   L   E  IL  L     K  ++  +
Sbjct: 122 QRMPAAKPAADDISYKKLCICPAARRATVNGQELVLTPHEYDILLLLARELEKVFSRETL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  ++       E+N V  H+S LRKK+       + + +   +G+ +
Sbjct: 182 YERVW-QGGYYGEDNTVNVHVSNLRKKIAACDADNEYIKTVWGIGFKM 228


>gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  IILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|206969522|ref|ZP_03230476.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735210|gb|EDZ52378.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALFTEW 229


>gi|77464845|ref|YP_354349.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389263|gb|ABA80448.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    S+       +     +  ++  L       +
Sbjct: 7   ILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGL--PDGDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQVP+I +S        +   D+G  D V KP    E     R     R  
Sbjct: 65  EVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+G
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVSGTEVKLTRREFDLLRLLASQAGRLVTQAMILRTIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              E  +   +  +I +LR KL +       + ++  +GY  
Sbjct: 185 PAHEE-DSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRF 225


>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
 gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+ S  +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +   +      + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRR-MGEEDPAHPRYIQTVWGLGYVF 232


>gi|296102592|ref|YP_003612738.1| DNA-binding response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057051|gb|ADF61789.1| DNA-binding response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A       A    +   +           +    + D+  ++  L   G    E
Sbjct: 7   LIIEDDADAAGVLEAYLRRENYDVNVTGDGLAGLEMAQRWKPDLVLLDVML--PGLNGTE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R  S VP+I ++        +     G DD V KP H  E++ARV A+ RR   +
Sbjct: 65  VLASLRRKSDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSNKN 124

Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E    +              + +    V  L   E  +L  LM +  +  ++  + 
Sbjct: 125 TREEEILRWQTLEVDVTAIVASIINDDNTPRVLDLTPTEFSLLTTLMRSPSRPFSRQYLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                L +    E VV++HI  LRKKL        + + R +GY  
Sbjct: 185 EHC--LPESEALERVVDTHIYNLRKKLEAAGLSGVLVNVRGVGYRF 228


>gi|268608799|ref|ZP_06142526.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +      +   +G S +          L  +   D+  ++  L        
Sbjct: 5   IAIIEDDKDISSILANILKKNGYSYKQAYDGSQAMKLLKNESFDIVLMDLML--PYVNGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R  S  P+I IS    ++T L+    G DD + KP    E++ R+  + RR++ 
Sbjct: 63  TLIYELRKISDTPVIVISAKSMMETKLEVLRLGADDYIIKPFDINEVIVRIEVVLRRVQT 122

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +        ++       E +G+   L  +E  +LE  M N  K   K +++ +++ 
Sbjct: 123 TKEKDVLESGGLKLILTENRAEYEGKPVQLTAKEMSLLELFMKNPKKTYTKAELYESVWN 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 E+N +  H+S LR KL+   G + +++   +GY +
Sbjct: 183 DV-YYYEDNTINVHVSNLRNKLKKVSGREHIETVWGIGYRL 222


>gi|251778829|ref|ZP_04821749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083144|gb|EES49034.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +           L  S   D+  ++  L    +   
Sbjct: 3   ILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLML--PDKDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREI 108
           E+    +  +S+VP+I +S    L   L     G DD + KP               R  
Sbjct: 61  EVIHEFQGINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+          +N+  E G I++    R   +  +       E  I+  ++ N  K  
Sbjct: 121 KAKAIGKNEVKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + ++   I+G +        V+ HI ++R+KL      D + +   +GY ++ 
Sbjct: 181 TREELLDKIWG-YSFVGNTRAVDIHIKRIRQKL--IGNEDVIKTIYGVGYRLEV 231


>gi|254509773|ref|ZP_05121840.1| DNA-binding response regulator ChvI [Rhodobacteraceae bacterium
           KLH11]
 gi|221533484|gb|EEE36472.1| DNA-binding response regulator ChvI [Rhodobacteraceae bacterium
           KLH11]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 7   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 65  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 124

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               E G +R+         +G    L   E  +L+ L    G   ++
Sbjct: 125 TEGDVANVATGDAKVMERGELRMDPLRHAVSWKGNDVSLTVTEFLLLQALAQRPGFVKSR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 185 DQLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRAADPEFSAIETLYGIGYRYNE 236


>gi|56695613|ref|YP_165964.1| DNA-binding response regulator ChvI [Ruegeria pomeroyi DSS-3]
 gi|56677350|gb|AAV94016.1| DNA-binding response regulator ChvI [Ruegeria pomeroyi DSS-3]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +R+         +G    L   E  +L+ L    G   ++
Sbjct: 122 VAGDAAGTTTGETKVMERGHLRMDPLRHAVSWKGVDVSLTVTEFLLLQALAQRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 DQLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADPDFAAIETLYGIGYRYNE 233


>gi|325283532|ref|YP_004256073.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315341|gb|ADY26456.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G  ++  +              D+  ++  L        
Sbjct: 6   ILIIEDDLDIANVLKLDLTDAGYEVDHADVAMTGLIKAREDNPDLIILDLGL--PDFDGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD + KP H  E+        +  + 
Sbjct: 64  DVVQRLRKNSAVPIIVLTARDTVDEKVRLLGLGADDYIIKPFHPDEL--LARVKVQLRQR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R    +GE   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 122 VTESLSMGDLTLDPQKRLATYKGEELRLSPKEFDILSLLIRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  L        
Sbjct: 3   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVML--PEMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|222097886|ref|YP_002531943.1| response regulator [Bacillus cereus Q1]
 gi|228987692|ref|ZP_04147803.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158056|ref|ZP_04286126.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|221241944|gb|ACM14654.1| response regulator [Bacillus cereus Q1]
 gi|228625375|gb|EEK82132.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228771966|gb|EEM20421.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKEEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRNVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D     F   G  +   +       L ++ R D++ ++  L       L+
Sbjct: 34  LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGTAGRPDLAILDVML--PDMDGLD 91

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +   +RA  S++P + ++   + +  +    +G DD V KP    E      R+      
Sbjct: 92  VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + + +   +    G+   L   +  +L++LMAN    ++K +I   ++
Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+VE +IS LRKK+        + + R  GY I
Sbjct: 212 G-YDFGGRANIVELYISYLRKKIDADRDP-MIHTIRGAGYVI 251


>gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 249

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G   +  +       L      DV  ++  L       L
Sbjct: 21  LLIIEDDREAAAYLVKAFRETGHVADSAHDGLDGYALAREGDYDVLIVDRML--PKLDGL 78

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
            L R +R  +   P + +S    +   +    +G DD + KP           A      
Sbjct: 79  SLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALARRQA 138

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R   G + +          G   PL  RE R+LEYLM + G+ V +T +   
Sbjct: 139 GSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTMLLEH 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    + NV++ H+S+LR KL        + + R  GY +
Sbjct: 199 VWD-YHFDPQTNVIDVHVSRLRSKLDKGFPSPIIHTVRGAGYVL 241


>gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus]
 gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus]
 gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
 gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus]
 gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus]
 gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G       S +    L  +    +  ++           
Sbjct: 4   ILLVDDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIM--MPEMNGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  S VP+I ++     Q  +     G DD V KP H  E+         R   
Sbjct: 62  ETCNKIREFSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEEL-LARIEAVLRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++ E   +          + G        E  +L   + N      + Q+   I+G  
Sbjct: 121 RHHKIEYKGLIWDEARHTAAMNGNELLFTPIEFSLLGLFLNNLNYVFTREQLIERIWG-H 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
               E+  V+SHI  LR+KLR       + + +   +GY 
Sbjct: 180 ASETEDRTVDSHIRNLREKLRKASFPINEHLKTIYGIGYR 219


>gi|81428827|ref|YP_395827.1| two component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104608|gb|AAD10267.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78610469|emb|CAI55519.1| Two component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 246

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 87/239 (36%), Gaps = 21/239 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +                 S   +    I   L   G   +
Sbjct: 3   ILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + IR  S+ VP+I ++   S    +   + G DD V KP     ++AR+ A++RR  
Sbjct: 63  QVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122

Query: 119 ----------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                                +                 +   +  L  +E  +L+ L  
Sbjct: 123 LVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLAK 182

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N  +  ++ Q+   ++  +    +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 183 NPRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIEE-VGPQVIQTVWGVGYKFD 239


>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 263

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G  ++   +      L      D   I+  L       LE
Sbjct: 35  LVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVIL--PVMDGLE 92

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119
           + + +R      P++ +S   S+   +   + G DD + KP    E+LARV       ++
Sbjct: 93  ILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSKV 152

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                + + G + +    R      E F L  +E  +LEYLM N+G+ V + +I   ++G
Sbjct: 153 NQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVWG 212

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NVVE HI +LR+KL        + + R  GY++
Sbjct: 213 -YNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252


>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 92/239 (38%), Gaps = 22/239 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + D        +G +       E    + +     +  ++       +   E
Sbjct: 1   MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMFNEYSPLLILLDVM--MPKKDGFE 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   D G DD + KP    E++AR+ A+ RR+ +S
Sbjct: 59  VCQEIRKTSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRIDIS 118

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +               + ++ G+   L ++E  I   L +N GK  ++  + ++++
Sbjct: 119 EEDKKDIIRFPGLEINISDYEVKINGQEVNLTKKEIEIFWLLASNPGKVFSRDNLLNSVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP---------------VDSKRFLGYSIDW 222
           G ++   +   V++HI +LR K+                       + +   +GY  + 
Sbjct: 179 G-YEYFGDARTVDTHIKRLRAKVDIPGSMASSESKSTNQPESFIWDIKTIWGVGYKFEV 236


>gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++             L+  ++ E      S+   D+  ++           
Sbjct: 5   ILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISADFYDLILLDIM--MPEVDGF 62

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIY 116
           EL + +R H  ++ P+I ++     +  ++    G DD + KP   +E    +  V    
Sbjct: 63  ELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIRRT 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  K          +       +     ++ PL ++E +I   L +NRGK  ++  +   
Sbjct: 123 KNYKSKVESFIVKDLVFQPSNYNISFNNKILPLTKKEFQIFYRLASNRGKVYSRDHLLEL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            +G+ +   +   V++H+  +R+KL+     D  +++   +GY 
Sbjct: 183 EWGM-EYEGDNRTVDTHVKNIREKLKAVGYTDAIIETVWGIGYK 225


>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
 gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +  +++ +P++ ++        +   + G DD + KP + RE        +  +V 
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +  +  F + G ++E          L +S + D+  ++  L       L
Sbjct: 3   ILMVEDDATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     +  +    +V  +   +    +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+++    S +  E L+   +ED+  +   ++      + 
Sbjct: 9   LVVDDEKEIRDAIDIYLRGEGINVI--KSGDGFEALEILDKEDIHLVVLDIMMPKLDGMR 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD V KP +H E++ARV +  RR    
Sbjct: 67  TCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 123 NNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            NR  T  +       + +  +   ++GE   L   E +IL  L ++ G+  +  +I+  
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  HI ++R+K+  N    + +     LGY ID 
Sbjct: 187 VWEEP-FYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKIDK 232


>gi|70730075|ref|YP_259814.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344374|gb|AAY91980.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+++   A    +G  +    + E  E        D+  ++  L   G+  L 
Sbjct: 6   LIVDDDPLIRELLQAYLSQEGYDVHCAATAEQAESFLGQHTVDLLMLDIRL--PGKDGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S+V +I I+        +   + G DD V KP++ RE+++R   + RR++ +
Sbjct: 64  LTRELRVRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRQA 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVAKT 171
           +                                    L   E ++L   + N G  +++ 
Sbjct: 124 SPPQAPANSPSPVKQFADWALDTDRRRLIDPRGAETLLTHGEYQLLSVFLRNSGHTLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   I    +    +  ++  + +LR+KL  +    + + +    GY  
Sbjct: 184 QLMDQIRNR-EWVPSDRSIDVLVGRLRRKLHDDPAEPELIITIHGAGYLF 232


>gi|169795908|ref|YP_001713701.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|213157394|ref|YP_002319439.1| AdeR [Acinetobacter baumannii AB0057]
 gi|301344928|ref|ZP_07225669.1| AdeR [Acinetobacter baumannii AB056]
 gi|301509916|ref|ZP_07235153.1| AdeR [Acinetobacter baumannii AB058]
 gi|301595364|ref|ZP_07240372.1| AdeR [Acinetobacter baumannii AB059]
 gi|332854443|ref|ZP_08435375.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332868449|ref|ZP_08438162.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|88758852|emb|CAJ77842.1| AdeR [Acinetobacter baumannii AYE]
 gi|169148835|emb|CAM86704.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|193077374|gb|ABO12180.2| AdeR [Acinetobacter baumannii ATCC 17978]
 gi|213056554|gb|ACJ41456.1| AdeR [Acinetobacter baumannii AB0057]
 gi|306485917|gb|ADM92605.1| AdeR [Acinetobacter baumannii]
 gi|332728019|gb|EGJ59411.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332733374|gb|EGJ64560.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 247

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++      E    +       V  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLRQEGYNVLKAYDGEEALKVLKREE-KVDLLVIDVMMPRLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 63  RATLKIREENSLPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTK 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N     G + +  D ++  V GE   L   E  IL  LM N+GK  +  QI
Sbjct: 123 LGSTVVQNNNTVYTVGGLSIDDDLKEVTVDGEPVKLTPIEYNILLLLMKNQGKVFSIDQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + +I+   D    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 183 YESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 231


>gi|294012529|ref|YP_003545989.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
 gi|292675859|dbj|BAI97377.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   ++   + L   +G    G  +    + L    R D++ ++  L   GE   
Sbjct: 6   IAVVEDDREIRALVVDLLNREGFEAVGCRTTLEFDQLNQRRRIDLAVLDVML--PGEDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA   +P++ ++        +   + G DD + KP + RE++ARV AI RR + 
Sbjct: 64  SLCRRLRAAGDIPVLMVTAKADDVDRIVGLEIGADDYLPKPFNPRELVARVRAILRRTRG 123

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  +       +  G              +GE   L   E  +L   + +  + + + Q
Sbjct: 124 QHRISPALANERYGFGGWTLDLGARSVVGPEGEEVELTAGEFDLLHCFVTHPQRVLNRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +     G      +   ++  +S+LR+KL +   G   + + R  GY  
Sbjct: 184 LLDWTRGRSAGPFD-RAIDVQLSRLRRKLAQAPGGDTVIKTVRGGGYQF 231


>gi|271964343|ref|YP_003338539.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507518|gb|ACZ85796.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V+        + G ++   ++         + R D+  ++  L        
Sbjct: 4   LLLVEDDAQVRSALTRALTERGHAVASASAGMPGLTRAVADRPDLVVLDLGL--PDLDGC 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R++RA S VP+I  +        +   D+G DD V KP     + AR+ A+ RR + 
Sbjct: 62  EVLRMLRAVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++       +                       +E  +L YL    G+ V+K ++ + ++
Sbjct: 122 ADEGTAPVVVGGLHIEPAAREATLDGTPLGLTPKEFDLLHYLAVRPGQVVSKRELLTEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                   +  V+ H+S LR+KL         + +   +G  +
Sbjct: 182 -RMAYGGADKTVDVHLSWLRRKLGESAQRPHYLQTVHGVGVKL 223


>gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202]
 gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202]
          Length = 243

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+ +    + +    + ++   D+  ++          
Sbjct: 14  LILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHATQPIDLVILDI--KMPELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +  P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAATPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +        I    +         ++         L   E +IL  ++ +  K   +++
Sbjct: 132 QNQQTPNRNLIYKNIEVNTEIHTAYIYSDDKQQALNLTLTEYKILLLMLPHPHKVFTRSE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +    L D    E  V+SH+SKLRKK+ +    + + + R +GY +
Sbjct: 192 LMNQC--LPDRDALERTVDSHVSKLRKKIEDLGLHNMLINVRGVGYRL 237


>gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A+++DG        G + +   + E      ++   D   ++  L       L+
Sbjct: 4   LIVEDDAVLRDGLTVGLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLML--PDGSGLD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VLKSLRERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRALVRRAAG 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +R+    ++ E QGE   L RRE  IL  LM + G+ ++++QI   +YG 
Sbjct: 122 RPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQIEEKLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E VE N VE HI  LR KL    G   + + R +GY +
Sbjct: 181 WQEEVESNAVEVHIHHLRGKL----GPGMIQTVRGIGYRL 216


>gi|90423350|ref|YP_531720.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105364|gb|ABD87401.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D     D  +  F + G   +     E    L  S   DV  I+  L    G  V
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHVADHAADGEEGLALADSGDYDVLVIDRMLPKRDGLSV 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R     ++ P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 78  IGTLR--DNGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +  D     V      L    RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYKVGDLELDRLSHRVARGDEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMI 236


>gi|302873353|ref|YP_003841986.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688477|ref|ZP_07630923.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576210|gb|ADL50222.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 214

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G   +     +      +    D+  ++  L   G    
Sbjct: 4   ILIVEDDISINELMKRNLSLIGHECKSIFDGQVALTAITQENFDLIILDVML--PGCSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I+A   +P++ ++   SLQ  L    SG +D + KP    E++ARV  I RR   
Sbjct: 62  EIVKHIKA---IPVMFVTAKDSLQDKLQGLSSGAEDYLVKPFEILELIARVNIILRRNNK 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++         F              +  +E  +LE L+ NR   +++ ++    +G F
Sbjct: 119 NDDFILGLVRVNFKCR-KVFFNDIEIEMTPQEYMLLEVLITNRNIAMSREKLLELAWG-F 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   V+ HI KLRKKL      + + +   LGY ++
Sbjct: 177 DYEGDTRTVDVHIQKLRKKL---SLEEQIKTVYKLGYRLE 213


>gi|13471380|ref|NP_102946.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14022122|dbj|BAB48732.1| probable two-component response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 255

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G+ +E   +         + + D+  ++  L   GE  L
Sbjct: 25  ILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIML--PGENGL 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RAH+ VP++ ++        +   + G DD V KP   RE+ AR+ A+ RR   
Sbjct: 83  SICRRLRAHTNVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAY 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174
           + +  +   +  F+  R   V+ ++             E  +L     N G+ +++ ++ 
Sbjct: 143 APDERDRTKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNAGRVLSREELL 202

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++         E  V+ H+S++R+K+  +      + + R  GY  
Sbjct: 203 -SVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLKTVRLGGYIF 248


>gi|88860719|ref|ZP_01135356.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
 gi|88817314|gb|EAR27132.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     DG  +   +          + + D   ++  L    +  L 
Sbjct: 6   LVVEDEVKIAQILVDFLTLDGFEVTTIHDGADAVLQIKNQQPDFVILDLML--PNKDGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP++ ++        L   + G DD V KP   RE++ARV  I RR  V 
Sbjct: 64  ICKEVRQFSNVPILMLTARVDEIDRLMGLEFGADDYVCKPFLPREVVARVKTILRRTAVI 123

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A    +  +            ++ G    L   E R+L  L+   G   ++  +   
Sbjct: 124 PATANDEEVTKYKVILLNLSRFQCQIAGVEVELTPVEFRLLNTLITRPGIVHSRDSLMQV 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Y L D  V    ++SHI  LR KL  +     + S   +GY I+
Sbjct: 184 CY-LDDRIVSARTIDSHIKNLRNKLSQQGQEALLHSIYGIGYKIE 227


>gi|304322337|ref|YP_003855980.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303301239|gb|ADM10838.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D              +G +++   +     +  + +  D+  ++  L   G   +
Sbjct: 4   ILVIEDDEETASFIANGLKQEGFAVDTAKTGTDGLFQATESPPDLVVVDRML--PGLDGV 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA   ++P++ ++   +++  +   ++G DD + KP    E+ ARV  + RR  
Sbjct: 62  SVIKALRAAGVKIPVLFLTAMGAVEDRVAGLEAGGDDYLVKPFSFMELRARVTTLLRRPP 121

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +           V    R      +   L  RE ++LEYL+ ++ + V +T +   I+
Sbjct: 122 LKDEITRLEARGVTVDRLTRRVTAGSQTVDLQPREYQLLEYLLLHKDQIVTRTMLLEEIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F      N+VE+H+S+LR KL        + + R  GY ID
Sbjct: 182 S-FHFDPGTNIVETHLSRLRAKLSEAGTSALIRTVRGAGYVID 223


>gi|332071275|gb|EGI81770.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 217

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  ++++G  A   ++G  +      +            +  ++       +   
Sbjct: 3   ILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMVLDLM--MPRKSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I     +P+I +S      T    FD   DD V KP     ++ R+ A+ RR  V
Sbjct: 61  EVLKEINQKHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSLVLLVKRIKALIRRYYV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V         + E   L  +E  +L+ L+ ++ + +++ QI   I    
Sbjct: 121 IEDLWRYQDVTVDFTSYKAHYKNEEIDLKPKELLVLKCLIQHKNQVLSREQILEEISKDV 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + +V+ +I  LRKKL      D + + + +GY I
Sbjct: 181 ADLPCDRIVDVYIRTLRKKL----ALDCIVTVKNVGYKI 215


>gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHYLGSTEDYDAVILDLGL--PEIDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +     +   + P++ ++   S    +   D+G DD + KP    E++AR+ A I R  
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +        G+   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|253583358|ref|ZP_04860556.1| DNA-binding response regulator [Fusobacterium varium ATCC 27725]
 gi|251833930|gb|EES62493.1| DNA-binding response regulator [Fusobacterium varium ATCC 27725]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 80/225 (35%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +++        +G  ++  +       L    + ++  ++  L    G+  
Sbjct: 3   ILVVEDDKEIQELITYFLIKEGYEVDRASDGLEGLKLLKENKNELVVLDLMLPNLDGKNF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYR 117
            ++ R I +    P+I +    +    +                      +  +      
Sbjct: 63  TKIVRDISSEYGEPVIIMLTAKTEIEDVLDGLEIGADDYMKKPFDPRELVLRIKKFLKTT 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ N R     I +          GE   L ++E  +L  L+ N+   + + +I   +
Sbjct: 123 DREIKNERYRFKDIEIDESRHIVIANGEEVELSKKEYDLLLLLVKNKDLVITRERILDKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +    +  V+ +ISKLR K+      + + + + +GY ++ 
Sbjct: 183 W-NSNYYTGDRTVDVYISKLRDKI--PELSECIKTVKGVGYKLEE 224


>gi|190567143|ref|ZP_03020058.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|190561647|gb|EDV15617.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G       + +      ++ +  +  ++  L        
Sbjct: 4   ILIVEDDPNISSLLQPHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+  
Sbjct: 62  YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  I        F +  +     E   L ++E  + E L++   +  ++  + +
Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           A++   +  VEEN +  +I++LRKK       + + ++ R LGY  +
Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIDETVRGLGYRFN 227


>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Salinibacter ruber DSM 13855]
 gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Salinibacter ruber DSM 13855]
          Length = 253

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D   +     + F   G  +      E     + +    D+  ++  L  K    
Sbjct: 15  LLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQK--DG 72

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R  R      P+I ++     +  L  FD G DD V KP   +E+ ARV A+  R 
Sbjct: 73  FEVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRS 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFS 175
           + +                 P+           L   E  IL Y + +RG+ V++ Q+  
Sbjct: 133 QSALPDTGDVFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQLLR 192

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G+    +    ++ H++ LRKK+         + +   +GY  
Sbjct: 193 DVWGISG-DITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKF 237


>gi|300854679|ref|YP_003779663.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434794|gb|ADK14561.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +   + G         +      D++     ++       
Sbjct: 4   ILIADDEQEIIELMTLYLERENYEVFGAYDGFSALDILKEGAIDIA--IIDIMMPNMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR   ++P+I +S    +   +   + G DD + KP    E++ARV A  RR   
Sbjct: 62  QLIKKIREKYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVMARVKAQLRRCSE 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E     +        +         +   +   E ++L  LM N  K   K QIF
Sbjct: 122 FNCNEEKDTETIVVGELKLDTSCCVIYKGDKPISITSTEYKLLLLLMGNPKKVFTKKQIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +++       ++N +  HISKLR K+         + + R LGY  +
Sbjct: 182 ESVWNEP-FYGDDNTIMVHISKLRDKIEEDSKNPVYLKTIRGLGYKFE 228


>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 246

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++  N  E    +  +   D+  ++  L   G   +
Sbjct: 23  LLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNL--PGMDGM 80

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +R  + +  ++ +S    +   ++  DSG +D + KP H +E+ ARV +   R+ 
Sbjct: 81  EILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRKF 140

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E G +R  +  R    +     L R+E  ILEYL+ N+G+ V++ ++   ++ 
Sbjct: 141 VQKNICLECGKLRFDTRERVAYAEDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVWD 200

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     +  H+S LRKKL+  LG+DP+ +K   GY I
Sbjct: 201 SSVDSFSG-SIRVHMSSLRKKLKAGLGYDPIVNKIGEGYKI 240


>gi|261366315|ref|ZP_05979198.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571914|gb|EFB77449.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 218

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 86/218 (39%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+           G +            L  +   D++ ++  L   G    E
Sbjct: 5   LIVEDEHLIARLIEMSLTRAGYACTVAGDGRTAADLIEANDYDLALLDIML--PGLDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   +     VP+I I+   +++  ++    G DD + KP    E+         R    
Sbjct: 63  LLDYL-RPQGVPVIFITAKGTVKERVEGLRRGADDYIVKPFVVEEL-LARVESVLRRAGR 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  +   + + +        G+   L   E ++LE LM NRG  + +  ++  ++G   
Sbjct: 121 GNVMQAFDVVLDAGEHTVTQNGQPVDLTPNEFQLLEQLMRNRGAALYRDTLYERVWGGDR 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   ++ HI +LR+KL     +D +++   +GY +
Sbjct: 181 AETDTRTLDLHIMRLRRKL---HWYDHIETVYRIGYRL 215


>gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 251

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L       L
Sbjct: 29  ILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRML--PRRDGL 86

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R      P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 87  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 147 TPEQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 207 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56']
 gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56']
          Length = 270

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G       +G S+   +  +    L    + D   ++  L        
Sbjct: 47  ILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLML--PDTNGF 104

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIY 116
           ++   +R     VP+I ++        +   D+G DD V KP    E++AR         
Sbjct: 105 KVCEDLRRWDAFVPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFRRAA 164

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +        G +++               L   E  +L  L    G+ V++ +I   
Sbjct: 165 RPAEAPVEVFSIGNVQINMTAHTVSRGSRSDQLSFYEVELLRLLHERLGQPVSREEILQK 224

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G+ +       V++ I KLRKK+  +    + + +    GY +
Sbjct: 225 IWGI-EAGPSNRTVDNFIVKLRKKIERSPDKPEHILTVYGFGYKL 268


>gi|144900012|emb|CAM76876.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  ++         +S   D++ ++          +
Sbjct: 5   IALVDDDRNILTSVSMALEAEGYKVRTYSDGAEALRGLTSQPVDLAVLDI--KMPRMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           EL + +R  S +P+I ++        L     G DD + KP   + ++ R+         
Sbjct: 63  ELLQRLRKQSAIPVIFLTSKDDEIDELLGLRMGADDYIKKPFSQKLLIERIRALLRRLDA 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A       +N     GP+ +          G+   L   E  IL+ L +  G    + Q
Sbjct: 123 NAEGGDTSAANAAIVRGPLVLDPGRHICTWSGKQVDLTVTEFLILKSLASRPGHVKNRDQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  A YG     V++  ++SHI +LRKK R+    F  +++   +GY 
Sbjct: 183 LIDAAYGESIY-VDDRTIDSHIKRLRKKFRDIDDDFAQIETLYGVGYR 229


>gi|114704744|ref|ZP_01437652.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Fulvimarina pelagi HTCC2506]
 gi|114539529|gb|EAU42649.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Fulvimarina pelagi HTCC2506]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +         ++G  +E +           ++  +++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALENEGYKVETYTDGLSALDGLQASPPNLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------EI 108
           EL R +R  S +P+I ++        L     G DD + KP   R               
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVKAILRRGAA 121

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                     +       E G + +  +      +     L   E  IL+ L    G   
Sbjct: 122 REASPVRAGNVTNPETSLERGQLVMDQERHTCTWKSMPVTLTVTEFLILQSLAQRPGVVK 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 SRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRF 233


>gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         ++  +++  +  E  + +      D+  ++  L        
Sbjct: 3   ILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNL--PKLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R H + P++ ++    L+  +   D G DD + KP    E+ ARV A+ RR   
Sbjct: 61  GVLQQVRDHKRCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGVS 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           +    R     G    L  +E  +LEYLM N G+RV +T I   ++ L
Sbjct: 121 AAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRTMIIEHVWNL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                  NVV+ +++ LR+K+ ++     + + R +GY
Sbjct: 181 K-FDTGTNVVDVYVNYLRRKVDSEFPTKLIGTVRGVGY 217


>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +     A    +G +++         W       DV  ++  L        E
Sbjct: 4   LVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVML--PVLNGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ ++        ++  D G DD V KP     +LAR+ ++ RR   
Sbjct: 62  VCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGAT 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      R     +     G+   L  RE  ++ + M   G  + K +I   ++  
Sbjct: 122 ERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F    + N+VE ++ +LR+K+    G   +++ R  GY +
Sbjct: 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCADLETFRGTGYRL 220


>gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH]
          Length = 247

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220


>gi|312130843|ref|YP_003998183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311907389|gb|ADQ17830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++      F +    +    + +    L +S   D+  ++  L        
Sbjct: 6   LLIIDDEPQIRRLLSINFQNQEYKVIEAATADEGLRLAASHLPDLILLDLGL--PDLSGH 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R     P++ ++     +  +   D+G +D + KP    E+LARV +  R    
Sbjct: 64  ELLKQLREWYTKPILILTVENKEEDIVVALDNGANDYLCKPFRVGELLARVRSALRMNTT 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G + V   G+   + GE+  L   E  +L  L  + G+ +    +   ++G+
Sbjct: 124 ESSSIIQLGALEVDLVGQTTRLDGEILKLTSTEFTLLALLAKHAGRVLTHQFLLKEVWGV 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
                E   +   +++LRKK+         + +   +GY ++
Sbjct: 184 G-YQTETQYLRVFVAQLRKKIEKDPNHPLRLVTVSGVGYRLE 224


>gi|311693637|gb|ADP96510.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 245

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 87/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G+++              + + D+  ++  L   GE  L
Sbjct: 13  ILIVEDDERLAELTREYLESNGLTVSLETHGGAAVERIRNEQPDLVVLDLML--PGEDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV------------NKPIHHREIL 109
            + R +R     P+I ++        +   + G DD +             + +  R   
Sbjct: 71  SICRRVRPFFSGPIIMLTARTDDLDQVLGLEMGADDYIGKPVKPRVLLARIRAMLRRVTE 130

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               +          R +   + V    R+  +  E   L   E  +L  L +N G+ ++
Sbjct: 131 TGSGSADEAGGEEPVRLQFNDLVVDRSMREAWLSEESIDLTSAEFDLLWLLASNAGRVLS 190

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +IF+A+ G+ +   ++  ++  +S++R K+ +       + + R  GY  
Sbjct: 191 REEIFTALRGI-EYDGQDRSIDVRVSRIRPKIGDDPIHPRRIKTVRSKGYLF 241


>gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
 gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A           + G S +     E       +   DV  ++  L       L
Sbjct: 4   LLIIEDDAEAAAYLAKGLDELGHSADRAEDGEAGLEQAMAGSYDVLIVDRML--PKRDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +   +R A    P++ +S    +   +    +G DD + KP    E+ ARV       +
Sbjct: 62  SVIESLRSAGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G + +              PL  RE R+LEYLM + G+ V +T +   +
Sbjct: 122 ASGDLETTYQVGDLVLDRLAHSCRRGDVEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GYSI
Sbjct: 182 W-EYHFDPQTNVIDVHISRLRAKIDKDFDKPLLQTIRGAGYSI 223


>gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  +
Sbjct: 3   ILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGL--PGEDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++      P +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+N+   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQNEYPADVITTVRGQGYRFDV 222


>gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548]
 gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G++       +   +L ++   DV  I+          + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGINTTVAFDGKEALFLINTNNYDVIVIDWM--MPYLDGIS 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                            +   +         L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|222056071|ref|YP_002538433.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565360|gb|ACM21332.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++            SL   +          + R D+  ++  L       +
Sbjct: 11  ILIVDDEPAIQRFLQTALDTGEFSLHKADDGHSALAAAVATRPDIILLDLGL--PDMDGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R +R  SQVP+I +S        +   D+G DD V KP    E+    RVA      
Sbjct: 69  EVIRRVREWSQVPIIVLSVREREDDKVKALDAGADDYVTKPFGIPELLARMRVALRRSLQ 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V      +G + V    R  +VQ E   +   E  +L  L+ + G+ +    +   I+G
Sbjct: 129 EVVEPVFRSGGLEVDLHLRKVKVQEEDVQVTPTEYDLLRLLVTHAGRVLTHAHLLKQIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     + +V+  +IS LR K+  +      + ++  +GY +
Sbjct: 189 VGYVE-QPHVLRVNISNLRHKIEKDPSRPRYIITEPGVGYRL 229


>gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R +++ +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V+G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVALDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|326795631|ref|YP_004313451.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546395|gb|ADZ91615.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 259

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++  ++         + + D+  ++  L   G   +
Sbjct: 13  LLVVEDDIELASLVQEFLSKNGYEVDVISNGLEAVDFILNEQPDLVLLDIML--PGMSGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------------- 104
           ++ + +R     P++ ++        +   + G DD V KP+                  
Sbjct: 71  DVCKTVRTQFNNPILMLTSLDEDMDQMLGLELGADDYVIKPVKPRLLLSRIKALLRRSVV 130

Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           ++  L  +      +    + +++  + +    R    +G +      E  +L+ L+ + 
Sbjct: 131 NQTQLESMNTSRSNVTDGQSGSQSNALEIDLSKRSITYKGALISFTTAEYDLLKMLIDSA 190

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ +++ ++   + G F+    +  ++  IS+LRKKL +       + + R  GY +
Sbjct: 191 GEIISRDEVVQNLRG-FEYDGLDRSIDRRISRLRKKLNDDSINPRVIKTIRGKGYLL 246


>gi|307305644|ref|ZP_07585391.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307317647|ref|ZP_07597086.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306896805|gb|EFN27552.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306902347|gb|EFN32943.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G  +      +           D+  ++      GE  +
Sbjct: 14  LLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R    VP+I ++      + ++  ++G DD + KP   RE++ R+  I RR + 
Sbjct: 72  ALTQSLRQIKSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRRNQP 131

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +           P       ++     +   L  RE+ I+       G+ + + ++    
Sbjct: 132 TQTHKVDQVIFGPYTFSVVRKELRRGADHIRLTDREQEIMTLFSQRAGETIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 189 --GDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRL 230


>gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A   D G  ++     E   +L  +   D   ++  L       +
Sbjct: 8   LLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGL--PKMDGI 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R + + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 66  SVLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 126 GHAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 186 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 221


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 46  LVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMML--PDMDGLT 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAGA 163

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S +    G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 224 WS-YDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 264


>gi|261407711|ref|YP_003243952.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284174|gb|ACX66145.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 80/226 (35%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         +G   +           +    + D++ ++  L       
Sbjct: 9   ILIVDDEPEIRIMIERFLRKEGFYRIYMAGDCASALSICREGKPDIAILDVML--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115
             L   I+  + +P++ +S     +  L     G DD + KP   RE     +       
Sbjct: 67  FSLLSSIKQLTDIPILFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLMAILKRVY 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +         G   +  +        +   L  +E  IL  L  N+G+ V    +  
Sbjct: 127 SSPMAERLPVFRLGEQTIDLESAVVHRNRKELSLTAKEHAILVKLYENQGRIVTSDALCQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A++G  D    EN +  H+ ++R+K+  +      + + R LGY +
Sbjct: 187 AVWG-DDSYGYENTLMVHVRRVREKIERDPSKPIHLLTVRGLGYKL 231


>gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +G      + G ++    + +    +  +    ++ ++          + 
Sbjct: 7   LIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNETIHLAIVDIM--MPVMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R +   P+I +S        +   + G DD V KP    E++ARV +  RR    
Sbjct: 65  MTMKLRENFDFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRRYSRY 124

Query: 123 ------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        N    G + +  D  +  V G    L   E +IL  L+ N G+  + 
Sbjct: 125 LKAVDSKEEKEPENYYVVGGLELNEDTVEVSVDGRAVKLTPIEFKILLLLIKNPGRVFSP 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +I+  ++   ++ +  + +  H+ ++R+K+  N      +     +GY I+ 
Sbjct: 185 DEIYERVWN--EKPITTDTIMVHVRRIREKIEINPKEPKYLKVVWGVGYKIEK 235


>gi|30022514|ref|NP_834145.1| two-component response regulator yvcP [Bacillus cereus ATCC 14579]
 gi|229048152|ref|ZP_04193721.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229111911|ref|ZP_04241455.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229129718|ref|ZP_04258686.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229147010|ref|ZP_04275370.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296504931|ref|YP_003666631.1| two-component response regulator yvcP [Bacillus thuringiensis
           BMB171]
 gi|29898072|gb|AAP11346.1| Two-component response regulator yvcP [Bacillus cereus ATCC 14579]
 gi|228636398|gb|EEK92868.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228653835|gb|EEL09705.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228671475|gb|EEL26775.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228723139|gb|EEL74515.1| Two-component response regulator [Bacillus cereus AH676]
 gi|296325983|gb|ADH08911.1| two-component response regulator yvcP [Bacillus thuringiensis
           BMB171]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|317052735|ref|YP_004113851.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316947819|gb|ADU67295.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +LI+D+  +++        DG   +E  ++      +      D+  ++  L G  G +
Sbjct: 4   ILLIEDQEELRELVEYNLVRDGQFQVESVDNANDALMMLEDIEVDLILLDLMLPGLSGLE 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +     S++P+I IS     Q  +     G DD + KP   + + A+V A+ RR 
Sbjct: 64  FLRILKNSVERSEIPVIIISAKSGEQDIVTGLSLGADDYITKPFSMKVLKAKVDAVLRRA 123

Query: 120 KVSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +NR      I +  +     V G    L  +E  +L   +    K   + Q+ S+I+
Sbjct: 124 LHHDNRTVAYGSISIDMETHKAYVDGNEVVLTMKEFELLHLFLKRPKKVFHRNQLLSSIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D  V    V++HIS LRKKL +K     + S   +GY +D
Sbjct: 184 G-YDSEVYTRTVDAHISSLRKKLGDKG--KMIRSIPKVGYGMD 223


>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++   + E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIML--PKLNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +R +     ++ ++   S+   +   D G DD + KP    E+LAR+ A + R+ 
Sbjct: 61  EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E   + +    +     G+   L  +E  +LEYL+ N+G  +++ +I  +++ 
Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRAGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YGYEGESNIIDVLIKNIRKKIDVGNSKPLIHTKRGLGYVL 220


>gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
 gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AB058]
 gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIEGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219


>gi|182684578|ref|YP_001836325.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|182629912|gb|ACB90860.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 255

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 34  ILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 92  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 151

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 152 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 212 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 250


>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
 gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIM--MPTMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDETRHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 13/223 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +++   A    +G      ++ E    L  +   D+  ++  L   G    E 
Sbjct: 7   LVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIML--PGMDGYEF 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIYR 117
            + IR  S VP+I IS        +   + G DD + KP   RE++       + +  +R
Sbjct: 65  CKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRSTSHR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + ++  +R +   + V+ + R    +GE F    +E  +L  L  N  +  ++ ++   I
Sbjct: 125 QDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELLMKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D    +  V+  I ++RKK+ N      +++    GY +
Sbjct: 185 WGN-DYFGSDRAVDDLIKRIRKKMGNIP----LETVWGFGYRL 222


>gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
 gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +      L  +     + +   L+  G   L
Sbjct: 9   ILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEP--ALLLLDLMLPGMSGL 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           EL + +R   + VP++ ++    +   +     G DD + KP    E    +  +    R
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N  +   + +  +       G+  PL  +E   LE LM+  G+  ++ +I S +
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +E    N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 187 WGA-NEDPLTNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229


>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G + +          L  +   D+  ++  L        
Sbjct: 3   ILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGHDLVVLDVGL--PDISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++R +S VP+I ++        +   + G DD V KP   RE+++RV AI RR + 
Sbjct: 61  DVCRLLRRNSDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRSRP 120

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                     +    V  +G      G    L R E  +L  L+A  G+ +++ QI   +
Sbjct: 121 ELRNGAGATASARFTVDGEGLRVAYHGVWLNLTRYEYLLLTLLLARPGRILSRGQIMENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E++E   V++H+  LR KLR  +   +P+ + R LGYSI
Sbjct: 181 WQDSGESLE-RTVDTHVKTLRGKLRAVRADEEPILTHRGLGYSI 223


>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLH 73

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +R  +++ P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVTTLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|223986505|ref|ZP_03636505.1| hypothetical protein HOLDEFILI_03820 [Holdemania filiformis DSM
           12042]
 gi|223961535|gb|EEF66047.1| hypothetical protein HOLDEFILI_03820 [Holdemania filiformis DSM
           12042]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +          D    +    S E   +L   A  D+  ++  L    +  +
Sbjct: 5   LIVEDDKEIARIIRYYLSQDNLYEVVSAASAEEALFLARDA-YDIILLDVGL--PDQSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R     P++ IS      T +     G DD + KP  +  + AR+ A  RR + 
Sbjct: 62  DLCAQLRQWHDCPILFISCLDDSNTIISALQQGGDDYIVKPFDNEILHARIQANLRRWRN 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +                      +  G  +PL   E +IL +LM + G+    ++++
Sbjct: 122 DRQQKKTVNELRCASFTLNAQTHELTKTDGTCYPLVPMEFKILAFLMQHAGQCYKASELY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
           + I+G      +   V  HI  LRKK+  +      + S    GY   D N
Sbjct: 182 NHIWGKSSY-GDHRTVVVHIHNLRKKIEQDPAEPQLLQSVWGKGYCFIDEN 231


>gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52]
 gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33]
 gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51]
 gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52]
 gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51]
 gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33]
 gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395]
 gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395]
 gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|325663027|ref|ZP_08151477.1| hypothetical protein HMPREF0490_02217 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470481|gb|EGC73711.1| hypothetical protein HMPREF0490_02217 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G                +L+    +    R  +  ++  L        
Sbjct: 16  ILIVEDDRGLNQGITLALHAPEYRFYSAYNLKEARRIWKEERVSLIILDINL--PDGSGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S+VP+I ++        +  F  G DD + KP     + ARV  +  R+  
Sbjct: 74  TFLEEIRRESEVPVIMLTANDLEIDQVTGFSLGADDYITKPFSLMILRARVERMLARMAQ 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       F   +       +   L + E+++L  L+ ++G+ + + Q+   I+  
Sbjct: 134 DKGLTYEKDGYRFVFEQMYFTVEGKEVTLSKTEQKLLRILIEHQGQTLTREQLVDRIWSD 193

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + VEEN +   + +LRKKL      +P+ +   LGY  +
Sbjct: 194 GAQYVEENALSVTVGRLRKKLEQTGKKNPIQTVYGLGYVWE 234


>gi|220916055|ref|YP_002491359.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953909|gb|ACL64293.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V+    A     G  +E   ++   E L      DV  ++  L       ++
Sbjct: 9   LVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGL--PDGDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           L R +R  ++ P+I +S     +  +   D+G DD + KP    E    +       +  
Sbjct: 67  LARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARVRVALRHAQAP 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+R+    R+    G    L   E R+L  L  N GK +   QI   ++G
Sbjct: 127 PDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILREVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               A E + V   +++LRKKL ++      + ++  +GY +
Sbjct: 187 PN--ATEAHYVRVQVAELRKKLEDEPARPRLLMTEPGVGYRL 226


>gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F ++G +++   + E   +   +   D   ++  L       +
Sbjct: 6   LLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPI--IDGI 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R  +   P+I ++   S++  +   DSG DD + KP    E+L+RV A I RR 
Sbjct: 64  SLLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRRF 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   + + +  +  +   +   L  +E  +LEYL  N+ K +++T I   +Y 
Sbjct: 124 ATSSPIIKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSIIEHLYD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  +  NV++  I+++R K+        + + R +GYS+
Sbjct: 184 E-DFDLYSNVIDVFINRIRNKIDKDFDKKLIHTYRGIGYSL 223


>gi|319938458|ref|ZP_08012852.1| DNA-binding response regulator VncR [Coprobacillus sp. 29_1]
 gi|319806374|gb|EFW03041.1| DNA-binding response regulator VncR [Coprobacillus sp. 29_1]
          Length = 218

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ +G     G+        +  +       +    +  ++  L       +
Sbjct: 3   ILVVEDEDMILEGICEYLGEHEYYCIAASDGQEAIEKFKNNEIHLVLLDIML--PKLNGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P++ ++ +      +  F    D  + KP     +  R+ A+ +R   
Sbjct: 61  EVLQYIRKTSKIPVLMLTAFNDDDYKIKAFSGLCDGYIEKPFSLSLLETRINALLKRHYS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +       +V         +GE   +  +E +ILE L+ N    + + QI   ++   
Sbjct: 121 NYSIFNYKDCQVNFTSYKATYKGEDVSVNAKELKILELLLKNENIVLTRNQIIDGVWKED 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    + VV+ +I +LRKKL    G D + + R +GY I
Sbjct: 181 ESIPYDRVVDVYIKELRKKL----GLDCIKTIRNVGYKI 215


>gi|326790349|ref|YP_004308170.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541113|gb|ADZ82972.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G  +    +        ++    +  ++          L
Sbjct: 6   ILVVDDDLQIMEVLCKLLELEGYKVHSSFNGFEAIDYINNNSIQLVILDVM--MPHLNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    VP+I +S        +     G DD + KP +  E+LARV A  RR  +
Sbjct: 64  TALLKIREKHNVPIIMLSAKTEETDKVCGLSLGADDYIEKPFNTAELLARVKAQLRRYML 123

Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                E                    ++  V    + L   E +ILE LM +  +  +  
Sbjct: 124 LGASIENAAQTHDLIEVGDLVLNQATKEILVCDIPYALTATEYKILELLMKHPNQVFSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++     AVE N V  HI ++R+K+  N      +     +GY I+
Sbjct: 184 QIYENVWQETVYAVE-NTVMVHIRRIREKIEMNPKEPKYLKVVWGIGYKIE 233


>gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 384

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+ D        +G  +      +    L    R D   ++  L     + L
Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWML--PDIQGL 223

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           +L R +R      +I ++        ++   +G DD + KP +  E+          +  
Sbjct: 224 DLCRRLRELINPVIIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTS 283

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I ++   R+      +  L   E  +L   M +  + + K  I   I+G
Sbjct: 284 SPEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWG 343

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   + N+VE +I  LR+KL+       + + R +GY  +
Sbjct: 344 -HNFTGDLNIVEVYIGYLRRKLQKPS---LIHTVRGVGYLFE 381


>gi|209966094|ref|YP_002299009.1| transcriptional regulatory protein ChvI [Rhodospirillum centenum
           SW]
 gi|209959560|gb|ACJ00197.1| transcriptional regulatory protein ChvI [Rhodospirillum centenum
           SW]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +   +      +S   D++ ++          +
Sbjct: 5   IALVDDDRNILTSVSIALEAEGFEVRTYGDGDEALRGLTSRPVDLAVLDI--KMPRMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP+I ++        L     G DD + KP   R ++ R+ A+ RR ++
Sbjct: 63  ELLQRLRQTSAVPVIFLTSKDDEIDELQGLRMGADDYIRKPFSQRLLIERIRALLRRQEL 122

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++ R E  P ++                 +G+   L   E  +++ L    G    + Q+
Sbjct: 123 THGRGEADPGQMLVRGELVLDGARHLCTWKGQEIDLTVTEFLLVKALAQRPGHVKNRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             A YG     V++  ++SHI +LRKK +     F  +++   +GY    N
Sbjct: 183 MDAAYGEHIY-VDDRTIDSHIKRLRKKFKAVDENFAQIETLYGVGYKYRDN 232


>gi|297201899|ref|ZP_06919296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712728|gb|EDY56762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D            +    S+     L    R D + ++  L         
Sbjct: 13  LVVEDEESIADVLAIALRYHRFEVMVAGSVREALALTDRTRPDAALLDVML--PDGDGRA 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R       +           +       DD + KP +  E++AR+ A+ RR + +
Sbjct: 71  LGRELRERRPDLALVFLTARDSPAEIVGALGFGDDYITKPFNIDEVVARITAVLRRTRPA 130

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +  P+R                G    L   E  +L +L+ N G+ V K Q+   +
Sbjct: 131 DVLPQRPPLRYGDLELDETTYSVHRDGRTVQLTPTEYALLRFLVRNGGRIVPKEQLLRHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +       E  VVE++IS LR+KL + LG   + ++R +GY
Sbjct: 191 WQYEHTPPESTVVETYISYLRRKL-DALGPPVITTRRGVGY 230


>gi|182680446|ref|YP_001834592.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636329|gb|ACB97103.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 273

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 81/229 (35%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        D G  +    + E       +   D+  ++A     GE   
Sbjct: 48  LLIVDDDRRIRALLARFLADQGYRVTTAGNAEEATASLRNFAFDLIVLDAM--MPGENGF 105

Query: 62  ELPRIIRAHS----QVPLIGISDYPSLQTTLDFF-----DSGVDDVVNKPIHHREILARV 112
           +L   +RA       VP++ ++     +  +  F     D        + +  R      
Sbjct: 106 DLLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILR 165

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A  R +     +   G      +  + +  GE+  L  RER +L  L  N G+ V++  
Sbjct: 166 RAQPRAVSGPVTQVRFGDFTFDLERGELQQGGEIVRLTERERDMLRLLAENAGEIVSREA 225

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +             E  V+  +++LR+K+  +      + + R  GY +
Sbjct: 226 LA-----GLGIGGNERTVDVQVNRLRRKIERDLANPLHLQTARGAGYRL 269


>gi|218234534|ref|YP_002369247.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162491|gb|ACK62483.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKINPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L    G  V
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGLDV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 66  LRRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 183 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223


>gi|241206417|ref|YP_002977513.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860307|gb|ACS57974.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + L    G       S    + +    + D+  ++A L   GE   
Sbjct: 15  ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML--PGEDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   VP++ ++        +   + G DD V KP + RE+LAR+ +I RR   
Sbjct: 73  SICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174
           ++++ E     +FS  R      ++         +   E  IL     N  K + + Q+ 
Sbjct: 133 AHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           S  +      VE   +++HIS++R+K+   L     + + R  GY  
Sbjct: 193 SMTHAGSAGPVE-RSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 238


>gi|118477352|ref|YP_894503.1| response regulator DrrA [Bacillus thuringiensis str. Al Hakam]
 gi|229184130|ref|ZP_04311339.1| Response regulator DrrA [Bacillus cereus BGSC 6E1]
 gi|118416577|gb|ABK84996.1| response regulator DrrA [Bacillus thuringiensis str. Al Hakam]
 gi|228599245|gb|EEK56856.1| Response regulator DrrA [Bacillus cereus BGSC 6E1]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         +G   +                  D+  ++  L       
Sbjct: 9   ILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVML--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115
             L   IR  S  P++ +S     +  L     G DD + KP   RE     +       
Sbjct: 67  FSLLSSIRKFSSTPVLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILKRVY 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +    +    G   V  +        +  PL  +E  IL  L  N+G+ +    +  
Sbjct: 127 SSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPLTAKEHAILVKLYENQGRIITNDALCQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A++G  D    EN +  HI ++R+K+  +      + + R LGY +
Sbjct: 187 AVWG-DDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKL 231


>gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
 gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDPLLTRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|182626720|ref|ZP_02954461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium perfringens D str. JGS1721]
 gi|177907943|gb|EDT70532.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium perfringens D str. JGS1721]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   +++   +   DDG  +  F + +           D+  ++      G    
Sbjct: 5   IYVADDEKNIRELIKSFLVDDGYDVITFETGDRLLGEFKQKIPDLVILDV--SMPGTDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S VP+I ++   +    +  F  G DD   KP    ++  RV A+ +R+  
Sbjct: 63  SICSSIRKISNVPIILLTARDTDADYITGFTLGCDDYFTKPFSPVKLTMRVKAMLKRISN 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +A+   I           +    +     L   E  +L Y++ N+ K V++ ++ + 
Sbjct: 123 EKEKAKNEEITFGDIVLLPAKKSAYCKEHEIKLTNTEFELLYYMIENKEKAVSREELLNV 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +   VE  V +  I +LRKK+R       +D+    G+ +
Sbjct: 183 IWG-YSSEVETRVTDDTIKRLRKKIRLNNSCVSIDTIWGFGFKL 225


>gi|168204365|ref|ZP_02630370.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170664057|gb|EDT16740.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++   ++      +       ++ ++            
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIM--MPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N  +    +  S            ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++     AV  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 185 IYERVWNGN--AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct]
 gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112]
 gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549]
 gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida Fx1]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+          + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWM--MPYLDGIS 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                            +   +         L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++DG      ++G ++              +    +  ++          + 
Sbjct: 7   LVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEVHLIILDIM--MPNMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
               IRA   +P+I +S        +     G DD V KP H  E+        R     
Sbjct: 65  ATFKIRAERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   + E   + +  D ++  ++GE   L   E +I E LM N G+  +  +I+  
Sbjct: 125 GTYSEGATKVEIDGLILDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++       E N+V  HI K+R+K+  +      +     +GY ++ 
Sbjct: 185 VWNEEAYNAE-NIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230


>gi|160933606|ref|ZP_02080994.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753]
 gi|156867483|gb|EDO60855.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G                     D+  ++  L   G    
Sbjct: 15  ILIVEDDPNIARTIEVTISLVGYECRICGDGAAAVQEVLEHDYDLVLLDVML--PGMDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I      P+I ++    +   +     G +D + KP    E+LAR+  + RR   
Sbjct: 73  EVIQKI-QSKGTPVIFLTALQDVTDKVKGLRLGAEDYIVKPFEAVELLARIEVVLRRSHK 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     I +  D       GE   L  +E  +L + M N    V + ++ +A++G +
Sbjct: 132 GRVQIVYDDITIDMDRHLVTKAGEPVALTPKEFSLLAFFMENVDVAVTRERLLAAVWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E   V+ H+ +LRKKL   L    + +   LGY ++
Sbjct: 191 EFQGESRTVDIHVQQLRKKL--DLSRRLI-TIPKLGYRLE 227


>gi|56477968|ref|YP_159557.1| DNA-binding response regulator OmpR [Aromatoleum aromaticum EbN1]
 gi|56314011|emb|CAI08656.1| DNA-binding response regulator OmpR [Aromatoleum aromaticum EbN1]
          Length = 253

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 90/236 (38%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G+           +      R D+  ++      GE  L
Sbjct: 8   ILIVDDDKEIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDIM--MPGEDGL 65

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            L R +R    AH+ +P++ ++        +   + G DD + KP   RE+ AR+ AI R
Sbjct: 66  TLCRNLRAGAGAHANLPVLMLTARGEDMDRIVGLEMGADDYLPKPFVPRELYARIRAILR 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGE------------VFPLPRRERRILEYLMANRG 165
           R +      E  P            + +            + PL   E R+L   + +  
Sbjct: 126 RARALPPNLEGSPADHAGQLHFAGWRLDTAGRHLIDQDGTIVPLSGAEHRMLMVFLTHPQ 185

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++ Q+     G  +    +  ++  +S+LR++LR+       + + R  GY +
Sbjct: 186 RVLSRDQLMELTQGR-EADAFDRSIDLLVSRLRQRLRDNAREPAIIKTVRNEGYVL 240


>gi|259503740|ref|ZP_05746642.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259168303|gb|EEW52798.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   V +         G   E        E   ++A +    I   L    +  +++ 
Sbjct: 2   IEDNHSVCEMMAMFLKKQGWQYEFAYDGIEAEEKFTAAPDKWDVILLDLNLPKKDGMQVA 61

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             IR  S   PLI ++   +    +   + G DD V KP     ++AR+ A+YRR ++S 
Sbjct: 62  ADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRRSQLSK 121

Query: 124 NRAET-------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  +                               +  L  +E  +L+ L +   +   +
Sbjct: 122 HPEDQDGTAARDFDVQTKNFRMNTKTREVYLYDQPIADLTPKEFDLLKTLASKPRQVFTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+   ++  ++   +E  V++HI KLR+KL + LG   + +   +GY  D
Sbjct: 182 EQLLQLVWD-YEYYGDERTVDAHIKKLRQKLED-LGPQVIKTVWGVGYKFD 230


>gi|168184909|ref|ZP_02619573.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672016|gb|EDT83977.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D         +  ++           +  +    V  ++          +
Sbjct: 7   LVVDDEKEIRDAIEIYLRSIENTNIIKAADGLDALDVLENNEIHVIILDIM--MPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
                IR  + +P+I +S        +   + G DD V KP +        + ++     
Sbjct: 65  RTCMKIREKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQLRRYTN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +        V G+   L   E  IL  L  N G+    +QI
Sbjct: 125 LGNFPKTADVDEIYIDQLFINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSSQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++        EN V  HI +LRKK+  +      +     +GY ID 
Sbjct: 185 YEYVWNEPSFK-TENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233


>gi|28210587|ref|NP_781531.1| two-component response regulator [Clostridium tetani E88]
 gi|28203025|gb|AAO35468.1| two-component response regulator [Clostridium tetani E88]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V     A  G +G  +    S      +       +  ++  L     +  
Sbjct: 5   ILIIEDEEKVSSVLKAYLGKEGYKVISTTSGIEGIEIFKKGNFKLIILDLML--PDIEGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ +IIR  S V +  ++    L   ++  + G D+ + KP   RE    +  +      
Sbjct: 63  EVCKIIRGISDVYIFMLTAKGDLSNRIEGLNIGGDEYLVKPFSPRELTARVNALFRRIGG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++    R  E++     L   E +IL  L +N+GK   +  + ++  
Sbjct: 123 EDEEILSFNNGELKINKIKRIVEIEKRDVKLTPNEFQILYALASNKGKVFTREMLINSAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           GL D    +  V+ H+  +RKK+         V +   +GY  
Sbjct: 183 GL-DFQGFDRTVDVHVKNIRKKIEKDSRNPKYVLTVTRVGYKF 224


>gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +        +G S++     +      +    D   ++           
Sbjct: 3   LLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIM--MPKVNGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA   + P++ ++   +++  +   DSG +D + KP    E+ AR+  + R  K
Sbjct: 61  EVLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRLAK 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S           + +         ++  L  RE  +LEY++ N+   +++ +I + I+ 
Sbjct: 121 GSATTHLQAGDLILDTATHTVHRGEKLLLLSAREYALLEYMLLNKNIVLSREKIENHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     N+V+ +IS LRKK+        + + R  GY +
Sbjct: 181 -YEYEGGTNLVDVYISYLRKKVDGGFSCKLIYTVRGSGYVL 220


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +              ++     E       S    +  ++  L       +
Sbjct: 3   ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIML--PKLNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+H+  +P++ ++   S +  +   D+G DD + KPI   E++AR+ A+ RR  
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S            +  +      +   PL  +E  ++E  + +  +  +   I   ++ 
Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +E   +N V +HI  LR KL++  G    +++   +GY I
Sbjct: 181 I-EEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           D   + +   AL    G+ ++  N+      +   +  D+  I+  +    G  + ++ R
Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552

Query: 66  IIRAHSQVPLIGISDY 81
                  +P++ ++++
Sbjct: 553 NEPRWRYLPILVLTNH 568



 Score = 42.3 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 1/120 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D   ++ +  I      G+       +     +    +  +  +E       E  L
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   I   H ++P++  S   S    L     G    + KP+   +I+  V  I     
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIVTGILNHHN 483


>gi|296135306|ref|YP_003642548.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294339408|emb|CAZ87764.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795428|gb|ADG30218.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 248

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED---VSAIEAFLIGKGE 58
            +L++D   +           G  +    +    E   +  R D     A+   L+    
Sbjct: 12  LLLVEDDLRLAQQVSDFLQSAGWQVTHAANAAQAEGELNPRRGDALGFDALVLDLMLPDG 71

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L++ R +R HS +P++ ++        +   + G DD + KP   RE+LAR+ AI RR
Sbjct: 72  DGLDICRRLRTHSDLPVLMLTARGDPFDRVVGLEIGADDYLTKPFEPRELLARLRAITRR 131

Query: 119 L--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +      G + +    R   + GE  P+   +  +L+ L  + G+ + +
Sbjct: 132 RAGSLSPRDPQAEQILRFGRLDIDPAARQARIDGEDRPMTAYQFDLLQVLARHPGRVLTR 191

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +  A+ G   EA +   ++ HIS++R  + +       + + R  GY  
Sbjct: 192 EFLLGAVKGESLEAFD-RSIDVHISRIRAAIEDDPRHPRRILTLRGAGYVF 241


>gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L]
 gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1]
 gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055]
 gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B]
 gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum]
 gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94]
 gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI]
 gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L]
 gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1]
 gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
 gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G+ +E            + A  D+  ++  L       ++
Sbjct: 6   LVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGL--PDLDGVD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R +R  S VP+I +S        ++  D G DD V KP    E++ARV          
Sbjct: 64  VLRQLRQSSSVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRRGGAE 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   T    +     +         L   E R+L  L  +RG+ V   Q+  A++G
Sbjct: 124 PSGPAPVVTADFSLDFTTYEASGPTGAVHLTPTEWRLLAELARHRGRVVPHEQLLRAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 E N +  +  +LR+KL         + ++  +GY +
Sbjct: 184 -PQYGRESNYLRVYCGQLRRKLEPEPSLPRWIVTEPGIGYVL 224


>gi|295108183|emb|CBL22136.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 220

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KLNMEELHRYDLILLDIM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKKIRTLVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARIHAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   +  +   L + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLMDDKELSLTKAEYEICEFLAKNRGQVFSKEQILEKVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K      + P+ +   +GY  + 
Sbjct: 180 FDSESNDSTIITHIKNIRSKFAE-YNYTPIKTVWGIGYKWEE 220


>gi|182419360|ref|ZP_02950612.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237666528|ref|ZP_04526513.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376691|gb|EDT74263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237657727|gb|EEP55282.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    +         + R ++  ++  L        
Sbjct: 3   ILVVDDEKSIVNLIRMNLELEGYQVVISMNGIDAIEKFETERPELVILDIML--PDISGH 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
           E+ R  +   S++P+I ++    +   L     G DD + KP +  E++        R+ 
Sbjct: 61  EVIRKFQKIDSEIPVIMLTANSQINDKLLGLQLGADDYITKPFNSIELMLRIKAITKRIN 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             Y   K +NN  +   IRV  D R   + GE      +E   L  +M N  K   + ++
Sbjct: 121 KKYNGKKENNNEFKIKGIRVLKDERKVFIDGEEIIATYKEFDTLVLMMENCNKVFTREKL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G ++       V+  I +LRKKL      + + +   +GY  +
Sbjct: 181 LKRVWG-YEFEGNTRAVDILIQRLRKKLGVYS--ECLKTIYGVGYRFE 225


>gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 259

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   ++D         G  ++  +     + L      D+  ++  L    G  +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYIPDLILLDLMLPKVDGLTL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
            +  R     + +P++ ++     +  +  F+SG DD + KP    E+         R  
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     GP+ +  +  +         L   E  +L  L+   G+ VA + I
Sbjct: 125 RAPLGASNQNEILSYGPLTLVPERFEAIWFDSPVRLTHLEFELLHCLLQRHGQTVAPSLI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYRAGYCLE 232


>gi|86742984|ref|YP_483384.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86569846|gb|ABD13655.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 244

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +          G  +      E    L  +   D+  ++           
Sbjct: 18  LLVAEDDEASRIALARSLERFGYRVLEAADGEAALRLFQTTEIDLVVLDV--AMPRMDGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
            +   +R  S+VP+I ++        +   + G DD V KP            R      
Sbjct: 76  AVLSRLRQTSEVPVIMLTGRAEEVDRVVGLELGADDYVVKPYSLRELVARVRARLRRRPA 135

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +R    ++    G + +    R+  V GE   L  RE  +L +L  +  +  ++ +
Sbjct: 136 EPPPQRTGDGSDPLVYGDVSIDLRAREVAVAGERIDLTAREYELLAFLARHPRRVFSREE 195

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   ++G      +   V  H+ ++R K+         V + R +GY  D
Sbjct: 196 LLEQVWGTR--FQDPATVTEHVRRVRTKVEGRPPQRRLVTTLRGMGYRFD 243


>gi|283455806|ref|YP_003360370.1| response regulator of two-component system [Bifidobacterium dentium
           Bd1]
 gi|283102440|gb|ADB09546.1| Response regulator of two-component system [Bifidobacterium dentium
           Bd1]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +          +G +    +         +  R D+  ++  L       LE  
Sbjct: 2   VEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIML--PVMDGLEAT 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---------AI 115
           + I A   VP++ ++        +    +G DD + KP   RE++AR            +
Sbjct: 60  KRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   +    + G + +    R   V GE   L   E  +L  L       + + ++  
Sbjct: 120 IAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 180 EVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 220


>gi|258516238|ref|YP_003192460.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779943|gb|ACV63837.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++         +G  +    + E               +   L+       
Sbjct: 6   IMVADDEERIRRLVKMYLEKEGYEVGQAINGEDVLKQLGQDA-SWDLLLLDLMMPETDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           ++ R +R  S +P+I ++        +   + G DD V KP   RE++AR          
Sbjct: 65  QVCRELRKKSDIPIIMLTARGDEIDRVLGLELGADDYVLKPFSPRELVARIKALLRRVRR 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +++     + +   + +    R   + G+V  L  +E  +L ++  + G+  ++ Q+   
Sbjct: 125 KQVYGDEVQLQFSGLTIDPASRKVILMGQVLSLTPKEFDLLLFMSQSAGQVFSREQLLRN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           I+  +D   +   V++HI++LR KL + K     + +   +GY  + 
Sbjct: 185 IW-NYDYFGDPRTVDTHINRLRDKLTKIKDAPQYIHTVWGVGYKFEV 230


>gi|271968062|ref|YP_003342258.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511237|gb|ACZ89515.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 238

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++          G  +           L    R D+  ++  L       +
Sbjct: 12  LLLVEDDEVIRRTVAMTLERYGYEVSVAGDGLTGLELFRDGRHDLLLLDVMLPA--LDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S VP++ +S        +   ++G DD V KP+    ++AR+ ++ RR   
Sbjct: 70  GLCRRVRESSVVPILMMSARGDSPDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRAAF 129

Query: 122 SNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +                       +   G +    GE   L   E R+L    AN G  +
Sbjct: 130 APPAPPAEQPSEPAGASLVFGDLSIDPQGLEVRRAGEPVALAPTELRLLLEFAANPGIVL 189

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  +   ++  +    +  VV+  + +LRKK+    G D +++ R  GY +
Sbjct: 190 DRQTLLRDVWD-YGWDGDSRVVDLCVQRLRKKI----GADRIETVRGFGYKL 236


>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +             +   DV  ++  L       L
Sbjct: 4   ILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R++ 
Sbjct: 62  EVARRVREVKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V         + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 8   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIEGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 66  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 125

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 126 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 186 -NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 224


>gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  IILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNQC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|86358612|ref|YP_470504.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282714|gb|ABC91777.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        ++G  +         +   +    D+  ++      GE  +
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA   VP+I ++        ++  ++G DD ++KP   RE++ R+  I RR   
Sbjct: 72  DVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAN 131

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++ +   EV  L  RE+ I+       G  + + ++    
Sbjct: 132 GEGLKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 189 --GNDTEVGERTIDVQINRLRRKIEEDPANPVWLQTVRGIGYRL 230


>gi|21243530|ref|NP_643112.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109094|gb|AAM37648.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 80/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D +       A    DG  +      E    L      D+  ++  L       +E
Sbjct: 7   LLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I ++        L     G DD V KP   +E++ARV A+ RR    
Sbjct: 65  VLSTIRRAGDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVAM 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQIF 174
               E       S      V              L   E  +L  L+    K   ++++ 
Sbjct: 125 RAPGEPLQHGRLSVDPAAVVASVQHENGDSVALDLTPTEFNLLALLLKTPFKAFTRSELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L D    E VV+SHI  LR+KL        + + R +GY  
Sbjct: 185 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 228


>gi|291007109|ref|ZP_06565082.1| sensor histidine kinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1105

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 3    VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            +++DD   +           G  +      +         + D   ++  L        E
Sbjct: 884  LVVDDEPQLLRALRINLTARGYEVLTAVDGKAALRAAGDGKPDAVVLDLGL--PDMDGSE 941

Query: 63   LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            +   +R  + VP+I +S        +   D+G DD V KP    E+LAR+ A  RR   +
Sbjct: 942  VIAGLRGWTTVPIIVLSARTDSTDKVHALDAGADDYVTKPFGMDELLARLRAAVRRANTA 1001

Query: 123  NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +         V    +    +G    L   E  +LE L+ N+G+ V + Q+   ++
Sbjct: 1002 DREDQPVVETATFSVDLAAKKVRREGAEVHLTPTEWGMLEVLVRNKGRLVGQKQLLKDVW 1061

Query: 179  GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            G    A E + +  ++++LR+KL  +      + ++  +GY  + 
Sbjct: 1062 G-PAYANETHYLRVYLAQLRRKLEADPSRPRHLITEAGMGYRFEV 1105


>gi|256852704|ref|ZP_05558075.1| response regulator [Enterococcus faecalis T8]
 gi|256712049|gb|EEU27086.1| response regulator [Enterococcus faecalis T8]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   I+  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILIDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|153956151|ref|YP_001396916.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856477|ref|YP_002473599.1| hypothetical protein CKR_3134 [Clostridium kluyveri NBRC 12016]
 gi|146349009|gb|EDK35545.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570201|dbj|BAH08185.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 86/224 (38%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +  G        G  ++   +    E L ++ + D+  ++  L        
Sbjct: 4   IFFVEDDFSLISGLSFAMKKQGYEIDVARTSLEAESLWTNGKYDLVILDVSL--PDGSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRR 118
           +L + IR  S+VP++ ++        +   D G DD + KP         +  +      
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETNIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSDN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I+V     +    GE   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNDIKVQLLKGEVYKNGEQLDLTASEYKLLCLFMENPDIVLSSEQILSKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              +  ++ N +  +I +LR K+ +  G    + + R +GY  +
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDDPGKPQKIVTVRRMGYKWN 225


>gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
 gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ ++  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGL--PGMSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY  
Sbjct: 180 PDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGYLF 220


>gi|332285068|ref|YP_004416979.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330429021|gb|AEC20355.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLLVEDETKTGDYVRQGLVESGFVVDLVRTGLDGHHLALTGSYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +R A S  P++ ++   S++  +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + +    R  + +     L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 APAFQDQLQIADLVLDIPRRRAQRKSVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFDPKLIHTVRGMGYMLDV 223


>gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +  +   + G+  ++  +
Sbjct: 125 AMGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLRLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|312961275|ref|ZP_07775780.1| two-component system, OmpR family, response regulator [Pseudomonas
           fluorescens WH6]
 gi|311284933|gb|EFQ63509.1| two-component system, OmpR family, response regulator [Pseudomonas
           fluorescens WH6]
          Length = 235

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +   +  +         +  +  ++  L   G+  L 
Sbjct: 10  LLVEDDEKLAGLIAHFLSQHGFEVRVVHRGDEALAAFLDFKPKIVVLDLML--PGQSGLH 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+ S  P++ ++        +   +SG DD V KPI    +LAR+ A+ RR    
Sbjct: 68  VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQAPE 127

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R   +  +   L   E  +L  L +N G  +++  I + + G
Sbjct: 128 PTVRGALAFGRLAIDRSCRVVSLGEDTIDLTTMEFELLWLLASNAGTLLSRDDILNRMRG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +         V+ +ISKLR KL +       + +    GY  +
Sbjct: 188 IA-FDGLNRSVDVYISKLRGKLNDNPREPVCIKTVWGKGYLFN 229


>gi|253579380|ref|ZP_04856650.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251849478|gb|EES77438.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 220

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +      G DG  +    + +  + ++     D+  ++      G    
Sbjct: 4   LLVVDDEVSILELIKNSLGKDGYLITVCQNADDVD-IKKLHFYDLILLDVM--MPGTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--AAIYRRL 119
           E  + IR     P++ ++     +  L     G DD + KP   +E+ ARV       + 
Sbjct: 61  EFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHLRREKR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +  +    IR     +   V  +  PL + E  I EYL  NRG+   K QI+ A++G
Sbjct: 121 EHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIYEAVFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + + + +HI  +R KL       PV +   +GY  +
Sbjct: 181 -FDGIGDNSTISTHIKNIRAKLE-HFKISPVSTVWGIGYKWE 220


>gi|226939136|ref|YP_002794207.1| DNA-binding transcriptional regulator RstA [Laribacter
           hongkongensis HLHK9]
 gi|226714060|gb|ACO73198.1| DNA-binding response regulator in two-component regulatory system
           with RstB [Laribacter hongkongensis HLHK9]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 17/230 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A + +         G+ +   +  +       +A  D+  ++  L   G+  L L 
Sbjct: 8   VEDDAELAELISDYLRSYGLDVTVIDRGDTAFDAILAAPPDLVLLDIML--PGKDGLTLC 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R   Q P++ ++   S    +  F+ G +D V K      +LAR+ A  R+   S +
Sbjct: 66  RELRGQYQGPIVMLTSLNSDMNQILGFELGANDYVLKTTPPSVLLARLRAHLRQAASSPD 125

Query: 125 RA-------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + G +++    R   + GE   L   +  +L  L ++ G+ + + 
Sbjct: 126 TPVVAAPTPKGARILDFGSLQIDHMNRTVRLCGETIALSTGDFDLLWELASHAGEVLTRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   + G+      +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 186 DLLYKLRGVH-YDGLDRSVDVAISRLRKKLDDDTADPKKIKTIRHKGYLF 234


>gi|226324201|ref|ZP_03799719.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758]
 gi|225207750|gb|EEG90104.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758]
          Length = 220

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KLNMEELHRYDLILLDIM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWEE 220


>gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
 gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +    + +  + L +     +  ++  L   GE  L 
Sbjct: 8   LIVDDDLRLRSLLERYLTEQGFQIRTAANADQMDRLLTRESIHLIVLDLML--PGEDGLS 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R  ++ +P+I ++        +   + G DD ++KP + RE        +  +  
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQAN 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       N     G  ++    R+   + E  PL   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSQDNAIISFGKFKLNLGTREMFHEEEHMPLTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            S   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 186 MSLARGR-EYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGYVF 232


>gi|210622429|ref|ZP_03293161.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
 gi|210154245|gb|EEA85251.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 20/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G ++    +      +  +    ++ ++          +
Sbjct: 6   ILVVEDEKEIAEAVEIYLLNQGYNVFKAFNGMEGLKVLENEEIHLAIVDIM--MPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------------HHR 106
                 R +   P+I +S        +   + G DD V KP                + +
Sbjct: 64  TFTMKARENHNFPIIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            +  + A+      V+ N    G + +  D ++  V G    L   E +IL  L+ N G+
Sbjct: 124 YMNIQKASSTEVEAVNENIYTIGGLELNDDTKEVSVDGNPVRLTPIEFKILGLLIKNPGR 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
                +I+  ++   + A+  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 VFPAEEIYERVWN--EAAINTDTVMVHVRNIREKIELDPKNPRYLKVVWGVGYKIEK 238


>gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         D+G                   + ++  ++  L   G +  
Sbjct: 4   ILIAEDEPHIAAFLDKKLRDNGFITTIAEDGYEALNQVRHEQYNLLILDLGL--PGIEGT 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E+   +R    ++P+I ++    +   +   + G +D V KP         I  ++    
Sbjct: 62  EVLEELRGQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQPS 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    + G I +    R   V      L   E  +L+ LM +  + +++ QI + 
Sbjct: 122 TPEPKAERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQILNY 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ +I  LRKKL      + +++ R +GY +
Sbjct: 182 VWG-YDYDSSSNIVDVYIGYLRKKL----NRNLIETVRSVGYRL 220


>gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 95/219 (43%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +      E  + +      D+  ++  L        
Sbjct: 3   ILVVEDDLAIGDLIEINLQMSGYEVLKAIDGEEAKEVFDKEDIDLVLLDVML--PKIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I     +P+I ++   S+   +     G DD + KP  + E+LAR+  + RR   
Sbjct: 61  QLIKYI-KKKDIPVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRYNK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   I V  + R  ++ G+   L  +E ++L   + N+   +++ QI + ++G +
Sbjct: 120 DDKIIKFKNIEVDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG-Y 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E   V+ H+++LR+KL  +     + +   +GY +
Sbjct: 179 DYVGETRTVDIHVNRLREKLDLRNN---IKTIFKVGYRL 214


>gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   V +            ++  ++ +    L      D+  ++  L        
Sbjct: 3   ILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLL--PDMDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R   Q +P++ ++    +   ++  D G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  DICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRREG 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S             +             L R+E  +LE+LM N  + +++T I   I+ 
Sbjct: 121 PSKTSQLKFLDITLDTINHQVWRGERKINLTRKEYLLLEFLMHNPRQVISRTMIAEHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV++ ++  +R+KL  +   D + + R  GY +
Sbjct: 180 ESDAENLSNVIDVYVRYVRRKLCEQGESDVIHTIRGFGYQL 220


>gi|294084834|ref|YP_003551594.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664409|gb|ADE39510.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +      +   +G  ++ +N  E      +    +++ ++          +
Sbjct: 5   IALVDDDQNILTSVSLMLESEGFDVDCYNDGEAALQGMARQPVELAVLDI--KMPRMDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115
           EL + IR +SQ+P+I ++           F  G DD + KP   R        + R A  
Sbjct: 63  ELLQKIRKNSQLPVIFLTSKDDELDEALGFGMGADDYITKPFSQRLLLARIRAVLRRATE 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N    G + +  D      +GE   L   E  IL+ L +  G    + Q+  
Sbjct: 123 GVMDTAGPNVIHQGDLVMDPDRHLCSWKGEEVKLTVTEFLILQALASRPGMVKNRDQLMD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           A YG     +++  ++SHI +LR+K+R     FD +++   +GY 
Sbjct: 183 AAYGES-IFLDDRTIDSHIKRLRRKIRAHDNAFDGIETLYGIGYK 226


>gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+    +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEYEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +                 R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|326443958|ref|ZP_08218692.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 5   LVVDDEPQIVRALVINLKARKYEVDAAPDGATALQLAAARHPDVVVLDLGL--PDMDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 63  VIKGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     ET    V    +     G    L   E  +LE L+ N G+ V++ Q+   
Sbjct: 123 GGGDDDVVIVETESFTVDLAAKKVNRDGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 VWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFITEPGMGYRFE 227


>gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++           G +++  ++ E      S+    +  ++  L       L
Sbjct: 3   ILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIAL--PKMDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S+VP++ ++   +L   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++   G +R   +            L  RE  + E L++ +G+ V K Q+   ++G
Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E ++ ++RKKL        + + R +GY ++ 
Sbjct: 181 WGD-DGGSNAIEVYVHRMRKKLEPYNIT--IRTVRGMGYLLEK 220


>gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    S         +A  D+  ++  L        
Sbjct: 4   ILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGL--PDMDGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R    +P+I +S        ++  D G +D V KP    E++ARV A+ R    
Sbjct: 62  EIISAVRQDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLRPHLP 121

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       ++  D       G    L R+E  +L +   +    +    I   ++G
Sbjct: 122 KEGGQVVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                 +   +  ++++LR+KL +       + +   +GY +
Sbjct: 182 PAHVD-DTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRL 222


>gi|49475273|ref|YP_033314.1| two-component response regulator [Bartonella henselae str.
           Houston-1]
 gi|49238079|emb|CAF27286.1| Two-component response regulator [Bartonella henselae str.
           Houston-1]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S++     E    L  +   DV  ++  L+ +    L
Sbjct: 3   ILVIEDDHETGRYLEKAFEEAGHSVDVAYDGETGYALAETENYDVMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P + +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIIAELRAKGNETPALILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +       L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLYTIRGAGYML 221


>gi|331701207|ref|YP_004398166.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128550|gb|AEB73103.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 242

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +G  +             +   +    I   L    +  +
Sbjct: 3   LLMIEDNKSVSEMMQMFFQKEGWDVTIAYDGIEAMDKFNEDPDSWDMITLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA SQ  P+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR  
Sbjct: 63  EVAKEIRAKSQTVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-------------GEVFPLPRRERRILEYLMANRGKR 167
                               +                 +  L  +E  +L+ L     + 
Sbjct: 123 TETEEESEDEKAKNVFDVQTDHFKLNSSTREVYLDDKRISDLTPKEFELLKTLAQKPRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  ++   +E  V++H+ KLR+K+  K+G   + +   +GY  D
Sbjct: 183 FSREQLLETVW-NYEYYGDERTVDAHVKKLRQKIE-KVGTQVIQTVWGVGYKFD 234


>gi|300742621|ref|ZP_07072642.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
 gi|300381806|gb|EFJ78368.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++      G   LE
Sbjct: 26  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIM--MPGFDGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 84  LLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 143

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 144 AAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLRYLMENAKRVVSKSQILDNVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ +      + + R  GY I
Sbjct: 204 -NYDFGGQANIVELYISYLRKKI-DVGREPMIHTVRGAGYVI 243


>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
 gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +      G +++          L ++ + D+  ++  L   G    
Sbjct: 3   ILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
           ++   +R    S+ P+I ++   +L   L   +SG DD + KP    E++AR+ A+  R 
Sbjct: 61  QVCERLRRDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRRT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + + G +    D  +    G+   L     ++L  LM      V +  + +A++
Sbjct: 121 QGSRKRQLQVGDLIYDLDTLNVSRAGKQLRLNPIGYKLLAILMQKSPAVVRREFLENALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G  D+  E + + SHI +LR+ L        + +   +GY +  N
Sbjct: 181 G--DDLPESDSLRSHIHQLRQALDKPFDKPLLHTIHGVGYRLAEN 223


>gi|99082281|ref|YP_614435.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038561|gb|ABF65173.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  +Q+P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           VA             E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VATDEVGTAPETKVMERGHLRMDPLRHAVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADADFAAIETLYGIGYRYNE 232


>gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++           L  + + D+  ++      G   +
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENNQVDLMIVDVM--MPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
             N  +    +V+  G                   L   E  IL  L+ N GK  +  +I
Sbjct: 122 LGNMNQQTAGQVYKCGGLAINDDNKEVTVDGELIKLTPIEYNILLLLVKNAGKVFSIDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEK 230


>gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         D G  ++     E   +L  +   D   ++  L       L 
Sbjct: 2   LIVEDDRDLNRQLCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGL--PQMDGLS 59

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    R     +P++ ++        +   D+G DD V KP H  E+LARV A+ RR   
Sbjct: 60  VLERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAG 119

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +    V  +        G    L   E R+L YLM ++G+ +++T++   +Y  
Sbjct: 120 LASNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQ 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK     G   +++ R LGY +
Sbjct: 180 -DFDRDSNTIEVFVGRLRKK----FGSSLIETVRGLGYRL 214


>gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580]
 gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
 gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 76/219 (34%), Gaps = 8/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + D           S     + +    L      D+  ++            
Sbjct: 4   LLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLIKMRNFDLVILDIM--MPEMDGWT 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  + +P+I ++        +   + G DD + KP   + +         R    
Sbjct: 60  VCKEIRRLTSIPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVL-LAKIEAVLRRTRR 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +      +          V      +   E  +L  L+ +  + +++ Q+   I+G F+
Sbjct: 119 FHEIRFRGLIWNKQHHTLHVNHREISITPSEFDLLGTLLDHMDQVLSRDQLIENIWG-FN 177

Query: 183 EAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
             +E   ++SH+  LR +L+       D + +   +GY 
Sbjct: 178 SDIEPRTIDSHMRNLRHRLKKAGFPVEDHLRTVYGVGYK 216


>gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G +++ F   +  +    +A  D   ++  L       L
Sbjct: 3   ILLVEDDRLIGDGIKAGLSKMGFNVDWFTDGKTGQAALYTAPYDAVVLDLTL--PEIDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R  R      P++ ++   +L   ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  EILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +        ++GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++         +G  +    + E       +   D+  ++           E
Sbjct: 8   LIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLM--MPILSGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120
           + +IIR  S++P+I ++        ++  D G DD + KP    E+ AR+      ++  
Sbjct: 66  VCKIIRKTSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKKEF 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N      +++  D +      E   L ++E  I+   + N+   +++ +I   I+G 
Sbjct: 126 KTHNTITYENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   ++ +V+ +I+ LRKK+ NK     + + R  GY +
Sbjct: 185 YDFEGKDKIVDVYINLLRKKIENKNE-KYIHTVRGFGYIL 223


>gi|260904787|ref|ZP_05913109.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Brevibacterium
           linens BL2]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G   E          L  +   D+  ++  L   G    
Sbjct: 4   ILVVEDEARISAFIAKGLKAAGFVTEIAADGITGRDLALTGDFDLLVLDIGL--PGLDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R     +P++ ++   +   T+   +SG  D + KP    E+    R+      
Sbjct: 62  SVLSQLRKDRPDLPVLVLTARDNADDTIFALESGAADYMIKPFRFGELLARIRLRLKETA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G +R+    R   V  ++  L  RE  + E L+ NRG  +++ Q+ S ++
Sbjct: 122 TEAPQTELVRGDVRIDLLKRQVWVADKIIDLSARELSLAEILLQNRGNVLSREQLLSHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD     NVV+ ++  LRKKL    G D V + R  GY +D
Sbjct: 182 G-FDFDPGSNVVDVYVGYLRKKL----GSDFVTTVRGFGYRVD 219


>gi|260597818|ref|YP_003210389.1| DNA-binding transcriptional regulator RstA [Cronobacter turicensis
           z3032]
 gi|260216995|emb|CBA30659.1| Transcriptional regulatory protein rstA [Cronobacter turicensis
           z3032]
          Length = 261

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V ++D   V +   A  G   + +   +  +  E +      D+  ++  L   G+  +
Sbjct: 24  IVFVEDDPEVGELIAAYLGRHDIDVVVESRGDRAEAVIERENPDLVLLDIML--PGKDGM 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R +RA    P++ ++   S    +   + G  D + K      +LAR+    R+   
Sbjct: 82  TLCRDLRARWPGPVVLLTSLDSDMNHILSLEMGASDYILKTTPPAVLLARLRLHLRQHMA 141

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +     G + +    R   + GE   L   +  +L  L  + G+ + 
Sbjct: 142 APGPTDSAPTLQPHKALRFGTLCIDPLNRQVTLVGEQVALSTADFDLLWELATHAGQIMD 201

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +   + G+      +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 202 RDALLKNLRGVT-YDGLDRSVDVAISRLRKKLNDSATEPYRIKTVRNKGYLF 252


>gi|260102559|ref|ZP_05752796.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083634|gb|EEW67754.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 15/230 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   V +     F  +G   +          +     +    I   L    +  +++ 
Sbjct: 2   VEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGIQVA 61

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREILAR 111
           + +RA S   P+I ++   S    +     G D+ V KP             H R ++  
Sbjct: 62  KEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMMEE 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                                             V  L  +E  +L  +     +  ++ 
Sbjct: 122 DVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQVFSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 182 QLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 229


>gi|239831231|ref|ZP_04679560.1| Transcriptional regulatory protein pmrA [Ochrobactrum intermedium
           LMG 3301]
 gi|239823498|gb|EEQ95066.1| Transcriptional regulatory protein pmrA [Ochrobactrum intermedium
           LMG 3301]
          Length = 221

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG     G  G +++  ++    E   ++   +   ++  L       L
Sbjct: 3   ILVVEDDTILLDGLTVGLGLAGFTVDAVSTCCDAEAALAAQNYNAVVLDLML--PDGSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    + P++ ++    +   +   D+G DD V KP    E+ ARV A+ RR  
Sbjct: 61  DILKSMRRGRDETPVLLLTARDQVPERIAGLDAGADDYVGKPFDLHELAARVRAVARRGA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E   + +          GE   L RRE  IL  LM       +K+ +  A+YG
Sbjct: 121 GRANALLEWRGVELDPAEMSVRFHGEPVRLTRREFSILRTLMERPAATFSKSSLEEALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE HI  LR KL    G D +++ R +GY +
Sbjct: 181 -WQEEVESNAVEVHIHHLRSKL----GSDYIETVRGVGYRL 216


>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  S E      S A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMI--PGIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +         V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|254390525|ref|ZP_05005740.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|197704227|gb|EDY50039.1| response regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++          L ++   DV  ++  L       +E
Sbjct: 2   LVVDDEPQIVRALVINLKARKYEVDAAPDGATALQLAAARHPDVVVLDLGL--PDMDGVE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +  
Sbjct: 60  VIKGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 119

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     ET    V    +     G    L   E  +LE L+ N G+ V++ Q+   
Sbjct: 120 GGGDDDVVIVETESFTVDLAAKKVNRDGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 180 VWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFITEPGMGYRFE 224


>gi|170760124|ref|YP_001787315.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|237795352|ref|YP_002862904.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|169407113|gb|ACA55524.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229262869|gb|ACQ53902.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D         +  ++           +  +    V  ++          +
Sbjct: 7   LVVDDEKEIRDAIEIYLRSIENTNIIKAADGLDALDVLENNEIHVIILDIM--MPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
                IR  + +P+I +S        +   + G DD V KP +        + ++     
Sbjct: 65  RTCMKIREKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQLRRYTN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +        V G+   L   E  IL  L  N G+    +QI
Sbjct: 125 LGNFPKTADVDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSSQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++        EN V  HI +LRKK+  +      +     +GY ID 
Sbjct: 185 YEYVWNEPSFK-TENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233


>gi|83644592|ref|YP_433027.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632635|gb|ABC28602.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 264

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G+ +    +         + + D+  ++  L   GE  L
Sbjct: 28  ILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLML--PGEDGL 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
            + R +R     P++ ++        +   + G DD + KP+  R +LAR+         
Sbjct: 86  SICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKE 145

Query: 114 --------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                    I  +      R     + +    R+  ++ +   L   E  +L  L ++ G
Sbjct: 146 QGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAG 205

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + +++ +IF+A+ G+ +   ++  ++  +S++R K+ +       + + R  GY  
Sbjct: 206 RVLSREEIFTALRGI-EYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLF 260


>gi|99078349|ref|YP_611607.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035487|gb|ABF62345.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 238

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       + G  +    + +    + +    DV  ++      G   L
Sbjct: 10  ILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDIN--MPGTDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----------HREILA 110
              R +R +S +P+I +S    +   +   + G DD + KP+             R    
Sbjct: 68  TALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQGF 127

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 +R +++               +     GE   +   E  +L     NRG+ + +
Sbjct: 128 AGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRVLNR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+    +    E  +   ++  IS+LR+K+  N    + + + R +GY  D
Sbjct: 188 DQLLEQAHDRGWEHFD-RSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIFD 238


>gi|330941199|gb|EGH44073.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG ++    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + RE++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLCALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + N       +                +    V  L   E +IL  L+    K   + ++
Sbjct: 124 NGNNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVDNVLVTVRSVGYRF 228


>gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ DG        G  ++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSL--PGMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R    + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRDWREQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRAS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +          + G       G    L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 121 GQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 NWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|256371881|ref|YP_003109705.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008465|gb|ACU54032.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D     F  +   +   ++ E       +    +  ++  L G+    LE
Sbjct: 6   LVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAFDA-SVTLVILDLNLPGR-LDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           + R IR  S VP+I +S   +    +   + G DD V KP   RE    +  +       
Sbjct: 64  VARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERRVEAN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        +      R     G    L  RE  +L Y  A+    + + ++   ++G
Sbjct: 124 PSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELLDGVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   ++  V+ H+ +LRKKL    G   + +   +GY  D
Sbjct: 184 -PEWYGDDRTVDVHVLQLRKKL---GGAIAISTVWGVGYRFD 221


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +   +             DV  ++  L       +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLML--PELNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +  FD G DD + KP          R +L R+  
Sbjct: 62  EVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + K S        + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YDSEVETNVVDVYIRYLRNKINRPGENSYIQTVRGTGYVM 226


>gi|197121352|ref|YP_002133303.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171201|gb|ACG72174.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V+    A     G  +E   ++   E L      DV  ++  L       ++
Sbjct: 9   LVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGL--PDGDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L R +R  ++ P+I +S     +  +   D+G DD + KP    E+LAR+       +  
Sbjct: 67  LARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARLRVALRHAQAP 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+R+    R+    G    L   E R+L  L  N GK +   QI   ++G
Sbjct: 127 PDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILREVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               A E + V   +++LRKKL ++      + ++  +GY +
Sbjct: 187 PN--ATEAHYVRVQVAELRKKLEDEPARPRLLMTEPGVGYRL 226


>gi|153938445|ref|YP_001391244.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168180510|ref|ZP_02615174.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|152934341|gb|ABS39839.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182668847|gb|EDT80825.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295319280|gb|ADF99657.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D         + +++           +  +    V  ++          +
Sbjct: 7   LVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIM--MPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
                IR  + +P+I +S        +   + G DD + KP +        + ++     
Sbjct: 65  RTCMKIRERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQLRRYTN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    ++      + +        V G+   L   E  IL  L  N G+    +QI
Sbjct: 125 LGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSSQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++        EN V  HI +LRKK+  +      +     +GY ID 
Sbjct: 185 YEYVWNEPSFK-TENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233


>gi|149178895|ref|ZP_01857473.1| phosphate regulon response regulator PhoB [Planctomyces maris DSM
           8797]
 gi|148842234|gb|EDL56619.1| phosphate regulon response regulator PhoB [Planctomyces maris DSM
           8797]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 7/220 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLEL 63
           I+D   + +        +                      D+  ++  L    G +V   
Sbjct: 2   IEDDRSLSEVLAYNLRQEKYDAVVALDGMDGLRQAQLKTPDLIILDLMLPQMDGLEVCRR 61

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRLK 120
            R     S V ++ ++        +  F  G DD V KP   +   E +  +        
Sbjct: 62  LRSDPVTSNVLILMLTAKSEETDQVVGFTLGADDYVTKPFSVKILLERIKALLRRRESNG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++   +  + +        +      L R E  +LE L+   G+  ++ ++  A  G 
Sbjct: 122 EASDTIVSQGVMIDRRRHRVMIDDVPISLTRSEFELLEALVRQPGRVFSRAELIDAALG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  ++ HI  LR+KL      + +++ R +GY  
Sbjct: 181 DDALVLERTIDVHIRALRQKLEKHS--ELIETVRGVGYRF 218


>gi|52140505|ref|YP_086323.1| response regulator [Bacillus cereus E33L]
 gi|51973974|gb|AAU15524.1| response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + E       S   D+  ++  L        
Sbjct: 5   ILVVDDEPDILTFIEDSLVMEGYEVRSALNGEEALKQLDS-SVDLIILDVML--PDMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R     P++ +S   S ++ ++    G DD ++KP   +E+ AR+ A  RR   
Sbjct: 62  KVCEKMRESYPCPILFLSADGSERSRIEGLLIGGDDYISKPFSLKELKARIIANLRRTTE 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +   +R           +  +  E     ++E  +++ L  + G+ + K Q+F  
Sbjct: 122 LQMMGQKNLLRYGDLVIDLQSYEILLGKEKIHFTKKEYEVVKMLALHAGQVLTKEQLFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           I+G +D   + + V  HI K+R KL      +  + +   +GY 
Sbjct: 182 IWG-YDSESDVSTVVEHIKKIRTKLSVYDREYTYIQTVWGIGYK 224


>gi|77465251|ref|YP_354754.1| two-component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464714|ref|YP_001045827.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77389669|gb|ABA80853.1| Two-component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126106525|gb|ABN79055.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D     D        +G S++            +    D+  ++      G   L
Sbjct: 3   ILLAEDDRQTADYLRQGLLAEGYSVDHVPDGRDALVQATLQPYDLLVVDRM--MPGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A  + P++ ++    +   ++   +G DD + KP    E+ AR+AA+ RR  
Sbjct: 61  SLVKALRSAQIKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPA 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++    +   +      +  R     G    L  RE R+LE+LM   G+   +T +  A+
Sbjct: 121 LAEGARDLLRVGDLTLDTVRRTVSRGGTEIDLQPREFRLLEHLMRAAGRVQTRTMLLEAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F      +VVE+H+S+LR K+        + + R  GY +
Sbjct: 181 WD-FHFDPGTSVVETHMSRLRAKIDRPFDKPLLHTVRGAGYML 222


>gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D             + G   +     E           DV  ++  L    G  V
Sbjct: 3   ILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRRDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +E  R   A    P++ +S    +   +    +G DD + KP    E    +  +    +
Sbjct: 63  IEALRK--AGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPK 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + +          G+  PL  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 ASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GYSI
Sbjct: 181 W-EYHFDPQTNVIDVHISRLRAKIDKDFDRPLLHTIRGAGYSI 222


>gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8]
 gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter
           xylosoxidans A8]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +  +++        E    +   D+  ++  L       L
Sbjct: 3   ILLVEDDLMIGESVLDFLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGL--PKRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +RA     P++  +   ++   +   D+G DD V KP    E+LAR+ A I R  
Sbjct: 61  SLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +        V G    L  RE  +LE L+A  G   ++ Q+   +Y 
Sbjct: 121 GRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  +  N VE +I  LRKKL    G + + + R +GY I
Sbjct: 181 WKES-ISSNAVEVYIHGLRKKL----GPNLIQNVRGVGYVI 216


>gi|258654798|ref|YP_003203954.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558023|gb|ACV80965.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                R D+  ++  L       LE
Sbjct: 30  LVVDDEQSLSELVSLALRYEGWEVRSAPDGLSAIAAARDFRPDLVVLDVML--PDIDGLE 87

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   ++P++ ++    +   +    +G DD V KP    E++ R+ A+ RR  +
Sbjct: 88  VLRRLRADIERMPVLFLTAKDDVSDRIAGLTAGGDDYVTKPFSIEELVLRLRALLRRSHL 147

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +  +        D R+     ++  L   E  +L +LM N  + ++K QI   +
Sbjct: 148 ALTTDSSTIVVGDLVLDEDSREVRRGDDLISLTATEFELLRFLMRNPKRVMSKAQILDRV 207

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 208 W-NYDFGGQANIVELYISYLRKKI-DAGREPMIHTMRGFGYVL 248


>gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G      NS      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVGFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|225567971|ref|ZP_03776996.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM
           15053]
 gi|225163259|gb|EEG75878.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +        S              +  ++  L        
Sbjct: 13  ILIVEDDKAIADAVAYTLEKEEFKFIIAGSAAEALPYIGRKDIGLYLLDVML--PDGTGY 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           ++ R I+ +  VP+I ++        +   D G DD + KP   RE+++R          
Sbjct: 71  DICRKIKRYHNVPVIFLTACDEEANVVMGLDIGADDYIVKPFRIRELISRIRSVLRRYDS 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+     +    G IRV +       + E   L   E ++L +L+ + G+ V + Q+ S 
Sbjct: 131 RQDIRPASVYCAGDIRVLTAEGKVYCKEEEICLSALEYKLLLFLIRHEGQIVTREQLLSH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           IY +  E V +N +  +I +LR KL     G + + + R LGY+I
Sbjct: 191 IYDIAGEYVNDNTLTVYIKRLRDKLETDTEGPEIIRTVRGLGYTI 235


>gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Herminiimonas
           arsenicoxydans]
 gi|133738671|emb|CAL61716.1| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  N+      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVML--PDIDGW 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +  A + VP + ++    +   +   + G DD V KP    E+LARV        
Sbjct: 61  KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE+L+ ++G+ + ++ I S I+
Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DI-NFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLE 222


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E      S    DV  ++           
Sbjct: 3   ILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVM--MPKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +RA+     ++ ++    +   +   D G DD + KP   RE++AR+ A + R+ 
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGYVL 220


>gi|24379577|ref|NP_721532.1| putative response regulator; homolog of RumR and ScnR
           [Streptococcus mutans UA159]
 gi|24377523|gb|AAN58838.1|AE014951_9 putative response regulator [Streptococcus mutans UA159]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +         G + L G  S +           D++ ++  L       
Sbjct: 8   ILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKRSFDLAILDIML--PDGSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S +P++ +S    ++     F+ G DD + KP   +E+  R+ +I +R  
Sbjct: 66  FEVLREIRKTSTIPVLFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     P    +  +    +GE    L  +E  IL+ L  N+ + V   Q+   ++G
Sbjct: 126 PEKDDTLILPTCQVNFSQALITKGELEIQLTAKEYSILKVLYNNQNRIVTFDQLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           L      EN + +HI K+R+K+  N    + + + + LGY +
Sbjct: 186 L-QYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKL 226


>gi|78048520|ref|YP_364695.1| putative two-component system regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289668239|ref|ZP_06489314.1| putative two-component system regulatory protein [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294625107|ref|ZP_06703752.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665487|ref|ZP_06730771.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325926516|ref|ZP_08187833.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78036950|emb|CAJ24648.1| putative two-component system regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292600571|gb|EFF44663.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604741|gb|EFF48108.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325543088|gb|EGD14534.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 80/226 (35%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D +       A    DG  +      E    L      D+  ++  L       +E
Sbjct: 7   LLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I ++        L     G DD V KP   +E++ARV A+ RR    
Sbjct: 65  VLSTIRRAGDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVAV 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQIF 174
               E       S      V              L   E  +L  L+    K   ++++ 
Sbjct: 125 RAPGEPLQHGRLSVDPAAVVASVQHENGDSVALDLTPTEFNLLALLLKTPFKAFTRSELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L D    E VV+SHI  LR+KL        + + R +GY  
Sbjct: 185 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 228


>gi|303232881|ref|ZP_07319565.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481071|gb|EFL44147.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   +++  +    +    ++ F+          +    +  ++  L    G  +
Sbjct: 4   IYVVEDDVSIQEIELIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNAI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113
               R     S +P+I ++   +    +   D+G DD + KP    E       +L R  
Sbjct: 64  TRTLRSNAQWSHIPIIMLTAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRAQ 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +      +    G I +        V  E   L  +E  +L YLM + G    +  +
Sbjct: 124 TPAQMPADKYSMCRVGAIMLDPARHFVCVHDEPVNLTHKEYDLLHYLMLHEGLVFTRDML 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++G FD   E   V+ HI  LR+KL +      V + R +GY +  N
Sbjct: 184 MQAVWG-FDYEGESRTVDMHIKTLRQKLGDAAC--YVQTVRGVGYCVKSN 230


>gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ +         G  +E             S R     ++      G     
Sbjct: 15  LVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVM--MPGIDGFG 72

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           L   +RA     P++ ++    +Q  +     G DD + KP    E++AR       A +
Sbjct: 73  LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRRAGH 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++R     I +  D  +    G    L   E  +L Y M N G  ++K +I   
Sbjct: 133 GAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  VVE+++S LRKK+ +      + + R +GY +
Sbjct: 193 VW-RYDFGGEVGVVETYVSYLRKKV-DTGERRLIHTLRGVGYVM 234


>gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
 gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV------SAIEAFLIG 55
            ++I+D   V          +G   E          L     +        S +   ++ 
Sbjct: 3   ILVIEDDPRVHGFLQRGLKAEGYQTELAEDGATGLGLARELHKAFRDNAEKSLVILDIMM 62

Query: 56  KGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR--- 111
                LE+ + +RA     P++ ++        +    +G DD + KP    E+LAR   
Sbjct: 63  PEMNGLEVCQQLRAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELLARIEG 122

Query: 112 --VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                +    K    +     + +  D        E   L  +E  +LE +M + G+  +
Sbjct: 123 LARRGLVAPDKQRAKQLSVADLHLDLDSMRVFRGDEEISLTAKELALLELMMRSVGRLFS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +I S ++GL +E    N+V+ +I +LR K+        + ++R LGY ++
Sbjct: 183 RERILSNVWGL-NEDPLTNIVDVYIRRLRNKIDTDNKPQLIHTQRGLGYRLE 233


>gi|317056546|ref|YP_004105013.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448815|gb|ADU22379.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++         G  ++ F               D+  ++  L   G+  
Sbjct: 2   LIYIVEDDPSIRELESYALEKSGYIVKSFEETTDFYDSMKVRTPDLILLDIML--PGDDG 59

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R +    A S++P+I +S   +    +   D G DD + KP    E+++RV A  R
Sbjct: 60  LTVLRNMRNEPAFSKIPIILVSAKTTELDRVKGLDLGADDYICKPFSVMEMVSRVKARLR 119

Query: 118 RLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + V++             D R     G    L  +E  +L+  +++    + +  I   
Sbjct: 120 SIPVNSQTVLCFEEIRLSDDTRTVTAGGSTVELTYKEYELLKMFLSSPKIVLRRDDILDR 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G          ++ HI  LR KL        + + R +GY +D +
Sbjct: 180 IWG---HDSTGRTLDVHIRTLRGKLDEYG--KYIKTVRNVGYKLDKD 221


>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++   +    +      +  +    +  I+          +
Sbjct: 3   ILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEALLVFDNYEIHLVIIDIM--MPVMDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
                IR    +P++ +S        +   + G DD V KP +  E++A      R    
Sbjct: 61  RATMKIREKYNIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRRYVS 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   +TG + +  D ++ ++  +   L   E +IL++L  N GK  +  QI+ 
Sbjct: 121 LGSFVAQSGVFKTGGLIIDDDAKEVKIDDKPVKLTPVEYKILKFLCENAGKVFSIDQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++     + E N V  HI ++R+K+  N      +     +GY I+ 
Sbjct: 181 QVWNEPSFSPE-NTVAVHIRRIREKIEINPKDPKYLKVVWGIGYKIEK 227


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLG------FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+     +            +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
 gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      L   +G  +           L      D+  ++          L 
Sbjct: 13  MVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVM--MPRLNGLS 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               +R   ++P+I +S        +     G DD V KP +  E++ARV A  RR +  
Sbjct: 71  ALMKLREKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 130

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                                  R   V+GE   L   E +ILE LM + G+  +  QI+
Sbjct: 131 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++        EN V  HI  +R+K+  +      V     +GY ++ 
Sbjct: 191 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKMEK 239


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G +++     E   +L SS   D   ++  L       L 
Sbjct: 4   LIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGL--PEVDGLT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R  +   ++P++ ++   S    +   D+G DD + KP    E++AR+ A I R   
Sbjct: 62  VLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRASG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G +R+ +      + GE   L  +E ++L YLM ++GK V++T++   IY  
Sbjct: 122 NASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  ++++RKKL    G D + + R LGY+++
Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYALN 217


>gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO]
 gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++  Y ++    G S+    + E       + R ++   +           
Sbjct: 4   ILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIM--MPKMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+     P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 62  DLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +          D            LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSSLIIGQTKLELDAYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEKTEDFQII-TVRGLGYK 219


>gi|269794181|ref|YP_003313636.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096366|gb|ACZ20802.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G ++    + +      S A  D+  ++  L       LE
Sbjct: 5   LLAEDDPAIAEPLARALSREGYNVVVQGTGQGAIDNASVA--DLVVLDLGL--PDMDGLE 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IR      P++ ++        +   D+G DD V KP    E    +  +      
Sbjct: 61  VARAIRGLGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       ++V               L  +E  +L  L+   G  V +  +   ++
Sbjct: 121 DPTEAEELHAQDVKVDVAAHRAFQGERELHLTTKEFELLRVLVQGAGTVVVRDALMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  +       ++ H+S LR+KL +       + + R LG+  +
Sbjct: 181 G-SEPIGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGLGFRFE 223


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 6   LVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +    P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 64  ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +         + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  
Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSF 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            DE   + V+ SHI  LRKK+        + + R +GY 
Sbjct: 184 DDEVFSD-VLRSHIKNLRKKVDKGFKRKIIHTVRGIGYV 221


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 4   LVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +    P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 62  ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +         + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  
Sbjct: 122 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            DE   + V+ SHI  LRKK+        + + R +GY 
Sbjct: 182 DDEVFSD-VLRSHIKNLRKKVDKGFKRKIIHTVRGIGYV 219


>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|317483795|ref|ZP_07942735.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924898|gb|EFV46044.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A      +++E              A  D+  ++  L   GE  L
Sbjct: 7   LLVVDDDADIRELLSAYLARYDMTVETAADGAGLFEKLDHAHFDLIILDIML--PGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------I 115
            L R +R  S +P+I ++   S    +   + G DD V KP   RE+LAR+         
Sbjct: 65  SLCRRLRGTSAIPVIFLTSLDSSTDRVVGLELGADDYVVKPFDPRELLARIRTVLRRASD 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +    ++        +    R+     E   L     R+L   +      +++  +  
Sbjct: 125 KGQAAAQSDIRRFAGWTLNVRSRELSQGDERIALSDAMYRLLLVFLDEPFAVLSREYLLR 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G  D  V +  V+  +S+LR  L++      + + R  GY +
Sbjct: 185 QTQGR-DADVFDRSVDIQVSRLRGVLKDTGTSKIIKTVRGGGYML 228


>gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 221

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A +  G        G +++   S E    L+ +    +  ++  L    G +V
Sbjct: 3   ILIVEDDAALARGVTGALKLAGYAVDHVASGEEAVRLERAEPYGLVVLDLGLPDLSGFEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L L R     S VP++ ++   ++   +   D G DD + KP    E  ARV A + R  
Sbjct: 63  LTLIRR--RGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALMRRGQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+R         + G V  L +RE  +LE L+   GK V K ++   ++G
Sbjct: 121 GTPIPELACGPLRYDRSTATVTLNGRVLDLRKRELAVLEGLITRAGKVVPKDRLAGEVFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FDE V  N +E ++++LRKKL        + + R LGY ++
Sbjct: 181 -FDEPVAPNAIELYVARLRKKLEPDGPQ--IRTIRGLGYLME 219


>gi|258545772|ref|ZP_05706006.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258519017|gb|EEV87876.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D        +   +   ++         + R D   ++  L        
Sbjct: 4   ILLIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGL--PDTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     PLI +S        +   + G DD   KP  +RE+++R+       + 
Sbjct: 62  ELCRRIRQQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRI---KAVCRR 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN        +     +     G    L R E R+L +L+A+ G+   + Q+ + ++   
Sbjct: 119 SNETETASVWQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWDHP 178

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           D  ++   V+SHI  LR+KLR      DP+ ++R  GY ++
Sbjct: 179 DH-IDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHLE 218


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++           
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVM--MPEMDGF 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + I     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGL--PTMDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G+   L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIACGPVRLDTKSSKVTVSGKALKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GLDMIETVRGLGYRI 216


>gi|184158146|ref|YP_001846485.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332872696|ref|ZP_08440663.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209740|gb|ACC57138.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|310756669|gb|ADP20467.1| AdeR [Acinetobacter baumannii]
 gi|310756672|gb|ADP20469.1| AdeR [Acinetobacter baumannii]
 gi|310756675|gb|ADP20471.1| AdeR [Acinetobacter baumannii]
 gi|310756678|gb|ADP20473.1| AdeR [Acinetobacter baumannii]
 gi|310756681|gb|ADP20475.1| AdeR [Acinetobacter baumannii]
 gi|310756684|gb|ADP20477.1| AdeR [Acinetobacter baumannii]
 gi|310756687|gb|ADP20479.1| AdeR [Acinetobacter baumannii]
 gi|310756690|gb|ADP20481.1| AdeR [Acinetobacter baumannii]
 gi|310756693|gb|ADP20483.1| AdeR [Acinetobacter baumannii]
 gi|310756696|gb|ADP20485.1| AdeR [Acinetobacter baumannii]
 gi|310756699|gb|ADP20487.1| AdeR [Acinetobacter baumannii]
 gi|310756702|gb|ADP20489.1| AdeR [Acinetobacter baumannii]
 gi|310756705|gb|ADP20491.1| AdeR [Acinetobacter baumannii]
 gi|310756708|gb|ADP20493.1| AdeR [Acinetobacter baumannii]
 gi|310756714|gb|ADP20497.1| AdeR [Acinetobacter baumannii]
 gi|322508464|gb|ADX03918.1| AdeR [Acinetobacter baumannii 1656-2]
 gi|323518087|gb|ADX92468.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332739090|gb|EGJ69950.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N       +    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKVTNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  +             ++   D+  ++  L   G   LE
Sbjct: 6   LVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLML--PGVDGLE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
           + R +RA    +P+I ++        +     G DD ++KP   RE++ RV         
Sbjct: 64  VCRRLRAQPGGIPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGG 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + V +  R   + G    L  RE  +L YLM +  +   + ++   +
Sbjct: 124 PRAAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPVRAFRRAELLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+  +      + +   +GY  +
Sbjct: 184 WGWN--FGDQSTVTVHVRRLREKVEADPANPRRIVTVWGIGYRYE 226


>gi|150397445|ref|YP_001327912.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150028960|gb|ABR61077.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G  +      +           D+  ++      GE  +
Sbjct: 14  LLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R    VP+I ++      + ++  ++G DD + KP   RE++ R+  I RR + 
Sbjct: 72  ALTQSLRQIKSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRRNQP 131

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +           P       ++     +   L  RE+ I+       G+ + + ++    
Sbjct: 132 TQTHKVDQVIFGPYTFSVVRKELRRGADHIRLTDREQEIMTLFSQRAGETIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 189 --GDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRL 230


>gi|229180716|ref|ZP_04308054.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228602694|gb|EEK60177.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 248

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 17  ILIVEDDEKIAGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 75  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 134

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 135 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 195 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALFTEW 242


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G    L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVSRAGHAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMI 238


>gi|190892751|ref|YP_001979293.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698030|gb|ACE92115.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|327188375|gb|EGE55592.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        ++G  +         +   +    D+  ++      GE  +
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVM--MPGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA   VP+I ++        ++  ++G DD ++KP   RE++ R+  I RR   
Sbjct: 72  DVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAG 131

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   GP       ++ +   EV  L  RE+ I+       G  + + ++    
Sbjct: 132 GEGLKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 189 --GNDTEVGERTIDVQINRLRRKIEEDPANPVWLQTVRGIGYRL 230


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANTIISGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|120597698|ref|YP_962272.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294165|ref|YP_001184589.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557791|gb|ABM23718.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145565855|gb|ABP76790.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319427508|gb|ADV55582.1| KDP operon signal transduction regulator, KdpE [Shewanella
           putrefaciens 200]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+IDD   ++         +G  +    + +      +  + ++  ++  L     +  
Sbjct: 5   IVVIDDETQIRRMLRIALASEGYDVTEAENGQQGLSAVARQQPELVILDLGL--PDMEGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ + +R  S V +I +S     +  +   D+G  D V KP    E+    R        
Sbjct: 63  QVLQELRGWSDVAVIVLSVRNQDKEKVAALDAGAQDYVTKPFSVEELLARVRAILRDHIK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +++    R  +V  +V  L  +E  +L  L ++    V +TQ+   I+G
Sbjct: 123 PEKLPILDDGKLQIDLSRRLVKVDNQVIELTPKEYAVLSKLASSPNCVVTQTQLLKEIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                 + + +   +S LR+KL +       + ++  +GY +
Sbjct: 183 PAHTE-DTHYLRIVVSHLRQKLGDSPSEPQYMRTEPGVGYRL 223


>gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 8   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVM--MPSMDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 66  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 125 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 184 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 223


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+         +   D   ++  L       L
Sbjct: 25  ILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLML--PDLNGL 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R     P+I ++   S+   +   D G DD + KP              R +  
Sbjct: 83  EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 142

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A    +               ++       G+   L +RE  +L  L+ N+   V++
Sbjct: 143 EKEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNNVVSR 202

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 203 DELLNKIWG-PESNIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 250


>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGIDGLR 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|223984078|ref|ZP_03634232.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM
           12042]
 gi|223963953|gb|EEF68311.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM
           12042]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       + G  +    + +    + +     ++ ++          L
Sbjct: 6   ILVCEDEVEIGNAIEIYLKNQGYGVHRAYNGKEGLEVLARQTIHLAIVDLM--MPVMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 64  TMIMTLRQSYDFPVIVLSAKSEDMDKITGLNMGADDYITKPFTPMELLARVNSQLRRYAK 123

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +  E                    ++  + G    L   E RIL+ LM N G+  +  
Sbjct: 124 FLSLKEHQSEDEQVYTVGGLELNNDTKEVSLDGNPVRLTPIEFRILQLLMKNPGRVYSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   +EA+  + V  HI  +R+K+  +      +     +GY I+ 
Sbjct: 184 EIYERVWN--EEAIATDTVMVHIRNIREKIEIDPRNPRYLKVVWGVGYKIEK 233


>gi|187933012|ref|YP_001886059.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721165|gb|ACD22386.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G   +  N            R D+  ++  L        
Sbjct: 4   ILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRML--PDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+   IR  S VP+I ++     +  L  F  G DD + KP + +E++ RV        +
Sbjct: 62  EVCNHIRNKSDVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSGK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +       I + +   +  V+G+   L   E +IL  + +N  K  ++ ++  ++ 
Sbjct: 122 IDFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESVI 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             +     + V++SHI  LR+K+         + +   +GY  +
Sbjct: 182 EEY-YEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRFE 224


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  +A     G  +E   S      + S  + D+  ++  L         
Sbjct: 1   MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML--PDIDGFT 58

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           + R IR      P++ ++     Q  +     G DD V KP         +  +    R 
Sbjct: 59  VTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTRE 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 119 QVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 179 -QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 229


>gi|71066576|ref|YP_265303.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039561|gb|AAZ19869.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   G   L
Sbjct: 12  ILIVEDDERLAMLTQDYLVKNGLEVAIETDGNRAIRRIINEQPDLVVLDVML--PGSDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H Q P++ ++        +   + G DD V KP   R +LAR       +  
Sbjct: 70  TVCREVRPHYQNPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    R E G + + + GR   +  E+      E  +L  L +N G+ +++  IF  
Sbjct: 130 VPSEDVPQRLEFGELVIDNGGRSVNLGDELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 190 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238


>gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|167464653|ref|ZP_02329742.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384704|ref|ZP_08058372.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150403|gb|EFX43896.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+ID      D       +    +    + E    L      D+  +E  L       L
Sbjct: 6   IVVIDSDPEAVDELKPHLLEHAYDVTVARTWEQAVHLIPKESPDLIILELAL--PDVNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           E+ R +R  S  P++ +S        ++  D G D+ + KP +  ++LA      R  +I
Sbjct: 64  EICRFLRQSSSTPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCSI 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N       + +       E QGE   L  +E  +L  L +N        ++F 
Sbjct: 124 RTSNSGENRVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRIEELFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++ + D   +   +  H+S LRKK+  N      + + R +GY  +
Sbjct: 184 KVWSV-DSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGYKFN 229


>gi|148240222|ref|YP_001225609.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848761|emb|CAK24312.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 246

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +L+DD A + D        +G  +   +      +        D+  ++  L       
Sbjct: 11  ILLVDDEARLTDLLKMELEVEGYDVVVASDGASGLFHARETPGPDLIVLDWNL--PDFSG 68

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR      P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR 
Sbjct: 69  IDICQRIRTSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 KVSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    GP           + +  RD      +  L  +E  +L +LM  +GK + +
Sbjct: 129 ITFAAVNGDGPQPETLSVGNLSMNTITRDVYRGERMIQLSVKEYELLNFLMRGQGKVLER 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I   ++G  +   ++N+++ +I  LR+K+ +K     + + R +G+ +
Sbjct: 189 AAIMRGVWGE-NFYGDDNLLDVYIRYLRQKVESKDLPTLIHTVRGVGFIL 237


>gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 249

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ +        +G  +                  DV  ++  L       L+
Sbjct: 27  LVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDVML--PDMSGLD 84

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +PL+ ++   S++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 85  VLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTGV 144

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         G + +  D  +    G+   L   E  +L ++M N  + ++K QI   +
Sbjct: 145 TSEDGGAKIVVGDLVLDEDSHEVTRGGDPIALTATEFELLRFMMRNAKRVLSKAQILDRV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE ++S LRKK+ +      + + R  GY +
Sbjct: 205 WS-YDFGGRSNIVELYVSYLRKKI-DSGREPMIHTLRGAGYVL 245


>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMI--PGINGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 222


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 9/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   + +             +     E       +   ++  ++  L       
Sbjct: 1   MILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLML--PRING 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118
           +E+ R +R   Q P+I ++    +   ++    G DD       +               
Sbjct: 59  IEVCRQLRLKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVS 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + + + G I +       + + E   L   E  +L  L+ N G  V K  I + ++
Sbjct: 119 NQNKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +++ V  NVVE +I  LR KL        +++ R +GY +
Sbjct: 179 G-YEKNVSTNVVEVYIRYLRNKLAGIN----IETIRGIGYRL 215


>gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 270

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 54  ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTL--PGMDGR 111

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +          + G     + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLY- 230

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 231 NWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 267


>gi|83951589|ref|ZP_00960321.1| DNA-binding response regulator ChvI [Roseovarius nubinhibens ISM]
 gi|83836595|gb|EAP75892.1| DNA-binding response regulator ChvI [Roseovarius nubinhibens ISM]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      S    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQQAFDAFSKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +R  S +P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRLRQKSSMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +R+         +G+   L   E  +L+ L    G   ++
Sbjct: 122 VDGTISPAEAEEGKVIERGELRMDPLRHAVSWKGQDVSLTVTEFLLLQALAQRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            Q+    Y      V++  ++SHI +LRKKLRN    F  +++   +GY  + 
Sbjct: 182 DQLMDVAYD-DQVYVDDRTIDSHIKRLRKKLRNVDSDFSAIETLYGIGYRYNE 233


>gi|254822466|ref|ZP_05227467.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G ++      E       + R DV  ++  L    G  VL
Sbjct: 12  LVVDDEPVLAEMVSMALRYEGWNISTAGDGESAIAAARNQRPDVVVLDVMLPDMSGLDVL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R      Q+P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 72  HKLR--GEIPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 129

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 130 TTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 190 WS-YDFGGRSNIVELYISYLRKKI-DNGRDPMIHTLRGAGYVL 230


>gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +++  ++        +E   + E   +L      D+   +  L    G  V
Sbjct: 3   LLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGMDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R      Q P++ ++     Q  +D   +G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  ITSLR--DEDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRAS 120

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                         +   ++ +V GEV  L   E ++LEYLM N  K V+KT++   +Y 
Sbjct: 121 GYAKPEIVKGPISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  + +LRKK+       P+D+ R  GY +
Sbjct: 180 AQDYDRDSNVLEVFVGRLRKKIDPDGTIQPIDTLRGRGYRL 220


>gi|167032707|ref|YP_001667938.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166859195|gb|ABY97602.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGTRIDLTAKEFCLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEE 223


>gi|326797323|ref|YP_004315143.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326548087|gb|ADZ93307.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 221

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A V     +     G S +  ++ E    L      DV  ++  +       +
Sbjct: 3   ILIVEDDASVSHWISSKLHTSGHSCKLVDNGEDALKLIKEEVFDVILLDRVI--PKIDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRL 119
           +L  ++   S  P++ +S        ++   +G DD            +         + 
Sbjct: 61  QLLGLLANESHPPVLILSANDQTSDRIEGLRAGADDYLGKPFDFAELLLRLERLYCRTKQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   + +  +  +    G    L  +E ++L  L  + G+ V ++ +    +G
Sbjct: 121 VASSNFIKIKDMIINLERHEVTRSGHRVDLTNKEFKLLYVLAEHPGQTVTRSMLLEKAWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ H+SKLR KL        + + R +GY++
Sbjct: 181 -YHFDPQTNVLDVHLSKLRNKLDGGSKNPIIRTIRSVGYAL 220


>gi|239991353|ref|ZP_04712017.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD   +    +         ++          L ++   DV  ++  L       +E+ 
Sbjct: 2   VDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGL--PDMDGVEVI 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +    
Sbjct: 60  RGLRGWTRVPILVLSARQTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPVGQ 119

Query: 125 RAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              T            V    +     G    L   E  +LE L+ N G+ V++ Q+   
Sbjct: 120 EGGTEDIAVVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNSGRLVSQKQLLQE 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      E N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 180 VWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 224


>gi|161702976|ref|YP_371670.2| DNA-binding response regulator CreB [Burkholderia sp. 383]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  I   G DG+        +         R D+ A++  L        
Sbjct: 6   ILIVEDEVAIADTIIYALGTDGMQTVHCTLGQAALDHLRDTRFDLVALDVGL--PDLSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 64  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVIKPFSPRELAARVRVILRRFYR 123

Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                        +DG      G    L R E  +L  L+ + G+  +
Sbjct: 124 TAAPESPLAPAPAPAATIAPGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIYS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + Q+   ++        +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 REQLMDLVWHEA-FDSADRTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 234


>gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 252

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G+           +      R D+  ++  L   GE  L
Sbjct: 8   ILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLML--PGEDGL 65

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +RA   H+  P++ ++        +   + G DD + KP   RE+ ARV AI RR
Sbjct: 66  TLCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGK 166
            +      +T P     + R  +             QG V PL   E R+L   +A+  +
Sbjct: 126 ARALPPNLDTQPQAQARELRFAQWRLDTVNRHLIDAQGTVVPLSGAEYRMLGVFLAHPQR 185

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++ Q+     G  +  V +  ++  +S+LR++L +       + + R  GY +
Sbjct: 186 VLSRDQLMELTQGR-EADVFDRSIDLMVSRLRQRLGDNAREPAIIKTVRNEGYVL 239


>gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114]
 gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component
           regulatory system with EnvZ [Vibrio fischeri ES114]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDKMIEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVF 232


>gi|84514699|ref|ZP_01002063.1| DNA-binding response regulator PetR [Loktanella vestfoldensis
           SKA53]
 gi|84511750|gb|EAQ08203.1| DNA-binding response regulator PetR [Loktanella vestfoldensis
           SKA53]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 80/226 (35%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +           + +    D+  ++      GE  +
Sbjct: 8   LLIVDDDARIRSLLQKFLMRAGFLVTTARDAAHARRVLAGLEFDLIVLDVM--MSGEGGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
            L R +R     P++ ++        +   ++G DD + KP            + R    
Sbjct: 66  ALCRDLRRTITTPIMLLTAKGETMDRITGLEAGADDYLVKPFEPKELLLRINAILRRVPA 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + +       GP+R   +  +      +  L   E +++       G+ V +T++  
Sbjct: 126 AEPVAILPKVLHMGPVRYDIERGEMWHGTNLVRLTATESQLMRIFSGRPGEPVTRTKLVE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +        +E  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 EL-SRSGGQTQERAVDVQITRLRRKIEIDPKQPRFLQTVRGEGYML 230


>gi|319764977|ref|YP_004128914.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330827171|ref|YP_004390474.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317119538|gb|ADV02027.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312543|gb|AEB86958.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G ++E         +L      D   ++  L       L
Sbjct: 3   ILVVEDEPTLCAQLVQAIAGAGHTVESAGDGVQAHYLGDVESFDAVVLDLGL--PQLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  R A   +P++ ++   S Q  +   D+G DD + KP H  E+LAR+ A+ RR+ 
Sbjct: 61  SVLRRWRAAGRNMPVLILTARGSWQEKVAGMDAGADDYLAKPFHMEELLARLRALLRRVG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++ + + GPI + +      V G    L   E ++L  LM  +G+ +++T++   IY 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGRPLTLTSHEFKLLSLLMQRKGEVLSRTELAEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL        +++ R LGY +
Sbjct: 180 PQDSERDSNTIEVFVGRLRKKLPE----GCIETVRGLGYRL 216


>gi|317053265|ref|YP_004119032.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316953004|gb|ADU72476.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D            G+ G +++   +             D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSTYLRRALGESGFTVDVSANGAEGLHFALEFDYDAIILDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   +R+  Q P++ +S   S+   +     G DD + KP    E    +  +      
Sbjct: 61  RVLEGVRSSKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRSA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   ++V    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGTDITQLQIHDLQVDLLSRRVFRLGTRLDLTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKVDTPFAVRLLHTVRGMGYVLEV 223


>gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L   +G       S    + L +  + D+  ++  L   GE   
Sbjct: 9   ILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGML--PGEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+   +P++ ++        +   + G DD V KP + RE++AR+ +I RR   
Sbjct: 67  SICRRLRSSRSIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRASF 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174
           S    E      F+  R      ++F        +   E  +L    +N  K + + Q+ 
Sbjct: 127 SQQPEEDVAPMTFAGWRIDPKSRQLFDAEGAEVSMTTAEFDLLWAFCSNPNKVLTREQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           S  +      VE   +++HIS++R+K+   L     + + R  GY  
Sbjct: 187 SMTHAGSAGPVE-RSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 232


>gi|160932807|ref|ZP_02080196.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753]
 gi|156867881|gb|EDO61253.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         D G S++     E        A  D   ++          +
Sbjct: 3   ILIAEDERDLNQLIKKRLKDAGYSVDACFDGEEVFDYLLCAEYDALVLDIM--MPKMDGI 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + + R  + +P++ ++   S++  +   D+G DD + KP    E+LAR+  + R+  
Sbjct: 61  TVLKKLRREENALPVLLLTAKDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVLLRKPV 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +            D R          L  +E  +L Y+M N G  +++ ++   ++ 
Sbjct: 121 TEKSSILNVADLSLHVDTRRVFRGNRELQLSSKEYSLLHYMMQNAGVVLSRDKLEQHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D +   NV++ +I  LRKK+        + + R  GY +
Sbjct: 181 -YDFSGGSNVIDVYIRFLRKKVDEGYDKKLIHTVRGHGYVL 220


>gi|120405382|ref|YP_955211.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958200|gb|ABM15205.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 250

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ +        +G  +           +      DV  ++  L       LE
Sbjct: 28  LVVDDEPVLAELVSMALRYEGWEISTAGDGATAIAIARDNPPDVVVLDVML--PDMSGLE 85

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +PL+ ++   S++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 86  VLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 145

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S + +    +        D  +    G+   L   E  +L ++M N  + ++KTQI   +
Sbjct: 146 STDTSGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNAKRVLSKTQILDRV 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE ++S LRKK+ +      + + R  GY +
Sbjct: 206 WS-YDFGGRSNIVELYVSYLRKKI-DSGREPMIHTLRGAGYVL 246


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  ++  +  +  E L +    D+  ++  L       L
Sbjct: 3   ILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWML--PERSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           +L R +R   +  P++ ++   ++   +   D+G DD + KP   +     + A +    
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+      R   G + + +  +    QG    L  +E ++L  LM + G+ V+  ++ + 
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQGRRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +     NV+ + I  LR+KL        + S    GY  
Sbjct: 181 VWGSAN-PPSSNVLAAQIRLLRRKLEAPGETPLIFSVYGKGYRF 223


>gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
 gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
 gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii]
 gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii]
 gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii]
 gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii]
 gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii]
 gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii]
 gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii]
 gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii]
 gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii]
 gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii]
 gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A    +          +      +G+   L  RE  IL  LM +  K  +K  +  
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|168177977|ref|ZP_02612641.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670984|gb|EDT82958.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  ++    DG  ++G    +  +        D+  ++  L    E   E
Sbjct: 6   LVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINL--PDESGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP + +E+        R  + Y
Sbjct: 64  LCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVSKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             ++V  +GR      +   L  +E  +LE+ + NR    ++  + + 
Sbjct: 124 KEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLNK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 184 VWG-FDYEGEVRTVDVHVRRLRSKLDKENSASIIDTAFGIGYVM 226


>gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G  +           +       ++ I+          +
Sbjct: 5   ILVCDDERDILDAIKIYLKAEGYKVFTAEDGARALEIIKENEIHLAIIDIM--MPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L   +R  + +P+I +S    +   +   + G DD + KP +  E+ ARV ++ RR   
Sbjct: 63  TLIMKMREKTNIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRRYFS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +     + G + +F D ++  V+ E+  L   E +IL  L  N G+  +  +I+ 
Sbjct: 123 LGASDIKTGDLKIGRVSIFDDSKEVRVEDELANLTPYEYKILYLLAKNPGRVFSSNEIYE 182

Query: 176 AIYGLFDEAVEEN-VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +EA++   ++  HIS LR K+  N    D + S   +GY I+ 
Sbjct: 183 RVW--EEEAIDVRKIISVHISHLRDKIEINPRKPDLIKSVYGMGYKIEV 229


>gi|304389765|ref|ZP_07371724.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326941|gb|EFL94180.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF          +    ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYREFREAMTELLPEMILLDIML--PGVDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---- 113
           +++ R IRA+     +P+I ++   +    +   D G DD + KP    E+++RV     
Sbjct: 59  IQILRRIRANPETEDIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRVRAVLR 118

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G I +        V G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARPADSTVGDEEILTIGSIDLNLPRHTVAVAGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 NRLLDSIWG-YSFHGGTRTVDVHIRTLRKKLG--PAAKHIETVRGVGYKI 225


>gi|302340428|ref|YP_003805634.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637613|gb|ADK83040.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L  D+G  +    + E       S   D+  ++  L   G    
Sbjct: 7   ILVVDDEPHILQILHFLLTDEGYQVTTVETGEAAVETADSEDFDLVVLDLAL--PGIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +     +P++ +S +      +   + G  D V KP +HRE++ RVA +  R   
Sbjct: 65  SVCRTL-RDKGIPILILSSHDEDDYVVSGLELGALDYVRKPFNHRELILRVANLIGRNDG 123

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        V  D  +   +GE   L   E  +L  LM  +G  V   +I   ++G
Sbjct: 124 EERPQGIVSEGVSVNLDSEEVLCRGERVRLTPTEYLLLVLLMKQKGAVVTWEEILREVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +      +++ +I +LR K+  +      + ++   GY  
Sbjct: 184 TEEWDGYRQMIKVNIQRLRTKVEQDPHNPRIIVNQWGRGYRF 225


>gi|290580423|ref|YP_003484815.1| putative response regulator [Streptococcus mutans NN2025]
 gi|254997322|dbj|BAH87923.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +         G + L    S +           D++ ++  L       
Sbjct: 8   ILILDDNPEILEMVQESLNIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIML--PDGSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S +P++ +S    ++     F+ G DD + KP   +E+  R+ +I +R  
Sbjct: 66  FEVLREIRKTSTMPVLFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     P    +  +    +GE    L  +E  IL+ L  N+ + V   Q+   ++G
Sbjct: 126 PEKDDTLILPTCQVNFSQALITKGELEIQLTAKEYSILKVLYNNQNRIVTFDQLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           L      EN + +HI K+R+K+  N    + + + + LGY +
Sbjct: 186 L-QYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKL 226


>gi|240849737|ref|YP_002971125.1| transcriptional regulator BatR [Bartonella grahamii as4aup]
 gi|240266860|gb|ACS50448.1| transcriptional regulator BatR [Bartonella grahamii as4aup]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +          +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDI--KMPRMDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL R +R  S +P+I ++        L     G DD + KP   R               
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRSNA 128

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S +  + G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLSTGTSSTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYS-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|227549745|ref|ZP_03979794.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078180|gb|EEI16143.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G         +       S   D+      L+  G    
Sbjct: 4   ILIVEDEESLADPLAYLLRKEGFQAIVAPDGQSALREFDSDSVDLV--LLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           ++ + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+         
Sbjct: 62  DVCKKIRAVSAVPIIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGPE 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   ++      E G +++        V GE   +P +E  +LEYLM N G+ + + Q+
Sbjct: 122 VVDEEVEADERILEGGRVKMDVSRHTVFVDGEPVSMPLKEFDLLEYLMRNPGRVLTRGQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 IERIWGA-DYVGDTKTLDVHVKRLRTKIEVAPSRPTQLVTVRGLGYKFE 229


>gi|220906287|ref|YP_002481598.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219862898|gb|ACL43237.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 261

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 6/219 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+    ++          G  +    + +  + +  + R D+  +++ L       LE 
Sbjct: 9   IIEGNPHLRSLLGWHLQQAGYVVYLAANGQQGQEVFLTKRPDLVILDSDL--PDGNGLEF 66

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLKVS 122
            R ++   QV +  +S   +    ++   +G DD + KP      +        R     
Sbjct: 67  CRWLQRQQQVIVFMLSARNTETDIVNGLKAGADDYLTKPFGMQEFLARVECLGRRSRPAP 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G +R+    R    Q E+  L  +E  +L  L    G  +++ ++    +   D
Sbjct: 127 PAYLKYGDLRIDLIQRRVHWQQELVDLTPQEFSLLYVLAQAGGSPLSRQELLQRAW--PD 184

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +      V++HI  LRKK+  +      + + R +GY +
Sbjct: 185 DIDNPRTVDTHILSLRKKVESDPQQPRLIQTVRNVGYRL 223


>gi|114762736|ref|ZP_01442170.1| DNA-binding response regulator [Pelagibaca bermudensis HTCC2601]
 gi|114544646|gb|EAU47652.1| DNA-binding response regulator [Roseovarius sp. HTCC2601]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        DG +++   SL   E   ++   D+  ++  L        +
Sbjct: 4   LLVEDNGELAEAVSNRLALDGHAVDHAGSLAEAEHCLAATSYDLILLDVML--PDGDGRD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
                RAH + P+I ++    +   +   D G DD + KP    E+ ARV A+ RR   S
Sbjct: 62  FLARSRAHLETPVIVLTARARVTDRVGALDQGADDYITKPFDFSELEARVRAVLRRRGGS 121

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G              GE   L  RE R+LE    + G+  +K Q+   ++  F
Sbjct: 122 ARNEIPLGEALFDPMSGTLRAGGESVTLRNRETRLLEVFARHPGQTFSKGQLLDRLFS-F 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D  V EN +E ++ +LR+++        +++ R LGY ++
Sbjct: 181 DAEVTENAIEVYVGRLRRRIGPLGL--RIETVRGLGYRLE 218


>gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +G  +    S    +        D+  ++  L   G    
Sbjct: 7   ILVVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLML--PGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
                IR     P+I IS   +++  ++    G DD ++KP    E+LAR       +  
Sbjct: 65  IFIDEIRKIKNTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKI 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F  
Sbjct: 125 TNSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFET 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 185 VW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|194468210|ref|ZP_03074196.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194453063|gb|EDX41961.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +    E        E   ++A      I   L    +  +
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEKWQYEFAYDGVEAEEKFNAAPHKWDIILLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR  S   PLI ++   +    +   + G DD V KP     ++AR+ A+YRR  
Sbjct: 63  QVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRRTH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKR 167
           ++            +     +                       +E  +L+ L +   + 
Sbjct: 123 LNKLEEVQETDSDDTFDIQTKNFKMNTKTREVFLYGKPVSDLTPKEFDLLKTLASKPRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++Q+   ++  ++   +E  V++HI KLR+KL N  G   + +   +GY  D
Sbjct: 183 FTRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLENI-GPQVIKTVWGVGYKFD 234


>gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++          G  +      E    L +    DV  ++  L    +   
Sbjct: 13  ILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSYDVVLLDLML--PKKSGK 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL +  R  +  P+I  +   ++   ++  D G +D + KP    E+    RV    R  
Sbjct: 71  ELCQEFRKLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRET 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I++    +   +  +   L + E  ILEY M NR    ++ +I + ++G
Sbjct: 131 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+        + + R  GY  
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKM--DTESKYIHTIRGFGYIF 228


>gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G  G ++    + +    L  + + D+  ++  L   G    
Sbjct: 8   ILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEKPDLVLLDLGL--PGMSGH 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  R     +P++ +S        ++  + G DD V KP    E++AR+        
Sbjct: 66  ELLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +      +TG + V    R  +V+G+   L  +E  IL  L+ + GK +    +   +
Sbjct: 126 QQQGEKPVFQTGDLSVDLVKRVVKVEGKEVKLSPKEYEILRMLVQHAGKVLTHHFLLKQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G   ++ +   +  ++ +LR+K+         + ++  +GY +
Sbjct: 186 WG---DSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRL 226


>gi|215483396|ref|YP_002325609.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|213988889|gb|ACJ59188.1| response regulator [Acinetobacter baumannii AB307-0294]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112
            E+   IR  +Q P+I ++        +     G DD V KP +  E+            
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A     K    +         S     E +  +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +              ++     E       S    +  ++  L       +
Sbjct: 3   ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIML--PKLNGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+H+  +P++ ++   S +  +   D+G DD + KPI   E++AR+ A+ RR  
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S            +  +      +   PL  +E  ++E  + +  +  +   I   ++ 
Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +E   +N V +HI  LR KL++  G    +++   +GY I
Sbjct: 181 I-EEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           D   + +   AL    G+ ++  N+      +   +  D+  I+  +    G  + ++ R
Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552

Query: 66  IIRAHSQVPLIGISDY 81
                  +P++ ++++
Sbjct: 553 NEPRWRYLPILVLTNH 568



 Score = 41.2 bits (95), Expect = 0.092,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 21/71 (29%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D   ++ +  I      G+       +     +    +  +  +E       E  L
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 62  ELPRIIRAHSQ 72
            L   I  H  
Sbjct: 424 MLLEDIAYHHP 434


>gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG]
 gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+          + 
Sbjct: 8   LVADDDKKIAQFIKNKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWM--MPYLDGIS 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                            +   +         L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|171058057|ref|YP_001790406.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775502|gb|ACB33641.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 265

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A  ++         G ++   + L          R D+  ++  +   G   L
Sbjct: 5   ILVIEDDAAARELLAGNLRHAGYTVSCASDLGEARARTKETRPDLVLLDRMVA--GGHAL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV------DDVVNKPIHHREILARVAAI 115
              R +R   +   I I    +         + +          +  +       R    
Sbjct: 63  SYARQLRGDQRTSGIAIIVIGADAPQAHDTVAALESGADDCVCKSVSVSEVLARIRAVMR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   E   +R     R     G    L   E R+L + M +  + + ++Q+  
Sbjct: 123 RSAPQCGDQALEISGLRFDPAARRVTALGRDIELCAIEYRLLHFFMTHPDRILGRSQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     VEE  V+ H+ +LR+ L        +++ R +GY  
Sbjct: 183 QVWGDH-VCVEERAVDIHVRRLRRALEPSGHAALIETIRGMGYRF 226


>gi|225548096|ref|ZP_03769381.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040772|gb|EEG51018.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   +          +G  ++     E   +       D+  ++  L    G  V
Sbjct: 3   ILLVEDDENLCYTLQYQLEQEGFLVDTCMDGEDALFFIRERVHDLILLDRMLPSMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R        P+I ++   SLQ  +   D G DD + KP    E++AR+  + RR +
Sbjct: 63  LKALRR--EKIFTPVIFLTALSSLQDKITGLDCGADDYMVKPFAFEELMARIRCLSRRPQ 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      I    D +      +   L ++E  ++E  + N G+ + +  + S ++
Sbjct: 121 KWEGSSVISLGDISFDPDQKKLFCHTKECSLSKKEGALMEIFLRNPGQILPRQTLLSRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G  D  VE+  ++++I  LR++LR+      + + R +GY ++ 
Sbjct: 181 G-PDSEVEDGNLDNYIYFLRRRLRSVDSRLELKAVRGVGYQLEV 223


>gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGGGLDGYALAREGDYDVLIVDRML--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E    RV               G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|90424519|ref|YP_532889.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106533|gb|ABD88570.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 270

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++             +    S        ++ + D+  ++  L       L
Sbjct: 37  ILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVML--PDGSGL 94

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +RA     P+I ++        +   + G DD ++KP + RE++AR+ A+ RR  
Sbjct: 95  DACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRRRS 154

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +           F             +  G    L   E  +L+  +   G+ +++ Q+
Sbjct: 155 ETPAPVGASRAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVLSRDQL 214

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D    +  ++  IS++R+KL        + + R  GY  
Sbjct: 215 LDFTRGRSDTF--DRSIDVLISRVRRKLDPSGTARLLKTVRNGGYQF 259


>gi|117926657|ref|YP_867274.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610413|gb|ABK45868.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 241

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +          G  +    S E      ++   DV  ++  L   GE  L
Sbjct: 7   ILIVEDDEPTRTMVADYLRGHGFEVRTLASGETMNSTLAAWPADVIVMDLML--PGEDGL 64

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +   +  + +P+I ++        +   + G DD ++KP   RE+LAR+ ++ RR
Sbjct: 65  TLCKRLSVDKQTADIPIIMLTARGEETDRIVGLEMGADDYLSKPFSTRELLARLRSVLRR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVA 169
            +         PI  +                       L R E  +L   + +  + + 
Sbjct: 125 ARAMPRSHAAPPINHYHFAGWHMNVQAQELIAPDGLIVELTRGEATLLLAFLHHPNQILD 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + QI  A Y      + +  ++  + +LRK+L+       + +    GY +
Sbjct: 185 REQIM-AFYQQRQAGIYDRSIDVQVGRLRKRLQEPKEPQLLKTVWGKGYIL 234


>gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++  +  +   +G         E    +      D+   +           E
Sbjct: 5   LVVEDDKDLRGLFCTILTKNGYKAISAEDGEKALEILEKEYVDLVISDIM--MPNMDGFE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R  +   P++ I+   +       F  G DD + KP+   E++ RV A+ RR ++
Sbjct: 63  LTKALREANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRRAQI 122

Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N R +T    V   D       GE   LP++E  +L  L++       + Q+   I+G+
Sbjct: 123 INERKQTVGNSVLEYDSLTVYQNGEAIVLPQKEFYLLYKLVSFPNHIFTRQQLMDEIWGM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            D   E   V+ HI++LR + +    F+ + + R LGY 
Sbjct: 183 -DSDTEARTVDVHINRLRDRFKENQDFE-IMTVRGLGYK 219


>gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +E  +       L      D+  ++  L        
Sbjct: 3   ILLVEDEERLASFIRKGISAEGYEVEVAHDGRTGLSLFRRDIYDIIILDVNL--PHMNGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R IR  +  VP++ ++   S+    D F++G DD + KP   +E+L R+ A+ RR+ 
Sbjct: 61  DLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRIG 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +         + D +     G+   L  RE  ++EY+M N+GK +++  I   ++ 
Sbjct: 121 SRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L +     NV++ ++S LRKK+        + +   +GY +
Sbjct: 181 L-NFDNNSNVIDVYVSYLRKKIDKGFSPKLLHTIVGMGYVL 220


>gi|261339001|ref|ZP_05966859.1| hypothetical protein ENTCAN_05206 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318832|gb|EFC57770.1| DNA-binding response regulator CreB [Enterobacter cancerogenus ATCC
           35316]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I +   +G  ++ F                ++ ++  L        EL
Sbjct: 8   LVEDEISIADTLIYMLQQEGFEVKAFERGLPVLEAARRQVPALAILDVGL--PDISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  I RR++ S
Sbjct: 66  CRQLLARHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRMQKS 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++   I  F                   R E  +L+ L+   G+  ++ Q+   ++G
Sbjct: 126 AAPSDILRIGQFELNEPAARIHWCGEPLLLTRYEFLLLKTLLHAPGRVFSRQQLMDLVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             D    +  V++HI  LR KLR       P+ + R +GYS+
Sbjct: 186 E-DGDSFDRTVDTHIKTLRAKLRAVNAEISPISTHRGMGYSL 226


>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +G       +  +++            +     ++ ++  L       L
Sbjct: 3   ILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHEDFALAVLDLGL--PRMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA +   P++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    +    +G+   L R+E  +L  L+   G+ + + ++  A+YG
Sbjct: 121 NRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + E  E N +E HI  LR+KL      + + + R +GY
Sbjct: 181 -WGEEAESNTLEVHIHHLRRKLF----PELIRTVRGVGY 214


>gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G  +                + D+  ++  L        
Sbjct: 3   ILLVEDDLEISKLLAEFLQENGYEVFCQYDGLHVLDCLRENKIDLILLDIML--PYRNGD 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S VP+I IS   + Q  +D    G DD + KP    E+LAR+ +  RR++ 
Sbjct: 61  TVLTAVRECSTVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLRRVQF 120

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +              +     +QG    L  +E  ILE LM    K  +K  +F +++
Sbjct: 121 QKDNPTHLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLFQSVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              +   E+N +  HIS LR KL+      D +D+   +GY +
Sbjct: 181 NA-EYISEDNTLNVHISNLRNKLKAVCPDKDFIDTVWGIGYRL 222


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   V         ++G  +           L  +   D+  ++  L       
Sbjct: 4   IILI-EDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIML--PEMNG 60

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV------- 112
           L++ + IR  +Q VP++ ++   + +  +   +SG DD + KP    E++ARV       
Sbjct: 61  LDVCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRS 120

Query: 113 -----AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                  I      + +  +   + V    +     GE   L   E ++L Y + N  K 
Sbjct: 121 NNNGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNPEKV 180

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ +I  A++G+ +  +  NVV+ +++ LRKKL N+     + +   +GY +
Sbjct: 181 ISRAEILDAVWGV-NYELGTNVVDVYVNYLRKKLDNQEDNKLIHTVIGMGYVL 232


>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PEMDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +             +   DV  ++  L       +
Sbjct: 4   ILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ +
Sbjct: 62  EVARRVREIKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   +     V           R      EV  L +RE  +L  LM N    +++  + 
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
 gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +  A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQV 124

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    A          G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSTEESVVAFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVF 232


>gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + + D  I     +G ++  F        + +  + D+  ++  L        
Sbjct: 5   IWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMMTEKKPDLVILDVGL--PDINGF 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R I      +P++ ++        L   + G DD V KP   RE+ ARV  I RR  
Sbjct: 63  ELCRKILTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTILRRSL 122

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N    T        P  +           +   L R E  +L+ L+   G+  ++ Q+
Sbjct: 123 KQNRLLNTPSSAVSIGPFMLDEACASISYHQQPLTLTRYEFLLLKTLLLAPGRVFSREQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++    E   E  V++HI  LR KLR      + + + R LGYS+
Sbjct: 183 MDIVW-THAEESLERTVDTHIKTLRAKLRAVNSEGNAIQTHRGLGYSL 229


>gi|239945512|ref|ZP_04697449.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291448969|ref|ZP_06588359.1| DNA-binding response regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291351916|gb|EFE78820.1| DNA-binding response regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 236

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++ +D     +        +G ++                  D+  ++  +    G  V+
Sbjct: 1   MVAEDDEKQAELVRRYLEREGHAVRIVGDGLAVLDAVRHREPDLLVLDVMMPRADGLDVV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R      ++P++ ++   +    L   D G DD + KP   RE++ARV  + RR + 
Sbjct: 61  RVLRS--EDRELPVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRR 118

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                              V  D  +  V G        E RIL  L A   +  ++ ++
Sbjct: 119 PATPEPVAEDPVLRVGELVVDPDRHEVSVGGRTVECTPGEFRILATLAAGPDRVFSRQRL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G FD  +    V+ H+  LRKK+       + + +   +GY +
Sbjct: 179 LEELHG-FDRYISARTVDVHVMNLRKKIERAPRRPERLLTVFGVGYKL 225


>gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
 gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V     A   ++G              L       +   +  L        
Sbjct: 4   ILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVIL--PKMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
           EL + IR  +  VP++ ++   S    L+ FD+G DD + KP   RE+ AR+        
Sbjct: 62  ELCKEIRKINPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLKRNT 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      +     +R+     +         L  +E  +L Y+  +  + +++ +I   
Sbjct: 122 EQTAPEPEQLTYANLRIDLRQHEVFRGQTPVRLSPKEYNLLVYMTQHAERVISRMEIAEN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+  
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFEPKLIHTKPGVGFIF 224


>gi|170757250|ref|YP_001780246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122462|gb|ACA46298.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  ++    DG  ++G    +  +        D+  ++  L    E   E
Sbjct: 6   LVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINL--PDESGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP + +E+        R    Y
Sbjct: 64  LCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             ++V  +GR      +   L  +E  +LE+ + NR    ++  + + 
Sbjct: 124 KEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLNK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 184 VWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGYVM 226


>gi|320328294|gb|EFW84298.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330878577|gb|EGH12726.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG S+    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFSVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +   S  P+I ++        L     G DD V KP + +E++ARV A+ RR + 
Sbjct: 64  DVLSAVHRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPKEVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +       +      +         +    +  L   E +IL  L+    K   + ++
Sbjct: 124 NASNDRHLRYQNLLVDLNAVTAIIEGHDGTDTLLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVDNVLVTVRSVGYRF 228


>gi|300789850|ref|YP_003770141.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799364|gb|ADJ49739.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+         +G+ +           L S+   DV  ++  L   G     
Sbjct: 2   LVVDDEPGVRKALQRGLRAEGMDVVTAADGPTGLQLASTGSFDVVLLDIML--PGLSGYR 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ +S         D  D G D  + KP     ++A+V A+ RR   
Sbjct: 60  VLERLRKDGVTTPVLLVSAKDGEIDQADGLDLGADGYLVKPFSFVVLVAQVRAVLRRAGP 119

Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              R         V    R      E   L  RE  +LE L+   G  V K ++  A++G
Sbjct: 120 EAGRGTLRLGALAVDRGLRQVHWHDEEVGLSPREFALLEVLVGRAGTVVTKDELLRAVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++AV  N+VE ++  +R+KL        + + R  GY
Sbjct: 180 E-EQAVTRNLVEVYVGYVRRKLDAVGAGALLRTVRGHGY 217


>gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    + S    +V+ ++  L   G    
Sbjct: 7   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVML--PGIDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E++AR+        
Sbjct: 65  QVCKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYV 226


>gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 235

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++DG          ++           +  S    ++ ++          +
Sbjct: 6   ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGVEGLEIIESKEIHLAIVDIM--MPRMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H   P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 64  TMTLKLREHHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTK 123

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NNR +                     +  V G+   +   E +IL  LM N G+  +  
Sbjct: 124 FNNRGQNKKENDRVHVIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSAD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   ++A+  + +  H+  +R K+  N      +     +GY ++ 
Sbjct: 184 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKMEK 233


>gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
 gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ D   A     G   E          L  + R D+  ++  L   G    
Sbjct: 3   ILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRYDLILLDIML--PGADGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I  +   P+I I+    L+  +  F  G DD + KP    E+ ARV A+ RR   
Sbjct: 61  ELMEYI-KNYNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRRYGK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S ++     I V  + +  E  G    L  +E  +L   + NR   + + +I+  ++G  
Sbjct: 120 SRDKIAVAGIEVDMESKTVEKDGHPVELTAKEYDLLLLFLRNRNIALYRERIYEEVWG-G 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V+ H+ +L++K+  +       S R +GY ++ 
Sbjct: 179 EFDPDSRTVDIHVQRLKRKMGLEHSM---VSVRNVGYRLEV 216


>gi|222147052|ref|YP_002548009.1| two component response regulator [Agrobacterium vitis S4]
 gi|221734042|gb|ACM35005.1| two component response regulator [Agrobacterium vitis S4]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV         
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAAN 121

Query: 114 --------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                    +    +      E G + +  +      +G+   L   E  IL  L    G
Sbjct: 122 RETGNAPGNVKTAAEQQARNLERGQLVMDQERHTCTWKGDPVTLTVTEFLILHSLAQRPG 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 VVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRF 236


>gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
 gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++           L       +  ++          ++
Sbjct: 11  LIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQDIHLIIMDIM--MPKMDGIK 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 69  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 128

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ET    V          +   V  +   L   E +ILE L+ N+G+  +  +I+  
Sbjct: 129 GNYKETEDKVVAGSLILDKKRKIVSVDEKEIRLTPIEYKILELLIENKGRVFSIEEIYEK 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 189 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 232


>gi|188583239|ref|YP_001926684.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179346737|gb|ACB82149.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   +         + + + AR D+  ++  L   GE  L
Sbjct: 10  ILVVEDDREISALVARYLRANECRVSLAGDGREMDRVLADARVDLIVLDLML--PGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 68  SLCRRLRASSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRKGA 127

Query: 122 SNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      FS         +    +G    +   E  +L  L    G+ +++ Q+ 
Sbjct: 128 EPQDGDGARRFHFSGWTLDVGLRQVLSPEGARIAVTGAEFDLLHALCLRPGRVLSRDQLL 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               G      E   ++  +S++R+K+  +    + + + R  GY  
Sbjct: 188 DLTQGRAAGPFE-RSIDVLVSRIRQKIERDPRNPEIIRTIRSGGYLF 233


>gi|271966751|ref|YP_003340947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509926|gb|ACZ88204.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V+        + G ++    +           R D+  ++  L        
Sbjct: 4   LLLVEDDAQVRSALTRALTERGHAVISAAAGMPGLTRALEDRPDLVVLDLGL--PDLDGC 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R++RA S VP+I  +        +   D+G DD V KP     + AR+ A+ RR + 
Sbjct: 62  EVLRMLRAVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121

Query: 122 SNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++       +        GR+  + G    L  +E  +L YL A  G+ V+K ++ + ++
Sbjct: 122 ADEGTAPVRVGGLLIEQAGREAFLDGVRLDLTPKEFDLLHYLAARPGQVVSKRELLTEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLG 217
                   +  V+ H+S LR+KL         + +   +G
Sbjct: 182 -RMAYGGADKTVDVHLSWLRRKLGESAQAPRYLQTVHGVG 220


>gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++G      ++G+ +           + +  +  +  ++       +  + 
Sbjct: 7   LVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKVHLIILDIM--MPRQDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 65  TTFKIREQKNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRRYVTL 124

Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               E   I +       + +   + G    L   E +I+E LM N G+  +   I+  +
Sbjct: 125 GTYEEKKTIDIRGLVLDIEAKSVTLDGGFIKLTPIEYKIVELLMKNAGRVFSIHDIYERV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +       E N V  HI K+R+K+         V     LGY ++ 
Sbjct: 185 WNEPGYNAE-NTVAVHIRKIREKIEIEPKNPRYVKVVWGLGYKMEK 229


>gi|302554937|ref|ZP_07307279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472555|gb|EFL35648.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 238

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       S E      +    D+  ++  L   G    
Sbjct: 12  LLVVDDDPPIADLVATVARYEGWEAVTAYSGEDALRRAADFHPDIVVLDLML--PGVDGF 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA   + P++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 70  GVLDRLRASGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 129

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G + +  D R+     ++  L   E  +L YLM      + K QI   +
Sbjct: 130 GPAFQRSVLRVGDLTMDEDTREVRRGDKLLSLTPTEYEVLRYLMRKSPTVLTKAQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL   +      + + R  GY +
Sbjct: 190 W-EYGFGGRSNVVELVVSRLRRKLDETDDGAAPLIHTVRGFGYVL 233


>gi|229819351|ref|YP_002880877.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565264|gb|ACQ79115.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 248

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 20/235 (8%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D   +++    + G  G       +      L       V  ++  L        E+
Sbjct: 11  IIEDDPDIRELLETVLGQAGFRTHSSETGNDGVRLVQEVAPLVVTLDISL--PDIDGFEV 68

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R IR  S   ++ ++        L   DSG DD   KP   RE+ AR+ A+ RR + + 
Sbjct: 69  ARRIRPVSDAYIVMLTARAEEIDALMGLDSGADDYQTKPFRPRELRARIEAMLRRPRRAG 128

Query: 124 NRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             AE                V    R   V G    L R E  IL  L +  G+ V+K +
Sbjct: 129 GVAEQADPGSPSVLGSDGLEVDVLSRMTRVDGADIHLTRSEFDILAELTSRPGRVVSKNE 188

Query: 173 IFSAIY------GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   ++      G      +   VE H++ LR+KL +       + + R LGY  
Sbjct: 189 LVRVLWADAYDTGTPISEADRRSVEVHVANLRRKLGDSSLEPRWIHTVRGLGYRF 243


>gi|326803329|ref|YP_004321147.1| response regulator receiver domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651690|gb|AEA01873.1| response regulator receiver domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++         +    +   S             D+  ++  L   G    
Sbjct: 4   LLIVEDDPMIQAMLGEKLRLENYHFQPAYSATEGLLYIERESFDLILLDLML--PGMTGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           E    +R  + VP+I +S   S+ + ++   +G +D + KP         I  ++     
Sbjct: 62  EFLSQLRQANDVPVIVLSAKDSILSKVEVLKAGANDYMVKPYDLDELVARIEVQLKNRAS 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + +     + +    +    QG+   L +RER IL  L+    +   K +I+ A 
Sbjct: 122 VSSTGSEKFSYQGLCLDRLNQTISYQGKEVRLTQRERAILMLLLKYPKRIFTKQEIYEAA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       +   +  HIS LRKKL+     D +++   LG+ +
Sbjct: 182 W-QESYLGDNKTLSVHISNLRKKLKQASDRDWIETIWGLGFRL 223


>gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +++     F  +   +    + +       S + ++  ++           E+ R
Sbjct: 2   EDEIRIREVIADYFKQNNWEVYEAGNGKDALLWFDSVQPELIILDIM--MPELDGWEVCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLKV 121
            +R+ S VP+I ++        +  F+ G DD V KP   + ++AR  A+ +     ++ 
Sbjct: 60  QVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGHVQP 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++    G   + +     EV      L  +E  +L  L+ N+G  V++  I + ++G+ 
Sbjct: 120 ESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNRVWGI- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +  VV++HI KLR KL        + +    GY  + 
Sbjct: 179 NFEGDTRVVDTHIKKLRSKLGR--ESRHIRTVFGTGYRFEE 217


>gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 247

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD   + D   A    +G  +                  D   ++  L    G  VL
Sbjct: 24  LVVDDEPDLTDVLGAALRSEGWEVRIACDGAGALEAADGFHPDAVVLDWMLPDTDGLGVL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R      QV ++ ++   +++  +    +G DD V KP    E+LAR+  + RR  +
Sbjct: 84  HALRR--RIPQVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAGM 141

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S            + +  + R+    G +  L R E  +L +LM N  + ++K QI   +
Sbjct: 142 SREADAPRLVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     +VVE +IS LRKK+ +      + + R +GY +
Sbjct: 202 WS-YDFGGRAHVVELYISYLRKKI-DAGQAPLIHTVRGVGYVL 242


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 24  LVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVML--PDMDGLA 81

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R ++ VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 82  VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 141

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +                   D  +    GE   +   E  +L +LM N  + ++K QI  
Sbjct: 142 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 201

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 202 RVW-NYDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 244


>gi|238920215|ref|YP_002933730.1| DNA-binding transcriptional regulator PhoP [Edwardsiella ictaluri
           93-146]
 gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri
           93-146]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  +
Sbjct: 3   ILVVEDNNLLRHHLSVQIRELGHQVDAAENAKEADFFVREQGPDIAIVDLGL--PGEDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++      P +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIMETLIRNSGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+++   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQSEYPADVITTVRGQGYRFDV 222


>gi|291301488|ref|YP_003512766.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570708|gb|ADD43673.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D A V           G  +   ++        ++   DV  ++  L        +
Sbjct: 5   LLIEDDANVSAALTRALSKAGHHVRAESTALEALRKVTADPPDVVILDLGL--PDLDGAD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
             R++R  S VP+I  S        +   ++G DD V KP     +LAR+          
Sbjct: 63  ALRMLRGVSNVPVIIASARRGETDIIKLLNAGADDYVTKPFSAAHLLARIAAVLRRHESS 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     GP+ V        + G    L RRE  +L YL  + G+ V+K ++   ++
Sbjct: 123 DTAKSVLITVGPLSVDQSRHVAALDGNELELTRREFSLLTYLARHAGRVVSKQELVEQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                   E  V+ H+S LR+KL         + + R +G  +
Sbjct: 183 RQP-YIGAEATVDVHVSWLRRKLGETAAKPRLLRTVRGVGIML 224


>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        +    +    + E  +         +  ++  L   GE  L
Sbjct: 8   ILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLML--PGEDGL 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R  ++ +P+I ++        +   + G DD + KP + RE        +  + 
Sbjct: 66  SICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQA 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I      S      G   +    R+    G    L   E  +L+ L+ +  + +++ +
Sbjct: 126 KHIPGAPSNSETVVSFGRFTLNLATREMTDDGNPISLTSGEFAVLKSLVEHARQPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   +GY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEADPAHPRYIQTVWGVGYVF 233


>gi|254976162|ref|ZP_05272634.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093552|ref|ZP_05323030.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315295|ref|ZP_05356878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517963|ref|ZP_05385639.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651079|ref|ZP_05397981.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684144|ref|YP_003215429.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687803|ref|YP_003218937.1| two-component response regulator [Clostridium difficile R20291]
 gi|260210307|emb|CBA64619.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213820|emb|CBE05796.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++    +      +  +    ++ ++          +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIM--MPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 122 SNNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N       +V                + ++  + G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            +  +I+  ++   + A+  + V  H+  +R+K+  +      +     +GY I+ 
Sbjct: 184 FSADEIYERVWN--ENAINTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237


>gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E    ++   + D+  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKME-LTQYDLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +A + +P+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR  
Sbjct: 65  ANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTS 124

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +     ++          +   + G    L ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 PTQGKEVQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDILA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 KVW-QEEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFE 227


>gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         DG      +            R D+  ++          +
Sbjct: 3   ILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKI-EERPDLVLLDIM--MPEVDGI 59

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R ++     +P++ ++     +TT+   D+G DD V KP     +           +
Sbjct: 60  SLCRQLKTMDPALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVL--LARIRAVLRR 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GP+R   +      + +   L  +   IL+  + +  +   +  +F  ++  
Sbjct: 118 TRVVNIQYGPLRYDEESGRVLYEEQEIVLTPKATAILKLFLQHPNRLFNRLDLFDLVW-P 176

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +    +   V++HI  +R+KL +      D + +    GY 
Sbjct: 177 YSAESDPRTVDAHIRMIREKLGDAGFPIDDYLKTVWGRGYR 217


>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   V++         G   +   + +      SS   D+  ++  L       
Sbjct: 5   LILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGL--PDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           +E+ R IR+ S +P+I IS        +   D+G DD + KP          R    R+A
Sbjct: 63  VEIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +    +   +    G + +        + G+   L   E ++L  L  + GK +  T I
Sbjct: 123 IMQGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I+G      +   +  +++ LRKK+ ++      + +   +GY +
Sbjct: 183 TQEIWGRS-WENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGYRM 229


>gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
 gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D +L+ +G        G +++ F          +SA  D   ++  L       L
Sbjct: 3   ILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTL--PKMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ +  R      P++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 61  EILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             SN   E   IR   + R   +Q +   L  RE ++LE  M N+ + + +  I   +Y 
Sbjct: 121 GQSNPIIEHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKHFIRTVHGVGYTLGKN 219


>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 82/224 (36%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++   I      G  +    +             DV  ++           
Sbjct: 4   ILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVM--MPEMDGF 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116
           E    IR   +   +I ++     +  ++    G DD + KP         I A +  + 
Sbjct: 62  EACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVE 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  + R ++GP  +    +     G+   L   E  ++ +L+ N    +++  +  A
Sbjct: 122 KVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G+ +   +   V+ +I +LR+K+ +       +++    GY 
Sbjct: 182 VWGV-NYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYK 224


>gi|256374532|ref|YP_003098192.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255918835|gb|ACU34346.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       S E         + D+  ++  L        
Sbjct: 9   LLVVDDEPHIADLVATVARYEGWQAVTAGSGEAAIRAALDFQPDIVVLDLML--PDVDGF 66

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+    + VP++ ++        +     G DD + KP    E++AR+ A+ RR  
Sbjct: 67  TVLDRLRGEGAMVPVVFLTARDGTADRVAGLTRGGDDYLVKPFSVEELMARLRAVLRRST 126

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +     +       D R+      +  L   E  +L YLM      + K QI   +
Sbjct: 127 GPSWKRSVLKVADLVLDEDTREVRRGDRLVTLTPTEYELLRYLMRRSPTVLTKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVVE  +S LR+KL  +     + + R +GY +
Sbjct: 187 W-EYDFGGRSNVVELVVSHLRRKLDVEGDEPLIHTVRGVGYVL 228


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G    L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVSRAGYAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMI 238


>gi|154495976|ref|ZP_02034672.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
 gi|150274859|gb|EDN01915.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLI-GKGE 58
           + ++++D   +++     F   G ++  + S E   E  Q      +  ++  L    G 
Sbjct: 4   VILVVEDDESIREMLRYYFQSVGYTVRAYESGEAMFEGEQGQDCPVLCILDIMLPGMDGL 63

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116
           ++L   R  R    VP+I ++   +    ++  ++G DD V KP    E+ ARV A    
Sbjct: 64  EILRRLRADRDRESVPVILLTARTAEMDRVNGLEAGADDYVVKPFGIMELQARVKAVLRR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R +  N     G + +    R     GE   L  +E  +L  L  +RG  + + +I  +
Sbjct: 124 TRREEDNRLIRCGDLEIDPAARVVRRGGEQVDLTFKEFELLRLLATHRGVALTRDEILQS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E   V+ H+  LR+KL      + + + R +GY ++
Sbjct: 184 VWD-YDYTGETRTVDMHVKTLRQKLGE----EYITTVRGVGYKMN 223


>gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72]
 gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++          L ++   D+  ++  L   G    
Sbjct: 5   LLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHHFDLIVLDVML--PGMDGF 62

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +R    S  P+I ++   +L   L  F +G DD + KP    E++AR+ A+ +R 
Sbjct: 63  TLCKRLREGERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVLKRS 122

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    R           D  +    G+   L     ++L  LM      V +  + +A++
Sbjct: 123 RGGGRRRLRVGDLDYDLDTLEVTRAGQALHLGPIGLKLLAVLMQKSPAVVRREALETALW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  DE  + + + SHI  LR+++        + +   +G+ +
Sbjct: 183 G--DEPPDSDSLRSHIHALRQQIDKPFPTPLLHTVHGVGFRL 222


>gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +      +       S   D+  ++  L       L
Sbjct: 5   LLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDPPDLVILDLML--PDMDGL 62

Query: 62  ELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E+ R IR+      Q+P++ ++        +   + G DD + KP   RE+LAR+ A+ R
Sbjct: 63  EVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLR 122

Query: 118 RLKVSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     +  +T        +  D R   V G++  L   +  +L  L    G+ + + QI
Sbjct: 123 RHVEGAHPVQTQLRFGTLEIDRDARSVSVAGQLCDLTSYQFDLLVALAERAGRVLTRDQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A+ G  +    +  ++ H+ ++R  +  +      + + R +GY  
Sbjct: 183 MEAVRGR-ELDAFDRSIDVHMGRIRAAIELDAKDPKRILTVRGVGYVF 229


>gi|42779728|ref|NP_976975.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217958170|ref|YP_002336714.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137383|ref|ZP_04265995.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229194895|ref|ZP_04321678.1| Two-component response regulator [Bacillus cereus m1293]
 gi|42735645|gb|AAS39583.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217066134|gb|ACJ80384.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228588599|gb|EEK46634.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228646082|gb|EEL02304.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|324324624|gb|ADY19884.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIVLLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32]
 gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVF 232


>gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 218

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G   E               + D+  ++  +   G    +
Sbjct: 6   LIVEDDLSIARLIKLNLNLAGYLTESVEDGLLAFERIQKEKFDLILLDVMI--PGMDGFK 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   I     +P+I ++   S    +D    G DD + KP    E+LAR+ A+ RR    
Sbjct: 64  LMEKI-RPLNIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRYGKV 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I V  + R+ E+ G V  L  +E  +   L+ N+   +++ Q+   ++G+ D
Sbjct: 123 HKLLTYKNITVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI-D 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E   V+ HI+ LRKKL      + + +   +GY ++
Sbjct: 182 YYGETRTVDMHINALRKKL---GLQEEIKTVYKIGYRLE 217


>gi|325277325|ref|ZP_08142950.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324097515|gb|EGB95736.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E  +  E  ++L  S   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLRQGLNEAGFATELASDGETGQFLALSGDHDLLILDVML--PGRDGW 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + + +A    P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGRDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGSRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEE 223


>gi|319763422|ref|YP_004127359.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317117983|gb|ADV00472.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 85/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      +      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGYVADLVPNGTDGLHMALHGAYDLVILDVML--PGLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+    R+      
Sbjct: 61  QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGP 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +    R     G    L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 AGNEGTMLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRMKIDEGHAVKLIQTVRGMGYVLDV 223


>gi|288921148|ref|ZP_06415436.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288347457|gb|EFC81746.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 243

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +          G  +      E    L  +   D+  ++           
Sbjct: 17  LLVAEDDEASRIALARSLERFGYRVLEAADGEAALRLFQTTEVDLVVLDV--AMPRMDGF 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
            +   +R  S+VP+I ++        +   + G DD V KP            R     V
Sbjct: 75  AVLSRLRQTSEVPVIMLTGRAEEVDRVVGLELGADDYVVKPYSLRELVARVRARLRRRPV 134

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A  +R    N     G + +    R+  V GE   L  RE  +L +L  +  +  ++ +
Sbjct: 135 EAPPQRTGDGNEPLIYGDVSIDLRAREVAVAGERVDLTAREYELLAFLARHPRRVFSREE 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   ++G      +   V  H+ ++R K+         V + R +GY  D
Sbjct: 195 LLEQVWGTR--FQDPATVTEHVRRVRTKVEGRPPQRRLVTTLRGMGYRFD 242


>gi|259417324|ref|ZP_05741243.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259346230|gb|EEW58044.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKRLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  +Q+P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           VA             E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VATDEVGTAPETKVMERGHLRMDPLRHAVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADADFAAIETLYGIGYRYNE 232


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +   +              DV  ++      G   ++
Sbjct: 6   LLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVM--MPGVDGIQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        ++  D+G DD V KP    E+ AR+ A+ RR+  
Sbjct: 64  VCRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAP 123

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  G +                R     G    L R E  +LE L  N G  +   
Sbjct: 124 VPEPTTEGTVFDATLAVADLRLDPSARRVWRGGTELELTRTEFDLLELLARNAGIVLDHG 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+S I+G +D       +  +I  LR+K+        + + R +GY++
Sbjct: 184 TIYSRIWG-YDFGPGSKNLAVYIGYLRRKVDQTGLTPLIHTVRGVGYTL 231


>gi|116253935|ref|YP_769773.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258583|emb|CAK09687.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + L    G       S    + +    + D+  ++A L   GE   
Sbjct: 9   ILIVEDDPPIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML--PGEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   VP++ ++        +   + G DD V KP + RE+LAR+ +I RR   
Sbjct: 67  SICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174
           ++++ E     +FS  R      ++         +   E  IL     N  K + + Q+ 
Sbjct: 127 AHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           S  +      VE   +++HIS++R+K+   L     + + R  GY  
Sbjct: 187 SMTHAGSAGPVE-RSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 232


>gi|15901469|ref|NP_346073.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903517|ref|NP_359067.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|116516130|ref|YP_816903.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148988676|ref|ZP_01820109.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|149001907|ref|ZP_01826861.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149011512|ref|ZP_01832759.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|168487278|ref|ZP_02711786.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168575180|ref|ZP_02721143.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|169833223|ref|YP_001695024.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|225855061|ref|YP_002736573.1| response regulator [Streptococcus pneumoniae JJA]
 gi|225859389|ref|YP_002740899.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225861461|ref|YP_002742970.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649183|ref|ZP_04523435.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237822260|ref|ZP_04598105.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229234|ref|ZP_06962915.1| DNA-binding response regulator [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254511|ref|ZP_06978097.1| DNA-binding response regulator [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|303253986|ref|ZP_07340106.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|303258559|ref|ZP_07344539.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262649|ref|ZP_07348589.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263588|ref|ZP_07349510.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303266968|ref|ZP_07352843.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269868|ref|ZP_07355612.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307068261|ref|YP_003877227.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127843|ref|YP_003879874.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|5830520|emb|CAB54566.1| response regulator [Streptococcus pneumoniae]
 gi|14973122|gb|AAK75713.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459132|gb|AAL00278.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076706|gb|ABJ54426.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147759716|gb|EDK66706.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147764502|gb|EDK71433.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147925877|gb|EDK76952.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|168995725|gb|ACA36337.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|183569849|gb|EDT90377.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183578765|gb|EDT99293.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|225721513|gb|ACO17367.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225723119|gb|ACO18972.1| response regulator [Streptococcus pneumoniae JJA]
 gi|225726677|gb|ACO22528.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794621|emb|CBW37069.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301802336|emb|CBW35090.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302599074|gb|EFL66100.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|302636205|gb|EFL66700.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640060|gb|EFL70515.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640603|gb|EFL71006.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643485|gb|EFL73757.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302646626|gb|EFL76851.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|306409798|gb|ADM85225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484905|gb|ADM91774.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|327389818|gb|EGE88163.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332073967|gb|EGI84445.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332199663|gb|EGJ13738.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332200194|gb|EGJ14267.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332201060|gb|EGJ15131.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 265

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLEK 220


>gi|257063312|ref|YP_003142984.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790965|gb|ACV21635.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   ++D    L   +G   +    ++       ++   D   I+  L       
Sbjct: 9   ILVIEDDPSLRDVICELVAREGWRQVRHAGTVADALRAIATWSPDAMLIDVML--PDGNG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R +R  SQ P I +S     +  L     G DD + KP   RE++ R+AA+ +R  
Sbjct: 67  FDLLRTVRQTSQAPAIIVSARDEDEARLRGLGLGADDYITKPFLPRELVLRLAAVLKRTY 126

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +                  G      G    L  +E  +L  L+ +RG  V    +  A
Sbjct: 127 GAAAEPHLVALGDCTVDLGSGEVTRADGSGETLTAKEHALLSRLVRSRGSIVTSDDLAQA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G        N +  H+ +LR+K+ +       + + R LGY +
Sbjct: 187 VWGT--SFGYANALMVHVRRLREKIEDDPSDPQWILTVRGLGYRL 229


>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
          Length = 232

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVML--PGIDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           E+ + IR  + ++ +I ++     +  +     G DD + KP         +  +     
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
 gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +    + D+  I+          +
Sbjct: 6   ILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEKIDLLVIDVM--MPKLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  RATLKIREANNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + A      V+  G                   L   E  IL  L+ N+GK  +  QI
Sbjct: 124 LGSTANHKNEAVYEVGGLSINDDLKEVTVDGGPVKLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + +I+      V+ N V  HI  +R+K+  N      +     +GY ++ 
Sbjct: 184 YESIWNEDAIGVD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 232


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 46  LVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMML--PDMDGLT 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+++      + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 224 WS-YDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 264


>gi|15963797|ref|NP_384150.1| transcriptional regulatory protein [Sinorhizobium meliloti 1021]
 gi|307310985|ref|ZP_07590630.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307322004|ref|ZP_07601383.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|1705850|sp|P50350|CHVI_RHIME RecName: Full=Transcriptional regulatory protein ChvI
 gi|987505|gb|AAB07685.1| chvI [Sinorhizobium meliloti]
 gi|15072972|emb|CAC41431.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021]
 gi|306892342|gb|EFN23149.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899665|gb|EFN30292.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAAN 121

Query: 122 SNNRA----------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
               A                E G + +  +      + E   L   E  IL  L    G
Sbjct: 122 REAAAGGTGPAKNADTPSRSLERGQLVMDQERHTCTWKNESVTLTVTEFLILHALAQRPG 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 VVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRF 236


>gi|332365635|gb|EGJ43394.1| two component response regulator [Streptococcus sanguinis SK355]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +      L   +  S++     E           D+  ++  +    G   
Sbjct: 3   LLLVEDEADLNRSLTKLLKKEHFSVDSAFDGEEALEFLEMLDYDLIILDIMMPRMDGFAF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R       V ++   D    +       +    V            R     ++ +
Sbjct: 63  LEKIRQAGKQVIVLVLTARDSLEDKIRGLDLGADDYLVKPFEFEELLARLRALLRRQQRE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + + + + G I +    +      +V  L  +E  +LEYL  N+   +++ QI   ++  
Sbjct: 123 LVSQKIDLGEIVLDLTKKAVLKDDQVLELTAKEYEVLEYLARNQDHILSREQIRDHVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   E N+++  I  +R+K+        + +KR +GY I
Sbjct: 182 FDYEGESNIIDVLIKNIRRKIDQDKKQSIIHTKRGVGYVI 221


>gi|332707207|ref|ZP_08427260.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332353941|gb|EGJ33428.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 830

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +      +  +    +      E       +   D+  +E  L       +
Sbjct: 3   LLLVEDDNALALTLSKVLREQNYIVNIAGDGEEGCEYAQAFTYDLIVLEVDL--PKLDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S    I +    +        ++  DD + KP   + +L R+  + R   V
Sbjct: 61  SLCKRLRQASYDRGILLLLSQAATAEQVKLNAEADDYIVKPFTAKNLLTRIRTLLRHHSV 120

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S  R              +   +G++  L  +E  +LE  +++  +  +++ I   ++  
Sbjct: 121 SGLRLLEWGDVCLDPSTCEVTYKGQLLHLSPKEYGLLELFLSHPRRVFSQSFILGHLWSF 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D       V +H+  LR+KL++    D +++   +GY +
Sbjct: 181 ED-PPSPETVRAHVKGLRRKLKSVEADDMIETVYGMGYRL 219



 Score = 58.9 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 79/218 (36%), Gaps = 19/218 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           + +DD  LV +         GV +      +       +   D+  ++  +    G ++ 
Sbjct: 538 LAVDDDPLVLESIRHFLQPLGVQIITLEEPDQFWEQLEATGPDLLILDLDMPQFNGIELC 597

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R  R    +P++ + ++   +T    + +G DD + KPI   E++ RV     R K+
Sbjct: 598 QVVRNDRIWHGLPILLLCEHLDSETIHRIYQAGADDYIFKPITKSELVTRVFHRLERTKL 657

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI----FSAI 177
             +  ET  +   ++ R              E   L  L     + +    +       +
Sbjct: 658 LRSLGETDQLTGVANRRQ----------STIEFNRLLRLSQRYHQPLCYALLDLNNLKQV 707

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
              F   + + ++     +L + LR K   + + ++  
Sbjct: 708 NEQFGHVMGDRML----RRLGQILRQKFRSEDIVARWG 741



 Score = 42.7 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 6/65 (9%), Positives = 19/65 (29%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ID    +         +  + ++          +      DV  ++       E  
Sbjct: 411 LILVIDGDVQLTQQLEREAVNWDMQVKVVLDPREARVVMDQEIPDVVLLDLMFPNYPEVG 470

Query: 61  LELPR 65
           + L +
Sbjct: 471 IALLK 475


>gi|315646887|ref|ZP_07900002.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277817|gb|EFU41141.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 218

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +           +                   D+  ++  +        
Sbjct: 5   ILIVEDDIHISNIIKMNLNIVNYATTEVYDGLAALEAIERETFDLILLDVMI--PKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I+ H  +P+I ++   S+   +     G DD + KP    E+LAR+  + RR   
Sbjct: 63  ELMSKIQRHR-IPVIFLTAKNSVYDKVTGLKLGADDYMVKPFEAIELLARIETVLRRYGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   ++V  D R+  +  +   L  +E  +L  L+ N+   +++ Q    ++G  
Sbjct: 122 EESMMQFQDVQVNMDKREVTIHSQPVELTPKEYDLLVVLLKNKNIALSREQFLDKVWG-G 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E   V+ HI  LRKKL      + + +   +GY ++
Sbjct: 181 DYFGETRTVDMHIKSLRKKL---HLQENIKTIYKIGYRLE 217


>gi|188534102|ref|YP_001907899.1| DNA-binding transcriptional regulator PhoP [Erwinia tasmaniensis
           Et1/99]
 gi|188029144|emb|CAO97016.1| Two-component response regulator of virulence determinants [Erwinia
           tasmaniensis Et1/99]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LVVEDNPLLRHHLAVQLREMGHQVDAAEDAKEADYFLNEHTPDITLVDLGL--PDEDGMT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A + R   
Sbjct: 62  LIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P ++    R+  +   +  L   E  ILE L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIITLQPFQIDLSRREVTIHERLLKLTAFEYTILETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R LGY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYAQEVITTVRGLGYRFD 221


>gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V      +  ++G  +    +             D+  ++  L  K     
Sbjct: 4   ILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKNTYDLILLDIMLPFK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + +R  S +P+I IS    + T +D    G DD + KP    E++ARV+       R
Sbjct: 62  EILKEVRQFSDIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRRSHR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + V +D +   V      L  +E  I+E L+ NR K   K  ++  I+
Sbjct: 122 KTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYETIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  ++N V++HIS LR KL+      + +++   LGY +
Sbjct: 182 -QDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWGLGYRL 223


>gi|254773313|ref|ZP_05214829.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD A++ +        +G ++   +          + R DV  ++  L    G  VL
Sbjct: 12  LVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDVMLPDMSGLDVL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    + Q+P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 72  HKLRE--ENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 129

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 130 TTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 190 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 230


>gi|182414366|ref|YP_001819432.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841580|gb|ACB75832.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD     +       + G +               +A  D+  ++  L    G +V
Sbjct: 5   ILLVDDEPDALEVLGFKLREAGFAPSFAADGAKALAAVRAAPPDLIVLDLMLPAVDGLEV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            ++ R   A + +P++ ++   +    +   + G DD V KP   RE    + ++    +
Sbjct: 65  CKILRRDPATAAIPILMLTAKAAEMDRVLGLELGADDYVTKPYSPRELVLRIKKLLTRTK 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +   G + +        V G    L   E ++LE L   RG+   + ++   +
Sbjct: 125 ASDDPLAQLRIGGLEIDVPRHQVTVDGAPVTLTATEFKLLEILARRRGRVQTRDRLLQDV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  ++   V++H+ +LR+KL        +++ R +GY  
Sbjct: 185 WG-YDNPIDSRTVDTHMRRLREKLGETAS--LLETIRGVGYRF 224


>gi|170757163|ref|YP_001781483.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122375|gb|ACA46211.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D         + +++           +  +    V  ++          +
Sbjct: 7   LVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIM--MPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
                IR  + +P+I +S        +   + G DD + KP +        + ++     
Sbjct: 65  RTCMKIRERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQLRRYTN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  V ++      + +        V G+   L   E  IL  L  N G+    +QI
Sbjct: 125 LGNFPKTVDDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSSQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++        EN V  HI +LRKK+  +      +     +GY ID 
Sbjct: 185 YEYVWNEPSFK-TENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233


>gi|254366310|ref|ZP_04982354.1| hypothetical two component transcriptional regulatory protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|308406239|ref|ZP_07669548.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu012]
 gi|134151822|gb|EBA43867.1| hypothetical two component transcriptional regulatory protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|308364040|gb|EFP52891.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu012]
 gi|323717630|gb|EGB26832.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CDC1551A]
          Length = 246

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G ++                R DV  ++  L    G  VL
Sbjct: 24  LVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDVL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    +  +P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 84  HKLRS--ENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 141

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 142 TTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 202 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 242


>gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +      L  +     + +   L+  G   L
Sbjct: 3   ILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEP--ALLLLDLMLPGMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           EL + +R   + VP++ ++    +   +     G DD + KP    E    +  +    R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N  +   + +  +       G+  PL  +E   LE LM+  G+  ++ +I S +
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +E    N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 181 WGA-NEDPLTNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 223


>gi|120555233|ref|YP_959584.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325082|gb|ABM19397.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 244

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G+++              + + D+  ++  L   GE  L
Sbjct: 13  ILIVEDDERLADLTREYLENNGLTVSLETHGGAAVERIRNEQPDLVVLDLML--PGEDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            + R +R     P+I ++        +   + G DD + KP+  R +LAR+ A+      
Sbjct: 71  SICRRVRPFFNGPIIMLTARTDDLDQVLGLEMGADDYIGKPVQPRVLLARIRAMLRRVET 130

Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         R +   + V    R+  +  E   L   E  +L  L +N G+ +++
Sbjct: 131 SPVSGQETSGEEPVRLQFNDLVVDRSMREAWLSDESIDLTSAEFDLLWLLASNAGRVLSR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +IF+A+ G+ +   ++  ++  +S++R K+ +       + + R  GY  
Sbjct: 191 EEIFTALRGI-EYDGQDRSIDVRVSRIRPKIGDDPIHPRRIKTVRSKGYLF 240


>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|317499180|ref|ZP_07957456.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291560744|emb|CBL39544.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893539|gb|EFV15745.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +           +       +  I+          L
Sbjct: 6   ILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVM--MPKMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
                IR    +P+I +S        +     G DD ++KP    E              
Sbjct: 64  SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +  +   G + +   G+   V GE   L   E +I+  LM N G+  +  +
Sbjct: 124 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++     A  EN V  HI ++R+K+  +      +     +GY I+ 
Sbjct: 184 IYERVWNEEAYA-TENTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIEK 233


>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G ++    +      L      D+  ++   I      L
Sbjct: 4   ILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDI--IMPKMNGL 61

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRR 118
           +L R  R       P+I ++   +    +    +G DD + KP   +E+ AR+ A + R 
Sbjct: 62  DLCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRRS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +    G + +  + R          L  +E R+LE+ M N+G  +++  +   ++
Sbjct: 122 KEKRTSELVCGDLILDCNTRRARRGDHEMELTVKEYRLLEHFMNNQGVVLSRVNLLKHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     NVV+ +++ LR K+        + +   LGY ++
Sbjct: 182 DK-NFDTNTNVVDVYVNYLRTKIDKDYENKLIHTVVGLGYIME 223


>gi|254512791|ref|ZP_05124857.1| two component transcriptional regulator, winged helix family
           [Rhodobacteraceae bacterium KLH11]
 gi|221532790|gb|EEE35785.1| two component transcriptional regulator, winged helix family
           [Rhodobacteraceae bacterium KLH11]
          Length = 237

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++      G  G  +   +  E    L S+   DV  ++       E  L
Sbjct: 8   ILVCDDEVDVREMLQEYLGKRGFRVSAASGGEELRGLLSANSVDVIIMDIN--MPKEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  +  P+I ++    +   +   + G DD + KP+  RE+ AR+ AI RR  +
Sbjct: 66  SILRSLRPENTTPVIMLTAAGDVVDRIIGLEMGADDYLGKPVDLRELEARIKAILRRETL 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE----------VFPLPRRERRILEYLMANRGKRVAKT 171
           +   A+       +      +  E            PL   E  +L+    NRG+ + + 
Sbjct: 126 NETAAKESTDVNGAPFGAFTLDKEAAKLLAADGSEVPLTAMEYSLLKVFAENRGRVLNRD 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           Q+    +        +  ++  IS+LR+KL       + + + R +GY
Sbjct: 186 QLLEQAHDRS-WDPFDRSIDIRISRLRRKLEANPEKPEIIRTVRGIGY 232


>gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320]
 gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response
           regulator) [Proteus mirabilis HI4320]
 gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +    + +  + L +     +  ++  L   GE  L 
Sbjct: 8   LIVDDDLRLRSLLERYLTEQGFQIRTAANSDQMDRLLTRESIHLIVLDLML--PGEDGLS 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R  ++ +P+I ++        +   + G DD ++KP + RE        +  +  
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQAN 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       N     G  ++    R+   + +  PL   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSQDNAIVSFGKFKLNLGTREMFHEDQHMPLTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            S   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 186 MSLARGR-EYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGYVF 232


>gi|15966090|ref|NP_386443.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075360|emb|CAC46916.1| Two-component response regulator [Sinorhizobium meliloti 1021]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G  +      +           D+  ++      GE  +
Sbjct: 15  LLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVM--MPGESGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R    VP+I ++      + ++  ++G DD + KP   RE++ R+  I RR + 
Sbjct: 73  ALTQSLRQIKSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRRNQP 132

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +           P       ++     +   L  RE+ I+       G+ + + ++    
Sbjct: 133 TQTHKVDQVIFGPYTFSVVRKELRRGADHIRLTDREQEIMTLFSQRAGETIPRHELI--- 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+ +       + + R +GY +
Sbjct: 190 --GDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRL 231


>gi|239991978|ref|ZP_04712642.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 236

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++ +D     +        +G ++                  D+  ++  +    G  V+
Sbjct: 1   MVAEDDEKQAELVRRYLEREGHAVRIVGDGLAVLDAVRHREPDLLVLDVMMPRADGLDVV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R      ++P++ ++   +    L   D G DD + KP   RE++ARV  + RR + 
Sbjct: 61  RVLRS--EDRELPVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRR 118

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                              V  D  +  V G        E RIL  L A   +  ++ ++
Sbjct: 119 PATPEPVAEDPVLRVGELVVDPDRHEVSVGGRTVECTPGEFRILAALAAGPDRVFSRQRL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G FD  +    V+ H+  LRKK+       + + +   +GY +
Sbjct: 179 LEELHG-FDRYISARTVDVHVMNLRKKIERAPRRPERLLTVFGVGYKL 225


>gi|229163396|ref|ZP_04291347.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619965|gb|EEK76840.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 9   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 67  YWCRQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 127 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 187 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIQNAIVTKRGYGYALLTEW 234


>gi|242309430|ref|ZP_04808585.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
 gi|239524001|gb|EEQ63867.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   ++   +      G+     +S +    +  S +   ++ ++  L       
Sbjct: 4   ILIVEDDLDMQKLLVDYLKKSGMEAVATDSPKEALEMLKSKQNFHLAVLDIML--PEMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + +R  S +P+I  S    + + +  F+ G DD + K     E++AR+ A+ +R  
Sbjct: 62  LELCKKMREISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N     G + V S+ R   + G    L   E  IL  L++N+GK  ++  +  AI   
Sbjct: 122 -ANQVLRCGELEVDSNKRKVTLDGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAI-SS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                    +++HI  LR KL +       + S   +GY  
Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKF 220


>gi|121594772|ref|YP_986668.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606852|gb|ABM42592.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D ALV  G  A     G + +   S+   +   +S + D   ++  L       +
Sbjct: 3   ILIVEDNALVASGIQAGLELHGFTSDTAGSVAQAQAHMASRQFDACVLDLGL--PDGDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            L R  RA    +P++ ++   +++  +  F +G DD + KP      +L   A + R  
Sbjct: 61  SLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLRRAG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G  +V     +    G    + RRE  +L+ L+   G+ ++  Q+  ++YG
Sbjct: 121 GRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D+ V+ N V  H+  LRKKL    G D +D+ R LG+ +
Sbjct: 181 L-DQDVDSNTVNVHVHHLRKKL----GADVIDTVRGLGFRL 216


>gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36]
 gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G +++            +S   DV  ++  L       L
Sbjct: 3   LLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRML--PEIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222


>gi|30264508|ref|NP_846885.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47529970|ref|YP_021319.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187332|ref|YP_030584.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481533|ref|YP_038490.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65321809|ref|ZP_00394768.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479595|ref|YP_896746.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871961|ref|ZP_02216602.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167640712|ref|ZP_02398972.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688676|ref|ZP_02879881.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709121|ref|ZP_02899548.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653965|ref|ZP_02936006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196034304|ref|ZP_03101713.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039317|ref|ZP_03106623.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044880|ref|ZP_03112114.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218905634|ref|YP_002453468.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225866421|ref|YP_002751799.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817220|ref|YP_002817229.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917078|ref|ZP_04080636.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929485|ref|ZP_04092505.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935759|ref|ZP_04098571.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948154|ref|ZP_04110438.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093513|ref|ZP_04224615.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229123980|ref|ZP_04253172.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229186681|ref|ZP_04313840.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229604230|ref|YP_002868724.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684197|ref|ZP_05148057.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724632|ref|ZP_05186415.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736544|ref|ZP_05194250.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254751319|ref|ZP_05203356.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757651|ref|ZP_05209678.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055947|ref|YP_003794158.1| two-component response regulator [Bacillus anthracis CI]
 gi|30259166|gb|AAP28371.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505118|gb|AAT33794.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181259|gb|AAT56635.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333089|gb|AAT63735.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118418820|gb|ABK87239.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712251|gb|EDR17787.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511284|gb|EDR86670.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170125973|gb|EDS94873.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667362|gb|EDT18120.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081020|gb|EDT66098.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195992846|gb|EDX56805.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024368|gb|EDX63041.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029944|gb|EDX68545.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538158|gb|ACK90556.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786077|gb|ACO26294.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003846|gb|ACP13589.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596784|gb|EEK54445.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228659282|gb|EEL14930.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228689843|gb|EEL43648.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228811512|gb|EEM57849.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823816|gb|EEM69636.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830165|gb|EEM75782.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842496|gb|EEM87586.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268638|gb|ACQ50275.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378116|gb|ADK07020.1| two-component response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR
           [Edwardsiella tarda FL6-60]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILL--PDVNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ R++R A+  +P++ +S   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  EIVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++     + V    R     G+   L  +E  ++ + + ++G+ + ++ I S ++
Sbjct: 121 PPIPESQFHVADLTVELLSRKVTRGGKRITLTGKEFTLVTFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDLDFEPKLIQTVRGVGYLLE 222


>gi|257872842|ref|ZP_05652495.1| two-component transcriptional regulator [Enterococcus casseliflavus
           EC10]
 gi|257876247|ref|ZP_05655900.1| two-component transcriptional regulator [Enterococcus casseliflavus
           EC20]
 gi|257807006|gb|EEV35828.1| two-component transcriptional regulator [Enterococcus casseliflavus
           EC10]
 gi|257810413|gb|EEV39233.1| two-component transcriptional regulator [Enterococcus casseliflavus
           EC20]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +    +   D  +++   S      L      D+  ++  L   G+   
Sbjct: 11  ILIIEDNNEISEMLATILAAD-YTVQQAYSGTEGLLLFQQDAFDLILLDRML--PGKDGT 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP+I ++             +G +D + KP +  E+ AR+    R  K 
Sbjct: 68  QVLQEIRQTSTVPVIILTALDEPADVSTLLLAGANDYLTKPFNVEELKARIIVQLRTNKQ 127

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   A       I++  D    +       L ++E  I   L+AN  K   K  ++ A++
Sbjct: 128 APPVASSLSYKNIQLLPDSFQLQRGEATVQLKKKEFEIFSLLLANPKKVYTKEMLYEAVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                  EEN +  HIS LR K++        +D+   +G  +
Sbjct: 188 QEP-YYGEENTINVHISHLRSKIKTLDPEEAYIDTVWGIGIKL 229


>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     A   D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGL--PKIDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A + R  
Sbjct: 61  SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L Y+M ++ + +++T++   +Y 
Sbjct: 121 GHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFMGRLRKKI----GTERIETVRGLGYRL 216


>gi|27378670|ref|NP_770199.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351819|dbj|BAC48824.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + +   A    +G              L  + + D+  ++          
Sbjct: 4   LILIAEDEPQICEILDAYLTREGFRTVRAGDGRAALDLHLALKPDLILLDV--TMPRLDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114
            E+   IR     P+I I+        L     G DD V KP +  E++AR         
Sbjct: 62  WEVLAEIRRRGDTPVIMITALDQDIDRLQGLRIGADDYVVKPFNPVEVVARTKAVLRRAG 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +         +       + +   +  P+   E R+L ++     K   ++++ 
Sbjct: 122 RSSAGGMLRVDCVAIDLDGHMVKVEVDGTAQPLPVTLTEFRLLAHMARTPTKAFTRSELV 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L      E  V+SHIS LRKKL        +   R +GY +
Sbjct: 182 DAC--LPGSDALERTVDSHISNLRKKLDVAGAPGMLSGVRGIGYRL 225


>gi|315634592|ref|ZP_07889876.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
 gi|315476540|gb|EFU67288.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D AL+ +G        G +++ F   +       +A  D   ++  L    G  V
Sbjct: 3   ILLIEDDALIGNGIQIGLTKSGFAVDWFTDGKSGLAAAQAAPYDAVVLDLTLPKMDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R       VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 63  LQAWRKNGQ--DVPVLILTARDTLDERITGLQRGADDYLCKPFALVEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +   ++   + R   +  +   L  RE ++LE  M N+ + + +  I   +Y 
Sbjct: 121 GHASPIIQHSCVKFDPNQRKVLLNEQEIALTTREYKLLELFMLNKERVLTRDFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 NWDDEVNSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
 gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
          Length = 219

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++  +    +    + GF           +   D+  ++  L    +  
Sbjct: 1   MIYVVEDDKAIRNLVLYALKEKNYQVRGFEDGLNVVESLKNENVDLLILDIML--PEKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +E+ + +R  S +P+I ++        +   +SG DD + KP    E+++R+ A+  R  
Sbjct: 59  IEILKEVREFSDIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSE 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K          IRV    R  ++ GE   L  +E  +L   ++N G  + +      I+G
Sbjct: 119 KKDGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++      + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSAGIH--IKTVRNLGYKL 216


>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PDLDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +             +   DV  ++  L       +
Sbjct: 4   ILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ +
Sbjct: 62  EVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   +     V           R      EV  L +RE  +L  LM N    +++  + 
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|15807405|ref|NP_296136.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460233|gb|AAF11960.1|AE002072_2 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 236

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          D   +    +L   +    +    +  ++  L       L
Sbjct: 22  ILIVEDDPHLGPLLRDYLSAD-YQVHHAPTLRDAQAWLGTHSPQLVLLDLNL--PDGDGL 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R +S  P++ +S    +Q  +   ++G DD + KP    E+ AR+ A+ RR   
Sbjct: 79  DLVQALRQYSSTPVLVLSARTGVQERVAGLNAGADDYLTKPFAMPELDARITALLRRTAA 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                        +      V  +   L   E RILE +M    +  ++  I S +YG  
Sbjct: 139 GTGVNLGNTALS-TSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW- 196

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    N VE  IS+LRKKL +      + + R +GY +
Sbjct: 197 -ETPNSNSVEVRISQLRKKLESAGSDLRIRTIRNVGYVL 234


>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
 gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D   A    +  S++  +  E   +  +    D++ I+  L       +
Sbjct: 3   ILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGL--PKMNGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+  R     +++P++ ++     Q  ++  D+G DD + KP H  E++AR  A I R  
Sbjct: 61  EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     GPIR+ +  +   +      L   E R+LEYLM N  K ++K+++   IY 
Sbjct: 121 GQANPEMIAGPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKK+      +P+++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVLRLRKKIDPDGTLNPIETLRGRGYRL 220


>gi|115526550|ref|YP_783461.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520497|gb|ABJ08481.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G+     ++    +    + R D+  ++      GE  L
Sbjct: 10  ILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVM--MPGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R + A    P++ +S        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 68  SAARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSER 127

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                          A         D            L   E ++L   +      + +
Sbjct: 128 REPLAGTLGGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLERPRFVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            Q+     G   E V +  +++ +S+LR+K+ +       + + R  GYS+
Sbjct: 188 EQLLDITSGRSAE-VFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSL 237


>gi|330974194|gb|EGH74260.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG ++    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + RE++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S N       +                +    V  L   E +IL  L+    K   + ++
Sbjct: 124 SGNNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVENVLVTVRSVGYRF 228


>gi|296119479|ref|ZP_06838037.1| DNA-binding response regulator PrrA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967362|gb|EFG80629.1| DNA-binding response regulator PrrA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +          +  + +  ++      L  S    +  ++  L    G  V
Sbjct: 4   ILIVEDDQDIASFIKRGLEAESYACDIADNGALALGLAQSNTYQLIVLDLSLPLLDGTDV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L   R   A   VP+I ++   +L+  +   + G +D + KP    E+LARV    +   
Sbjct: 64  LTKLR--DAGVDVPIIVLTARTALKDRIRVLEGGANDYMPKPFQFAELLARVRLRLQASA 121

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +       +V G+   L RRE  +LE  M +    ++
Sbjct: 122 TTAEAESPAAAKEYGTLHHGELTLDMRQHRVKVDGKWKDLSRRELGLLETFMRHPRMVLS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ S ++GL D     NVV+ +I+ LRKK+    G   +++ R  GY +
Sbjct: 182 RAQLLSHVWGL-DFDPGSNVVDVYIATLRKKI----GAQRLETIRGAGYRL 227


>gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4]
          Length = 252

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++      DV  I+  L       L
Sbjct: 30  ILVIEDDLEAAAYMTKAFREAGIMADHASDGEAGLFMGCENTYDVMIIDRML--PRRDGL 87

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R  S   P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 88  SVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +     +    G+   L  RE R+LEYLM N G+ V +T +   ++
Sbjct: 148 TPEQDMIYRVGDLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 208 D-YHFDPQTNVIDVHVSRLRSKIEKDFDRPLLKTVRGAGYMI 248


>gi|223937743|ref|ZP_03629644.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223893536|gb|EEF59996.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++         +G  +    +        +    D   ++  L       L 
Sbjct: 12  LIIDDELQIRRLLRVYLERNGYEVIEAPTGIDGIGEVARCHPDAVLLDLGL--PDMDGLA 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + + +R  SQVP++ +S        +   D+G DD + KP    E+    RVA  + +  
Sbjct: 70  VLKRLREWSQVPVLVVSVRGQDDDKIVALDNGADDYLTKPFSTGELLARLRVAHRHAQPS 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + V    R  +V G+   L   E  +L   + + GK +   Q+   I+G 
Sbjct: 130 SPPAVFRARNLEVDLATRTVKVNGQKVKLTATEYSLLNMFVRHAGKVLTHGQVLREIWGP 189

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            D       +  +++ LR+K+  N    + + ++  +GY +
Sbjct: 190 ADADK-TGYLRVYMAYLREKIELNPAEPELLITEPGVGYRL 229


>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGL--PEMDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +    RA  + +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM +  + V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTAASKASVDGTTLKLTSHEFRLLSYLMHHMDQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GVELIETVRGLGYRM 216


>gi|158425598|ref|YP_001526890.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158332487|dbj|BAF89972.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    S             D+  ++      GE  +
Sbjct: 20  LLVVDDDNRIRTLLSRFLSENGYRVTTAASAAEARGRMEGLEFDLIVLDVM--MPGETGI 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +RA S +P++ ++        +   ++GVDD V KP   RE+L R+ +I +R   
Sbjct: 78  DFARSLRATSSIPILMLTARSETMDRITGLEAGVDDYVAKPFEPRELLLRIGSILKRTAP 137

Query: 122 SNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +A                     GE   +  RER +L  L    G+ V +       
Sbjct: 138 APQKAIESVRFGDFTFHIGRGELTRLGEPVRITERERDMLRALAEQPGETVPRLA----- 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                 A  E  V+  +++LR+K+  +      V + R LGY +
Sbjct: 193 -LAAGGAASERAVDVQVNRLRRKVERDPANPSFVQTVRGLGYRL 235


>gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G   +     E    +      D+  ++  L       L
Sbjct: 3   ILIIEDDRETASYLTKALKEAGHVADHAGDGETGLNMAEGRDYDLLIVDRML--PKRDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R      P + +S    +   ++   +G DD + KP    E+   A V    R 
Sbjct: 61  SVIADLRKSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +     +    G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 TGEVETSYQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEREFDGPLLHTVRGSGYIM 221


>gi|108801194|ref|YP_641391.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870326|ref|YP_940278.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437173|ref|YP_001072864.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771613|gb|ABG10335.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696415|gb|ABL93488.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126236973|gb|ABO00374.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +    +        +  + DV  ++  L       +E
Sbjct: 5   LVVDDEPQILRALKINLSVRGYEVTTAATGAEALRSAADHKPDVIVLDLGL--PDMSGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        ++  D+G DD V KP    E LAR+ A  RR    
Sbjct: 63  VLAGLRGWLSAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRATKE 122

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  E         V    +     G    L   E  +LE L+ +RGK V + ++   ++
Sbjct: 123 SDGDEPVVVTGSFTVDLAAKRVVKNGAEVHLTPTEWGMLEMLVRHRGKLVGREELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G    A E + +  ++++LR+KL +       + ++  +GY  
Sbjct: 183 G-PAYAKETHYLRVYLAQLRRKLEDDPSRPRHLLTEAGMGYRF 224


>gi|330991829|ref|ZP_08315778.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760850|gb|EGG77345.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp.
           SXCC-1]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D        + + +             S     +  ++  L   GE  L
Sbjct: 7   ILIIDDDREIRDLLARFLERNELRVTTARDGHEARRRWSEGHYQLVILDLML--PGESGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  + VP++ ++        +   + G DD V KP + RE+LAR+ A+ RR   
Sbjct: 65  DISRWLRTQANVPIVMLTAMGDDTDRIIGLELGADDYVPKPFNPRELLARIRAVLRRASD 124

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +      +                     G   PL   E  +L  L+    + + +  
Sbjct: 125 TPDPRSVPVLHTLRFAGWMLDTGRRRLLNPDGVEVPLTGGEYDLLLALLERANRVMTRDM 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +F  + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 185 LFDLLRGRQAGPFD-RAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232


>gi|319947454|ref|ZP_08021686.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746394|gb|EFV98655.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++     +    G  +   +               +  ++  L        
Sbjct: 4   ILLVEDDETIRQQVKKIMEQWGFEVIAVDDFMDVLGTFVQTNPHLILMDIGLPL--YNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP         +  +      
Sbjct: 62  HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDYVTKPFDPNVLLAKIQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E     +     D   +GEV  L + E +IL  L    G  VA+  +   ++
Sbjct: 122 FGTDQDLLEHRGAILNLKSMDLVYEGEVVNLTKNEFQILRILFEKAGSVVARDDLMKELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL        +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEAGLEHFIETKKGIGY 220


>gi|326314873|ref|YP_004232545.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371709|gb|ADX43978.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 237

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------ 55
            ++++D A+++        D G  ++   +L   +        D   ++  L        
Sbjct: 3   ILVVEDDAVLRGVMQRSLADAGHRVDVAATLAEADHFWKVQPFDAVLLDLNLPQDAAQAS 62

Query: 56  KGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L + R  RA     P++ ++     +  +   D+G DD + KP    E+ AR+ A
Sbjct: 63  PVGSGLAVLRAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLAEVEARLRA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + RR + +++R   G + +    R   + G+ F LP RE  +L  LM   G+ V+K  + 
Sbjct: 123 LVRRTQGTDDRTSAGTLVLDRRARRFTLHGQPFELPAREFEVLWELMTPPGRVVSKRSLS 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   FD+ + +N +E+ IS+LRKKL+       + + R LGY ++
Sbjct: 183 DKL-SDFDDMLGDNALEAFISRLRKKLQGSGAG--IRTLRGLGYMLE 226


>gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens
           FD-1]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    +   +  S++             +   D   ++  L   G   +
Sbjct: 3   LLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIML--PGMNGI 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E+ R + + H   P++ ++    ++  ++  D G DD + KP    E+    R     + 
Sbjct: 61  EVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRRKG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  +  +   + +  D      +G    L  +E +I+E L++N  + + K +I   I+
Sbjct: 121 EIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERIIEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++  VE N +E +IS LRKKL +      + + R +GYS++
Sbjct: 181 G-YESDVEYNNIEVYISFLRKKLASISAPVQIKTARGIGYSLE 222


>gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   + +         G  ++  N  E       S    D+  ++          
Sbjct: 10  ILVIDDDLELTEMLSTYLSSMGYQVQVRNDGEEGLSEAVSGRHYDLILLDVM--MPKMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R     P++ ++        +   + G DD + KP +HRE++AR+ AI RR  
Sbjct: 68  FDVLKKLRVSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHN 127

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I +    +  +V      L   E  IL  LM N  +RV K +I 
Sbjct: 128 LSSTGGAVEQDLFVNGIFLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEIS 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I G   +A +   ++ H+S LRKK+      + + + R +GY +
Sbjct: 188 LKILGKPLQAFD-RSIDMHVSNLRKKISAVAVDEKIKTIRGVGYML 232


>gi|226323728|ref|ZP_03799246.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758]
 gi|225207912|gb|EEG90266.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   + +     N       +  +   D+  ++  L     +  
Sbjct: 5   ILIVDDDPAICKLLEKVMHSNELETTTVNCGMDALSILKNHTFDLILMDIMLG--DMEGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116
           E+ + +R      P++ +S       +L     G DD + KP        ++ A +    
Sbjct: 63  EVIKRLRNQGISTPVMIVSGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNK 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  +++  E GP    +        GE   L  +E  +L   M +  +   K  I+  
Sbjct: 123 NLVLDNSDTLECGPFSYDTTTMRFYKNGEELILSSKESALLLLFMKHPQQVFTKDMIYEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++G    AV++N +  +I++LR K+ +       + + R LGY  
Sbjct: 183 VWGNT-VAVDDNAIMVYINRLRGKIEDDRQNPAYILTIRGLGYRF 226


>gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 84/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L       +  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVML--PGLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++ + +R     +P++ ++    ++  +   + G DD + KP    E+    R+      
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRVKIDEGHSIKLIQTVRGMGYVLEV 223


>gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +LIDD   + +         G +++  +  E       S    D+  ++  L       
Sbjct: 6   LLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVML--PKVDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            E+ + +R+    P++ ++        +   + G DD + KP +HRE             
Sbjct: 64  FEVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVD 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + A  +  K   N  E G +++    +          L   E  +L  LM++    V K 
Sbjct: 124 IQAGLQSDKQKQNMIEIGDVQLNIAAQTVACNSHEVELTGTEFAVLRLLMSSSPDLVPKQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I   + G    A +   ++ H+S LRKKL      + + + R +GY 
Sbjct: 184 AISEQVLGRKLAAFD-RSIDMHVSNLRKKLNMFSEQEKIKTHRGVGYV 230


>gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD+A   D         G  +    +     +       D   ++  L   G+  L
Sbjct: 3   ILVADDQAETADFIRRGLSQAGHVVATVGTGTEALFRAMEESFDAIVLDRML--PGKDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +++RA     P+I ++    +   ++  ++G DD + KP    E+ AR+  I RR  
Sbjct: 61  SVLKMLRAGGNRTPVILLTAMGGISDRVEGLENGADDYLTKPFALSELSARLNVIMRRPA 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V           I +    R     G+   L  RE  +LE LM N  + + K  +   ++
Sbjct: 121 VVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELMRNVHRVMTKAMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD     N+VE+HIS+LR KL      D + + R  GY I
Sbjct: 181 D-FDFDPHTNIVETHISRLRAKLNAGFDDDAIITVRGAGYMI 221


>gi|226314253|ref|YP_002774149.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097203|dbj|BAH45645.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 241

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G  S++   + E           D+  ++  L       
Sbjct: 6   ILLVDDEQAILQLLETVLHKEGFHSIDKVKTSEEALCACERKSYDLIVLDVTL--PNMSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           +E    IR  +  P++ +S   +    L  F  G DD V KP +  E            R
Sbjct: 64  IEACPFIRRLTDAPILFLSARDTDFDKLTGFAVGGDDYVTKPFNPMEIVARIKALLRRTR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +            + G  +V     +  V+G+V P P    ++L +L  N  +  +K+
Sbjct: 124 KTSAAVPTAPVQGVYDFGRFQVHEAAGELCVEGKVIPCPSLVFQLLLFLCKNPNRIFSKS 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++  ++G+ +   ++N +  HI ++R+++  +    + + + R LGY +
Sbjct: 184 ELYERVWGV-NSLRDDNTIMVHIHRIRERIEPDPAQPEFLVNVRGLGYKM 232


>gi|259908742|ref|YP_002649098.1| DNA-binding transcriptional regulator PhoP [Erwinia pyrifoliae
           Ep1/96]
 gi|224964364|emb|CAX55873.1| Two-component response regulator of virulence determinants [Erwinia
           pyrifoliae Ep1/96]
 gi|283478715|emb|CAY74631.1| Response regulator phoP [Erwinia pyrifoliae DSM 12163]
 gi|310767361|gb|ADP12311.1| DNA-binding transcriptional regulator PhoP [Erwinia sp. Ejp617]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LIVEDNPLLRHHLAVQLREMGHQVDAAEDAKEADYFLNEHTPDITLVDLGL--PDEDGMT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A + R   
Sbjct: 62  LIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEHAQEVITTVRGQGYRFD 221


>gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 248

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L       L
Sbjct: 26  ILIIEDDLEAAVYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRML--PRRDGL 83

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R  +   P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 144 TPDQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 204 D-YHFDPQTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|197124306|ref|YP_002136257.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174155|gb|ACG75128.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         ++G  ++   +        ++   DV  ++  L       +
Sbjct: 3   LLLVEDEDRVARVLARGLAEEGHQVDVCGTGLAAREQATTIAYDVVLLDWSL--PDLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R+   + P++ ++   S    +    +G DD + KP    E++AR+ A++RR  
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELIARIEALHRR-G 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + + +  GP+ + +  R   V  +   L  RE  ++  L  + G+ +++T++   ++G 
Sbjct: 120 GATDVSALGPVTLDARRRALIVGAQSETLTAREYGLVAELARHAGEVLSRTRLIETVWGQ 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +     NVV+ ++  LR KL         ++S R +GY +
Sbjct: 180 -EFEGNSNVVDVYVGYLRTKLERLGAVGVRIESVRGVGYRL 219


>gi|118463210|ref|YP_882465.1| two component system response regulator [Mycobacterium avium 104]
 gi|118164497|gb|ABK65394.1| two component system response regulator [Mycobacterium avium 104]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       + G   E     E  E L    R D+  ++  L   G     
Sbjct: 22  LVVEDSETIREMVSEALTEVGYHTEARRDGERLEELLDGIRPDLVVLDVML--PGRDGFA 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR    
Sbjct: 80  LIDVIRDWGDIGIVLITARDGLPDRLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGRL 139

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +          G    L   E R+L +L+  RG+ V+  QI + ++G   
Sbjct: 140 PQVIQVGDVTLDPGAGVAARGGHRLDLTATELRVLTFLVEQRGRIVSAGQILNGVWGYDA 199

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+V+ H+S LR+KL    G   + + R +GY +
Sbjct: 200 Y--DPNLVQVHVSGLRRKLEAH-GPRILHTVRGIGYRL 234


>gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida 3523]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+          + 
Sbjct: 8   LVADDDKEIAQFIKTKFVENGIETTVAYDGKEALFLINTNNYDVIVIDWM--MPYLDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +I+R  +   P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRTKQ 125

Query: 122 SNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                                +    G++  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLIDPIKTIRGFGYVI 227


>gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
 gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++          G  +      E    L +    DV  ++  L    +   
Sbjct: 7   ILIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLML--PKKSGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL +  R  +  P+I  +   ++   ++  D G +D + KP    E+    RV    R  
Sbjct: 65  ELCQEFRKLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNREN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I++    +   +  +   L + E  ILEY M NR    ++ +I + ++G
Sbjct: 125 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+        + + R  GY  
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKM--DTESKYIHTIRGFGYIF 222


>gi|254775729|ref|ZP_05217245.1| two component system response regulator [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       + G   E     E  E L    R D+  ++  L   G     
Sbjct: 23  LVVEDSETIREMVSEALTEVGYHTEARRDGERLEELLDGIRPDLVVLDVML--PGRDGFA 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR    
Sbjct: 81  LIDVIRDWGDIGIVLITARDGLPDRLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGRL 140

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +          G    L   E R+L +L+  RG+ V+  QI + ++G   
Sbjct: 141 PQVIQVGDVTLDPGAGVAARGGHRLDLTATELRVLTFLVEQRGRIVSAGQILNGVWGYDA 200

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+V+ H+S LR+KL    G   + + R +GY +
Sbjct: 201 Y--DPNLVQVHVSGLRRKLEAH-GPRILHTVRGIGYRL 235


>gi|261367435|ref|ZP_05980318.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282570203|gb|EFB75738.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +         G        +        +  R ++  ++  L       
Sbjct: 9   LLLVDDTPELLNLLCEHLRAAGYHAIAMAGNCAAAREAFAQRRPELMILDINL--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R +RA + VP + +S   +    L     G DD + KP   +E+L RV  I +R  
Sbjct: 67  FALFRQLRAQADVPALFLSARDADADRLFGLGLGADDYLTKPFLMQELLLRVQHILQRAY 126

Query: 121 VSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S  +     +    +        +         PL   ER IL+ L  NRG  +    +
Sbjct: 127 RSELQCGRSNVLQLGERTVELADAQVRLPDKSTLPLTATERAILQKLGENRGHIITYDAL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             A++G  D    EN +  HI  LR+KL         + + R +GY +
Sbjct: 187 CEAVWGQ-DYYGYENSLNVHIRHLREKLEETPGKPRWLLTVRGIGYKL 233


>gi|111657541|ref|ZP_01408282.1| hypothetical protein SpneT_02001263 [Streptococcus pneumoniae
           TIGR4]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 10  ILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 68  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 128 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 188 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 226


>gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D  L+  G      + G++++  +     +    +   D+  ++  L    G ++L
Sbjct: 4   LLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGVELL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
              R        P++ ++   ++   +    +G DD + KP    E++AR  A + R   
Sbjct: 64  AWLRK--RRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRRSQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  E G + V           E   L  RE  +L  L++N+G+ +++ Q+  ++YG 
Sbjct: 122 RSTDTIEYGDLSVDPALMTATRGAERIALTSRECALLVELLSNQGRPLSRAQLQDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++E +E N +E H+S LRKKL    G D + + R +GY ++ 
Sbjct: 181 WNEEIESNAIEVHVSNLRKKL----GADLIRTIRGVGYVVEK 218


>gi|297565826|ref|YP_003684798.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296850275|gb|ADH63290.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 219

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 90/218 (41%), Gaps = 9/218 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++        +G ++   ++             D   ++   +  G     
Sbjct: 9   LLVEDDRGVREALKLGLELEGYTVLEASNGPECLRKLEEG-PDAVILDV--LMPGGDGFG 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++    ++  +     G DD + KP    E++AR+ A+ RR +  
Sbjct: 66  VLREIRRKSSVPVLMLTALDEVEWRVKGLKEGADDYLVKPYALPELVARLEAVLRRTRRE 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       + ++    +      V  L  +   +L+ L+ +  + + K  +   ++G   
Sbjct: 126 DAILSYADLTLYPAKMEARRAERVLELSPKAFSLLKCLVEHAERILPKETLMQRVWG--- 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E VE N +E H+S LR+ L        + + R  GY +
Sbjct: 183 EEVEPNTLEVHLSALRRAL---GEPPLLHTLRGHGYIL 217


>gi|260771913|ref|ZP_05880831.1| DNA-binding response regulator KdpE [Vibrio metschnikovii CIP
           69.14]
 gi|260613205|gb|EEX38406.1| DNA-binding response regulator KdpE [Vibrio metschnikovii CIP
           69.14]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+IDD A ++       G +G  +    +      + +  + ++  ++  L        
Sbjct: 5   IVVIDDEAQIRRMLRVALGSEGYEIIEAENGNIGISMVARHQPNLVVLDLGL--PDLDGQ 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ + +R+ S +P+I +S        +   D+G  D V KP    E+    RV       
Sbjct: 63  DVLKELRSWSSIPIIVLSVRNKDNEKVKALDNGAQDYVTKPFSVVELLARIRVCLRDNIK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +++    R      E+  L  +E  +L  L ++    + +TQ+   I+G
Sbjct: 123 PEQQAVLDDGSLKIDLTRRVVMFDNELVELTPKEYGVLSILASSPNCVITQTQLLREIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                 + + +   IS LR+KL ++      + ++  +GY  
Sbjct: 183 PGHSQ-DTHYLRIVISHLRQKLGDESLNPKYLRTEPGVGYRF 223


>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V GE   L   E  +L   + N+ +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNKNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYK 219


>gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
 gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVF 232


>gi|126739713|ref|ZP_01755405.1| DNA-binding response regulator ChvI [Roseobacter sp. SK209-2-6]
 gi|126719359|gb|EBA16069.1| DNA-binding response regulator ChvI [Roseobacter sp. SK209-2-6]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVAMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 122 SNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +N              E G +R+         +G+   L   E  +L+ L    G   +
Sbjct: 122 ISNDEEGGTATAETKVMERGQLRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 RDQLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRTADSDFAAIETLYGIGYRYNE 234


>gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   S      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGL--PDEDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+  
Sbjct: 62  LLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                                + G    L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL N      V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKLGN----GIVETVRGLGYRL 216


>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++     +       S   D+  ++  L   G   +
Sbjct: 3   LLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNL--PGMDGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++    ++ +S    +   ++  D+G +D + KP H +E+ AR+ +   R+ 
Sbjct: 61  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I+  +  R+   + E  PL R+E  ILEYL+ N G+ V++ ++   ++ 
Sbjct: 121 VQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     +  H+S LRKKL+ KLG+DP+ +K   GY I
Sbjct: 181 ATADSFSG-AIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 220


>gi|256762258|ref|ZP_05502838.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256683509|gb|EEU23204.1| DNA-binding response regulator [Enterococcus faecalis T3]
          Length = 242

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G      +  +       ++ E    I   L       +
Sbjct: 6   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASPEKWDMITLDLNLPSMDGM 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 66  AVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAE 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKR 167
           V+    +T      +     +                       +E  +L  L     + 
Sbjct: 126 VAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQV 185

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 186 FSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 237


>gi|226229248|ref|YP_002763354.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092439|dbj|BAH40884.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++  +++     +      +    D   ++  L        
Sbjct: 3   LLVVEDDPKLARLIARGLREESYAVDTCELGKDAIAQAAVNSYDAIVLDVML--PDINGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R    + P++ ++   ++   +   DSG DD + KP    E+LAR+ A+ RR +
Sbjct: 61  TVVQTLRTRDIRTPVLMLTSRDAVADRIVGLDSGADDYLVKPFDFGELLARLRALLRRPE 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        +          G    L  +E  +LE L  N G+ ++++ I S ++ 
Sbjct: 121 SLQAMQVRVADLEIDLQSHAVSRGGTPISLTAKEYALLELLARNVGRVLSRSDIVSHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N VE ++++LR K+        + ++R  GY +
Sbjct: 181 -DNHDPFTNAVEVYVNRLRGKIDRDGHAPLIHTRRGAGYIL 220


>gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11]
 gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R A++ +P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDKMIEFGEFRLNLGTREMFRNDEPMPLTSGEFAVLKSLVTNMREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVF 232


>gi|52141066|ref|YP_085763.1| response regulator [Bacillus cereus E33L]
 gi|51974535|gb|AAU16085.1| response regulator [Bacillus cereus E33L]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|42783577|ref|NP_980824.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739506|gb|AAS43432.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|158312167|ref|YP_001504675.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158107572|gb|ABW09769.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 243

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +          G  +      E    L  +   D+  ++           
Sbjct: 17  LLVAEDDEASRIALARSLERFGYRVLEAADGEAALRLFQTTEIDLVVLDV--AMPRMDGF 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
            +   +R  S+VP+I ++        +   + G DD V KP            R     V
Sbjct: 75  AVLSRLRQTSEVPVIMLTGRAEEVDRVVGLELGADDYVVKPYSLRELVARVRARLRRRPV 134

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A  +R    N     G + +    R+  V GE   L  RE  +L +L  +  +  ++ +
Sbjct: 135 EAPPQRTGDGNEPLIYGDVSIDLRAREVAVAGERVDLTAREYELLAFLARHPRRVFSREE 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   ++G      +   V  H+ ++R K+         V + R +GY  D
Sbjct: 195 LLEQVWGTR--FQDPATVTEHVRRVRTKVEGRPPQRRLVTTLRGMGYRFD 242


>gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                +     + + +    D+  ++  L   G   LE
Sbjct: 6   LIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWML--PGTSGLE 63

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  R  S   ++P+I ++        +   ++GVDD + KP   RE+    R      
Sbjct: 64  LTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRT 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R    +     G +R+              P+   E R+L + M +  +  ++TQ+   +
Sbjct: 124 RDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  ++ HI +LR+ L      D V + R  GY  
Sbjct: 184 WGSGVY-IEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRF 225


>gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
 gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F  +G  +    +             D+  ++       E  L
Sbjct: 4   ILIVDDEADLRKLLTDYFEINGYFVMTAKNSREAMQKVEQG-PDLVLLDIN--MPEENGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+   IR     P++ ++        +  F +G DD + KP   RE    +       +R
Sbjct: 61  EICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLRREQR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +      + +    R+   Q    PL ++E  I+E L  N G    K +++  I+
Sbjct: 121 ILTKASVRFNHDLVINYTARELYFQDIRIPLAKKEFDIIELLSMNPGMVFEKERMYEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL DE  + +V+  HI ++R K +     D +++   +GY 
Sbjct: 181 GL-DEEGDSSVIAEHIRRIRNKFKEYGSTDRIETVWGVGYK 220


>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  +         + L      D+   +  L       +
Sbjct: 3   ILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDYDLLISDIILPL--LSGI 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R I  A  ++P+I ++   +    ++ FD+G DD + KP   RE+L R+ A+  R  
Sbjct: 61  ELCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNRKN 120

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +                +  +     G+V  L  +E ++LEY++ +  + + + +I   
Sbjct: 121 GTGASISPVTKYADLEINNQTKSVTRSGKVIALTPKELKLLEYMVQHADRVLTRAEIAEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + ++  LG+  
Sbjct: 181 VWNTH-FDTGTNFIDVYINYLRKKIDKDFSDKLIHTRPGLGFIF 223


>gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
 gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +++                 D+  ++  L   G   +
Sbjct: 3   LLIVEDEEDMREALCYGLRKRGYAVDAAGDGADAVEQCGINEYDLVVLDLNL--PGLDGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + IR+      ++ +S    L   +   DSG  D + KP H  E+ AR+   + R  
Sbjct: 61  EVLKHIRSMEKPAKVLILSARSELTDKIRGLDSGASDYLTKPFHFEELEARIRMLLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + + S+ +    QG       RE  ILEYLM + G+ V+  ++   ++ 
Sbjct: 121 IQTEAALTRGGLCLDSNLKTASFQGRPLEFSMREFSILEYLMIHMGRPVSAEELLEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +     N V+ +IS +R+KL+     + + S R  GY ID 
Sbjct: 181 -SEADPFSNQVKVYISVIRRKLQAVTDEEIIRSIRGAGYLIDK 222


>gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972]
 gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972]
 gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++  P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+  +  +   L  RE  +L +   +  +  ++  +
Sbjct: 125 AMGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPSEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
 gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGL--PKMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R + + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGSVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL    G + + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKL----GVEIIQTVRGLGYLL 216


>gi|196045093|ref|ZP_03112326.1| response regulator DrrA [Bacillus cereus 03BB108]
 gi|196024095|gb|EDX62769.1| response regulator DrrA [Bacillus cereus 03BB108]
          Length = 237

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         +G   +                  D+  ++  L       
Sbjct: 9   ILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVML--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115
             L   IR  S  P++ +S     +  L     G DD + KP   RE     +       
Sbjct: 67  FSLLSSIRKISSTPVLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILKRVY 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +    +    G   V  +        +  PL  +E  IL  L  N+G+ +    +  
Sbjct: 127 SSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPLTAKEHAILVKLYENQGRIITNDALCQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A++G  D    EN +  HI ++R+K+  +      + + R LGY +
Sbjct: 187 AVWG-DDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKL 231


>gi|167766709|ref|ZP_02438762.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
 gi|167711463|gb|EDS22042.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +           +       +  I+          L
Sbjct: 11  ILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVM--MPKMDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112
                IR    +P+I +S        +     G DD ++KP    E              
Sbjct: 69  SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 128

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +  +   G + +   G+   V GE   L   E +I+  LM N G+  +  +
Sbjct: 129 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++     A  EN V  HI ++R+K+  +      +     +GY I+ 
Sbjct: 189 IYERVWNEEAYA-TENTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIEK 238


>gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +        G +  SL   +  E    L  S   D+  ++           
Sbjct: 4   ILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEHDLVVLDVM--MPRFNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
           +  R+IRA SQ+P+I ++        +   + G DD ++KP + RE++AR+ AI      
Sbjct: 62  DTLRLIRASSQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVVV 121

Query: 117 -----RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +      +    G I ++   R  E +GE   +   E  +LE L  + G  V+K 
Sbjct: 122 RDEALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSKA 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++F+   G  +   +   V+ H+S LR+KL   + G  P+ + R +GY  
Sbjct: 182 ELFTQALGRAESRYD-RSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGYQF 230


>gi|39933435|ref|NP_945711.1| two-component transcriptional regulator ChvI [Rhodopseudomonas
           palustris CGA009]
 gi|192288792|ref|YP_001989397.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|316931661|ref|YP_004106643.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|39647281|emb|CAE25802.1| two-component transcriptional regulator ChvI, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192282541|gb|ACE98921.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|315599375|gb|ADU41910.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +           +   D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTPPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E  R +R  S +P+I ++        L     G DD + KP   R             A 
Sbjct: 62  ETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSAP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +      + GP+R+  +      + E   L   E  IL+ L    G   ++ 
Sbjct: 122 KDPAAAPKENDAKALDRGPLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKAVDDEFEMIETLYGVGYRF 230


>gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24]
 gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V     A+    G  +    S E          +    +   L    +   
Sbjct: 3   LLLVEDDNHVAAALSAILARHGFDVTHARSGEEALQALVPEVDGFGVVLLDLGLPDQDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   
Sbjct: 63  EVCGKIRKRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTAH 122

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    T  +            R   V G V  L R+E  +L  L    G    + QI S
Sbjct: 123 EDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQIIS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++           +E H++ LR KL        +++ R +GY +
Sbjct: 183 EVW-RTSWEGTGRTLEVHVASLRSKL---HMPALIETVRGVGYRL 223


>gi|330447872|ref|ZP_08311520.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492063|dbj|GAA06017.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 243

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  ++     E  +   ++   D+  ++      G+    
Sbjct: 8   LVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAAGYPDLILLDIM--MPGDDGFT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE----------ILARV 112
           L + IR  S VP+I ++        +   + G DD + KP   R+           +   
Sbjct: 66  LCQHIRKSSDVPIIMLTAVSDEMDQIIGLEIGADDYIAKPFSPRQLLARIKALLRRIKPS 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             +   +         E F L   +  +L   +    + + +  
Sbjct: 126 DVQLSPSVAKFIYFANWRLDTTAHRLLDVQTNEEFELTSGDYSLLMLFVTRPNEILDRDT 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I  A  G  D    E  ++  +S+LR++L +K      + + R  GY  
Sbjct: 186 ISCATRGR-DAQPSERGIDVALSRLRQRLGDKGRTQRLIKTSRGNGYIF 233


>gi|298503375|ref|YP_003725315.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|298238970|gb|ADI70101.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
          Length = 238

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 17  ILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 75  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 134

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 135 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 195 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 233


>gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D     D  +  F + G   +  +  E    L  S   DV  ++  L    G  V
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKRDGLSV 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R     ++ P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 78  IGTLRE--KGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +  D     V      L    RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRAKIDKGFDRPLLHTIRGAGYMI 236


>gi|47566630|ref|ZP_00237452.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47556660|gb|EAL14992.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILVVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIQNAIVTKRGYGYALLTEW 229


>gi|310756717|gb|ADP20499.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N       +    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKVTNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 238

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 85/224 (37%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G+ +    +             DV  ++           E
Sbjct: 10  LVVDDEPRMINFMRLNLELEGMRVATAANGREALDRARDDMPDVILLDVM--MPVMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
             R +R  SQVP++ ++     +  +   + G DD + KP  HRE+++R           
Sbjct: 68  ALRRLRQFSQVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRRHYTA 127

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +    R+  V GE   L   E R+L +L+ N G       + + +
Sbjct: 128 PPVPQTLVQVDERLSIDFARREVLVSGERVNLRPTEYRLLYHLVQNAGYVQTHEMLLTKV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 188 WGPEYRE-ESHYLRLYITYLRQKIEQDPANPKYILTERGVGYRF 230


>gi|304440638|ref|ZP_07400522.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370825|gb|EFM24447.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 216

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             +I+D   ++          G  +  F   +  ++ ++    D+  ++  L    G+++
Sbjct: 3   IAIIEDEEDIRKLIEYALSTQGFEVSTFE--KGPDFFKTEILPDIILLDIMLPGMSGQEI 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R      +I ++   +    +   ++G DD + KP    E+++RV A  RR+ 
Sbjct: 61  LKKIRENRKFDNTLVIMLTAKSAEMDVVSCLEAGADDYIKKPFGVMELISRVKAHIRRIG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   I + +  R  +  GE   L  +E  +L+YL  N+   + +  I   I+G 
Sbjct: 121 REAEEIEVRDIMIDTKRRTVKKDGEEINLTYKEFELLKYLAENKSIVLTRENIIEKIWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   E   V+ HI+ LR+K+      D + + R +GY ++
Sbjct: 180 FDYIGETRTVDMHIASLRQKIGE----DYIATIRGVGYKME 216


>gi|260577312|ref|ZP_05845285.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259020493|gb|EEW23816.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++      GE  +
Sbjct: 8   LLVVDDDERIRGLLQKFLMRNGFLVTIARDAAQARRLLGGLEFDLVVLDVM--MPGEDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA   VP++ ++        ++  ++G DD + KP   +E+L R+ AI RR+  
Sbjct: 66  ALTRDLRARLAVPILLLTAKGETANRIEGLEAGADDYLAKPFEPKELLLRINAILRRVPQ 125

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +            G +R   +  +     E   L   E +++    A  G+ V++ ++  
Sbjct: 126 AKTAVAGPKVLHLGAVRYDLERGELWRGTEPVRLTATEAQLMRIFAAAAGEPVSRERLVG 185

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +    D    ++  V+  I++LR+K+  +      + + R  GY +
Sbjct: 186 DLGPGDDADKAQDRAVDVQITRLRRKIEADPKQPRYLQTVRGEGYML 232


>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 220


>gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
 gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           +L R +R+  Q  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R  
Sbjct: 61  DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY  
Sbjct: 180 PDDEERDPNVIEVLVGRLRRKLEGDNGFKPIDTVRGLGYLF 220


>gi|325661561|ref|ZP_08150185.1| hypothetical protein HMPREF0490_00919 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472088|gb|EGC75302.1| hypothetical protein HMPREF0490_00919 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 236

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++          DG  +    S          +  D++ ++  L       L
Sbjct: 11  ILIVEDDKVLNKTLAYNLTADGYEVTSAYSFLDAVERLKESEFDIALLDINL--PDGNGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IR       ++ I+        L  +++G  D + KP     +  +VAA++  ++
Sbjct: 69  HLCDEIRGRGQHTYIMFITANDKEGDMLKGYEAGCTDYITKPFSVMVLCKKVAAVFANME 128

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   + +       ++    +   ++G+V     +E R L   + N    + K Q+   +
Sbjct: 129 LRTPKHDVFEDEVLKIDFSEQSAVLEGKVIDFTPKEYRTLFLFVKNPHIILTKRQLIEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +  + V+E+ + + IS++RKK+        + +   +GY 
Sbjct: 189 WDIDGDFVDEHTLTTIISRIRKKIETD-ERKYIKTAYGMGYQ 229


>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++        +  + +V  ++  L        E
Sbjct: 5   LVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGL--PDMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118
           +   +R  + VP+I +S        +D  D+G DD V KP         + A V    R 
Sbjct: 63  VLAGLRGWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGART 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    T    V    +     G    L   E  +LE L+ N+GK V++  + S ++
Sbjct: 123 QGEGEPVVVTDSFAVDLVAKKVTKDGAEVHLTPTEWGMLELLVRNQGKLVSQKDLLSEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G      E + +  ++++LR+KL  +      + ++  +GY  +
Sbjct: 183 GPS-YKTETHYLRVYLAQLRRKLEADPAHPRHLITEAGMGYRFE 225


>gi|291534308|emb|CBL07420.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538051|emb|CBL11162.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++DG          ++           +  S    ++ ++          +
Sbjct: 6   ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGIEGLEIIESKEIHLAIVDIM--MPRMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H   P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 64  TMTLKLREHHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQIRRYTK 123

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN+++                     +  V G+   +   E +IL  LM N G+  +  
Sbjct: 124 FNNKSQEKKENDRVHIIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSAD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +I+  ++   ++A+  + +  H+  +R K+  N      +     +GY ++ 
Sbjct: 184 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKMEK 233


>gi|124267828|ref|YP_001021832.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260603|gb|ABM95597.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 236

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A +           G  +E   +L+           D   ++  L       L
Sbjct: 5   LLLIDDDARLTAMVGDYLRQAGYEVEVAPTLDSGRTRLERELFDALVLDLML--PDGDGL 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115
           +L R +RA  +    PL+ ++        +   + G DD + KP   RE    +  +   
Sbjct: 63  DLCRELRAAPRTRALPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALLRR 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    G + V + GR   + G+   L   +  +L+ L    G+ +++ QI  
Sbjct: 123 AAPSGGDGDVLRFGRLEVDAGGRQARLDGKPCDLTSYQFDLLQVLANAPGRVLSRDQIMD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A+ G   EA +   ++ HIS++R  + +       + + R  GY  
Sbjct: 183 ALKGHALEAFD-RSIDVHISRIRAAIEDDPKTPRRILTVRGAGYVF 227


>gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGL--PGISGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL  R+       P++ ++   + Q  ++   +G DD + KP    E+ AR+ A + R  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  I +LR+KL  + GF P+D+ R LGY  
Sbjct: 180 PGDEERDPNVIEVLIGRLRRKLEGEQGFKPIDTVRGLGYLF 220


>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++DG      ++G  +              +    +  ++          + 
Sbjct: 7   LVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEVHLIILDIM--MPNMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +     G DD V KP H  E+LARV +  RR    
Sbjct: 65  ATFKIREERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +E              + ++  ++GE   L   E +I E LM N G+  +  +I+  
Sbjct: 125 GTYSEGATKVEIDGLVLDEEAKEVVLEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++       E N+V  HI K+R+K+  +      +     +GY ++ 
Sbjct: 185 VWNEEAYNAE-NIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230


>gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       ++G S+           +  +   D+  ++           
Sbjct: 6   ILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLM--MPRLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
           E  + +R  S VP+I +S        +   + G DD + KP +  E++            
Sbjct: 64  EAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+   + G I++ +  +   V  ++  L   E +ILE+LM N  K  +   I+  
Sbjct: 124 YDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++     A+E   V  HI ++R+K+  +      +     LGY    N
Sbjct: 184 VWNEP--AIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDN 229


>gi|260778812|ref|ZP_05887704.1| probable transcriptional regulator SyrB [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604976|gb|EEX31271.1| probable transcriptional regulator SyrB [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +    + +   +G  +E  +  E           D+  ++  L       +
Sbjct: 4   ILVVDDDIELCALLVDVLSAEGYQVESVHCGESALQYIEKKPVDLVLLDVML--PKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + I      P++ ++      + LD + +G D  + KP    E+L R+ AI+RR+ +
Sbjct: 62  QVAKRICQRFATPILMLTALNDEASMLDGYQAGADQYIAKPFKVPELLTRIKAIFRRVGL 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R                      PL   E  +L YLM N G  V+K ++   +    
Sbjct: 122 EKQRQSGC-----QSSAGFAEHLSGVPLTGTESDLLNYLMRNDGVVVSKAELQIEVL-KK 175

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +  +  ++ HIS +R+KL    L    + + R  GYS 
Sbjct: 176 ELSPFDRNLDMHISNVRRKLVEAGLSKQHIKTVRGKGYSF 215


>gi|326202666|ref|ZP_08192534.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987250|gb|EGD48078.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +               +      D+   +           
Sbjct: 5   ILVVEDDETLNKLMCIKLKQENFKTFSAFDGAQALGILDQEYIDLIISDIM--MPKIDGY 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R  S   P++ ++    L+     F +G DD + KPI+ +E++ RV A+ RR K
Sbjct: 63  ELTKELRDASYAQPILMVTAKDQLEDMEQGFRAGTDDYMIKPINLKEMILRVNALLRRSK 122

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N +       V         + G+ F +P +E  +L  L++N  K   + +I   I+G
Sbjct: 123 IANEKRLIVGKTVLDYSQMTIYIGGQEFEIPPKEFYLLFLLLSNPNKIFTRLEILDEIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D  V+E  V+SHI KLR+K  N + F+ + + R LGY 
Sbjct: 183 M-DSEVDERTVDSHIKKLRRKFENCMDFEII-TIRGLGYK 220


>gi|224826849|ref|ZP_03699949.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601069|gb|EEG07252.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 242

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D   AL  D G +  G           ++ R  +  ++  L   GE  L
Sbjct: 7   ILIVDDETEVRDWLGALLEDGGFAPHGVADGAAMRQALAAQRFALVILDLRLK--GEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S VP+I +S        +   +   DD + KP   RE+LARV A  RR   
Sbjct: 65  MLARELRGQSAVPIIMMSGKGDETDRVLGLELAADDYLTKPFSGRELLARVRAALRRTTE 124

Query: 122 SNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVA 169
            +   +  P                         G    L + E  +L  L+ +  +  +
Sbjct: 125 LSIPLQRHPGEAHECYAFNGWLLDLTARELRQPDGTPCALTQGEFSLLATLVRHPQRVWS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + Q+     GL D  V +  ++  I +LR+K+       + + ++R LGY  
Sbjct: 185 REQLLEQTRGL-DTEVYDRTIDVLILRLRRKIEPNPRHPELICTERGLGYQF 235


>gi|84500299|ref|ZP_00998565.1| DNA-binding response regulator ChvI [Oceanicola batsensis HTCC2597]
 gi|84392233|gb|EAQ04501.1| DNA-binding response regulator ChvI [Oceanicola batsensis HTCC2597]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVAITLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  + +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTSMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +              E G +R+         +G    L   E  +L+ L    G   ++ 
Sbjct: 122 IGGEVVAETEETKVMERGNLRMDPLRHAVAWKGMDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R+    F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSVDPEFSAIETLYGIGYRYNE 232


>gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A +          DG S+    +      +    R D+  ++           E
Sbjct: 7   LVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERERPDIVILDLM--MPVMDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118
             + IR  S  P+I ++        +   D G DD V KP    E+ ARV          
Sbjct: 65  AMQRIRQMSNAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAVLRRAKGT 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + +  + R   V G+   L R E  +L  L +N G+ +  +++ S I+
Sbjct: 125 AAPATQVLKYDRVTIDLNNRQVTVDGKEVRLSRTEWELLYQLASNAGRVMLHSELLSRIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           G      E   + + +S+LR KL +       + +   +GY ++
Sbjct: 185 GPEFRD-ETYYLRTWVSRLRAKLEDDRENPRLITTFPGMGYRLE 227


>gi|148379883|ref|YP_001254424.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931457|ref|YP_001384180.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935275|ref|YP_001387721.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949220|ref|YP_002804311.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148289367|emb|CAL83463.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927501|gb|ABS33001.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931189|gb|ABS36688.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226840740|gb|ACO83406.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++D         + +++           +  +    V  ++          +
Sbjct: 7   LVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIM--MPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113
                IR  + +P+I +S        +   + G DD + KP +        + ++     
Sbjct: 65  RTCMKIRERNNIPIIMLSAKNEDIDKILGLNIGADDYIAKPFNPLELVARVNSQLRRYTN 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    ++      + +        V G+   L   E  IL  L  N G+    +QI
Sbjct: 125 LGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSSQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++        EN V  HI +LRKK+  +      +     +GY ID 
Sbjct: 185 YEYVWNEPSFK-TENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E + + YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLG------FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+     +            +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 238

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G ++E  +  E       S R  ++ ++  L        
Sbjct: 4   LLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTL--PRLNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++        +   + G DD + KP +HRE++AR+ AI RR   
Sbjct: 62  EVLKRIRQESSLPVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILRRTDP 121

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  A      E   + +    R+    G    L   E  +L+ L    G  V + ++  
Sbjct: 122 DSRPASGARILEIDDLSINPANREVRRGGVPVELTAAEFLLLKTLAEAPGTLVGRDELTR 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +        +   ++ H+S LR+KL  K  G   + + R  GY
Sbjct: 182 IVLHRRLTPFD-RAIDMHVSNLRRKLGEKPDGSPRIRTVRGSGY 224


>gi|324328343|gb|ADY23603.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +    +    +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVNVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +E               +  +  ++  L        
Sbjct: 5   ILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLML--PVINGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +     + +I ++    +   +   + G DD + KP   RE++AR+ ++ RR   
Sbjct: 63  DVCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLDK 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +     G + +    R   ++  +      E  +L  L++N G   ++ QI +
Sbjct: 122 TIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQILN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+ + D A     V++HI ++RKKL N    D + +   +GY 
Sbjct: 182 IIWNM-DYAGGTRTVDTHIQRIRKKLGNNY-QDLIQTVYGIGYK 223


>gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++          G  +                R  V  ++      G+  LE
Sbjct: 6   LIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEAAKALEQLRPSVVILDIM--MPGKDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119
           +   IR  S VP+I ++        +   + G DD + KP + RE    +      +   
Sbjct: 64  VLADIRRASTVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRRHAPE 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R ++G I +        +    + L   E  +L  LM N    +++  + +  +G
Sbjct: 124 APNKGRLKSGGISLDLSLETLTIGTTRYELSTVEFNVLSALMRNPDIPLSRDALLNLGWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D  V +  V+ HISKLR  L+   G    + +    GY  
Sbjct: 184 E-DAVVSDRSVDVHISKLRSILKQHHGHEKRIKTVWGFGYKF 224


>gi|205372857|ref|ZP_03225666.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++        + G      ++ E           D+  ++      G+   
Sbjct: 4   LLIIDDEEDMQHLIGLYIQNGGYETVFASNSESALEQMRRHEIDLVLLDIM--MPGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   I +   VP+I +S        +     G DD + KP    E+LAR+ A+ RR K 
Sbjct: 62  QVCEEICSEYDVPVIFLSAKGEEWDKVKGLKLGADDYIVKPFSPGELLARIEAVLRRWKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK----RVAKTQIFSAI 177
           S   +     +          +  V             L+    +       + Q+   +
Sbjct: 122 SLPVSSELVKKGLLTVDLLSRKVVVNGKTVNLTLKEYELLLLLIQNDQLVFTREQLLDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  +       V++HI  LR K+   +  + + +   +GY  + 
Sbjct: 182 WG-GEYIGGTRTVDTHIKTLRMKMGKPVD-EYIQTVWGVGYRFEV 224


>gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 9]
          Length = 241

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223


>gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D             + G  +      E           DV  ++  +    G  V
Sbjct: 3   ILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGVTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           +E  R      Q P++ +S    +   +    +G DD + KP    E++ARV   +  R 
Sbjct: 63  VETLRR--EGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R    QG+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222


>gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     + F      +                R +   I   +   G   L
Sbjct: 5   ILIVDDDTELLKMLRSYFEIKKYEVITACCGAEA---FDRIRPEPDIILLDINMPGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           ++ R IR     P+I ++     Q  ++   SG DD + KP   +E    +        R
Sbjct: 62  DVCRQIRDKVMCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAHLKREER 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    +   +      L + E  I+E+L +N G+   K +I+  +Y
Sbjct: 122 HRGQTEYRFLNGLCINYSAKTVTIGENEIELTKAEYDIIEFLSSNAGQVFDKERIYEKVY 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D       +   + ++R K       + +++   +GY 
Sbjct: 182 G-YDAEGGSRGITELVRRIRNKFSAYTETEYIETVWGMGYR 221


>gi|299768936|ref|YP_003730962.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699024|gb|ADI89589.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDIILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAVTPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRTGV 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A    +          +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLANHEQLLQNGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSEVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +             +   DV  ++  L       +
Sbjct: 4   ILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ +
Sbjct: 62  EVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  ++     V           R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDGNSKEHQTTVNYKDLTIEKENRIVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|160894215|ref|ZP_02074993.1| hypothetical protein CLOL250_01769 [Clostridium sp. L2-50]
 gi|156864248|gb|EDO57679.1| hypothetical protein CLOL250_01769 [Clostridium sp. L2-50]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV   +  L       L
Sbjct: 4   ILVVEDDENLNRGIAFSLKKSGYEVFSAESVKKAKRIASDNNVDVIICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  K ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKNREISLTKTELKMLTFFLQNPKKILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           L  + V+EN +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAASVYIKNIRGLGYIWN 224


>gi|134293532|ref|YP_001117268.1| two component heavy metal response transcriptional regulator
           [Burkholderia vietnamiensis G4]
 gi|134136689|gb|ABO57803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia vietnamiensis G4]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   +   ++G  ++     E   W       DV  ++  L         
Sbjct: 4   LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   Q P+I ++    +   +     G DD + KP    E++ R+ A+ RR +V 
Sbjct: 62  VLRALRGQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    RV   GR     G    L  +E ++L  L    G  ++KT I   ++ + 
Sbjct: 122 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGDVLSKTTIAELVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     NVVE+ I +LR KL        + + R +GY ++
Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFTDKLLHTIRGMGYVLE 220


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++    +        ++E     +       +   D+   +  L       +
Sbjct: 3   ILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVL--PKLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R++    P++ I+        +   D+G DD + KP++ RE+ ARV A+ RR  
Sbjct: 61  TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                                        L  +E  +LE L+ N  +  ++  I   ++ 
Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD+  +E  V+SHI  LR KL+     D +++   LGY +
Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRL 220



 Score = 61.6 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +++DD  L+      +    G+ + G +       +  S   D+  ++  +    G ++ 
Sbjct: 503 LVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIELC 562

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           +  R      ++P++ ++ +  ++T    F +G DD V KP
Sbjct: 563 QAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKP 603


>gi|326319281|ref|YP_004236953.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376117|gb|ADX48386.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+        E      +    D+  ++  L   G   L
Sbjct: 12  ILVVDDDPEIRELLCDYLRAAGLRPAAVADGEAMWQWLARHTADLVVLDLML--PGTDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  + +P++ ++   +L   +   + G DD + KP   RE+LAR+  + RR + 
Sbjct: 70  ALCRALRECTHIPVVMLTARGALLDRILGLEMGADDYLPKPFDPRELLARINVVLRRARQ 129

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKT 171
                    +              E   +            + R+++ L  N  + +++ 
Sbjct: 130 VPAHLHEPEMAATLRFAGWCLDARERQLVSPAGVVVALAQSDFRVMQALAQNPRRTLSRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +    +G    A++   V+  +S+LR+ L +       + + R  GY +
Sbjct: 190 YLAEHAFGKERSALD-RAVDVCVSRLRQHLEDDPRQARLIRTVRNAGYQL 238


>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
 gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +   N  +    L       +  ++   I      L
Sbjct: 4   ILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDI--IMPKMNGL 61

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +L +  R       P+I ++   +    ++  D+G DD + KP   +E+ AR+ A     
Sbjct: 62  QLCKQYRQTYGYQSPVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLRRT 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +      G + +            V  L  +E R+LEYL+ NRG   ++  +   +
Sbjct: 122 GAEPAVPLLSCGDLTLDPSSHRAIRGKVVIDLTVKEYRLLEYLIRNRGTAQSRLTLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-NFDTNTNVVDVYVNYLRSKIDKDFDRKLIRTVVGVGYMME 224


>gi|15843385|ref|NP_338422.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148824970|ref|YP_001289724.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253800812|ref|YP_003033813.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233257|ref|ZP_04926583.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
 gi|289747605|ref|ZP_06506983.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|13883750|gb|AAK48236.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|124603050|gb|EAY61325.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
 gi|148723497|gb|ABR08122.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253322315|gb|ACT26918.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 1435]
 gi|289688133|gb|EFD55621.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|328460539|gb|AEB05962.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 4207]
          Length = 286

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G ++                R DV  ++  L    G  VL
Sbjct: 64  LVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDVL 123

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    +  +P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 124 HKLRS--ENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 181

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 182 TTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRV 241

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 242 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 282


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A        +    S      +    + D+  ++  L        
Sbjct: 28  IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVML--PDIDGF 85

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    R
Sbjct: 86  TVTRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 145

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 146 EQTEEDPIIRVGDLEINEDSHDVTRSGQTIDLSPTEYKLLRYLMDNAGRVLSKAQILDHV 205

Query: 178 YGLFDEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  +++KR +GY I
Sbjct: 206 W-QYDWGGDAAIVESYISYLRKKVDGIEVTDENGDKHKVTPLIETKRGIGYMI 257


>gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Kim 5]
          Length = 218

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 9/217 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     +             D+  ++          L
Sbjct: 5   ILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGNIDLIILDIG--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I +   GR       V  +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAAPDRRHAALVAGEISLDRHGRTVMFGDSVLGMTALEFAILEALLSRPGMVFSREQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           A YG     V +  ++SHI  +R K     G   + +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFTAVGGAGIIAT 218


>gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +        ++   +         +   S  R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I ++        +   + G DD + KP + RE+LAR+ ++ RR  +
Sbjct: 66  SLCRRVRASSPLPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRRQSL 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172
           +   + T      +                      +   E  +L+      G+ +++  
Sbjct: 126 AQTASATSGATALTFLGWRIDFRLRELRNPDGALVAMTSAEFDLLQAFCERPGRVLSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +    +G  +    E  ++  +S++R+K+  +      + + R  GY  
Sbjct: 186 LLDLTHGR-NAGSFERSIDVLVSRIRRKIEPDPQSVSIIKTVRSGGYMF 233


>gi|70725698|ref|YP_252612.1| hypothetical protein SH0697 [Staphylococcus haemolyticus JCSC1435]
 gi|123660954|sp|Q4L8L9|HSSR_STAHJ RecName: Full=Heme response regulator hssR
 gi|68446422|dbj|BAE04006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 88/218 (40%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +            +      S E      ++ + D++ ++  +   G    E
Sbjct: 5   LIVDDDYKILHYVSQHLEAAQIQTVTQASGESAIAYLANNKVDIAVVDIMMT--GMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR +++
Sbjct: 63  LCQLLKNDYDLPVIMLTARDALSDKERAFVSGTDDYVTKPFEVKELLFRIQAVLRRYQIN 122

Query: 123 NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +                   V  +   LP +E ++L  L         +  +   I+G F
Sbjct: 123 SQDIIKLGNVTLIQEYMELSVDSKNVNLPTKEFQLLFLLCGQPKHIFTRDTLIERIWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D   +E  ++ HI +LR +L        + + R  GY 
Sbjct: 182 DYEGDERTIDVHIKRLRHRLNQLKATIEIQTVRGQGYR 219


>gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
 gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +           G  +      E    L      D+  ++           
Sbjct: 4   ILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALARQE-PDLILLDIM--MPDMNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E+ R IR     P++ +S   +    +     G DD ++KP             +     
Sbjct: 61  EVCRAIRDQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +     +    R     + +        +     PL RRE  I+E L    G+  ++  I
Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  ++G  D   +   V  HI K+RKK        + + +   +GY  +
Sbjct: 181 YERVWGC-DAEGDAYTVVEHIRKIRKKFAQVSSEKEYISTVWGIGYRWE 228


>gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
 gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 93/219 (42%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  +++         G  +   +  E       +   D+  ++  L         
Sbjct: 5   LVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYFDIILLDIML--PKLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   I     +P+I ++    +   +     G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  IISKI-KGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCGKI 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +   + +F + R  + +GE+  +  +E  +L   + N+   +++ QI   ++G +D
Sbjct: 122 EEVIKLKHLDIFPEQRLIKSKGEIIDITLKEYELLMLFIKNKNIALSREQILERVWG-YD 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E   V+ H+ ++R+KL      D + +   +GY ++
Sbjct: 181 YFGETRTVDIHVLRIREKL---NLKDCIKTVYKVGYRLE 216


>gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         S   D+  ++      G +  
Sbjct: 3   LLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVM--MPGLEGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ R++RA    VP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMD 222


>gi|54302379|ref|YP_132372.1| putative transcriptional regulator CpxR [Photobacterium profundum
           SS9]
 gi|46915801|emb|CAG22572.1| putative transcriptional regulator CpxR [Photobacterium profundum
           SS9]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++ +    +  ++G  +   +  E       +   D+  ++  L       L
Sbjct: 4   ILVVDDDVMLCELLTEVLSEEGYDVHYIHDGESALTYMQAHSVDLVLLDVML--PNIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I      P++ ++      + LD   +G D  V KP    E+LAR+ +I RR+ +
Sbjct: 62  QVARRICQRFATPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRRVGL 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R                +Q    PL   E  +LEYL+ + G  V+K ++   +    
Sbjct: 122 ERQRQGLNNCTAD-----LSIQFSRLPLTGTESELLEYLIKHDGIVVSKAELQKEVL-KK 175

Query: 182 DEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220
           D    +  ++ HIS +R+K L++ L    + + R  GYS 
Sbjct: 176 DLCPFDRNLDMHISNIRRKMLQSGLSKQHIKTVRGKGYSF 215


>gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 238

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +E                 D+  ++  L       +
Sbjct: 6   ILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQLPDLVILDLGL--PDIDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
           ++ R IR  SQ P+I +S        ++  D G DD V KP         I   +     
Sbjct: 64  DVLRRIRETSQTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALRRTQD 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    ET    +    R   V GEV  L   E  +LE L  + G  V +  +   +
Sbjct: 124 ESTPPLAAFETQHFVLDFTERRAVVAGEVVRLTPTEWSLLEVLARHTGHLVPQKDLLREV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      E N +  + ++LR+KL  +      + ++   GY +
Sbjct: 184 WGPH-YGRESNYLRVYANQLRRKLEPDPSEPRYLLTEPGQGYRL 226


>gi|153947115|ref|YP_001401057.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958610|gb|ABS46071.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|317473596|ref|ZP_07932885.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316898886|gb|EFV20911.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G    G         +      D+  ++  L  K     
Sbjct: 4   ILIIEDDKEILKILSDFLSGYGFEAVGKTDGRCICQIIRHQNIDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR+ S +P+I IS   + Q  +D    G DD + KP    E LAR+ +  RR K+
Sbjct: 62  QLLKEIRSCSDLPVIVISARGTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    +     +      ++G    L  +E RILE LM    K  +K  +F +I+
Sbjct: 122 QTFPKKVLKFQELTLDTGSLTAYLKGVELSLTAKEFRILELLMRYPDKIFSKANLFQSIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G  +   E+N +  HIS LR KL+      + +D+   +GY +
Sbjct: 182 G-SEYLSEDNTLNVHISHLRNKLKAVSSENEYIDTVWGIGYRL 223


>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +             D+  ++  +   G   +
Sbjct: 5   ILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMI--PGINGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IR H   VP+I ++   S+   ++  D G +D V KP    E+LARV A  R   
Sbjct: 63  ELLRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGA 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   +            +    R+         L  RE  +L +L+ ++ + +++ Q+
Sbjct: 123 TKDMALQVADQWLSAGDLRLHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G+ D   + NVV+ +I  +R K+       + + + R +GY +
Sbjct: 183 LENVWGI-DYIGDTNVVDVYIRYVRNKIDPTRQLPELIHTVRGIGYVL 229


>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   ++                  + +      SS   D+  ++  L       
Sbjct: 5   LILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGL--PDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           +E+ R IRA S +P+I IS        ++  D+G DD + KP          R    R+A
Sbjct: 63  VEIIRKIRAWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  R +V  +    G +++        +      L   E ++L  L  N GK +  T I
Sbjct: 123 MMQNRSQVEESVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             AI+G      +   +   ++ LRKK+         + +   +GY +
Sbjct: 183 TQAIWGSS-WENDIASLRVFMATLRKKIESAPDSPQYIQTHIGVGYRM 229


>gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                +     + + +    D+  ++  L   G   LE
Sbjct: 6   LIVDDEVAIRDMVAYALRKGEFESLQASDAREAQAVIADCVPDLILLDWML--PGTSGLE 63

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117
           L R  R  S   ++P+I ++        +   ++GVDD + KP   RE+    R      
Sbjct: 64  LTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRT 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R    +     G +R+              P+   E R+L + M +  +  ++TQ+   +
Sbjct: 124 RDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  ++ HI +LR+ L      D V + R  GY  
Sbjct: 184 WGSGVY-IEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRF 225


>gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  +
Sbjct: 3   ILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGL--PGEDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++      P +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+N+   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQNEYPGDVITTVRGQGYRFDV 222


>gi|24215807|ref|NP_713288.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45656882|ref|YP_000968.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196997|gb|AAN50306.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600118|gb|AAS69605.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++             +    +++      +    D+  ++  L       +
Sbjct: 5   ILVADDDDRIRKMIRISLNASHYEVIESATIQETILKAAKNSPDLILLD--LQFPDGNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
              R IR+ S+ P+I +S   S    +   D G DD + KP    E+    RVA   +  
Sbjct: 63  TALREIRSWSETPVIVLSVLASDPEKISLLDGGADDYITKPFSMGELLARIRVALRNKTQ 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +    +G + V    R+ +V G    L   E   L +L+ + GK + + QI   ++G
Sbjct: 123 DPGSPIFISGNLYVDLSNRNVKVSGITVHLTPTEYIFLTFLIQHAGKVLTQEQIIRHVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            F +  E   +  H++ LRKK+  +    + + ++  +GY +
Sbjct: 183 PFAKN-ESGSLRVHVASLRKKIELDPSSPELLLTEPGVGYRL 223


>gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V++   A     G  +    +        ++   D+  ++  L        
Sbjct: 5   LLVVDDEATVRELLSAALRFAGFRVTSAATAREAVAAATAEPPDLVLLDVML--PDMDGF 62

Query: 62  ELPRIIRAHS-----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI- 115
           E+ R +R         VP++ ++        +     G DD V KP    E++AR+ AI 
Sbjct: 63  EVVRRLRERHPGHGAPVPVLFLTARDRQSDKVTGLSLGADDYVTKPFDLAELIARIRAIL 122

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R           GP+ + ++G      G+   L   E R+L YLM N G+ V+K QI  
Sbjct: 123 RRTAGRPAGVLTAGPLALDAEGHQVTRAGQAIRLSATEFRLLRYLMENAGRVVSKGQILD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   D   +  +V+++IS LR+K+ +      + +   +GY +
Sbjct: 183 RVW-RDDFGGDAGIVDTYISYLRRKV-DTAEPKLIHTVHGVGYVL 225


>gi|205372140|ref|ZP_03224955.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 267

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +    G + +   S         S R D+  I+  L   G    
Sbjct: 44  ILIIEDDEDINRLICNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLML--PGLSGE 101

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +I+   S VP+I IS     Q+ +    +G DD + KP    E+ AR+ +  RR + 
Sbjct: 102 DILKIVTKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYRD 161

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + + T  +         D +   V G V  L  RE  IL  LM++  K   K  +F +
Sbjct: 162 IPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFES 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++       ++N +  H+S +R KL +       +++   +GY +
Sbjct: 222 VWNEP-FYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKL 265


>gi|197284770|ref|YP_002150642.1| DNA-binding transcriptional regulator PhoP [Proteus mirabilis
           HI4320]
 gi|227357776|ref|ZP_03842125.1| two-component response regulator [Proteus mirabilis ATCC 29906]
 gi|194682257|emb|CAR41989.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227162105|gb|EEI47119.1| two-component response regulator [Proteus mirabilis ATCC 29906]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   + +  DV+ ++  L    E  +
Sbjct: 3   ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGL--PDEDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+ARV A + R +
Sbjct: 61  SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D + + R  GY  D
Sbjct: 180 PDAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 221


>gi|168493531|ref|ZP_02717674.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|194398437|ref|YP_002038249.1| response regulator [Streptococcus pneumoniae G54]
 gi|221232376|ref|YP_002511529.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|183576296|gb|EDT96824.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|194358104|gb|ACF56552.1| response regulator TCS01 [Streptococcus pneumoniae G54]
 gi|220674837|emb|CAR69411.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLIEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRML--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E    RV               G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|311696838|gb|ADP99711.1| two-component response regulator [marine bacterium HP15]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G+     +  +           D+  ++  L   G   L 
Sbjct: 6   LIIEDNPGIGELVRMQVSDLGMKPVLVDRGDTGLERFREGGVDLVILDLML--PGLDGLA 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R IRA    VP++ ++   +    +   + G DD + KP    E+ AR+ A++RR+  
Sbjct: 64  VCREIRACPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELAARIKALFRRVDA 123

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E   +R+    R   V      L  RE  +L +  ++RG+  ++ Q
Sbjct: 124 LSQAAPAGDQADEIEVDGLRIDPVRRRVFVDDREVDLTAREFDLLWHFASHRGRVFSRAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +++G ++    E+ V +HI++LR K+  +      V +   +GY  
Sbjct: 184 LLDSVWG-YNHEGYEHTVNTHINRLRNKIEADPADPRYVQTVWGVGYRF 231


>gi|291530073|emb|CBK95658.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A +++   ++   DG  ++    ++     +      D++ ++  L       
Sbjct: 11  ILIVDDEADLREMVTSILAQDGFKTIRTAGTVAEALKICRDWEPDLAILDVML--PDGDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
             L   +R  ++VP++ ++     +  L     G DD + KP   +E+       + R  
Sbjct: 69  FSLFEQMRTFTEVPVLFLTARGEDEDKLKGLGLGADDYMVKPFLPKELSLRIGIILRRYY 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +   +    ++  D  +   + E FPL  +E  IL  L  N G+ V   Q+  A +G
Sbjct: 129 KGEDPIVQLAGSQIDFDRAEVIKENEHFPLTAKEHDILLALYRNAGRIVTIDQLCEAAWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    EN + +HI ++R+K+  N      + + + LGY +
Sbjct: 189 -DNPYGYENSLMAHIRRIREKIEANPSKPVSLITVKGLGYKL 229


>gi|292488012|ref|YP_003530889.1| response regulator phoP [Erwinia amylovora CFBP1430]
 gi|292899230|ref|YP_003538599.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199078|emb|CBJ46189.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291553436|emb|CBA20481.1| Response regulator phoP [Erwinia amylovora CFBP1430]
 gi|312172136|emb|CBX80393.1| Response regulator phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LVVEDNPLLRHHLAVQLREMGHQVDAAEDAKEADYFLNEHTPDITLVDLGL--PDEDGMA 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A + R   
Sbjct: 62  LIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEHAQEVITTVRGQGYRFD 221


>gi|297569293|ref|YP_003690637.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925208|gb|ADH86018.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   +     A     G  L    SL     +  S + D+  ++  L       L
Sbjct: 10  LLAIDDDQDILKVLKANLELHGFKLVTATSLTEARQVLESLQPDLIILDLML--PDGDGL 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           E    +++ H Q+P+I ++    +   +   + G DD V KP    E+    +       
Sbjct: 68  EFCCSLKSIHPQLPIIMLTARDKVSDKVVGLELGADDYVVKPFETSELLARIKARLRSSP 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N     G + V    +   V G+   L  +E ++L  L+ NR   V + +I   ++
Sbjct: 128 GGAPNPVIRAGELEVDLRNQTVSVNGQEIYLTAKEFQLLACLVENRNNLVTRDEIRKRLW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                     V++ HI  LR+K+         + +    GY  
Sbjct: 188 RDSKIYSWSRVIDVHIQHLRQKIEKTPSRPRFIITVPGRGYRF 230


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +       +  ++          +
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVM--MPRLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 66  RATLKIREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 125

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N           G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 126 LGNAAESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 186 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L    +  +
Sbjct: 3   LLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGL--PKKDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            +    R + + +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 61  SVLEAWRRNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae
           F3031]
 gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3031]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTL--PKLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R++ Q  P++ ++   +L   +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +   
Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-SS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 WDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 215


>gi|297156303|gb|ADI06015.1| putative two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +              +   D   ++  L       L 
Sbjct: 21  LVVDDEPDLTEVLSGALRYEGWEVRTAADGASALATARAFGPDAVVLDWMLPDS--DGLT 78

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  + V ++ ++   +++  +    +G DD V KP    E+LAR+  + RR  +
Sbjct: 79  VLRGLRAELAGVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVLARLRGLLRRAGM 138

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +         R       +    R+    G V  L R E  +L +LM N  + ++K QI 
Sbjct: 139 ARGSDLHQADRLVVGDLVMDEQAREVTRGGVVIELSRTEFELLRFLMRNPRRVLSKAQIL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D     +VVE +IS LRKK+ +      + + R +GY +
Sbjct: 199 DRVWS-YDFGGRAHVVELYISYLRKKI-DAGRTPLIHTVRGVGYVL 242


>gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 241

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 79/229 (34%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  +      E  +   ++   D+  ++      G+    
Sbjct: 8   LVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGEPDLILLDVM--MPGDDGFT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------ARV 112
           L + IR  S VP+I ++        +   + G DD + KP   R+++             
Sbjct: 66  LCQHIRKTSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRRVKPT 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                       R     +   +       +G    L   +  +L   ++   + + +  
Sbjct: 126 ETQQAPATPKFIRFANWRLDTSTHILYNLEKGHEHELTGGDYALLMLFLSRPNEILDRDT 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I  A  G  +    E  V+  +S+LR++L +K      + + R  GY  
Sbjct: 186 ISYATRGR-EVQASERGVDVALSRLRQRLGDKGRTQRLIKTSRGNGYIF 233


>gi|221124418|ref|XP_002164240.1| PREDICTED: similar to ompR homolog [Hydra magnipapillata]
 gi|260220990|emb|CBA29107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 242

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         +  +    +   D+  ++  L   GE  L 
Sbjct: 5   LVVEDESAIAELIAVNLRHNGFRPRWAMDSDSAQREIDAGVPDLILLDWML--PGESGLT 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +  R+  +    P+I ++        +   D+G DD + KP   +E+LARV A+ RR 
Sbjct: 63  LAKRWRSDPRTKEVPIIMLTARGDEADRVAGLDAGADDYIAKPFSTKELLARVRAVLRRR 122

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +         + +         +     L   E ++L YLM +  +  ++ Q+   +
Sbjct: 123 TPESTGEALTIAGLTLDPATHRVSFEETALKLGPTEFKLLHYLMGHAERVHSRAQLLDNV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L +      V++ R  GY +
Sbjct: 183 WGDHVY-IEERTVDVHVKRLREALAHAGS--MVETVRGAGYRL 222


>gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 9/218 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     S             D+  ++          L
Sbjct: 5   ILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIG--MPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          I +   GR          +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAASGRRHAALVAGEISLDRHGRTVMFGDSALAMTALEFAILEALLSRPGMVFSREQLMQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + YG     V +  ++SHI  +R K     G   + + 
Sbjct: 183 SAYGAGTY-VADRTIDSHIRNIRAKFTAVGGTGIIATV 219


>gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ D        +G      ++         + + DV  ++  L        
Sbjct: 5   ILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLML--PDTDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           EL + + + +   L+ ++   + +  +   + G DD + KP + RE    +  +    ++
Sbjct: 63  ELCK-LFSSTDSMLLILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRRRKK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +S      G + + +      ++G +  L  +E  IL+ L++ RGK V++ +I S IY
Sbjct: 122 LSLSGETLRVGELEIHTGEMKVLLKGRLVDLTPKEFLILKKLLSKRGKVVSREEIVSEIY 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
              D    E +V+++I ++R KL    +   + + + R  GY  +
Sbjct: 182 S-GDIPYYERIVDTYIYRIRTKLMEIERSYAERIKTVRGFGYRFE 225


>gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +  +  F + G ++E          L +S + D+  ++  L       L
Sbjct: 3   ILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     +  +    +V  +   +    +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato Max13]
 gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato K40]
 gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +    D  +   +G +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRTLQVADLVYDLDTLEVTREGRMLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +    G   + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFGKPLLQTVHGVGYRL 220


>gi|94986440|ref|YP_605804.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556721|gb|ABF46635.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          D   +    +L+  +    +    +  ++  L       L
Sbjct: 5   ILVVEDDPHLGPLLKEYLSAD-YQVHHAATLKDAQAWLGTHSPQLILLDLNL--PDGDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R +S  P++ +S    +Q  +   ++G DD + KP    E+         R   
Sbjct: 62  DLVQALRQYSSTPVLVLSARSGVQERVAGLNAGADDYLTKPFAMPELD-ARITALLRRTA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      G   + +      V  +   L   E RILE +M    +  ++  I S +YG  
Sbjct: 121 AGTGVNLGNTSLSTSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    N VE  IS+LRKKL        + + R +GY +
Sbjct: 180 -ETPNSNSVEVRISQLRKKLEQAQSDLRIRTIRNVGYVL 217


>gi|330897949|gb|EGH29368.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330982029|gb|EGH80132.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG ++    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + RE++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +       +                +    V  L   E +IL  L+    K   + ++
Sbjct: 124 NGSNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVDNVLVTVRSVGYRF 228


>gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 266

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +          +   +  F+S +       + R D   ++      G   L
Sbjct: 34  IVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIM--MPGIDGL 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            L   +R  +++P+I IS        +   + G  D + KP + RE++ RV A+      
Sbjct: 92  SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRLSKA 151

Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  R+   S +    G + +F+D R   V G+   L  RE  +L +L  +  +   
Sbjct: 152 GMSASDDRQAAESADICHAGNLCIFADFRKVTVDGQELNLTSREFDLLLFLANHLERPFG 211

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +   ++  +D   +  VV+  + ++RKKL        +++    GY 
Sbjct: 212 REHLIQQVWS-YDFIGDVRVVDDLVKRIRKKLAEYHSTLVINTVWGFGYK 260


>gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++  Y ++    G S+    + E       + R ++   +           
Sbjct: 4   ILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIM--MPKMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+     P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 62  DLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +          D            LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSSLMIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEQTEDFQ-IMTVRGLGYK 219


>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++           
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIENRNFKFVLLDIM--MPKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
 gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVML--PKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
           E+ + +RA+     ++ ++   +++  +   D G DD + KP    E +    A I R+ 
Sbjct: 61  EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGYVL 220


>gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
 gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D +++ +G       DG +++                 D+  ++  L  +    L+
Sbjct: 118 LLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQR--DGLD 175

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 176 VLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALVRRQAG 235

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       +    R+  ++G    L  RE  +LE L+A  G  ++K+Q+   IYG 
Sbjct: 236 RAETVIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVLSKSQLEEKIYG- 294

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +  N VE +I  LRKKL    G + + + R LGY +
Sbjct: 295 WGEEIGSNTVEVYIHSLRKKL----GAELIRTVRGLGYMM 330


>gi|299537808|ref|ZP_07051097.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726787|gb|EFI67373.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       +   S+   +SL     L  + + D+  ++  L        
Sbjct: 6   ILIVEDDLDIMEVLSLTLANANYSILKASSLSSGWHLAVTQQPDLILLDVNL--PDGTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S V +I ++    ++  L+ F+ G DD + KP   +E+LAR+ A  +R   
Sbjct: 64  ELAKSIRDVSDVIIIFVTVNHLIEQKLEGFEVGADDYMTKPFIPKELLARIQAHLKRRNP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S          +     +  V  +   L    +E+ +L +L+ +  + ++  Q+   ++G
Sbjct: 124 SKKSNIVHIDNLSIHLDEKNVYKDGQLLNLFTKEKLLLFFLIEHANQVISVDQLIDHVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +D   +   V  HIS LR+K+ +       + + R  GY  
Sbjct: 184 -YDGVPDLKTVSVHISTLRRKIEDIPSKPKWIQTVRGFGYQF 224


>gi|296533817|ref|ZP_06896354.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296265853|gb|EFH11941.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +   E       +   D++ ++          +
Sbjct: 5   IALVDDDRNILTSVSMTLEQEGFQVRTYTDGESALQGLLARPVDLAVLDI--KMPRMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL + +R  S +P+I ++        L     G DD + KP   R ++ R+ A+ RR + 
Sbjct: 63  ELLQRLRQRSSMPVIFLTSKDEELDQLMGLRLGADDYITKPFSQRLLIERIRALLRRNEA 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G + +         +G+   L   E  +++ L    G    + Q
Sbjct: 123 SRAEGSGAPPSGVIIRGELVLDETKHTCSWKGQAVQLTVTEFLLVKALAQRPGMVKNRDQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  A YG     V++  ++SH+ ++RKK R     F  +++   +GY 
Sbjct: 183 LIDAAYGEAIY-VDDRTIDSHVKRVRKKFRAVDDDFSMIETLYGIGYR 229


>gi|260221867|emb|CBA30858.1| Transcriptional regulatory protein ompR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 248

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD    ++            +   +            ++++S +   ++       
Sbjct: 14  LLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTDGF 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R +R+ S VP+I ++        +   + G DD + KP + RE+LAR+ AI+RR++ 
Sbjct: 74  TLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRRMQL 133

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G      +    + QG+   L   +  +L +   + G+ + + ++  
Sbjct: 134 GAPGAPVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETLDRARLME 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              G  D    +  ++  +S+LR++L +       + + R  GY  
Sbjct: 194 QTRGR-DLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVF 238


>gi|253578578|ref|ZP_04855850.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|257413775|ref|ZP_04744208.2| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|251850896|gb|EES78854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|257202423|gb|EEV00708.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
          Length = 235

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G  +    + +       +   D+  ++           
Sbjct: 16  ILIVDDERDIVSMLNQYFCKIGYVVYTAINGKEALNAI-TKHPDIILLDIN--MPDMNGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---VAAIYRR 118
            +   IR     P+I ++        +  F  G DD V KP    E+ AR        +R
Sbjct: 73  TICEKIRNFVSCPIIFLTARIEDCDKIKGFAVGGDDYVVKPFSVDELEARVAAHLRREKR 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        I +    R    +       ++E  I+E+L  N+G    +  I+  ++
Sbjct: 133 HGSSAIVQFDNNIVIDYSSRVVFYRNAEINFTKKEFDIIEFLSQNKGIIFDRETIYEKVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL D + + +V+  HI ++R K  +      +++    GY 
Sbjct: 193 GL-DGSGDNSVITEHIRRIRTKFLSIGDNPYIETVWGCGYK 232


>gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGL--PDEDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R      P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+  
Sbjct: 62  LLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL N      V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKLGNS----IVETVRGLGYRL 216


>gi|50954148|ref|YP_061436.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950630|gb|AAT88331.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 271

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +   ++  ++ +         R DV  ++  L       L+
Sbjct: 48  LVVDDEHTLTDLLAMALHYEDWEVKTASNGQQALQFSREFRPDVVVLDIML--PDIDGLQ 105

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA     P++ ++   +L   +    +G DD V KP    E++AR+  + RR + 
Sbjct: 106 VLSRMRADGNEAPVLFLTAKDALDDRIAGLTAGGDDYVTKPFSLEELVARLRGLLRRSRA 165

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +   + V       D  +    GE   L   E  +L +LM N  + ++K QI   
Sbjct: 166 AVADQDDPVLVVGDLVLDEDSYEVHRDGEPIQLTATEFELLRFLMRNPRRVLSKAQILDR 225

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++  +D     +VVE +IS LRKK+ +      + + R  GY 
Sbjct: 226 VWS-YDFGGSSSVVELYISYLRKKI-DAGRTPMIHTVRGAGYM 266


>gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 82/224 (36%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L      D+  ++  L   G    
Sbjct: 3   ILVVEDEPKTGEYLRQGLTEAGYVSDLVPNGADGLHLALQGEYDLVILDVML--PGLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118
           ++ + +R    ++P++ ++    ++  +   + G DD               R+      
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILRRGH 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 AGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRVKIDEGHAVKLIQTVRGMGYVLDV 223


>gi|320323655|gb|EFW79739.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|330988195|gb|EGH86298.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG S+    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFSVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + +E++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPKEVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +       +      +         +    +  L   E +IL  L+    K   + ++
Sbjct: 124 NASNDRHLRYQNLLVDLNAVTAIIEGHDGTDTLLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVDNVLVTVRSVGYRF 228


>gi|238917445|ref|YP_002930962.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872805|gb|ACR72515.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   ++     ++     L + E ++L + + N  + +++TQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAEEMKVLIKSREISLTKTELKMLTFFLQNPKQILSRTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           L  + V+EN +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYIWN 224


>gi|170749494|ref|YP_001755754.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656016|gb|ACB25071.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 236

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +            +  D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALETEGYRIQTYTDGASALDGLRHSPPDLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD ++KP   R ++ RV A+ RR   
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAVLRRFAK 121

Query: 122 SNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                                   +  +      +GE   L   E  IL+ L    G   
Sbjct: 122 EAPGGTPRGEAEVAARSLERGALMMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVK 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 SRNALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVTDQSFDMIETLYGVGYRF 233


>gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 243

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        +   SL+  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGL--PKLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R      P++ ++   S Q  +   D+G DD + KP H  E+LAR+ A I R  
Sbjct: 61  SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP  V     + +    +  L   E ++ E+LM + G+  +K+ +   IY 
Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  ++ NV+E  I +LRKKL     +  +++ R  GY ++
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLN 221


>gi|92118604|ref|YP_578333.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801498|gb|ABE63873.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 242

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S +           D+  ++      GE   
Sbjct: 23  LLLVDDDRRIRDLLSRFLVGEGYRVTTAMSAKAARSKLLGLYFDLLILDIM--MPGETGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IRA S VP+I ++     ++ ++    G DD V KP   RE++ R+  I +R   
Sbjct: 81  DLARFIRASSSVPIIMLTARHEAESRIEGLQIGADDYVAKPFEPRELVLRIGNILKRTMP 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP     +  +     +V  L  RER +L  L A  G+ V + ++    
Sbjct: 141 LPAVRTGSIAFGPYVYHLERGELRQGDDVVHLTDREREMLRVLAATPGETVRRGEL---- 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  V E  V+  I++LR+K+  +      + + R +GY +
Sbjct: 197 --NGGGTVNERAVDVQINRLRRKIERDPANPLFLQAVRGVGYRL 238


>gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str.
           Erdman]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 6   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVML--PGIDGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   +    +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 64  EVCARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +           R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 184 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223


>gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +               ++           
Sbjct: 4   ILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFKFVLLDIM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S++P++ ++        +     G DD + KP H  E+         R   
Sbjct: 62  ETCKNIRSFSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEEL-LARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   +          +  +   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHEQIQYKGLLWDEVKHFVSIYEQEVLLTPIEFSLLGLFLRHINYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGY 218
           +   E+  ++SHI  LR KLR         + +   +GY
Sbjct: 180 NANTEDRTIDSHIRNLRDKLRKARFPIDIHLKTVYGVGY 218


>gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +  + +  V+ ++  L   G    
Sbjct: 6   ILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIML--PGISGY 63

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---- 116
           E+   IR  S +  +I +S        +   + G DD + KP + +E++ R+ ++     
Sbjct: 64  EVCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRVN 123

Query: 117 ----RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  + +      GP  +    +      +   +   E  ILE  + N+GK + + +
Sbjct: 124 LTNSQDKEKTRKTITDGPFTLDIYAKSFFKNDKEIDVTPTEFTILENFINNKGKAMTRDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I +  +G  + + +  +V+ +I ++R K+ +     + +++    GY 
Sbjct: 184 IMAMTWGN-NYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYR 230


>gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + D        +   +    + +      +  +  +  ++          L 
Sbjct: 7   LVCDDDRAIVDALEVYLRQENYEVIKAYTGKQALKALAEQKIHLILLDVM--MPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRRYTLL 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   + G + + ++ ++  + GE+  L   E  I+ +LM N G+  +  QI+  
Sbjct: 125 GGAAEKSGVIKNGGLELDTEAKEVRLDGELVKLTATEYGIVLFLMNNIGRVFSIEQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++     + E   V  HI ++R+K+  N      +     +GY I+ 
Sbjct: 185 VWNEPLYSSES-TVAVHIRRIREKMEINPKDPKYLKVVWGIGYKIEK 230


>gi|258591200|emb|CBE67497.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 253

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           LI+D   ++    A     G  L    + E      ++   DV  ++  L       LE+
Sbjct: 31  LIEDERPIRRFLRATLVSQGYRLFEAATGEEGLAEAAARPPDVVILDLGL--PDIDGLEV 88

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIYRR 118
            R +R  + VP+I +S     +  +   D+G DD V+KP        R  +    A    
Sbjct: 89  IRRLREWTAVPIIVLSARGQERDKIAALDAGADDYVSKPFGVGELLARMRVVLRHAARNL 148

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + V    R   V G    L   E R+L  L+   GK V + Q+   ++
Sbjct: 149 TENTDPTFAVGDLHVDLAVRRVVVGGREVHLTPIEYRLLTTLIHYAGKVVTQQQLLKEVW 208

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G      + + +  ++++LR+KL  +      + ++  +GY +
Sbjct: 209 GPQCTE-QAHYLRVYVAQLRRKLETDPARPCYLLTEPGVGYRL 250


>gi|172058932|ref|YP_001815392.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991453|gb|ACB62375.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G  ++  +          + R D+  ++  +  K    +
Sbjct: 3   ILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHK--SGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+   +R    +  ++ ++   +    +   DSG DD + KP    E+LAR+ A   R+ 
Sbjct: 61  EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +      + +    +     G++  L RRE   L  L+    + + +  I   ++G
Sbjct: 121 KAFVSTVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    + +N +++ +  +RKKL        + + R  GY +
Sbjct: 181 IG-ADITDNALDALVRLVRKKLDAAGAPALIQTVRGFGYRL 220


>gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  +       L      D+  ++  L        
Sbjct: 3   ILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNL--PTMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           E+  +IR   Q  +I ++    L+  +   +SG DD + KP    E+LAR+         
Sbjct: 61  EVLELIRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGEA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +          G+   L  +E  +L  LM   G+ + +T+I + ++ 
Sbjct: 121 VALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LR K+    G   + + R +GY ++
Sbjct: 181 I-NFDCDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 221


>gi|225022854|ref|ZP_03712046.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682198|ref|ZP_07405002.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224944378|gb|EEG25587.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658671|gb|EFM48174.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D   + +         G S +  ++      +  S    +  ++  L    G  +
Sbjct: 4   ILIAEDDNGIAEFIARGLESAGYSCDVTDNGPVAFGMARSGAYQLMILDLGLPNMDGTDI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115
           LE  R +   + +P+I ++   +L+  L   + G +D + KP        R  L    + 
Sbjct: 64  LEQLRSL--GTTLPIIVLTARTALEDRLRTLEGGANDYMPKPFQFAELLARVRLRLAESN 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++ +     + +        +  +   L RRE  +LE LM +  + ++++Q+ S
Sbjct: 122 PDMNGANSTQIHHNGMVLDLRAHRVLIDDKWRDLSRRELGLLETLMRHPRQILSRSQLLS 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G+ D     NVV+ +I  LRKK+        V++ R  GY +
Sbjct: 182 QVWGM-DFDPGSNVVDVYIRSLRKKIGADK----VETVRGSGYRL 221


>gi|118593271|ref|ZP_01550656.1| DNA-binding response regulator [Stappia aggregata IAM 12614]
 gi|118434162|gb|EAV40818.1| DNA-binding response regulator [Stappia aggregata IAM 12614]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD   +++        +G+      +         +A  D+  ++      GE  L L 
Sbjct: 2   VDDHRDIRETLARYLIKNGLRATVAENAAQARKTLKAASIDLVVLDIM--MPGEDGLSLC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +     +P+I ++        +   + G DD V KP + RE+LAR+ A+ RR  +   
Sbjct: 60  RHLVETGSMPVILLTAMADDTDRVIGLEIGADDYVTKPFNPRELLARIRAVLRRTSLVPK 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRR---------ERRILEYLMANRGKRVAKTQIFS 175
             +                     L            E ++L   +      + + Q+  
Sbjct: 120 ERDPIEHDRLHFDGWSLNVSRRELLDPEGTSVALSSGEFQLLCAFLKRPKMVLNRDQLMD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              G    AV +  +++ +S+LR+K+  +      + +    GY  
Sbjct: 180 LTTGRT-PAVFDRSIDNQVSRLRRKIEIDPKDPKLIKTVWGGGYMF 224


>gi|83719681|ref|YP_441198.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653506|gb|ABC37569.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 291

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L    G  V
Sbjct: 47  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGLDV 106

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R    +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 107 LRRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 223

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 224 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 264


>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
 gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +         + G  +   ++      L S  + D+  ++           
Sbjct: 4   ILIIDDEKELVALLQDELTERGYQVLAAHNGADGVTL-SKKQPDLIVLDIM--MPEMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E+ R IR     P++ +S   +    +     G DD ++KP             +     
Sbjct: 61  EVCRKIRDEVLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + Y   +    R     + +       ++ GE  PL +RE  I+E L  + G+  ++  I
Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +  ++G +D   +   V  HI K+RKK        + + +   +GY  +
Sbjct: 181 YERVWG-YDSDGDSYTVVEHIRKIRKKFALVSADTEYISTVWGIGYKWN 228


>gi|262369330|ref|ZP_06062658.1| two-component system response regulatory system response regulator
           [Acinetobacter johnsonii SH046]
 gi|262315398|gb|EEY96437.1| two-component system response regulatory system response regulator
           [Acinetobacter johnsonii SH046]
          Length = 238

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVEPDGNRAIRRIIAEQPDMVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TICREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 128 APEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A++ D        +G                +S   DV  ++          LE
Sbjct: 14  LVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDV--QMPRMDGLE 71

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
               +RA   ++P++ ++   ++   +    +G DD V KP    E+ ARV        R
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++   +   + +  D  D    GE   L   E  +L YLM N G  ++K +I  A+
Sbjct: 132 TQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+        + + R  GY +
Sbjct: 192 WS-YDFGGQVNVVELYISYLRKKIDAD-RPALIRTVRGAGYIM 232


>gi|291618521|ref|YP_003521263.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153551|gb|ADD78135.1| BaeR [Pantoea ananatis LMG 20103]
          Length = 279

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D  ++     G+        E    L  + + D+  ++  L       
Sbjct: 53  LILVAEDDFEISDILMSYIKRAGMKAVHAAEGESALALIKTLQPDLVLLDIQLPL--IDG 110

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
             +   +R  S  P+I ++        L     G DD + KP +  E++        R  
Sbjct: 111 WNVLSTLRKESNTPVIMVTALDQDIDKLMGLRLGADDYIVKPFNPSEVVARIEAVLRRAK 170

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +   R  T     F        Q     L   E ++L ++     K  ++ ++
Sbjct: 171 NQAVPQSLIRTRFMTIYTDEFCVEIHSGGQTFTPVLTTTEFKLLTHMAKYPRKVFSREEL 230

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A   L +    +  V+SH+SKLRKK          +S R +GY +
Sbjct: 231 LNAC--LPESDTLDRTVDSHMSKLRKKFEGCGLNGVPESIRGIGYRL 275


>gi|289556030|ref|ZP_06445240.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 605]
 gi|289440662|gb|EFD23155.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 605]
          Length = 272

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G ++                R DV  ++  L    G  VL
Sbjct: 50  LVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDVL 109

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    +  +P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 110 HKLRS--ENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 167

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 168 TTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRV 227

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 228 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 268


>gi|261366515|ref|ZP_05979398.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571787|gb|EFB77322.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  L    +    E L ++   D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYELTIARTSVEAEQLWTNGNYDLVILDVTL--PDGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAIY 116
           +L R IRA S+VP++ ++        +   D G DD + KP        R       +  
Sbjct: 62  DLCRKIRASSKVPIMFLTAADEETDIIMGLDIGGDDYMTKPFKLAVFLSRINALLRRSEN 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +    ++  I++    +     G    L   E ++L   M N    ++  QI S 
Sbjct: 122 FNQEQAETELQSNGIQIQLLKQKVIKNGTPLDLTASEYKLLCLFMENPNIILSPEQILSK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           ++   ++ ++ N +  +I +LR K+ +       + + R +GY   WN
Sbjct: 182 LWDCDEKYIDNNTLTVYIRRLRTKVEDNPADPQKIVTVRRMGYK--WN 227


>gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +          +G ++    +           R D   ++  L        
Sbjct: 5   LLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVML--PDGDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           EL R IR HS+VP++ ++        +   + G DD + KP + RE+LAR+ A + R+  
Sbjct: 63  ELCRQIRTHSRVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R + G +++    R   + G    L   +  +L     + G+ +++ ++   + G 
Sbjct: 123 PQEARLDFGRLQIDPGSRVVRLDGVERRLTSHQFDLLLAFATHAGRVLSRERLMDLVKGE 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            D    +  ++ H+S+LR  + +       + + R  GY  
Sbjct: 183 -DLDAFDRSIDVHVSRLRALIEDDPRHPRRLLTIRGAGYVF 222


>gi|167909712|ref|ZP_02496803.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
          Length = 246

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223


>gi|172056554|ref|YP_001813014.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989075|gb|ACB59997.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G +    +S E    +  +   D++ ++           
Sbjct: 4   ILIVDDEQRMLQLMKLYLTPYGHTCHLVDSAEKAIEIVKTVPIDIALLDVM--MPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  +  P+I ++    ++  +     G DD V KPIH  E+           + 
Sbjct: 62  TLCENIRRIADFPIIMVTARNQMEDVVRGRTVGADDYVAKPIHEGEL--LGRIELLIGRE 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     +   + G D     +   L + E ++L  L+A+  + +++ Q+  +++   
Sbjct: 120 KREQYTFHGLHYDAKGYDCSFDEQKILLTKTEFQLLGKLLASVNRILSREQLVRSLWS-D 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           D+++E   ++SH+  LR+KLR       + +++ R +GY +
Sbjct: 179 DQSIEPRTIDSHMRHLREKLRRSGFPIDEYLETVRGVGYRL 219


>gi|331086531|ref|ZP_08335610.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410589|gb|EGG90017.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E        A  D+  ++           
Sbjct: 4   ILVVDDDIDMITMVQDYLYLKGYEIMSAFDGEMALNKIKFA-PDIILLDVN--MPQMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+   IR     P+I ++     +  +   + G DD + KP   +E    +        R
Sbjct: 61  EVCMKIRELVSCPIIFLTAREEEEDRIKGLEIGGDDYILKPFSLKELEARIKAHLNREER 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +       + +    +      +   L   E  I+E+L  N G+     +I+    
Sbjct: 121 ARKKSVIQYKTGLMIDYSSKKLFYHDKEILLTGLEFGIVEFLSLNPGRVFDIEKIYENT- 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   E  V+   IS++RKK+R     + +++   +GY 
Sbjct: 180 GGYDSDAESRVITVLISRIRKKIRKYTEQEYIETVWGIGYR 220


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +    +             D   ++  L       LE
Sbjct: 26  LVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMML--PDFDGLE 83

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R  +  VP++ ++   +++  +    +G DD V KP    E++ARV A+ RR  +
Sbjct: 84  VLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRTTM 143

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S + +++  +        D  +    GE   L   E  +L YLM N  + ++K QI   +
Sbjct: 144 SVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 204 W-NYDFGGQANVVELYISYLRKKV-DAGRDPMIHTMRGAGYVL 244


>gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G  +    + +       +   D+  ++           
Sbjct: 5   ILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAI-TKNPDIILLDIN--MPDMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---VAAIYRR 118
            +   IR +   P+I ++        +  F  G DD V KP    E+ AR        +R
Sbjct: 62  TVCEAIRNYVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHLRREKR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        I +    R    +       ++E  I+E+L  N+G    +  I+  ++
Sbjct: 122 HSSSAIVQFDKNIVIDYSSRTVFYKNAEINFTKKEFDIIEFLSQNKGIVFDRETIYEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL D   + +VV  HI ++R K  +      +++    GY 
Sbjct: 182 GL-DGCGDNSVVTEHIRRIRTKFLSMSDNPYIETVWGCGYK 221


>gi|228941607|ref|ZP_04104154.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974536|ref|ZP_04135102.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981131|ref|ZP_04141431.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778331|gb|EEM26598.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784939|gb|EEM32952.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817819|gb|EEM63897.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942219|gb|AEA18115.1| two-component response regulator yvcP [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 252

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 21  ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKINPHLVLLDINL--PYFDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 79  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 138

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 139 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 199 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 246


>gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 218

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 6/218 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   + D       D   +++  +  E    L  S   D+  ++  L       + L R
Sbjct: 2   EDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIML--PKIDGIALCR 59

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSN 123
            +R+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A + R +  + 
Sbjct: 60  RLRSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRRGVSTAP 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G +R+     +   Q  +  L  +E  +LE+ + +  +  ++ QI   ++  F+ 
Sbjct: 120 PVLEWGKLRLDPSTCEVFYQDRLLSLSPKEYSLLEFFLRHGRRVFSRAQILEHLW-PFER 178

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 179 LPEEATVKAHIRSLRQKLEAGGAPSDLIETVYGLGYRL 216


>gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 250

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223


>gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D        +G ++ G  +        ++    +  ++  L       L
Sbjct: 3   ILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGL--PDMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R    +   VP + ++   S+   +   DSG DD + KP   +E+LAR+  + RRL 
Sbjct: 61  EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +        V                L RRE  +L+ LM N G+  +K+Q+ + +Y 
Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE +  N +E HI  LRKKL      D + + R +GY
Sbjct: 181 WGDE-LSSNAIEVHIHNLRKKL----PKDFIKTIRGVGY 214


>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 46  LVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMML--PDMDGLS 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGA 163

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ RA      G + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 224 WS-YDFGGHANVVELYISYLRKKI-DAGREPMIHTRRGAGYMI 264


>gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 231

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +    +  V+ ++  L   G    
Sbjct: 5   ILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIML--PGISGF 62

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR  S +  +I +S        +   + G DD + KP + +E++ RV ++ RR+ 
Sbjct: 63  EVCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRRVN 122

Query: 121 VSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++   +           P  +    +      +   +   E  ILEY + N+GK + + +
Sbjct: 123 LNPTGSSNDDVKSLKDGPFTLDIYSKTFFKGDKEIDVTPTEFTILEYFIKNKGKAMTRDE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I    +G  + + +  +V+ +I ++R K+       + +++    GY 
Sbjct: 183 IMKETWG-DNYSNDTKIVDVNIRRIRAKIEENPAKPEFIETVWGTGYR 229


>gi|162295961|gb|ABX83929.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N       +    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKVTNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL+ +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLKEQGIFQMLINVRGVGYRLD 238


>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
 gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S + D+  I+          +
Sbjct: 6   ILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKVDLLIIDVM--MPRLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  RATLKIREQNNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQI 173
             +        V+  G                   L   E  IL  L+ N+GK  +  QI
Sbjct: 124 LGSTVSGDSQAVYEVGGLSINDDLKEVTVDGELVKLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+      V+ N V  HI  +R+K+  N      +     +GY ++ 
Sbjct: 184 YENIWNEDAIGVD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 232


>gi|222151944|ref|YP_002561104.1| hypothetical protein MCCL_1701 [Macrococcus caseolyticus JCSC5402]
 gi|222121073|dbj|BAH18408.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D            +   +  +           D+  ++           
Sbjct: 4   ILIIEDDRDIADLLALTLSGH-YDVTLAHDGKEGYMYIKEQAFDLILLDLM--MPYMNGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+ H+   +I I+    L+  ++    G DD + KP +  E+LARV    R ++ 
Sbjct: 61  TLLGEIKHHTNTKVIIITAKHELEHKVNLLTLGADDYITKPFYQEEVLARVMVQLRNIEK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      +++ ++ R+  +  +   L   E  IL  LM +    ++K +IF+A+ G  
Sbjct: 121 GSSLITHRALKLDTEKREVTLNDKGIQLTNSEFDILTILMKHPEVPLSKQKIFNAL-GNG 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++N V  H+S +RKK         + +   +G+ +
Sbjct: 180 TYVGDDNTVSVHVSNIRKKFSQITDEPYIKTVWGIGFML 218


>gi|221369256|ref|YP_002520352.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332560858|ref|ZP_08415176.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|221162308|gb|ACM03279.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332274656|gb|EGJ19972.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D     D        +G S++            +    D+  ++      G   L
Sbjct: 7   ILLAEDDRQTADYLRQGLLAEGYSVDHVPDGRDALVQATLQPYDLLVVDRM--MPGLDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A  + P++ ++    +   ++   +G DD + KP    E+ AR+AA+ RR  
Sbjct: 65  SLVKALRSAQIKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPA 124

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++    +   +      +  R     G    L  RE R+LE+LM   G+   +T +  A+
Sbjct: 125 LAEGARDLLRVGDLTLDTVRRTVSRGGTEIDLQPREFRLLEHLMRAAGRVQTRTMLLEAV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F      +VVE+H+S+LR K+        + + R  GY +
Sbjct: 185 WD-FHFDPGTSVVETHMSRLRAKIDRPFDKPLLHTVRGAGYML 226


>gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
           29799]
 gi|150274304|gb|EDN01381.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +                  D+  ++  L   G    
Sbjct: 5   ILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVERCREGGVDLVILDIML--PGLDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S VP++ +S +   Q  +  F  GVDD + KP   RE++ RVAAI +R + 
Sbjct: 63  EALRAIRTFSDVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAILKRRRP 122

Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +              V    R   V G    L  +E  +L  L+++ G  + +  +  A+
Sbjct: 123 APAPDAPILGIGGLVVDPAARLVSVDGRPVDLSPKEFDLLLQLVSHPGTAMPRQTLLEAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D    E  +++HI ++R+ +      + + + R +GY  D
Sbjct: 183 WG-PDRPKGERTLDTHIKQVRRAIGPY--AERIVTLRGVGYRFD 223


>gi|77460418|ref|YP_349925.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384421|gb|ABA75934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 242

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I       +   G            +   DV  ++  L   GE  L 
Sbjct: 16  LIVDDDVPIRELMIDYLARFNIHASGVTDGAAMRQAMQAEHFDVVVLDLML--PGEDGLS 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 74  LCRWLRAESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDD 133

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +                  +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 134 RSEQRANIRFDNWRLNSVLRQLIADDGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 194 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKAPQLIKTVRGEGYLFD 237


>gi|332799755|ref|YP_004461254.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697490|gb|AEE91947.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG   L    G  L+   ++     + +  + D+  ++  L        
Sbjct: 4   ILLLEDDLSLIDGLSRLLKRQGFELDIARTVREANTIWADGKYDLLILDVSL--PDGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118
           E+ + +R  S+VP+I ++        +   D G DD + KP         +  +    + 
Sbjct: 62  EVCQKVRQVSKVPIIFLTASDEEMNIVTGLDIGGDDYITKPFKLGVLISRINALLRRVKN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I+V          G++  L   E R+L  LM N    ++K +I   ++
Sbjct: 122 FGTADTEIISNGIKVLLLQGQVYKDGQLLDLTTAEYRLLCLLMQNPNIILSKEKILDKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
                 V++N +  +I +LR K+  N      + + R +GY  + 
Sbjct: 182 DGEGSYVDDNTLAVYIRRLRMKIENNPGDPQMLLTVRGMGYKWNV 226


>gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++  Y ++    G S+    + E       + R ++   +           
Sbjct: 4   ILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIM--MPKMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+     P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 62  DLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +          D            LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSSLMIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEKTEDFQ-IMTVRGLGYK 219


>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 273

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +           L  +   ++  ++      G   +
Sbjct: 46  ILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVM--MPGLDGI 103

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 104 RTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 163

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
             N       RV+  G                   L   E  IL  L+ N GK  +  QI
Sbjct: 164 LGNMHTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 223

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 224 YEEIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEK 272


>gi|197301304|ref|ZP_03166389.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
 gi|197299622|gb|EDY34137.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KINMEELHRYDLILLDIM--MPGMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWEE 220


>gi|183600334|ref|ZP_02961827.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
 gi|188020124|gb|EDU58164.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  L+ DG        G +++ F   +  +     A  D   ++  L    G ++
Sbjct: 3   ILLIEDDRLIGDGLKVGLSQLGFTIDWFADGKQGQVALFDAPYDAVILDLSLPSVDGMEI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R        P++ ++   +L   +     G DD + KP    E+ AR+ A I RR 
Sbjct: 63  LKFWRK--EGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALAEVAARLQALIRRRS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G I +          GE   L  +E  +L   + N  K +++  I   +Y 
Sbjct: 121 GQLSPILKHGHIEMDPVAMTVTCHGERIELKSKELSLLSLFLHNPNKVLSRAFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL    G   + +   +GY +
Sbjct: 180 NWDEEVSSNAVEVHIHHLRRKL----GTRFIRTVHGVGYRL 216


>gi|170756456|ref|YP_001779877.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169121668|gb|ACA45504.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     ++  + G       S         + + D+  ++  +   G    
Sbjct: 7   ILIVEDDNDINKLLCSILKNKGYKSRAAFSGTEALMCVENEKWDMILLDLMI--PGISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR   
Sbjct: 65  EAILKIRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLE 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  NN      I +  + ++ +V   +  L  RE  +LE L+ N  K  +K  IF
Sbjct: 125 FSTDEEKKNNILSYKDITLNKESKEVKVAQTIVILTAREFAVLELLLNNPNKVYSKANIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            +I+G  +   ++N V  H+S+LR KL   N  G D +++   +GY +
Sbjct: 185 ESIWGE-EFLGDDNTVNVHVSRLRSKLSKANNNGEDYIETVWAMGYRL 231


>gi|150398444|ref|YP_001328911.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029959|gb|ABR62076.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------------- 106
           EL R +R  S +P+I ++        L     G DD + KP   R               
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAAN 121

Query: 107 -EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            E  A      +     +   E G + +  +      + E   L   E  IL  L    G
Sbjct: 122 REAAAGGPGPVKNADTPSRSLERGQLVMDQERHTCTWKNESVTLTVTEFLILHALAQRPG 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 VVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRF 236


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  S   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
           LE  R       +P++ ++        +  FD+G DD V KP H    +    A + R  
Sbjct: 63  LEAWRRNDR--TMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G S++   +++  E L  +   D+  +   L       LE
Sbjct: 5   LLAEDDASISEPLARALRREGYSVDV--TVDGMETLDRARSGDIDLLVLDLGLPELDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+     P++ ++       T+   D+G DD V KP    E+           + 
Sbjct: 63  VARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+ +D R   +      L  +E  +L  L+   GK V + QI   ++   
Sbjct: 121 GGEVPVVHGVRIDTDSRRAWLGDRELQLTTKEFDLLRVLVREAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           +       ++ HIS LR+KL +       + + R +G+  + 
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFEK 221


>gi|326797202|ref|YP_004315022.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326547966|gb|ADZ93186.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 243

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++    +    G ++    +         +   D+  ++ FL    E  L
Sbjct: 9   LLVVDDDQDVRELLCDVLSQKGYAVITAENGAAMWPQLQTQTIDLVLMDLFLQ--EEDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR    +P++ ++        +   +   DD + KP + RE+ AR+ A+ RR   
Sbjct: 67  QLARQIRDQYAMPIMMLTGKGDETDRILGLELAADDYMMKPFNIRELTARIYALLRRASA 126

Query: 122 SNNRAETGPIRVFSDGRDPE-----------VQGEVFPLPRRERRILEYLMANRGKRVAK 170
                                          + G+   L   E  +LE L  +  + + +
Sbjct: 127 IPATPIKVEEAHECLRFGHWILDRTARTLKDIHGKQISLTHGEFSLLEVLATHPDRVLTR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            QI     GL +  V +  V+  I +LR+K+  N    + V ++R LGY  
Sbjct: 187 EQIIDYSRGL-ETEVSDRTVDVLILRLRRKIEINPKTPEFVKTQRGLGYLF 236


>gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
 gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
          Length = 231

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 85/224 (37%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G ++    + E    L +  + D+  ++  L        
Sbjct: 8   ILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEAAALITEEKPDLILLDLGL--PDISGH 65

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L  R      ++P++ +S        +   + G DD + KP   RE    +        
Sbjct: 66  DLLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVALRHKL 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +      + G + V    R  +V  +   L  +E  IL  L+ + GK +    I   +
Sbjct: 126 QQQGERPIFQVGDLSVDLVKRIVKVADKEVKLSPKEYEILRVLVQHAGKVITHQHILKHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G    + +   +  ++ +LR+K+         + ++  +GY +
Sbjct: 186 WGG---STDVQYLRVYVRQLRQKIEATPDQPQYILTETGVGYRL 226


>gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+++           L       +  ++          ++
Sbjct: 7   LIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQDIHLIIMDIM--MPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ET    V          +   V  +   L   E RILE L+ N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGTLVLDKKRKIVTVDEKKIRLTPIEYRILELLIENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 228


>gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +  +++        E    +   D+  ++  L       L
Sbjct: 3   ILLVEDDTMIGESVLDCLRAEHYAVDWVKDGHAAELALRTDPYDLVLLDLGL--PRRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +RA     P++  +   ++   +   D+G DD + KP    E+LAR+ A I R  
Sbjct: 61  TLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +        V G   PL  RE  +LE L+A  G   ++ Q+   +Y 
Sbjct: 121 GRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V  N VE +I  LRKKL    G + + + R +GY I
Sbjct: 181 WKDS-VSSNAVEVYIHGLRKKL----GQNLIQNVRGVGYVI 216


>gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 231

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         ++G  +    +      L       +  ++          +
Sbjct: 3   ILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIM--MPKMDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +PLI +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 61  TATMKIRQDNMIPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRRYTT 120

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   +  +          + +   V  +   L   + +IL+ L AN G+     +I+ 
Sbjct: 121 FGSLERSSAVFQTGGLVIDDEQKVITVDKQEVHLTPVQYKILKLLTANAGRVFTIEEIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++ +     E N V  HI K+R+K+  N      +     +GY ++ 
Sbjct: 181 KVWNVRAINPE-NTVSVHIRKIREKIEINPKEPKYLKVVWGVGYKVEK 227


>gi|225377534|ref|ZP_03754755.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM
           16841]
 gi|225210611|gb|EEG92965.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KLNMEELHRYDLILLDIM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWEE 220


>gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151283163|gb|ABR91573.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  N+      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVML--PDIDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++   +R A + VP + ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE+L+ ++G+ + ++ I S I+
Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DI-NFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVLE 222


>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 247

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A + +         G S++   +        +  + D+  ++  L   G    
Sbjct: 22  LLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVML--PGMNGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L   +R  + VP+I ++   +    +   ++G DD + KP         + A +    +
Sbjct: 80  TLLSQLRRRTPVPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRASQ 139

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        +R+ +  R   ++ ++  L   E  IL  L+ + G+ + + +I  AI
Sbjct: 140 APADALFDFTFDDVRINARTRQVWLKADLIDLTAVEFDILYLLVCSAGRVLTREEISLAI 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                    +  ++ HIS +R KL        + + R +GY  
Sbjct: 200 LERR-LMSHDRSLDVHISHIRSKLETL--APFIQTVRGVGYVF 239


>gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
 gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
          Length = 237

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G ++    +      + +S   D+  ++  L        
Sbjct: 11  ILIIDDEPQIRKFLDIALRAQGYAVHVAETGMKGLEILASQGADLLILDLGL--PDMDGA 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I +S  P  Q  +   D+G +D V KP   +E+ AR+  ++R+   
Sbjct: 69  EVLKEMRQWSQIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQQPS 128

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +            V       ++ G+   L ++E ++L  L+ ++GK V + QI S ++
Sbjct: 129 QSEHNLVFNDGQLFVDVAEHSVKLAGDDVVLTKKEFQLLALLIRHQGKIVTQKQILSELW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G+  E  + + +   + KLR KL +  L    + +   +G   
Sbjct: 189 GITHEE-DTHYLRILVKKLRTKLGDSALQPHYIFTVAGIGLRF 230


>gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G S++ F   +  +    SA  D   ++  L       L
Sbjct: 3   ILLVEDDKLIGDGIKTGLSKLGFSVDWFTDGKTGQAALYSAPYDAVVLDLTL--PEIDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  EMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +        + G+   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +         ++            ++ R D   ++  L       +E
Sbjct: 6   LVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVATCRPDAVLLDLGL--PDMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIY 116
           + + +R  SQVP++ +S     +  +   D+G DD + KP    E++       R    +
Sbjct: 64  VIKQLRGWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRRTPTH 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     ET    V    R    +G+   L   E  +LE L+ NRG+ V++ ++   
Sbjct: 124 EPAAADEAVVETEEFTVDLLARKARRRGKSIRLTPTEWHLLEVLIRNRGRLVSQRRLLQE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++G      + N +  +++ LR+KL  +      + +   +GY  D 
Sbjct: 184 VWGSS-YGTQTNYLRVYMAHLRRKLEADPSHPRHLITASGMGYRFDV 229


>gi|153005959|ref|YP_001380284.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029532|gb|ABS27300.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+    A  G  G  L    +L   E L +S   DV  ++  L       ++
Sbjct: 9   LVVDDEAQVRRFLRAALGSRGFRLVEAETLREAEQLATSHNPDVYLLDLTL--PDGDGVD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           L R +R  ++ P+I +S     +  ++  D+G DD + KP    E+LAR+       +  
Sbjct: 67  LARRLREWTRAPIIVLSARGREEDKVNALDAGADDYLTKPFGVNELLARLRVALRHAQAS 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+R+    R+  V+G    L   E R+L  L  + G  +   QI   ++G
Sbjct: 127 PAQPAVLEAGPLRIDLARREVTVEGREVRLTPTEYRLLALLARHAGMVLTHRQILREVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               A E + V  H+++LRKK+         + ++  +GY +
Sbjct: 187 PN--ATEAHYVRVHMAELRKKIEADPARPRLLVTEPGVGYRL 226


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G       +         S   DV  ++  L       +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVARRVREVKSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIHL 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        +   + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ ++  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YESEVETNVVDVYVRYLRNKIDVPGQKSYIQTVRGTGYVM 226


>gi|160879612|ref|YP_001558580.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428278|gb|ABX41841.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +          D   +E                 D+  ++  L   G    
Sbjct: 4   ILIIEDDAAIAAIERDYLAIDHFEVEIALDGRSGMEKALQGGFDLILLDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R    +P++ ++        +     G DD + KP     ++ARV A   +   
Sbjct: 62  TVCCKLRETLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 T PI+       + +D     V      L  +E  +L +L  N      +  ++
Sbjct: 122 LKKTDRTAPIQLNIGSIRINTDTHRVYVNDIEIDLKNKEYELLLFLALNADVVFNRETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             I+G+ D   +   V  HI++LR ++  +      + + R  GY +
Sbjct: 182 ERIWGM-DAMGDNATVAVHINRLRDRIEEDPGNPRYIQTVRGAGYRL 227


>gi|83645259|ref|YP_433694.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83633302|gb|ABC29269.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 235

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    S      L ++   D   ++  L        
Sbjct: 8   ILVIDDEPQILRFLRISLRSEGYEVLQAGSATEGLMLAATEAPDAIVLDLGL--PDMDGQ 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           E  R +R   + P++ +S   S    ++  D+G +D V KP   RE +AR          
Sbjct: 66  EALRQLRRTCRTPVLVLSVRSSETEKVEALDNGANDYVTKPFGIREFVARIRVLLRDREP 125

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L+ S +   +  + +    R   + GE   L ++E  +L  L A     V + Q+ + 
Sbjct: 126 AALRPSADIYHSAGLHIDFVKRSVTLDGEDIHLSKKEYALLARLAATPDHVVTQQQLLAE 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G   +  + + +   ++KLR KL +       + +++ +GY +
Sbjct: 186 IWGPTHKE-DTHYLRIVVAKLRNKLGDAPSAPRFLVTEQGVGYRL 229


>gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
 gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G       + +       S   DV  ++  L   G+   +
Sbjct: 5   LVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFATACSDEFDVIVLDIML--PGKHGYD 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +RA     P++ +S         D FD G DD + KP     +LAR+ A + R   
Sbjct: 63  IVRDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGAP 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G    L  RE  +LE+LM N G  V KT+I  +++  
Sbjct: 123 QRPAILSVGDLSLDPAKHQVSRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +EN+VE +I  LRKKL    G   +++ R +GY  
Sbjct: 183 -NYEGDENIVEVYIGYLRKKLDLPFGTQSIETVRGVGYRF 221


>gi|167747202|ref|ZP_02419329.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662]
 gi|167654162|gb|EDR98291.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G    G         +      D+  ++  L  K     
Sbjct: 4   ILIIEDDKEILKILSDFLSGYGFEAVGKTDGRCICQIIRHQNIDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR+ S +P+I IS   + Q  +D    G DD + KP    E LAR+ +  RR K+
Sbjct: 62  QLLKEIRSCSDLPVIVISARVTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +    +     +      ++G    L  +E RILE LM    K  +K  +F +I+
Sbjct: 122 QTFQKKVLKFQELTLDTGSLTAYLKGVELSLTAKEFRILELLMRYPDKIFSKANLFQSIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G  +   E+N +  HIS LR KL+      + +D+   +GY +
Sbjct: 182 G-SEYLSEDNTLNVHISHLRNKLKAVSSENEYIDTVWGIGYRL 223


>gi|163757498|ref|ZP_02164587.1| two-component response regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162285000|gb|EDQ35282.1| two-component response regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 243

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALETEGYRVETYTDGASALDGLLARPPQLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 68  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAVMRRAAS 127

Query: 122 SNNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +  A  G                +  +      + E   L   E  IL+ L    G   
Sbjct: 128 RDAAAAPGRAAATPTKSLERGNLVMDQERHTCTWKNEAVTLTVTEFLILQSLAQRPGVVK 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 188 SRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKMVDDDFDMIETLYGVGYRF 239


>gi|148548790|ref|YP_001268892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|148512848|gb|ABQ79708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEE 223


>gi|330991619|ref|ZP_08315570.1| Phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter sp. SXCC-1]
 gi|329761638|gb|EGG78131.1| Phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter sp. SXCC-1]
          Length = 244

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++ +D A +           G ++   ++        +  + D+  ++  + G  G  +
Sbjct: 11  ILVAEDDAALSVMLSYNLEAAGHAVMPVDNGLDALREVTEWKPDLVLLDWMMPGLSGVDL 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
               R+  A   +P+I ++     + ++   D+G DD + KP     + ARV A+ RR  
Sbjct: 71  CRRLRMATATRYLPVIMLTARGEERDSIHALDTGADDYLVKPCGMDVLHARVRAVMRRCA 130

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + +++      I V   GR     G    L   E RIL +L+ N  +  ++ 
Sbjct: 131 GRGATAAAEQNDDVLGFADITVDHGGRRVTRGGSAIALGPTEYRILLHLLRNPRRVFSRA 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +I +A +      VEE  V+ HI +LR  L    G D + + R  GY +D
Sbjct: 191 EILAAAWDDR-IHVEERTVDVHIRRLRLALNAGGGVDLIRTVRSSGYMLD 239


>gi|327438778|dbj|BAK15143.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +              +E     +       +    +  ++  L        
Sbjct: 6   IFIVEDDPKIAALLADTLRKYQYEVETIKDFDSLMEQCLAFSPHIILLDINL--PSYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R +R  ++ P++ IS        +   ++G DD + KP ++  +        R    
Sbjct: 64  YWCRELRQFTKCPILFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYG 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    +   G + ++ +  + +++  V PL ++E  IL  LM    K V++ Q+  
Sbjct: 124 EYSARQEERKIVQGQLTLYLERMELQLKELVVPLQKKECVILGLLMGQAPKVVSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++      V+EN +  +++++RKKL +      +++ R  GY  
Sbjct: 184 ELWDDQAF-VDENTLNVNMTRVRKKLADYGISSVIETVRGAGYRF 227


>gi|329116852|ref|ZP_08245569.1| putative sensory transduction protein RegX3 [Streptococcus
           parauberis NCFD 2020]
 gi|326907257|gb|EGE54171.1| putative sensory transduction protein RegX3 [Streptococcus
           parauberis NCFD 2020]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  ++    S E    L       +  ++  L        
Sbjct: 4   ILIVEDNQEIANILQEFLRKENYTVATAESGEKAITLYQKYGAKLIILDIML--PEMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR  S   ++  S        L     G DD      +  +IL        + K 
Sbjct: 62  QVCSKIRESSNAHILIASAKNQKADNLKGLYLGADDY-IGKPYDIDILLAKINGIFKRKY 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      G +++ +  R   V      L  +E  +L+ LM NRG  + K  +F+ I+G  
Sbjct: 121 NQEEFILGGLKLNTIMRTLTVNDHQVNLTEKEFELLKLLMENRGVTLKKDYLFTTIWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D   E   +  HI  LR+K+  +    + + +   +GY  D
Sbjct: 180 DSLSELQTLAVHIRWLREKIEKDPKNPEHIVTVWGIGYRFD 220


>gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +  +++        E    +   D+  ++  L       L
Sbjct: 3   ILLVEDDVMIGESVLDCLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGL--PKRDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R +R    + P++  +   ++   +   D+G DD + KP    E+LAR+ A I R  
Sbjct: 61  GLLRDLRGRKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +        V G    L  RE  +LE L+A  G   ++ Q+   +Y 
Sbjct: 121 GRAEPVFEHEGITIDPQAHAAMVDGTPVALTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V  N VE +I  LRKKL    G + + + R +GY I
Sbjct: 181 WKDS-VSSNAVEVYIHGLRKKL----GPNLIQNVRGVGYVI 216


>gi|291543807|emb|CBL16916.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 263

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +      L   +G+++    +        +     +  I+          L 
Sbjct: 28  LVADDDRDIVRAIATLLEQEGLTVLRAYNGLEALEAVAEHPVSLILIDVM--MPKLDGLS 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P++ +S        +     G DD + KP H +E+ ARV +  RR    
Sbjct: 86  AMMKIREQKNIPILILSAKSEESDKILGLSMGADDYIAKPYHPQELAARVKSSLRRYLHL 145

Query: 123 NNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +           D R   V GE   L  +E +I+E  + N G+  +  +I+
Sbjct: 146 GAADSARMQKLIRVGGLEYDPDTRQLTVDGEPVRLTSKELKIMELFLRNPGRIFSAEEIY 205

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S ++     AVE N V  HI  +R+K+  N    + +     +GY +
Sbjct: 206 SRVWNEDAYAVE-NTVMVHIRHIREKIEINPREPNYLKVVWGIGYQL 251


>gi|188990862|ref|YP_001902872.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732622|emb|CAP50816.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 256

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D  +     +G   E             +   D+  ++  L        E
Sbjct: 34  LVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGL--PDINGFE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S+VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 92  VCRTLRGFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVA 151

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G   +  DG        + PL R E  +L  L+   G  ++++Q+    
Sbjct: 152 VAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRSQLMDRG 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           +    ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 212 WDASADSAD-RTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV 256


>gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 8   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVM--MPNMDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 66  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 125 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 184 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 223


>gi|330830930|ref|YP_004393882.1| TorCAD operon transcriptional regulatory protein TorR [Aeromonas
           veronii B565]
 gi|328806066|gb|AEB51265.1| TorCAD operon transcriptional regulatory protein TorR [Aeromonas
           veronii B565]
          Length = 237

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A+ ++     F  +G  +    + +    + +    D+  ++  L   GE  L
Sbjct: 5   ILVVEDDAVTREKLTGYFEREGYRVTAVENGQEMRAVLAEQPVDLVMLDINL--PGEDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L R +RA S V +I ++        +   + G DD V KP   RE+L RV  +  R   
Sbjct: 63  LLTRELRARSTVGIILVTGRSDAVDRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISL 122

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V+++    GP R     R     G    L + E  +L   +A+ G+ +++ 
Sbjct: 123 AAAAPSEPAVADDAVRFGPWRFDIPRRQLSKDGVPVRLTKAEYEVLVAFVAHAGRVLSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +I + I    D    +  ++  I +LR K+           +    GY  
Sbjct: 183 RILTLISHRGD-GPSDRTIDVLIRRLRGKMEADPRDPQLFVTVHGEGYLF 231


>gi|325105314|ref|YP_004274968.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324974162|gb|ADY53146.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   ++   +     +G +     S      L      ++  ++  L     +  
Sbjct: 7   IAVVEDDENLRFLVVHRLKSEGYTTVETGSGGDAVELVLKENPEIVLLDWMLPA--MQGS 64

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R       +I ++        +D ++ GV D V KP +   ++A + +  + L 
Sbjct: 65  EVCKTLREKGYDGLVIMMTAKAQDLDKIDAYNFGVSDYVTKPFNMDVLVALLDSKVKFLV 124

Query: 121 VSNNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    +    +             G+   L   E RIL Y + N  K +++  +   +
Sbjct: 125 NHDKHEISRFGDMEHHPPHIHSIVKNGKKIELTILENRILLYFLKNVNKVISRDDLMLEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G ++  V    ++ HI +LRKK+       + + + R +GY  +
Sbjct: 185 WG-YNSDVNTRTLDMHIVRLRKKIEENPDRPEYLQTIRGVGYKFN 228


>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
 gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +             S   DV  ++  L       +
Sbjct: 4   ILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLML--PELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ +
Sbjct: 62  EVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   +     V           R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRSGEKSYIQTVRGTGYVI 226


>gi|310815788|ref|YP_003963752.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308754523|gb|ADO42452.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 243

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    S        S    D+  ++  L       L
Sbjct: 4   ILIVDDDPEIRSLLSRYLSGQGFRVTMAASRRECMQRLSHETPDLVVLDVLL--PDGSGL 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +  A+  VP++ ++        +   + G DD + KP + RE++AR+ A+ RR+ 
Sbjct: 62  EMCRELSSANPHVPVVLLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRRVA 121

Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                       +F+         +     G    L   E  +L   +   G+ +++ ++
Sbjct: 122 SQPEEVAAPATYLFAGLSADTALHQVLAADGTALELTGAEFELLCVFLERPGRVLSRLRL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                    E ++   V+  +S+LR+KL  K       + R  GY +
Sbjct: 182 LDLTRNREHEPLD-RSVDVLMSRLRRKLAEKTSEPLFKTVRNAGYQL 227


>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
 gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          DG S++     +        A+ D   ++A          
Sbjct: 3   ILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAM--MPVMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  +  RA     P++ ++   + +  +   D G DD + KP   RE+LAR+ AI RR  
Sbjct: 61  EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +          +  +   V   EV  L  +E RILE LM NRG  +++ QI  +I+ 
Sbjct: 121 ATADNEIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             DEA   NV++  I  +RKKL      D +++KR LGY 
Sbjct: 181 FSDEA-SSNVIDVLIKNIRKKLGEHG--DIIETKRGLGYV 217


>gi|167463036|ref|ZP_02328125.1| DNA-binding response regulator [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381413|ref|ZP_08055412.1| two-component response regulator YvcQ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154640|gb|EFX46915.1| two-component response regulator YvcQ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +           G  +      E  +         +  ++  L        
Sbjct: 4   IFIVEDDNKIASILKETLEKYGYDVRRSTKFEDIKSDFIETDPQLVLMDVNL--PRFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAA 114
              R IR+ S VP+I IS        +   ++G DD + KP H        + +L R   
Sbjct: 62  YWTRQIRSISNVPIIFISARVGEMDQVMAIENGGDDYITKPFHLDVVLAKIKSVLRRTYG 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            Y     S +  +   + +       E + +   L + E  +L+ L    G+ V++  + 
Sbjct: 122 EYAVQSQSRDEWDLEGLHLDRSKNVLEWKEQKTELTKNECLLLDCLARKVGQIVSREDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++   D  V++N +  +++++RKKL +      +++ R  GY +
Sbjct: 182 EALWDDVDF-VDDNTLTVNVTRVRKKLEDIGITKAIETVRGQGYRL 226


>gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G ++E  ++        S     +  ++  L   G    
Sbjct: 5   ILVIDDDRELCGLLEEYLVAEGFAVESVHTGPQGAEQGSQGNYALIVLDVML--PGLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 63  DVLRRIRGESSVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRRQST 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +             G + +    R          L   E  +LE L+A  G+ +++  I 
Sbjct: 123 AQKDGTAAEAVLVVGDLVLDPGRRTVLQGERSVVLTSIEFSVLELLLAQAGRVISRDDIC 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           S   G    + +   ++ H+S LR+KL     G + + S R +GY
Sbjct: 183 SQALGRQLNSFD-RSIDVHVSSLRRKLGPAGDGSERIKSVRGIGY 226


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  L+ +       ++G  ++     E   +L      DV  ++  L    G ++
Sbjct: 3   ILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGMEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      + P++ ++   S++  +   DSG DD + KP  + E+LAR+ A+ RR  
Sbjct: 63  LLKLRE--EGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S           +  + +  +  G    L ++E + L  L  N+ + ++K  +  ++Y 
Sbjct: 121 ESKTSFIKIKDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V  N +E  I++LRKK+        + + +  GY I
Sbjct: 181 T-DRFVSINAIEVLINRLRKKIDKDYPLKLIHTIKGFGYMI 220


>gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
 gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +++      G  G S++  +  +   +  +    D++ ++  L    G  V+
Sbjct: 4   LIVEDEPHLQEQLAVALGRAGYSVDRASDGKEGLYFGTEYNYDIAIVDLGLPQIDGMDVI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
              R   ++   P++ ++   S Q  +   + G DD V KP    E++AR  A + R   
Sbjct: 64  R--RWRESNRIFPVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++ +    GPI + ++ +   +  E   L   E R+LEYLM +  + ++K  +   IY  
Sbjct: 122 ITQSSIRLGPIELDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  I +LRKKL     + P+++ R +GY ++
Sbjct: 181 QDFERDSNTIEVFIGRLRKKLDPDNQWKPIETVRGMGYRMN 221


>gi|229019664|ref|ZP_04176472.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025901|ref|ZP_04182296.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735404|gb|EEL86004.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741627|gb|EEL91819.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 237

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 6   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 64  YWCRQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 124 EYASVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 184 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 231


>gi|225017481|ref|ZP_03706673.1| hypothetical protein CLOSTMETH_01408 [Clostridium methylpentosum
           DSM 5476]
 gi|224949720|gb|EEG30929.1| hypothetical protein CLOSTMETH_01408 [Clostridium methylpentosum
           DSM 5476]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +       D G S +          L    R D+  ++  L        
Sbjct: 18  ILIVEDDAAIANLIRVSLTDAGYSCQNAPDGITASNLIERNRYDLILLDIML--PEINGY 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I   +  P+I ++    ++  +     G +D + KP    E+LAR+  + RR   
Sbjct: 76  ELMEYI-RPTGTPVIFLTARSEVRERVKGLHLGAEDYITKPFEIIELLARIEVVLRRYNK 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +++ ++ R     G+   L  +E  +L   + N+   + +  IF  ++   
Sbjct: 135 FSRMLTEGEVQIDTESRLVHKNGKKIDLTIKEYELLLLFVRNKNIALFREVIFERVW-ES 193

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   V+ H+ +LRKKL        + S   +GY ++
Sbjct: 194 DYLGDSRTVDLHVQRLRKKL---GWEKKIKSVYKVGYRLE 230


>gi|223983562|ref|ZP_03633745.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM
           12042]
 gi|223964490|gb|EEF68819.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM
           12042]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A ++          G +    +              D+  ++  L   GE   
Sbjct: 4   LLLVEDEAPIRTLMRMALTTAGYAALEMSDGRTLIETLEQGGIDLILLDVML--PGEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR + QVP+I +S    L   +    +G DD + KP    E+LARV ++ RR   
Sbjct: 62  TLLDKIRRY-QVPVIFVSARSQLADKVQALQAGADDYITKPFEMMELLARVESVLRRTGR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  +   + +  D R       V  L  +E  +  +L+ NR   + + +I   ++   
Sbjct: 121 KNSVLKFQNLTIDEDQRQVYGPAGVIELTPKEFDLFVFLIRNRNIALYREEILEKVW-HD 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D       V+ HI+ LRKKL        + S   +GY ++
Sbjct: 180 DYEGTTRTVDMHIASLRKKL---GLSKQIVSVYKIGYRLE 216


>gi|222084364|ref|YP_002542893.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221721812|gb|ACM24968.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 239

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +  ++E  +S    +   +    D+  ++  L   GE  L
Sbjct: 6   LLLVEDDREIRALLEEFLTREDYTVEAVDSAAAMDRALARGFPDLIILDLML--PGEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
              R IR  S+VP++ ++        +   + G DD + KP + RE+LAR+         
Sbjct: 64  SACRRIRTRSRVPILMLTAKSEDIDRILGLEMGADDYLGKPFNPRELLARIRAILRRAGP 123

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +     ++  G I                 L   E  +L   +    + +++ Q
Sbjct: 124 ERPEEVVGSRRRKSFAGLIVDLDGRAIEVEGEGPMRLTTAEFDLLVCFLERPRRVLSRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           +     G   +  +   ++  +S+LR KL      G   + + R  GY +
Sbjct: 184 LLDWTRGRGADPFD-RTIDVTVSRLRTKLAQYLPDGAQIITTVRNAGYLL 232


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD A + D     F  +G  +    +      L      D+  ++           
Sbjct: 4   LLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQSPDLVILDVM--MPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  ++IRA S+VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR   
Sbjct: 62  ETLKLIRAKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAAN 121

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                    +           R   ++GE+  L   E  +LE +++  G+ + K ++   
Sbjct: 122 DKEEDLATDLVSGNLLLQRKDRSVYLEGELIELTTSEYTLLECMLSLPGQVLTKQELSEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             G      +   ++ HIS LRKK+     G   + + R +GY  
Sbjct: 182 ALGRKLTMYD-RSLDMHISNLRKKVGTLINGEPRIKTVRGVGYIF 225


>gi|75763158|ref|ZP_00742928.1| Two-component response regulator yvcP [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899608|ref|YP_002448019.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902969|ref|ZP_04067109.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228967519|ref|ZP_04128546.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229152642|ref|ZP_04280830.1| Two-component response regulator [Bacillus cereus m1550]
 gi|74489353|gb|EAO52799.1| Two-component response regulator yvcP [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218543835|gb|ACK96229.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228630788|gb|EEK87429.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228792174|gb|EEM39749.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228856645|gb|EEN01165.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 252

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 21  ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKINPHLVLLDINL--PYFDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 79  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 138

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 139 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 199 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 246


>gi|238925636|ref|YP_002939153.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656]
 gi|238877312|gb|ACR77019.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +   +  +    G  ++  +       +      D+   +           
Sbjct: 4   ILIVEDDKELSLLFQKVLEKSGYQVKSASDGAQALEVLDREYIDLIISDIM--MPVMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           EL   +R A  Q+P++ I+   S       F SG DD + KP++  E++    A + R  
Sbjct: 62  ELVSELRSAGYQIPVLMITAKSSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ ++   G   +  D        E   LP++E  +L  L A+ G+   K Q+   ++G
Sbjct: 122 ILNEHKIVIGSTELDYDAMTVVTGDEALVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + + +E HI ++R++ +    F+ + + R LGY 
Sbjct: 182 -YETEADPHTIEVHIGRIRERFKENPDFE-IVTMRGLGYK 219


>gi|224371346|ref|YP_002605510.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223694063|gb|ACN17346.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G  +   +  +       +    +  ++  L         
Sbjct: 7   LIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIML--PRLDGKT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I I+        +  F+ GVDD + KP   RE++ARV A+ RR    
Sbjct: 65  VCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRTFKK 124

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++      GP+++    R  E+ G    L   E  I   L+ +  +   + Q+   + G 
Sbjct: 125 SSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIEKVQG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++    E  ++ HI  LRKK+     G   + S    GY I
Sbjct: 184 YNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224


>gi|188583284|ref|YP_001926729.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179346782|gb|ACB82194.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 253

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++     L  + G  + G  S      L      D+  ++  L   G    
Sbjct: 21  ILLIEDDDGMRVLVTRLLRESGYRVTGCRSGAEMWSLLPGKSVDLVLLDVML--PGASGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R+   VP+I +S        +   + G DD V KP    E+LAR+ A+ RR  +
Sbjct: 79  DLLRALRSKGTVPVIMLSARNEEADRVLGLELGADDYVAKPFGRPELLARIRAVLRRTTI 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172
           +         +V +                          E  +L   + + G+ + + Q
Sbjct: 139 APAATAAERAQVLTFAGWRLDLRSRQLTDPGGAAVDLSGAEHDLLMVFLEHPGRVLGREQ 198

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           I     G    A  +  V++ +S+LR+KL    G    + + R  GY +
Sbjct: 199 ILEMSRGRL-AAPSDRSVDTLVSRLRRKLEPPEGTLPVIKTVRGSGYMM 246


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   N  E    +      D+   +          L
Sbjct: 5   ILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDI--SMPNMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            L + +RA SQVP+I +S     +T +   D G DD + KP +  E+    R       +
Sbjct: 63  ALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAPV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G   + +     +V+G    L  +E  +L YL  + GK V    + S+++G
Sbjct: 123 AEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  E  +   + +LRKK+         + ++R++GY  
Sbjct: 183 ADHAEQSE-YLRVFVGQLRKKIEGENSNKRYILTERWIGYRF 223


>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 261

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+ +           +       +  ++          ++
Sbjct: 10  LVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEALMVLEEEEVHLIIMDIM--MPRMDGIK 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR   ++P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 68  ATFKIRESKKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYIRF 127

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  E     V        D +   V G+   L   E +IL+ LM N+G+  +   I+ +
Sbjct: 128 GNYKENKNAIVVRGLTLNKDAKTAMVDGKEVSLTLTEYKILKLLMENKGRVFSIEHIYES 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++       E N V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 188 VWQEPFYNGE-NTVAVHIRRIREKIEINPREPEYLKVVWGIGYKIEK 233


>gi|30248529|ref|NP_840599.1| response regulator baeR [Nitrosomonas europaea ATCC 19718]
 gi|30138415|emb|CAD84425.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      +              ++  ++  +   G   L
Sbjct: 4   ILIVEDEPRLARLEADYLQHAGFQTHCLSQGLEVIPWLKENTVELILLDLMV--PGRDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR+ SQVP+I ++        L   + G DD + KP   RE++ARV A+ RRL+ 
Sbjct: 62  DICRDIRSFSQVPVIIVTARIEEIDRLLGLEMGADDYICKPFSPREMVARVKAVLRRLQP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +    + +       +  G    L   E ++L  L    G+  ++ ++   IY   
Sbjct: 122 PAPNSAQQALTLSPQSFKVQYDGREIELTAVEFQLLYTLYQQPGRIFSRARLMDLIY-QD 180

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              V +  ++SHI KLRKK+       + + S    GY  D
Sbjct: 181 QRIVSDRTIDSHIKKLRKKIAELIPEKEVICSVYGAGYRYD 221


>gi|308234020|ref|ZP_07664757.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Atopobium vaginae DSM 15829]
          Length = 246

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   +++  I    +    ++ F+          +    +  ++  L    G  +
Sbjct: 15  IYVVEDDVSIQEIEIIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNTI 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113
               R     S +P+I I+   +    +   D+G DD + KP    E       +L R  
Sbjct: 75  TRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRAQ 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +      +    G I +        V      L  +E  +L YLM + G    +  +
Sbjct: 135 TPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREVL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             A++G FD   E   V+ HI  LR+KL +      V + R +GY 
Sbjct: 195 MQAVWG-FDFEGESRTVDMHIKTLRQKLGDASC--YVHTVRGVGYC 237


>gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB900]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|226330499|ref|ZP_03806017.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
 gi|225201294|gb|EEG83648.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   +    DV+ ++  L    E  +
Sbjct: 3   ILIIEDNILLRHHLSVQFRDAGHQVDAAEDAKEADSFIAEGTPDVAIVDLGL--PDEDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R  R ++   P++ ++   S Q  +   ++G DD V KP H  EI+AR+ A + R +
Sbjct: 61  SLIRRWRENNITLPIMVLTARESWQEKVSALNAGADDYVTKPFHFEEIIARIQALMRRNM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 121 GIASQTLAIEPFELDLSRKEFMISGEQIKLTAFEYTILETLMRNQNKVVSKDALMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D V + R  GY  D
Sbjct: 180 PDAELKESHTIDVLMGRLRKKILEKYPDDVVVTVRGQGYRFD 221


>gi|170747205|ref|YP_001753465.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653727|gb|ACB22782.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 244

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
             +++D   ++         +G      +     + L +S     +  ++  L   GE  
Sbjct: 7   IAIVEDDPDIRALLAGYLEGEGFRTVALDGGAALDRLLASGVAPHLVVLDWML--PGEDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R     P++ ++        +   + G DD V+KP + R +LAR+ A+ RR  
Sbjct: 65  LSICRRLRESGGPPIVMLTAKDEDIDRVLGLEMGADDYVSKPFNPRVLLARIRAVLRRAH 124

Query: 121 VSNNRAETGPIRVFS----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +  +A        S                      PL   E  +L   +    + +++
Sbjct: 125 GAGVQAAEAASERLSVADLVVDLAARTVLTGEPAAEVPLTSAEYDLLHCFVTRPQRVLSR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
            Q+     G   +A +   ++  +S+LR KL          + + R  GY +
Sbjct: 185 DQLLDWTRGRTADAFD-RTIDVQVSRLRHKLDASGSQAASLLKTVRNAGYIL 235


>gi|323495068|ref|ZP_08100157.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
 gi|323310725|gb|EGA63900.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +         G  ++  N  E  +  L+     D+  ++  L   G+  
Sbjct: 5   ILVVDDDQEICELLEEYLTKQGYQVDAVNDGEQMKATLEQQGYPDLILLDVML--PGDDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L + +R HS VP+I ++        +   + G DD + KP + R + AR+ A+ RR+ 
Sbjct: 63  FTLCQQVRRHSSVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLRRVN 122

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V                   +   +         +   L   +  +L   +    + + +
Sbjct: 123 VSEELPASATAKTIVFGDWQLDPLAHRITHLETQQSHDLSGSDFALLMLFLKRPNEVLDR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I  A  G      E   ++  +S+LR++L +       + + R  GY +
Sbjct: 183 DTISFATRGREALPFE-RGIDVQLSRLRQRLGDSARFPHYIKTMRGNGYIL 232


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +         S   D   ++  L       +
Sbjct: 4   ILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLML--PEINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R IR     P+I ++   S+   +   D G DD + KP          R +L +V  
Sbjct: 62  EVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRQVDL 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +         E   I +  + R  +   EV  L +RE  +L  LM N     ++  + 
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++GL D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 SKVWGLED-GVETNVVDVYIRYLRNKIDVAGQPSYIQTVRGTGYVM 226


>gi|148270636|ref|YP_001245096.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170289342|ref|YP_001739580.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147736180|gb|ABQ47520.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176845|gb|ACB09897.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 6   LIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFP-DGVAMDE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+   
Sbjct: 65  IPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKE 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  D
Sbjct: 125 QKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG--D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G   + + R LGY  
Sbjct: 183 DYVSDRVVDVHISAIRSKI----GKGWIKTVRGLGYKF 216


>gi|332715895|ref|YP_004443361.1| two component transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062580|gb|ADY66270.1| two component transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 243

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G  G  +         E   + +  D+  ++  L       L
Sbjct: 9   ILIVDDDPEIRTLLAKYLGSQGFRVSMAADRREFEEQFACSDPDLIVLDVML--PDGSGL 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R ++    + P+I ++        +   + G DD + KP + RE+ AR+ A+ RR  
Sbjct: 67  DICRDLQGRRPRTPVILLTALKEDVDRIVGLEIGADDYLGKPFNPRELTARIKAVLRRAV 126

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +     F                GE   L   E  +L+  +   G+ +++ Q+
Sbjct: 127 PQEVPRGSSTAYGFADFTADPEQRSVIHAGGERIELTGAEFDLLKVFLDRPGRLLSRDQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                G  D    +  V+  +S+LRKKL          + R  GY +
Sbjct: 187 LDLTQGK-DRGPFDRSVDVLMSRLRKKLETDARAPIFKTVRNGGYQM 232


>gi|312959878|ref|ZP_07774393.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285825|gb|EFQ64391.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 254

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I       +   G            +   DV  ++  L   GE  L 
Sbjct: 28  LIVDDDVPIRELLIDYLARFNILAIGVTDGAAMRLAMHAEAFDVVVLDLML--PGEDGLS 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD ++KP   RE++AR+  I RR++  
Sbjct: 86  LCRWLRSESDIPILMLTARCEPTDRIIGLELGADDYMSKPFEPRELVARIQTILRRVRDD 145

Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                               +     G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 146 RTEQRANIRFDNWRLNSVLRQLVADNGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL +       + + R  GY  D
Sbjct: 206 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKAPQLIKTVRGEGYLFD 249


>gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 231

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   V++  I      G   +GF + E    +  +   D+  ++  L G  G ++
Sbjct: 4   IYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNVPDLILLDIMLPGIDGIEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R        P+I ++   S    +   D+G DD V KP    E++AR+ A+ RR  
Sbjct: 64  LKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLRRSA 123

Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N   +              +  D     V  E   L  +E  +L YL+ N+   +++ 
Sbjct: 124 KINVAQDKATNDLSASNGLLVLNHDFHKVYVNNEEVILTLKEFELLYYLLKNKNIVISRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I   ++  ++ A E   V+ HI  LR KL   +    +++ R +GY I
Sbjct: 184 KIMDEVWD-YNYAAETRTVDVHIKTLRHKLG--VASKLIETIRGVGYKI 229


>gi|256845527|ref|ZP_05550985.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785176|ref|ZP_06750464.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
 gi|256719086|gb|EEU32641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294486890|gb|EFG34252.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++             ++     E    + S    DV  ++  L    +   
Sbjct: 7   ILIIEDDKNIQRLLALELRHKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLML--PKKSGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ + +R  +  P+I I+   S+   ++  D G +D + KP    E+    RV+   +  
Sbjct: 65  EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      I++    +   +  E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +K     + + R  GY  
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKIDSKS--KYIHTIRGFGYIF 222


>gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G ++    +      + S     ++ ++          + 
Sbjct: 7   LVVEDEKEIADAIEIYLKNQGYNVFKGYNGIEGLEIISKEEIHLAIVDIM--MPRMDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR    
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQLRRYSKF 124

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +N    G + +  D  +  V G    +   E +IL  LM N G+  +  +
Sbjct: 125 LSLVGVEKEKSNSFVIGGLELNVDTVELTVDGNPVKITPIEFKILHLLMQNPGRVFSPEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           I+  ++   ++A+  + +  H+  +R+K+  N      +     +GY I+ 
Sbjct: 185 IYERVWN--EQAINTDTIMVHVRNIREKIEINPKNPKYLKVVWGVGYKIEK 233


>gi|163744741|ref|ZP_02152101.1| DNA-binding response regulator ChvI, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381559|gb|EDQ05968.1| DNA-binding response regulator ChvI, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  + +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTAMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V              E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VETNEVGDTEETKVMERGELRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADDEFSAIETLYGIGYRYNE 232


>gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V D       + G  +E            ++   DV  ++  L       L+
Sbjct: 4   LLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRML--PQVDGLK 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IRA     P++ +S    +   +    +G DD + KP    E++ARV A+ RR   
Sbjct: 62  ILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGPA 121

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E       +   GR     G    L +RE RILEYL+ + G+ V ++ +   ++ 
Sbjct: 122 IAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++   + N+++ H+S+LR+KL        +++ R  GY 
Sbjct: 182 -YNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYV 220


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++          G  ++     E   +L  +   D   ++  L       + 
Sbjct: 4   LVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGL--PVMDGIS 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R  R   +VP++ ++        +   D+G DD V KP H  E+LARV A I R   
Sbjct: 62  VLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  E GP+R+ +      V G    L   E R+L+YLM ++   V+++++   +Y  
Sbjct: 122 HATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDYLMHHQDSVVSRSELIEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R  GY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GIDLIETIRGQGYRL 216


>gi|104780529|ref|YP_607027.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95109516|emb|CAK14217.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 231

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +               ++ D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAELTAEYLQANGFEVAVEGDGGRAARRIIDSQPDLVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + R +R     P++ ++        +   D G DD V KP+  R +             
Sbjct: 66  SICRRVRGQYAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARITALLRRSEA 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+ + S  R+  + G++  L   E  +L  L +N G+ +++ +IF+++ G
Sbjct: 126 PERRQDLTFGPLHIDSRQREARLGGQLIELTGAEFDLLWLLASNAGRVLSREEIFTSLRG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     ++  ++  ISK+R K+ +       + + R  GY  
Sbjct: 186 VG-YDGQDRSIDVRISKIRPKIGDDPITPRLIKTLRSKGYLF 226


>gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +R  ++   P+I ++    L   L  F SG DD + KP    E+ AR+ A+ RR 
Sbjct: 61  TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    RA          D  +   +G++  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +  +     + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKRSDKPLLHTVHGVGYRL 220


>gi|75907669|ref|YP_321965.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701394|gb|ABA21070.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +    +  + G  ++     E  EWL S    D+  ++  L       L
Sbjct: 3   ILLVEDDYEQLEPLQGILSEAGYIVDTAEDGEIAEWLISQKDYDLLILDWML--PTISGL 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R    +    P++ ++   +    +   D+G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  SLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +                + +    L  RE R+LEYLM +  + + ++QI  A++ 
Sbjct: 121 NWQGDSLRVADLQLHLAYLTVEREQLKVELSPREARLLEYLMRHPNQVLTRSQIEEALW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    E N +   + KLR +L+     + + +   +GY ++
Sbjct: 180 EWGMEPESNALTVLVRKLRHRLQQVDAAEWIRTVYGMGYRLN 221


>gi|117924809|ref|YP_865426.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608565|gb|ABK44020.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 250

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +              +   +S    + +    + DV  ++  L    E  L
Sbjct: 7   ILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLIL--PDEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S +P+I +S        +   + G DD V+KP H RE+LAR+ ++ RR + 
Sbjct: 65  QLCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARS 124

Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   P +                     G    L   E  +L   + +  + +++ 
Sbjct: 125 LPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVLSRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           QI    YG   E      ++  +S+LRK+L  N      + + R  GY  
Sbjct: 185 QILDLTYGKDQEPFG-RTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVF 233


>gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   V++         G   +   + +      SS   D+  ++  L       
Sbjct: 5   LILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAILEASSYNPDIVLLDLGL--PDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           +E+ R IR+ S +P+I IS        +   D+G DD + KP          R    R+A
Sbjct: 63  VEIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +    +   +    G + +        + G+   L   E ++L  L  + GK +  T I
Sbjct: 123 IMQGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I+G      +   +  +++ LRKK+ ++      + +   +GY +
Sbjct: 183 TQEIWGRS-WENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGYRM 229


>gi|295090358|emb|CBK76465.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +         G  ++   +    E        D+  ++  L        
Sbjct: 3   ILVVEDDRLLNNTLCYNLSTAGYEVDAALTKSVAERFCRKQEYDLIVLDINL--PDGNGF 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R I  +H  + +I ++        L  ++ G DD V KP        +VAA+  R++
Sbjct: 61  DFCRDIKDSHPDIAVIFLTANDMESDMLKGYELGADDYVTKPFPMSVFQKKVAALLARIR 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +    G + +          GE       E R+L+ L  N    + +  +   ++
Sbjct: 121 KQSGGDFYNDGNLFINFTEMTATRGGESISFTPMEYRLLKVLTKNPQIVLTRQVLLEKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +    V+E+ + S IS++R K+ N      + +   +GY 
Sbjct: 181 DIDGNFVDEHALTSTISRVRNKIENPDHA-YIKTVYGMGYM 220


>gi|257870434|ref|ZP_05650087.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804598|gb|EEV33420.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQTKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      +V  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRGSDVIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|238925292|ref|YP_002938809.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Eubacterium rectale ATCC 33656]
 gi|238876968|gb|ACR76675.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D   +++       +    +  F + +           D+  ++  L    G  
Sbjct: 7   LIYIVEDDESIREIESIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYD 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   R   A   +P+I ++   +    +  FD G DD + KP    E++ RV A+ RR 
Sbjct: 67  IVRKLRKRPATQDIPIIMVTAKTTEMDMIKGFDGGADDYIKKPFSIMELITRVKALLRRT 126

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  +   + +  +     V  E   L  +E  +L  LM ++G  + +  I  +++
Sbjct: 127 AKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRSVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D   E   V+ HI  LR KL +      + + R +GY I+
Sbjct: 187 DT-DFEGETRTVDMHIKTLRHKLGDYGS--RIKTVRNVGYVIE 226


>gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    ++     G +++     E   +L  +   D   ++  L   G+  +
Sbjct: 3   LLVVEDDKDLNRQIVSALERAGYAVDRAFDGEEGWFLGDTEPYDGVVLDLGL--PGKDGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +     +A   +P++ ++        +  FD+G DD V KP H  E+LAR+ A + R  
Sbjct: 61  TVLSDWRKAGRVMPVLILTARDRWGEKVKGFDAGADDYVTKPFHIEELLARLRALMRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+     G    V+G+   L   E R+L YLM ++GK V++ +I   +Y 
Sbjct: 121 GHASSVFSCGPVSFDERGGKVSVEGQPVKLTSHEYRLLGYLMHHQGKIVSRAEIVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GVDVIHTMRGLGYIL 216


>gi|149179235|ref|ZP_01857800.1| two-component response regulator [Planctomyces maris DSM 8797]
 gi|148841914|gb|EDL56312.1| two-component response regulator [Planctomyces maris DSM 8797]
          Length = 244

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 16/235 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            ++++D   +  G    F  +G ++                    +E V  +   L+  G
Sbjct: 3   LLVVEDEKALAQGLKFNFEQEGYTVLTAEDGPTALNYFQECYESDKESVDLVVLDLMLPG 62

Query: 58  EKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------- 107
               E+ + IR   +V P++ +S     +     FD G D  + KP    E         
Sbjct: 63  MSGYEIAKEIRRIDEVVPILVLSARELSEDKAYAFDCGTDQYMTKPFALPELLSRVKNLL 122

Query: 108 -ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
              + V     + +      E G + V  +  + EV GE   L   E R+L+Y + + G 
Sbjct: 123 KRKSLVKPALSQSRKLPALYEFGNVIVDFESFEIEVDGERKSLTNLELRLLKYFIEHEGM 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++QI   ++G     V    +++ + +LRK +  N      + S R  GY  
Sbjct: 183 VLTRSQILEDVWGEQSAFVTTRTIDNFVLRLRKLVEANPAEPVHIVSVRGAGYRF 237


>gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +      L  +     + +   L+  G   L
Sbjct: 3   ILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEP--ALLLLDLMLPGMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           EL + +R   + VP++ ++    +   +     G DD + KP    E    +  +    R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N  +   + +  +       G+   L  +E   LE LM+  G+  ++ +I S +
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +E    N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 181 WGA-NEDPLTNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223


>gi|22126192|ref|NP_669615.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45441652|ref|NP_993191.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807379|ref|YP_651295.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|108811644|ref|YP_647411.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|149366068|ref|ZP_01888103.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165926520|ref|ZP_02222352.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938800|ref|ZP_02227354.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009328|ref|ZP_02230226.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210680|ref|ZP_02236715.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401418|ref|ZP_02306915.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420362|ref|ZP_02312115.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424664|ref|ZP_02316417.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024423|ref|YP_001720928.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis YPIII]
 gi|218929111|ref|YP_002346986.1| transcriptional activator [Yersinia pestis CO92]
 gi|229894710|ref|ZP_04509890.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|229897410|ref|ZP_04512566.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229898052|ref|ZP_04513203.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901922|ref|ZP_04517043.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|270490895|ref|ZP_06207969.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294503927|ref|YP_003567989.1| transcriptional activator [Yersinia pestis Z176003]
 gi|21959158|gb|AAM85866.1|AE013833_4 putative 2-component transcriptional regulator [Yersinia pestis KIM
           10]
 gi|45436514|gb|AAS62068.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775292|gb|ABG17811.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|108779292|gb|ABG13350.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|115347722|emb|CAL20637.1| transcriptional activator [Yersinia pestis CO92]
 gi|149292481|gb|EDM42555.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165913163|gb|EDR31786.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921741|gb|EDR38938.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991883|gb|EDR44184.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207860|gb|EDR52340.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962057|gb|EDR58078.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049114|gb|EDR60522.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056546|gb|EDR66315.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750957|gb|ACA68475.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis YPIII]
 gi|229680818|gb|EEO76913.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|229689093|gb|EEO81158.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693747|gb|EEO83796.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229702183|gb|EEO90202.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|262361952|gb|ACY58673.1| transcriptional activator [Yersinia pestis D106004]
 gi|262365909|gb|ACY62466.1| transcriptional activator [Yersinia pestis D182038]
 gi|270339399|gb|EFA50176.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294354386|gb|ADE64727.1| transcriptional activator [Yersinia pestis Z176003]
 gi|320015323|gb|ADV98894.1| transcriptional activator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 230

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|323143009|ref|ZP_08077715.1| DNA-binding response regulator [Succinatimonas hippei YIT 12066]
 gi|322417203|gb|EFY07831.1| DNA-binding response regulator [Succinatimonas hippei YIT 12066]
          Length = 221

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M   ++D   +++  I      G+  EGF   +       +   D+  ++  L    G +
Sbjct: 1   MIYCVEDDTNIREIEIYTLKSLGLEAEGFEDGKAFFTALENNVPDLVILDVMLPDLDGIE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  +       +P+I  +   +    +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  ILKRLKSNHKTRDLPVIMATARGAEFEKVQALDIGADDYLAKPFSMIEMAARVKAVLRRC 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   T    ++  + R   V      L  +E  +L  L+ + G+  ++ Q+   ++
Sbjct: 121 HKDTSSVITVDKLKINEESRTISVNDIEVDLTYKEFELLLLLVKHEGRVYSREQLLDIVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G  D   E   V+ HI  LR+KL +      + + R +GY 
Sbjct: 181 GT-DYDGESRTVDVHIRTLRQKLMSMDY--IIKTVRGIGYK 218


>gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 242

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   +      L  +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 62  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R          L +RE  +L  L+ N+   V + 
Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 QLLNKIWG-PESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 228


>gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +    +           + D+  ++  L        
Sbjct: 3   ILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEKPDLVILDIML--PDISGH 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  +  ++ +P+I ++    +   L     G DD + KP +  E++ R+ AI +R+ 
Sbjct: 61  EVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKRIT 120

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +         +         + R   V G+   +  +E   L  ++ N  K   + ++
Sbjct: 121 KKDREEVHKNNEINLGAIKVLKNERKVLVDGKEVNMTYKEFNTLLLMIENHNKVFTRDEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G ++       V+  I +LRKKL        V +   +GY ++
Sbjct: 181 LEKVWG-YEYEGNSRAVDILIQRLRKKLSPYSQS--VKTIYGVGYKLE 225


>gi|228994221|ref|ZP_04154119.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228765514|gb|EEM14170.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++++         G  ++             +   D+  ++  L        
Sbjct: 4   IMIIEDDAVIREELQNFLQRYGYDVKAPIDYNNIMQYVENENADLILLDINL--PVFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            + R IR +S VP+I ++   +    L   + G DD + KP +       +  +      
Sbjct: 62  YICREIRKNSDVPIIIVTSRDNEVDELMSMNLGADDFITKPYNTEILLARITNILKRTYG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N        +         + +   L + E +IL YL+ N+G  V +  +   ++
Sbjct: 122 SSKASNMLSYMDFHLNLSNASVMYKNQAIELTKNEVKILSYLINNKGNIVKREFLMEHLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+++ +  +I++LRKKL      +P++++R LGY +
Sbjct: 182 -KSDYFVDDSTLTVNITRLRKKLEEIGIENPIETRRGLGYIM 222


>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|167773041|ref|ZP_02445094.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
 gi|167664974|gb|EDS09104.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
          Length = 235

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        + +++           + ++    +  ++          ++
Sbjct: 8   LVVDDDREIVESIAIYLSRENLTIYKAYDGLQALNIVAAHTIHLILMDIM--MPKMDGIK 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
               +R  + +P+I +S        +   + G DD + KP +  E++ARV +  RR  + 
Sbjct: 66  AMLKLRERNNIPIILVSAKGEDADKVFGLEFGADDYITKPFNPLELIARVKSQLRRYVML 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + +    +  EV GE   L   E +I E LM + G+     +I
Sbjct: 126 GTARDRGGPAETIVCGGLTLDVRQKRLEVDGEEVKLTPIEYKITELLMRHPGRVFPIDEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++     A E N V  HI ++R+K+  N      +     +GY I+ 
Sbjct: 186 YERVWNEPSFAPE-NTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKIEK 234


>gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
 gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G +G + E   + +       S       ++  L       +
Sbjct: 3   ILLVDDDVELGTMLREYLGGEGFNAELVLTGKAGIAAALSGDYTALILDIML--PDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++        R   
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++    G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 HPDVSSADDSIISHGDLTLNPSTRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALAGNKLNIETVRSIGYRI 226


>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +           L ++   DV  ++  L       ++
Sbjct: 5   LVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGL--PDLDGVD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R  + VP++ +S        +D  D+G DD V KP    E++AR+ A+ RR +  
Sbjct: 63  VIAGLRGWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRRNQAV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V        V+G+   L   E  +LE L+ + GK +++ Q+   ++G 
Sbjct: 123 DPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWGP 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             E  + N +  ++++LR+KL  +        ++  +GY  +
Sbjct: 183 GYETAQGN-LRLYVAQLRRKLEPDPSRPRYFRTEPGMGYRFE 223


>gi|330720729|gb|EGG98956.1| Functional role page for TorCAD operon transcriptional regulatory
           protein TorR [gamma proteobacterium IMCC2047]
          Length = 245

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  + ++ ++  F   G  +      +      +    D+  ++  L   GE  L
Sbjct: 8   LLVVDDEPVTRNNFVDYFEAAGFFVTDLEDGKSVSETLAGNEIDLVLLDINL--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S + +I ++        +   + G DD V KP++ RE+LARV +   R+  
Sbjct: 66  SIARELRRTSDIGIILVTGRTEDIDRVVGLEIGADDYVTKPVNPRELLARVKSTLWRIDK 125

Query: 122 SNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            ++                          +    +G    L   E +IL Y  +N G  +
Sbjct: 126 EDHANLNASPSSKGKIKVFSKWHLDLEKQQLRNKEGRPTSLTDAEFKILSYFTSNPGTVL 185

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++ + I    DE      V+  + +LRKKL         +++ R  GY  
Sbjct: 186 NRDKLINQINNAKDENFSSRTVDVLVGRLRKKLETEDSDSMIIETVRGKGYRF 238


>gi|330811233|ref|YP_004355695.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379341|gb|AEA70691.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G+ +              + + D+  ++  L   GE  L 
Sbjct: 9   LIVEDDQRLAELTREYLESNGLRVAIEGDGAVAAARIIAEQPDLVVLDLML--PGEDGLS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R H   P++ ++        +   D G DD V KP+  R +LAR+ A+ RR +  
Sbjct: 67  ICRKVRGHYDGPILMLTARTDDTDQIQGLDLGADDYVCKPVRPRLLLARIQALLRRSEPE 126

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + A+                R+  +QG    L   E  +L  L++N G+ +++ +IF+A
Sbjct: 127 PSVAQKQRRLQFGPLVVDDALREAWLQGNGIELTSAEFDLLWLLVSNAGRILSREEIFTA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + G+     ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 187 LRGIG-YDGQDRSIDVRISRIRPKIGDDPDHPRLIKTIRSKGYLF 230


>gi|323485879|ref|ZP_08091214.1| hypothetical protein HMPREF9474_02965 [Clostridium symbiosum
           WAL-14163]
 gi|323400867|gb|EGA93230.1| hypothetical protein HMPREF9474_02965 [Clostridium symbiosum
           WAL-14163]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+          DG  +    + +           DV+ ++  L       L
Sbjct: 15  ILIVEDDQLLNRTLAYNLTSDGYEVISVFNFDSAVRKLRENEFDVALLDINL--PDGSGL 72

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   IR   Q   +I I+        L  ++ G  D V KP     +  +VAA++  L+
Sbjct: 73  DLCEEIRNRGQHTYIIFITANDKESDMLKGYEVGGADYVTKPFSVTVLCKKVAAVFANLE 132

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   R +             +   + GE      +E R L   + N    + K QI   +
Sbjct: 133 LRTPRHDLFDDGFLKIDFSEQSASLAGESLDFTPKEYRTLFLFVKNPRIILTKRQILEKL 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +  + V+E+ + + IS++RKK+        + +   +GY 
Sbjct: 193 WDIDGDFVDEHTLTTIISRIRKKIETD-ERKYIKTAYGMGYQ 233


>gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G   +  +          S   +V  ++  L    +   E
Sbjct: 5   LIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIYEVIIVDLML--PDKNGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R   ++P+I +S        +   D G DD + KP    E+ ARV +   R +  
Sbjct: 63  IIKAVRNRFEIPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRYERL 122

Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +     +                V G    L  +E  +L +L +N      K  IF+ 
Sbjct: 123 KGKNTCSEVINHKGLEINAGSHKVFVNGREIQLTTKEYELLFFLASNPNIVFTKEHIFNT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+G  D   +   V  HI K+RKK+  +      +++    GY  +
Sbjct: 183 IWG-DDYYGDTATVPVHIQKIRKKIEKDAGNPQYIETLWGTGYRFN 227


>gi|225026830|ref|ZP_03716022.1| hypothetical protein EUBHAL_01082 [Eubacterium hallii DSM 3353]
 gi|224955837|gb|EEG37046.1| hypothetical protein EUBHAL_01082 [Eubacterium hallii DSM 3353]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   +++       + G S+E F+              D++ ++  L    G ++
Sbjct: 4   IYIVEDDTNIQEIEAIALKNSGHSVEQFDDAAHFYKKLEEKLPDLAILDLMLPDEDGYEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118
           ++  R   A  ++P+I ++   S    +   D G DD +     I       +       
Sbjct: 64  VKKLRQNPATKKLPVIMVTAKTSEIDMVRGLDIGADDYIKKPFSIIEFITRVKAILRRTL 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G I + ++     V  +   L  +E  +L+ LM N G  + + +I   ++
Sbjct: 124 EQPDDKYMTIGDIFLDNERHVVYVDNKGIELTYKEYELLKLLMHNAGIVLTREKIMERVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +   E   V+ HI  LRKKL +      + + R +GY ++
Sbjct: 184 DT-EFEGESRTVDMHIKTLRKKLGD--SSRHIKTVRNVGYVME 223


>gi|218551702|ref|YP_002385494.1| DNA-binding response regulator CreB [Escherichia fergusonii ATCC
           35469]
 gi|218359244|emb|CAQ91910.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia fergusonii ATCC 35469]
 gi|324112609|gb|EGC06586.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325495931|gb|EGC93790.1| DNA-binding response regulator CreB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I +   +G  +E F               DV+ ++  L        EL
Sbjct: 8   LVEDEQGIADTLIYMLTQEGFLVEAFERGLPALEKAHFQVPDVAILDVGL--PDISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
            R +   H  +P++ ++        L   + G DD V KP   RE+ ARV       ++ 
Sbjct: 66  CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 SAPSPVIRCGQFELNEPAAQISWCDTPLQLTRYEFLLLKTLIMSPGRVWSRQQLMDKVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 185 ADAQDTFDRTVDTHIKTLRAKLRAINPALSPINTHRGMGYSL 226


>gi|196233280|ref|ZP_03132125.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196222585|gb|EDY17110.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 244

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +   ++        ++       ++  L   G    
Sbjct: 12  LLVIDDDRKLCRLIADYLDPLGYDVATVHTGPEGVERATAEAWHAVILDLML--PGLDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           E+ + IR  S VP++ ++        +   + G DD + K    RE            V 
Sbjct: 70  EVLKRIRRTSDVPVLMLTARGDEADRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSVR 129

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K +        +R+    R   +  +   L   E  +L  L   +G+   +  +
Sbjct: 130 TPATTDKETEAEIVIDRLRINPGSRTAALGDQALLLTPVEFELLLSLARAKGRVKTRDHL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I    +  V +  ++ HIS LRKKL +       + + R  GY +
Sbjct: 190 LEEIR-EREYEVFDRSIDVHISALRKKLGDDPKTPHFIRTVRAAGYML 236


>gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
 gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
          Length = 242

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   +      L  +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 62  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R          L +RE  +L  L+ N+   V + 
Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 QLLNKIWG-PESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 228


>gi|326797266|ref|YP_004315086.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326548030|gb|ADZ93250.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 298

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLE 62
           ++DD   ++    +        +    S E       +    ++  ++  L   G+    
Sbjct: 59  VVDDDNDIRSLLKSYLERHQFQVLTAESGEAFLEDFHADLNVELVILDVML--PGQDGFA 116

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+VP+I ++        +   + G DD + KP + RE+LAR+ AI RR++ +
Sbjct: 117 VCRALRTQSEVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAILRRIEPN 176

Query: 123 NN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               +     + +  R+   +     L   +  +L   +A+ G  +++
Sbjct: 177 DPIKEEQEKAKASRYYQFAQFTLDTLSRELHHEDSKEALTGADFNLLMLFLASPGAVLSR 236

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             I     G  D A  +  ++ H+S+LR++L  +      + + R  GY +
Sbjct: 237 DYIAENTRGR-DSAPLDRFIDVHVSRLRQRLKEDARHPQLIKTVRGEGYIM 286


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +           +    R D   ++  L       L 
Sbjct: 23  LVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVML--PDMDGLT 80

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117
           +  R+ R    +P++ ++   +++  +    +G DD V KP    E++AR    +     
Sbjct: 81  VLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI   +
Sbjct: 141 AAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 201 WS-YDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 241


>gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++     +   +L  +   D   ++  L    +  +
Sbjct: 3   LLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGL--PKKDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +    R A   +P++ ++        +  FD+G DD V KP H  E+LAR+ A + R  
Sbjct: 61  SVLEQWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+R+ +      V G    L   E R+L YLM + G+ V++ +I   +Y 
Sbjct: 121 GHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + N VE  + +LRKKL    G D + + R LGY 
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKL----GVDVIQTVRGLGYM 215


>gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 242

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   +      L  +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 62  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R          L +RE  +L  L+ N+   V + 
Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 QLLNKIWG-PESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 228


>gi|167750378|ref|ZP_02422505.1| hypothetical protein EUBSIR_01352 [Eubacterium siraeum DSM 15702]
 gi|167656738|gb|EDS00868.1| hypothetical protein EUBSIR_01352 [Eubacterium siraeum DSM 15702]
          Length = 232

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             + +D   +++            +E F S E           D+   +  L    G + 
Sbjct: 5   IYITEDDDSIRELVTVALSAYSYEVESFVSAEDCLAATEKQVPDIFLFDIMLPGMDGVQA 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           +++ R        P++ ++   +    +   ++G DD + KP    E+ AR       + 
Sbjct: 65  VKILRENEQTKNTPILMLTAKSAEIDKVFGLENGADDYLTKPFGIMELAARIKALLRRSG 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++++   G I V +  R+    G    L  +E  +L YL+ NR + V++ ++ +
Sbjct: 125 RSTSDSASDKITAGGITVNTSLREVSRDGRPIELTLKEYELLLYLLKNRARVVSREELLT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G+ D   E   ++ HI  LRKKL  +      + + R +GY  
Sbjct: 185 KVWGI-DFVGETRTLDMHIGTLRKKLSDDAENAHLIKTVRGVGYRF 229


>gi|33603516|ref|NP_891076.1| response regulatory protein [Bordetella bronchiseptica RB50]
 gi|33577640|emb|CAE34905.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 223

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G S++   +           R DV  ++  L   G+   
Sbjct: 3   ILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVML--PGKDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++   +R  S VP+I ++    +   +     G DD + KP    E++ R+  +  R   
Sbjct: 61  QVIEEVRQDSDVPVIFLTARDHVADRIRGLRLGADDYLVKPFSFAELVLRIQTMLRRGAA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   +R+    R     G    L  +E  +L  L+  +G+ +++T I S ++ +
Sbjct: 121 RAAETLQVADLRLDPVRRKVTRGGASIVLTNKEFMLLHLLIRRQGEALSRTIIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+        + + R +GY++
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDAPFPLKLIQTVRGIGYAL 219


>gi|332637342|ref|ZP_08416205.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 250

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +               + +   +    +   L   G   +
Sbjct: 3   LLMVEDNTSVSEMMGMFFKKENWDASYAYDGNDAVAMFNEEPDAWDMVILDLNLPGLDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++   IR  S+  P+I ++   S    +   + G DD V KP     ++AR+ A++R   
Sbjct: 63  QVAVKIREVSKHVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRRSE 122

Query: 118 ----------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                     ++    +          +          +  L  +E  +L  L   + + 
Sbjct: 123 TAGQPASSEPQVHEDFDVQTRTFKLNSNTREAYLNGNLIQDLTPKEFDLLRVLAKKQRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  ++   +E  V++H+ KLR+K+  K+G   + +   +GY  D
Sbjct: 183 FSREQLLQLVWD-YEYFGDERTVDAHVKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|307244490|ref|ZP_07526599.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492183|gb|EFM64227.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 237

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       + G  +   N+      +    +ED+      ++       
Sbjct: 6   ILVVDDEKEIADVVEIYLLNQGYKVFKANNGLEGLKIVD--KEDIHLAIIDMMMPVMDGA 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------------HHREI 108
            +   +R     P+I +S        +   + G DD VNKP                   
Sbjct: 64  SMIMKLREKHNFPVIILSAKSEEVDQIMGLNIGADDYVNKPFKPLELLARVNSQLRRYTK 123

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              ++      K        G + +  + R   V  +   +   E +IL  LM N G+  
Sbjct: 124 YMNISDDEDGEKEDEGLYIIGGLELNENKRTVSVDDKPVKITPIEFKILNLLMKNPGRVF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  +I+  ++   + A+  + V  HI  +R+K+  +      +     +GY ID 
Sbjct: 184 SSEEIYEKVWN--ENAINTDTVMVHIRNIREKIELDSKKPKYLKVVWGVGYKIDK 236


>gi|282883260|ref|ZP_06291858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|300814336|ref|ZP_07094608.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|281296890|gb|EFA89388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|300511603|gb|EFK38831.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 226

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 12/227 (5%)

Query: 1   MFV-LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M V +++D   +           G  +  F + +      S     +  ++  L      
Sbjct: 1   MIVYVVEDDTSILKLIEYSLKSKGYEVSCFENGKDFFNQLSLKLPSLVLLDIML--PDID 58

Query: 60  VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVA 113
            +E+ + ++A+     + ++ I+        +   D G DD + KP    E    +  + 
Sbjct: 59  GIEILKRLKANPMTAGIWVMMITAKTGEYDIISALDLGADDYIKKPFSVMELLSRVGAIE 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    +   I + +  R   +  +V     +E  +L+YL+ N+   +++ ++
Sbjct: 119 RRANTTNSNEKFIKFNGIVIDNLKRLVTIDEKVVNFTFKEYELLKYLILNKDIVISREKL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + I+G +D   E   V+ HI  LR KL +K     + + R +GY +
Sbjct: 179 LTYIWG-YDYEGETRTVDMHIKLLRDKLGDK--RKYIKTIRGVGYML 222


>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  + +  D+   ++   + E   +L      D   ++      G    
Sbjct: 8   LLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + D  +A   ++G S++  +              D++ ++  L   G   L
Sbjct: 3   ILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDCDMAILDRML--PGMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            + + +RA  +  P++ ++    ++  ++   +G DD + KP H  E+          + 
Sbjct: 61  SVLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRKS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R    QG +  L  +E  ILE LM N G+ V +TQ+   ++
Sbjct: 121 ETTAEPSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTRTQLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 181 -NFNFEPNTTVVETHLSRLRAKIDKPFDTPLIHTIRNTGYSM 221


>gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii DPC 6026]
          Length = 242

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   +      L  +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 62  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R          L +RE  +L  L+ N+   V + 
Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 QLLNKIWG-PESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 228


>gi|17227568|ref|NP_484116.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135050|dbj|BAB77596.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +    +  + G  ++     E  EWL S    D+  ++  L       L
Sbjct: 3   ILLVEDDYEQLEPLQGILSEAGYIVDTAEDGEIAEWLISQKDYDLLILDWML--PTISGL 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R    +    P++ ++   +    +   D+G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  SLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVP 120

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +               E +     L  RE R+LEYLM +  + + ++QI  A++ 
Sbjct: 121 NWQGDSLRVADLQLHLAYLTVEREQIKVELSPREARLLEYLMRHPNQVLTRSQIEEALW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    E N +   + KLR +L+     + + +   +GY ++
Sbjct: 180 EWGMEPESNALTVLVRKLRHRLQQVDAAEWIRTVYGMGYRLN 221


>gi|94314591|ref|YP_587800.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93358443|gb|ABF12531.1| DNA-binding response regulator in two-component regulatory system
           with CopS [Cupriavidus metallidurans CH34]
          Length = 228

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +S    + +  +   D+  ++  L        
Sbjct: 3   LLVVEDETKTGEYLRQGLTEAGFIVDLVHSGLDGQHMALNESYDLLILDVML--PDIDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + IRA     P++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RILQNIRAAGNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R +   + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQAPVDRIQIADLVLDLARRRATRAGRRIVLTGKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDDFDDKLIQTVRGMGYVLE 222


>gi|23015379|ref|ZP_00055157.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  + +    A    +G  +      +  + + S    DV  ++  L    E  L 
Sbjct: 8   LIVEDEPVTRAKLAAYLTGEGFQVSEAADAKDMKAIVSRTVPDVVLLDINL--PDESGLI 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA S V +I ++        +   + G DD + KP + RE+  RV  + RR+  +
Sbjct: 66  LARELRAKSSVGIILVTARQDETDRIVGLEIGADDYITKPFNPRELAVRVRNLQRRVAPT 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +        G   +               L R E  +L  L  N G+ + + Q+ 
Sbjct: 126 MAAERSATGIHSFAGWRLDCDARQLASPTGEQVRLTRGEFDVLAALARNAGRALTRDQLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             +     EAV +  ++  + +LR+K+         + +   +GY +  N
Sbjct: 186 D-LTQHDGEAVIDRTIDVLVGRLRRKIEADSRHPAIILTVHGVGYRLVAN 234


>gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
 gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       + G              +    R D+  ++  L   G    
Sbjct: 4   ILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIML--PGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   I    ++P+I I+    ++  +     G DD + KP    E++ARV A+ RR   
Sbjct: 62  DIMEYI-RPMEIPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLRRYNK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R   G + V  + R  +  G    L  +E  +L   + NR   + +  ++  ++   
Sbjct: 121 TERRLSAGDVVVDVEARTVKKAGRPVELTNKEFLLLVLFLRNRNVALFRETLYEKVW-EG 179

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + + +   ++ H+ +LRKKL      +  + +   +GY ++ 
Sbjct: 180 EYSGDSRTLDLHVQRLRKKLNWENGEYPRLVAVYKVGYRLEV 221


>gi|239994169|ref|ZP_04714693.1| response regulator [Alteromonas macleodii ATCC 27126]
          Length = 231

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A ++       G +G       S+     L +  R D+  ++  L     +  
Sbjct: 5   ILLVEDDANIRQMLSIALGAEGYLCVEAASVREALSLFNQHRPDLVILDLGL--PDGEGS 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P++ +S        +D    G +D V+KP   RE++ RV  + R    
Sbjct: 63  EVLKRIRESSRLPVLVLSARDQELDKVDLLSRGANDYVSKPFGIRELVTRVKVLLRDFNP 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                               R   V+GEV  L  +E ++L+ L    G  +++ ++   I
Sbjct: 123 VVEPTSPTRQIGKIALDITERRLLVEGEVIALAPKEVQLLDELTKQPGAFISQQELLRRI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +GL     + + +   + +LRKK+ +    D +++    GY I
Sbjct: 183 WGLHHSE-DTHYIRVLVRQLRKKI-DPFEKDLIETMPKQGYRI 223


>gi|224825616|ref|ZP_03698721.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224602537|gb|EEG08715.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 16/233 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +         D G     F + +       S R  +  ++  L       
Sbjct: 18  LIFVVEDEPEISRLICRTLQDYGFDARHFATGQDLLGALRSIRPSLCLVDLGL--PDIDG 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL   +      P++ ++    +   +   ++G DD + KP   RE++AR+  I RR  
Sbjct: 76  MELVSRLWKTHDCPVLILTGRSHVADRVVGLETGADDYIVKPFEPRELIARIRVILRRYA 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER---------RILEYLMANRGKRVAKT 171
                      R                     +         R+L  L+    + + + 
Sbjct: 136 RQAEAEPVAAQRRARFVGWCFDLDCNQLTSPAGQSVELSVSEARLLTALLQRPNRILTRE 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           Q+     G  D    +  ++  +S+LR+KL         + +    GY    N
Sbjct: 196 QLA----GRSDLDPLDRSIDVRVSRLRQKLEQTPASPALIKTIYGAGYLFSAN 244


>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G S+E   + E      +    D+  ++  L        
Sbjct: 5   ILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQL--PKRNGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116
           ++ R IR      P++ ++    L   +     G DD + KP    E++AR+        
Sbjct: 63  DVCRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSP 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R        + G +RV   G +   +G+   L  RE ++L YL+ NRGK V++ ++   
Sbjct: 123 MRPPEKEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +  +     V+ HI+ LR+K+  +      V +   LGY  
Sbjct: 183 VWG-YSASTYTRTVDMHIASLRQKIEPDPKQPQWVHTVPGLGYKF 226


>gi|18309101|ref|NP_561035.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|18143776|dbj|BAB79825.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 226

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G  +E  +  E    +  S   ++  ++  L        
Sbjct: 6   IFIIEDEEKIREELTKFLEKYGYVVESSDDFENIVDISLSCNPNMILLDINL--PYYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  SQVP+I ++   S    L   + G DD V KP + +     I + +   Y 
Sbjct: 64  YICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          ++      +   + EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +E +++N +  ++++LR+K+        + +KR  GY +
Sbjct: 184 W-QSNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGYIL 225


>gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +G  +      +    L       +  ++  L       L
Sbjct: 3   ILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIML--PSLNGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R   + VP+I ++     Q  +     G DD V KP  + E+LAR+ A+ RR  
Sbjct: 61  EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120

Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                                   +  E   L  +E  ILE LM N GK +++ +I S +
Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G+ +     NVV+ +I KLRKKL     G   +++KR +GY ++
Sbjct: 181 WGM-EMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224


>gi|319781847|ref|YP_004141323.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167735|gb|ADV11273.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D     F   G+           E +    + D+  ++  L   G+  L
Sbjct: 7   ILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIEMETILRRVQVDLIVLDVML--PGKSGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +RA    P+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 65  ELCRDLRAQYSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRRNGA 124

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +  T        G   +               L   E  +L+  + +  + + + Q+
Sbjct: 125 AEPKRATTKQIYRFAGWTMDCARRRLIAPDDVRVELTMAEFNLLQTFVKSAQRVLTRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                G  D + +   ++  +S+LR+K+ +       + + R  GY  
Sbjct: 185 IELSGGDSDYSFD-RSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQF 231


>gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 222

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++  Y ++    G S+    + E       + R ++   +           
Sbjct: 4   ILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLETTRIELIITDIM--MPKMDGY 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+     P++ I+     +     F  G DD + KPI   E++ RV A+ RR K
Sbjct: 62  DLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSK 121

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ + +          D            LP++E  +L  L++   K   + Q+   I+G
Sbjct: 122 INYSSSLMIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L D   EE  ++ HI +LR +      F  + + R LGY 
Sbjct: 182 L-DTNTEERTIDVHIKRLRTRFEKTEDFQ-IMTVRGLGYK 219


>gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  ++  +          S   DV  ++  L   G+   +
Sbjct: 4   LLVEDERRLAETVRRGLTAEGFVVDVEHDGLSGFEAALSGDFDVVVLDIML--PGKHGYD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R +R      P++ +S         D FD G DD + KP     ++AR+ A + R   
Sbjct: 62  IVRDLRRREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +          G    L  RE  +LE+LM N G  V K +I  +++  
Sbjct: 122 RRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                ++N+VE +I  LR+K+    G + +D+ R +GY +
Sbjct: 182 H-YEGDDNIVEVYIGYLRRKVDTPFGRNSIDTVRGVGYRL 220


>gi|28867559|ref|NP_790178.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971031|ref|ZP_03399152.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|301385594|ref|ZP_07234012.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058822|ref|ZP_07250363.1| osmolarity response regulator [Pseudomonas syringae pv. tomato K40]
 gi|302132149|ref|ZP_07258139.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850794|gb|AAO53873.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924267|gb|EEB57841.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|330874561|gb|EGH08710.1| osmolarity response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965663|gb|EGH65923.1| osmolarity response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331014862|gb|EGH94918.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G       ++E  + L +    ++  ++  L   GE  L
Sbjct: 13  ILIVDDDPGLSSLLERFFSSKGYRARAVANVEQMDRLLAREVFNLVVLDLML--PGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +R A++QVP+I ++      + +   + G DD + KP +  E++         + 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +       +     G   +    R+ +   EV  L   E  +L+ L+ +  + + + +
Sbjct: 131 APVPGAPGSEDESVSFGDYVLSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 191 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   +++  +  E   +     + DV+ I+  L       L
Sbjct: 3   LLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGL--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L   +R      P+I ++   S Q  +   D+G DD ++KP    E++AR+ A I R  
Sbjct: 61  SLISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP  + +   + +   ++  L   E ++ EYLM + G   +K+ +   IY 
Sbjct: 121 GKASPVIQNGPFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220


>gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 10/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D A V++         G+++  + ++   E   + A  D   ++  L   GE  L L
Sbjct: 6   VIEDEATVREVLRFHLERAGLTVSAYAAVAEAEDALAGA--DALVLDWML--PGESGLGL 61

Query: 64  PRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            R +R+HS   ++P++ ++   +    ++  ++G DD + KP    E++ARV A + R  
Sbjct: 62  LRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVRALLRRTQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   GP+ +     D  + G+   L RRE  +L +L  N G+  ++T++   ++G
Sbjct: 122 PEQPQQLSNGPLHIDLAAADARLNGQRLSLTRREFDLLTFLTQNAGRVYSRTELLDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             D    E  V+ H+++LR  L +       +++ R  GY +
Sbjct: 182 A-DFLGGERTVDQHVTQLRSHLGDAPGAPTFLETVRGRGYRM 222


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++   + E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIML--PKVNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +R +     ++ ++   S++  +   D G DD + KP    E+LAR+ A + R+ 
Sbjct: 61  EVIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E   + +    +     G+   L  +E  +LEYL+ N+G  +++ +I  +++ 
Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YGYEGESNIIDVLIKNIRKKIDIGNSKPLIHTKRGLGYVL 220


>gi|66046313|ref|YP_236154.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257020|gb|AAY38116.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG ++    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + RE++ARV A+ RR   
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSLQ 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S N       +                +    V  L   E +IL  L+    K   + ++
Sbjct: 124 SGNNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVENVLVTVRSVGYRF 228


>gi|163849055|ref|YP_001637099.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527023|ref|YP_002571494.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670344|gb|ABY36710.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450902|gb|ACM55168.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  ++  +++     E    L      DV+ I+  L   G    
Sbjct: 3   ILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWML--PGRDGP 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L R    A     L+ ++    ++  +  F+SG DD + KP    E    +  +   + 
Sbjct: 61  SLCRAARAARLPTALLLLTARGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFH 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +N+    G I +               L   E R+LEYLM N G+ + + QI   +
Sbjct: 121 PNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLLEYLMRNVGQTLTRQQILDYV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  F+  V+  +V+ +IS LR+KL      DP+++ R +GY ++
Sbjct: 181 WS-FEHDVQPQMVDVYISYLRRKLNASGETDPINTIRGIGYRLE 223


>gi|56130780|ref|YP_145683.1| two component response transcription regulator [Ralstonia
           metallidurans CH34]
 gi|94152513|ref|YP_581920.1| regulator protein CopR [Cupriavidus metallidurans CH34]
 gi|10047062|emb|CAC07978.1| CopR protein [Ralstonia metallidurans CH34]
 gi|56068770|emb|CAI11332.1| two component response transcription regulator [Cupriavidus
           metallidurans CH34]
 gi|93358883|gb|ABF12970.1| CopR regulator from the two components sensor/regulator family
           involved in Cu(II)/Cu(I) resistance [Cupriavidus
           metallidurans CH34]
 gi|222875178|gb|EEF12309.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +    +    +   D+  ++  L        
Sbjct: 3   LLVVEDEVKTGEYLRQGLTEAGFVVDLVANGLDGQHFAVNETYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IRA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  HILHAIRASGNAVPVLFLTARDSVADRVRGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V           + +    R     G    L  +E  +LE     RG+ + ++ I S ++
Sbjct: 121 VQLAMDRIQVADLILDLSRRRASRGGRRITLTSKEFALLELFARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDGFEVKLIQTVRGMGYVLE 222


>gi|331086634|ref|ZP_08335711.1| hypothetical protein HMPREF0987_02014 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409800|gb|EGG89235.1| hypothetical protein HMPREF0987_02014 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G                +L+    +    R  +  ++  L        
Sbjct: 6   ILIVEDDRGLNQGITLALHAPEYRFYSAYNLKEARRIWKEERVSLIILDINL--PDGSGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S+VP+I ++        +  F  G DD + KP     + ARV  +  R+  
Sbjct: 64  TFLEEIRRESEVPVIMLTANDLEIDQVTGFSLGADDYITKPFSLMILRARVERMLARMAQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       F   +       +   L + E+++L  L+ ++G+ + + Q+   I+  
Sbjct: 124 DKGLTYEKDGYRFVFEQMYFTVEGKEVTLSKTEQKLLRILIEHQGQTLTREQLVDRIWSD 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + VEEN +   + +LRKKL      +P+ +   LGY  +
Sbjct: 184 GAQYVEENALSVTVGRLRKKLEQTGKKNPIQTVYGLGYVWE 224


>gi|257867607|ref|ZP_05647260.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873937|ref|ZP_05653590.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877695|ref|ZP_05657348.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571255|ref|ZP_08146755.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257801663|gb|EEV30593.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808101|gb|EEV36923.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811861|gb|EEV40681.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155731|gb|EGC67927.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQSKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      +V  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRGTDVIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. ORS278]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +        ++  ++           +    R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRTLIAKYLRNNACNVTTATDGREMTRIMGDHRIDLLILDVML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  TLCRKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   + T      S                      +   E  +L       G+ +++  
Sbjct: 126 AITASATEGATALSFLGWKIDFRLRELRNPEGARVAMTSAEFDLLRTFCERPGRVLSRDS 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    + E   ++  +S++R+K+  +      + + R  GY  
Sbjct: 186 LLDLTQGRSAGSFE-RSIDVLVSRIRRKIEPDPQEATMIKTVRSGGYMF 233


>gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48]
 gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +    D  +   QG +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFDKALLHTVHGVGYRL 220


>gi|15644015|ref|NP_229064.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga maritima MSB8]
 gi|4981814|gb|AAD36333.1|AE001781_4 phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga maritima MSB8]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 9   LIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFP-DGVAMDE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+   
Sbjct: 68  IPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKE 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  D
Sbjct: 128 QKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG--D 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G   + + R LGY  
Sbjct: 186 DYVSDRVVDVHISAIRSKI----GKGWIKTVRGLGYKF 219


>gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +         +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRML--PQLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
           +L   +RA     P++ +S    +   +    +G DD + KP    E  + A       +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++    R+  + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 STPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|308232561|ref|ZP_07664116.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu001]
 gi|308369225|ref|ZP_07416994.2| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu002]
 gi|308371446|ref|ZP_07667165.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu003]
 gi|308372648|ref|ZP_07667428.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu004]
 gi|308372732|ref|ZP_07667446.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu005]
 gi|308373812|ref|ZP_07667661.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu006]
 gi|308374977|ref|ZP_07667914.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu007]
 gi|308376223|ref|ZP_07668223.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu008]
 gi|308378462|ref|ZP_07668759.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu009]
 gi|308379612|ref|ZP_07669001.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu010]
 gi|308380801|ref|ZP_07669290.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu011]
 gi|308213647|gb|EFO73046.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu001]
 gi|308328380|gb|EFP17231.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu002]
 gi|308328785|gb|EFP17636.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu003]
 gi|308332627|gb|EFP21478.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu004]
 gi|308340118|gb|EFP28969.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu005]
 gi|308344106|gb|EFP32957.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu006]
 gi|308347908|gb|EFP36759.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu007]
 gi|308351776|gb|EFP40627.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu008]
 gi|308352559|gb|EFP41410.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu009]
 gi|308356510|gb|EFP45361.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu010]
 gi|308360458|gb|EFP49309.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu011]
          Length = 252

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G ++                R DV  ++  L    G  VL
Sbjct: 30  LVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDVL 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    +  +P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 90  HKLRS--ENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 147

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 148 TTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRV 207

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 208 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 248


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++D   A     G  +    +      +      D+  ++  L        
Sbjct: 9   IVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVML--PDIDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 67  TVTRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTK 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G +  L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQAEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----------NKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+            +     + +KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMI 238


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +       +  ++          +
Sbjct: 45  ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVM--MPRLDGI 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 103 RATLKIREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 162

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE               D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 163 LGNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 222

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 223 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 271


>gi|289422565|ref|ZP_06424408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289157137|gb|EFD05759.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 6/218 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLEL 63
           I+D   ++D  I      G+   GF + +           D+   +  L    G  +L+ 
Sbjct: 5   IEDDDNIRDLVIYTLESTGMEARGFENPKKFWATLEYELPDLVLCDIMLPEEDGLSILKK 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R       +P+I ++   S    +   DSG DD V KP    E+++R+ A+ RR  +  
Sbjct: 65  LRASSKTRNIPIIMLTAKGSEYDKVIGLDSGADDYVTKPFGMMELISRIKAVMRRSSIET 124

Query: 124 NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G + +  +  +  V  +   L  +E  +L  LM N    + + +I   ++G +
Sbjct: 125 DKKCLVIGDVMLDPERHEVRVDQDQVSLTLKEFDLLYLLMKNPNIVMTRDKILETVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D   E   V+ HI  LR+KL      D +++ R +GY 
Sbjct: 184 DFGGETRTVDVHIRTLRQKLGLSG--DIIETIRGVGYR 219


>gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G      NS      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKNFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP   + +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVL-VARIEAVLRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E  PL   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFISFNGIEWDKTKHTVTVYSEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
              +E   V+SHI  +R KLR K       +++   +GY 
Sbjct: 180 QTDIEYRTVDSHIRNIRDKLRKKDFPVEKYLETIYKVGYK 219


>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  +        S A  D+  ++  +       L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMI--PRIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGEQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 222


>gi|297567509|ref|YP_003686481.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851958|gb|ADH64973.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 218

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +  +++     E    L  S   D+  ++  L        
Sbjct: 3   ILLVEDDLEVGSLVKETLEAEPYAVDWAQDGEEALGLWQSFPYDLVVLDVGL--PRRDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            L   +R      P++ ++    L   +   ++G DD + KP H         A + R  
Sbjct: 61  SLLTHLRGQGGAAPVLMLTARDGLDDRVRGLEAGADDYLIKPFHLRELRARVRALLRRSR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS+NR E G + +    +    +GE   L  +E  ILE+L  +      +  +   ++ 
Sbjct: 121 GVSSNRVEVGRLSLDLRAKQAWWEGEPLELSAKEWLILEFLSLHPDTFYPRESLLEHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +++   ++ +IS+LR+KL      + ++++R LGY +
Sbjct: 180 PGEASIDPRSLDPYISRLRQKL----APEAIETRRGLGYRL 216


>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +      +    L S    D+  ++           
Sbjct: 4   ILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIEL-SKQEPDLIILDIM--MPKMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   S    +     G DD V KP   RE++AR+ A  RR K 
Sbjct: 61  EVCQAIRDDVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S              G + ++   R  ++ G+   L + E  I+E L  + G+  ++ QI
Sbjct: 121 SQYINEENKRSTLYFGKLWLYMKERAIKIDGKDIDLTKIEYGIVELLALHAGQVFSREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +  ++G  D   + + V   + K+R K        + + +   +GY  + 
Sbjct: 181 YEKVWGC-DSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229


>gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
 gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
          Length = 219

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +     +G + E         +  +S   +   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSEDWEAIVLDLGL--PKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR  +   P+I +S   +L   ++  ++G DD   KP    E++AR+ A   R  
Sbjct: 61  TVLKSIRDENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M +  K +++T++   IY 
Sbjct: 121 GNASPVIQNGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+        + + R LGY ++
Sbjct: 180 KQDFDRDSNTIEVFIGRIRKKI----APKVIKTVRGLGYQLN 217


>gi|188590423|ref|YP_001919717.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251779363|ref|ZP_04822283.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500704|gb|ACD53840.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243083678|gb|EES49568.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        + + +           + ++ +  V  ++          + 
Sbjct: 5   LVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEKIHVIVLDIM--MPKLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR    
Sbjct: 63  TCLKIRETENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  +   I       + +  +   V+GE   +   E +IL  L +N GK  +  +I+  
Sbjct: 123 LNIEDEEQILTVKDLVIDTVSKSITVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 183 VWDEP-FYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEK 228


>gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
 gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
          Length = 235

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++    +    D   L   +S        ++ R D+  ++  L     + +
Sbjct: 12  ILVIDDEAAIRRFLHSALSSDEFILHEADSGHGGLSAAAALRPDLILLDLGL--PDLEGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ R IR  SQVP+I +S        +   D+G DD + KP    E+    R +     +
Sbjct: 70  EVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S     +G + V  + R   V+G    L   E  +L  L+ +  K +  +QI   I+G
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +  +  V+   IS LRKK+  +      + ++  +GY  
Sbjct: 190 VAYQD-QPQVLRVTISNLRKKVERDPSRPRHITTEPGVGYRF 230


>gi|49081818|gb|AAT50309.1| PA2809 [synthetic construct]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 3   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ R +R      P++ ++   +++  +   + G DD + KP    E+LARV        
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +        + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLTHTVRGMGYVLEE 223


>gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         DDG ++    +        +      +AI+  L        
Sbjct: 21  ILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVML--PEMTGF 78

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +R      P++ ++   +++  +   DSG DD + KP    E  AR+ A + R  
Sbjct: 79  EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + + +        G   P+  +E  +L  L  + G+ + ++ I S ++G
Sbjct: 139 AAGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWG 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                ++ NVV+ ++S LR+KL        + + R +GY++
Sbjct: 199 TTAH-IDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYAL 238


>gi|223933128|ref|ZP_03625120.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|302024265|ref|ZP_07249476.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833221|ref|YP_004402046.1| winged helix family two component transcriptional regulator
           [Streptococcus suis ST3]
 gi|223898189|gb|EEF64558.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|329307444|gb|AEB81860.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis ST3]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +         + G  ++     +         +  +  ++  L        
Sbjct: 4   ILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGL--PFFNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
              + IR  S+VP++ +S +      +   + G DD V KP         +  +      
Sbjct: 62  YWCQEIRKTSRVPIMFLSSHDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYD 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      I +            V  L R E +IL  L  +  + V++ ++   ++
Sbjct: 122 FVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQILRVLFEHGKEVVSREELMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              D  V++N +  +I++LRKKL      D + +K+ +GY + W
Sbjct: 182 -NSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVW 224


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 8/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +        G +G  +E     +           D+  ++  L   G     
Sbjct: 1   MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVML--PGLDGFS 58

Query: 63  LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   IR +  + +P+I ++    ++  +    SG DD + KP    E+         R K
Sbjct: 59  VLEEIREYISTDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEEL-LARIEAVLRRK 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R     I +    R+  + GE   L + E  +L  L++N G  ++K ++   ++G 
Sbjct: 118 GKVERISYFEITLDMQSREAFLNGEPLQLSKTEFDLLAVLLSNAGIVMSKERLLEKVWGS 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            D     NVVE +I+ LRKKL      + + + R  GY 
Sbjct: 178 EDW-GNPNVVEVYINYLRKKLGKTG--ERIKTVRGSGYV 213


>gi|290475831|ref|YP_003468723.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175156|emb|CBJ81959.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A+++        + G  ++   + +  ++       D++ ++  L   GE  L
Sbjct: 3   ILIIEDEAILRHHLTVQLRELGHQVDAAENTKEADYYLKENHPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R+     P++ ++ + S Q  +   ++G DD V KP    EI AR+ A+ RR  
Sbjct: 61  SMIRRWRSDQVNLPILILTVHDSWQEKVTVLNAGADDYVTKPFRLEEINARIQALMRRHS 120

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++        +    ++  V      L   E  I+E LM N GK V+K  +   +Y 
Sbjct: 121 GLASQLVELSPFLIDLSRKEFSVNKNSIKLTAFEYTIIETLMRNNGKVVSKESLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKK+ N+   + + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKISNEWSDEVIVTVRGQGYRFDV 222


>gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       N+V+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNIVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 257

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSIQTFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLEK 220


>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +          +G S  G             +   ++ ++          L
Sbjct: 8   ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWN--MPIITGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P+I I+    +   +   ++G DD ++KP + RE+LARV A+ RR  
Sbjct: 66  DVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRST 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +           +        G     L  RE  +LE  + N  + +++TQ+   ++G
Sbjct: 126 AISPDQLNFGDLHLNGAERRCSYGGQELTLTVREFDLLECFLRNPRQALSRTQLIQNVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   ++NVV+ ++  LR+KL        + + R +G+++
Sbjct: 186 E-DYFGDDNVVDVYVRYLRRKLEEVKPDRIIQTIRGIGFAL 225


>gi|108800890|ref|YP_641087.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870030|ref|YP_939982.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436516|ref|YP_001072207.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771309|gb|ABG10031.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696119|gb|ABL93192.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126236316|gb|ABN99716.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 254

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD  ++ +        +G  +           L      DV  ++  L    G  VL
Sbjct: 32  LVVDDEPVLAELVSMALRYEGWDIATAGDGATAIALARENPPDVVVLDVMLPDMSGLDVL 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +PL+ ++   S++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 92  AKLRE--QIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTGV 149

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S +      +       D  +    G+   L   E  +L ++M N  + ++K QI   ++
Sbjct: 150 SESGGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNSKRVLSKAQILDRVW 209

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     N+VE ++S LRKK+ +      + + R  GY +
Sbjct: 210 S-YDFGGRSNIVELYVSYLRKKI-DSGREPMIHTLRGAGYVL 249


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++IDD   + +            +                + D+  ++  L    G +VL
Sbjct: 6   LVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNISGIEVL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              R  +    +P+I ++        ++  + G DD + KP   +E+LAR++++ RR   
Sbjct: 66  RKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLRRYNL 125

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 NN   TG +++     +     E   L  +E  +L+ L+ N+GK +++  +   
Sbjct: 126 TSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNYLLDK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+G ++   E   V+ HI  LRKK+ +       +++ R +GY ID
Sbjct: 186 IWG-YEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGYKID 230


>gi|319405330|emb|CBI78948.1| two-component response regulator [Bartonella sp. AR 15-3]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  +   DV  I+  L       L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYALAETVNYDVMVIDRML--PYRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIVTELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       + + +   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRRDKNIMLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|300933852|ref|ZP_07149108.1| two-component system response regulator KdpE [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  +      G  ++   +      L S        ++  L       L
Sbjct: 6   ILMVEDDAALANAVLVTLRARGYDVKVATTASAAIKLASEWHPQALLLDLGL--PDMSGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           ++ R +R+ S VP++ +S        ++  D G DD V KP              R A  
Sbjct: 64  DVLRALRSWSDVPVLVVSARHDEAGKINALDEGADDYVTKPFSVGELLARLRAALRRAPN 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    +   G ++     +   V G    L  RE  I+E+++ ++G+ V K ++  
Sbjct: 124 EEAPETPVVKTSDGRVQFDLPEKRVTVDGHEVHLTPREWGIVEHMIRHQGRLVTKVELLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++G      E N +  ++S+LR KL  +        ++  +GY +
Sbjct: 184 SVWGAS-YKKETNYLRVYMSQLRSKLEQDPANPQYFTTELGVGYRL 228


>gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 219

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +      G   E         +  +S   DV  ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIVETLEKTGWVPELSQDGIDALYRATSEEWDVIVLDLGL--PKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A   R  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+        + + R LGY ++
Sbjct: 180 KQDFDRDSNTIEVFIGRIRKKI----APKVIKTVRGLGYQLN 217


>gi|209516256|ref|ZP_03265114.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
 gi|209503367|gb|EEA03365.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E   +L +    DV  ++  L        
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMYLATEFDYDVIVLDVML--PKRDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A   R   
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis
           638R]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E    + + +   +  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
             L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++AR         
Sbjct: 65  ANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTA 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S
Sbjct: 125 TSDTEKAPEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDILS 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 RIWS-DEVYVLDRTIDVNITRLRKKIGTYG--KRIVTRLGYGYCFE 227


>gi|223932940|ref|ZP_03624935.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|253752347|ref|YP_003025488.1| response regulator protein [Streptococcus suis SC84]
 gi|253754173|ref|YP_003027314.1| response regulator protein [Streptococcus suis P1/7]
 gi|253756107|ref|YP_003029247.1| response regulator protein [Streptococcus suis BM407]
 gi|302024297|ref|ZP_07249508.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833284|ref|YP_004402109.1| winged helix family two component transcriptional regulator
           [Streptococcus suis ST3]
 gi|56684580|gb|AAW21991.1| two-component regulator [Streptococcus suis]
 gi|223898386|gb|EEF64752.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|251816636|emb|CAZ52276.1| response regulator protein [Streptococcus suis SC84]
 gi|251818571|emb|CAZ56404.1| response regulator protein [Streptococcus suis BM407]
 gi|251820419|emb|CAR47066.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558947|gb|ADE31948.1| two-component regulator [Streptococcus suis GZ1]
 gi|319758749|gb|ADV70691.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis JS14]
 gi|329307507|gb|AEB81923.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis ST3]
          Length = 216

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         + G  +E     +         + D+  ++  +       L
Sbjct: 4   ILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMI--PSMTGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQ+P++ ++      T L  F+  + D V KP     +  +      R K 
Sbjct: 62  EVLKEIRKTSQIPILMLTAMGDEYTQLISFNQIISDYVVKPFSPTIL-VKRIENILRGKG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E G I +        ++ E   L ++E  +L YL   RGK V++  +   I+G  
Sbjct: 121 ETDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLAKRRGKIVSRDNLMMGIWGYT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++  V+++HI  +RKKL +      + +    GY I+
Sbjct: 181 E--LDSRVLDNHIKNIRKKLPSLP----LKTIVGRGYQIE 214


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    L    G S++  +  E    +  S + D+  ++  L       L
Sbjct: 3   ILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRML--SKMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ +   P++ ++   +L   +D  D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRRPG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  + +         +         G+   L  +E ++L YLM +  + +   QI+ A
Sbjct: 121 SPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIYDA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G    A   N + + +  LRKK+        + +    GY +
Sbjct: 181 VWGEG-SAPSSNTLAAQMRLLRKKIEQPGQPVLIHTVYGKGYRL 223


>gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +   +      +         + D+  ++  L   G   L
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLML--PGIDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R  SQ  P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 VSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V   R ++  I     R+    R    +GE   L   E  +L  L  N G+ +++ +I  
Sbjct: 122 VHEPRLDSEQILVGGLRIDLAERLVSWRGEEVELSSGEYNLLVVLARNAGEVLSRDRILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +       + +    GY    ++W
Sbjct: 182 QLRGI-EFNGTDRSVDVAISKLRRKFDDSAGEARKIKTVWGKGYLFSRVEW 231


>gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGL--PQLDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   +P++ ++        +   D+G DD V KP H  E+LARV A I R  
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSELVCGPVRLDTKSSKATVNGTTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GVDLIETIRGLGYRM 216


>gi|116751033|ref|YP_847720.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700097|gb|ABK19285.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +  G + +F   G   EG         L      D+  ++  L   G   L 
Sbjct: 13  LVVEDDPAILRGLLDVFVFHGYRAEGAEDGVEGLRLCLEGSHDLILLDVML--PGVDGLT 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           + R +R A  +  +I ++        L+ F +G DD V+KP   RE+L RV A       
Sbjct: 71  ICREVRKAKPRQAIIMLTAKGREGDILEGFKAGADDYVSKPFSLRELLMRVEAVLRRAGK 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + +     I           +     L RRE  I+ YL  +R + V+K ++   ++ 
Sbjct: 131 IAGDEQVMVSGILFDGGNLLASFRERTAELTRREMDIVAYLHRHRDRVVSKKELLKEVWN 190

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             D  VE   V+ H+ KLRKK+         + + R  GY ++
Sbjct: 191 YADPDVETRTVDIHMLKLRKKICALNPEIALLPTVRGEGYRLE 233


>gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +    +  E    +   L       L
Sbjct: 3   ILIAEDDQVLADGLLRALRSAGAAVDHVASGTEADAALMTNTE-FDLLILDLGLPKMHGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +RA  S +P++ ++   S+   +   D G DD + KP   +E+ ARV A I R +
Sbjct: 62  EVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRGM 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
             +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 122 GATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLCE 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E +I +LRKK+    G   + + R LGY ++ 
Sbjct: 182 WG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLEK 221


>gi|254381155|ref|ZP_04996520.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340065|gb|EDX21031.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 254

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V D    +   +G  +                R D   ++  L       L
Sbjct: 30  ILVVDDEPDVTDVLAGVMNGEGWQVRTAGDGATALATARDFRPDAVVLDWML--PDLDGL 87

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R + R   +V ++ ++   +++  +    +G DD V KP    E+LAR+  + RR  
Sbjct: 88  QVLRGLRREMPKVCVLFLTARDAVEDRIAGITAGGDDYVTKPYSLEEVLARLRGLLRRSG 147

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++          G + +  + R+    G +  L R E  +L +LM N  + ++K QI   
Sbjct: 148 MTAEPGANLLTVGDLTMDEEAREVRRGGAIVDLSRTEFELLRFLMRNPRRVLSKDQILDR 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     ++VE +IS LRKK+ +      + + R +GY +
Sbjct: 208 VW-AYDFGGRAHIVELYISYLRKKI-DAGRTPMIHTVRGVGYVL 249


>gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 210

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 78/201 (38%), Gaps = 5/201 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +++        +G  ++  N              D+  ++           
Sbjct: 5   ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIM--MPNLDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119
            + ++IR  S VP+I ++        L  FD   DD + KP                   
Sbjct: 63  GVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++       +++  +    E+ GE   L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 123 TINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKK 200
            +D   +  +V++HI  +RKK
Sbjct: 183 -YDYYGDTRIVDAHIKNIRKK 202


>gi|330954699|gb|EGH54959.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG ++    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + RE++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + N       +                +    +  L   E +IL  L+    K   + ++
Sbjct: 124 NGNNERHLRYQNLLVELDAVTAIIEGHDGTDTLLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVDNVLVTVRSVGYRF 228


>gi|302189715|ref|ZP_07266388.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG ++    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + RE++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + N       +          +     +    V  L   E +IL  L+    K   + ++
Sbjct: 124 NGNNERHLRYQNLLVDLDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVENVLVTVRSVGYRF 228


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +       +  ++          +
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVM--MPRLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 66  RATLKIREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 125

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE               D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 126 LGNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 186 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|229087002|ref|ZP_04219157.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228696312|gb|EEL49142.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 235

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTASNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L   ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYALVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++      V++N +  ++ ++RKKL      + + +KR  GY++
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYAL 225


>gi|89052583|ref|YP_508034.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862132|gb|ABD53009.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G    G         L +    D+  ++      GE  L
Sbjct: 11  LLIVDDDERIRSLLQKFLMRNGFMASGARDAGQARVLLAGLSFDMIVLDVM--MPGEDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
            L R IRA S  P++ ++        ++  ++G DD ++KP            + R    
Sbjct: 69  SLCRDIRATSSTPILLLTANGEPDDRIEGLEAGADDYLSKPFEPKELLLRINAILRRMPA 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+R   +  +     +   L   E  ++        + +++ ++ S
Sbjct: 129 PTEDATVPQVIHLGPVRYDIERGEMWQGQDPVRLTATEAALMRIFAHQPAEALSRGELVS 188

Query: 176 AIYGL--FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E V+E  V+  I++LR+K+  N      + + R  GY +
Sbjct: 189 LLNRDKVGGEPVQERAVDVQITRLRRKIEMNPKQPRYLQTVRGAGYML 236


>gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +    D  +   +G +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRILQVADLVYDLDTLEVTREGRMLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +    G   + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFGKPLLQTVHGVGYRL 220


>gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076615|gb|ADJ66014.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 72/225 (32%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD    +    A    +   +   +             +++S +   ++       
Sbjct: 5   ILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPDTDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDF-----FDSGVDDVVNKPIHHREILARVAAIY 116
            L + +R  S VP+I ++        +        D        + +  R          
Sbjct: 65  ALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGI 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G      +    + QG++ PL   + ++L+Y + + G  + +  +   
Sbjct: 125 DSSAAPRYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEE 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             G  D    +  ++  ISKLR +L +       + + R  GY  
Sbjct: 185 TRGR-DAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228


>gi|268609986|ref|ZP_06143713.1| regulatory protein VanR [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++       ++G S    ++      +   ++  V  I   ++      +
Sbjct: 6   ILVVDDDSDIRNLLGIYLENEGYSFIKCDNALKALDVLEKSK--VVLILLDVMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP------IHHREILARVAAI 115
                 R  +  P+I IS        ++   SG DD V  P      +   +   R    
Sbjct: 64  SDCMKNREKTNAPIIFISAKAEDMDIVNGLMSGGDDYVTNPFDPVLLMTRVKAQIRRFRQ 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           Y       +  +   I + ++     V      L  +E  ILE L+ NR   ++  QI+ 
Sbjct: 124 YNAPADKPDTLQYDDITLNTETHRVWVSDTEIQLTFKEYEILELLLRNRNNVLSMKQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   +    EN V  HI+ LRKKL  +K G + + +    GY I
Sbjct: 184 KVWHE-EFIGAENTVMMHIANLRKKLDFDKSGRNIIKTIWGRGYKI 228


>gi|114777111|ref|ZP_01452131.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114552632|gb|EAU55092.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 254

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG-EKV 60
            ++I+D   +           G +       +         +  +  ++  L G G  +V
Sbjct: 28  ILIIEDEDAIARLMGLHLRAAGYTTYRCADGDDALSCLRDGQWRLVVLDRMLPGTGGMQV 87

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   +     + +P++ ++        +   + G DD + KP    E++AR  A+ RR +
Sbjct: 88  LRWLKASEKRAHIPVLMVTALAMASERVQGLNDGADDYLPKPFEPDELVARARALLRRSR 147

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +  A    I++  D            L   E ++L+ LM   GK  ++  +   ++G
Sbjct: 148 IVESGVAVEQGIQLDPDVPVVFEGNVRVDLRPMEYKLLQMLMKKPGKTRSRDYLLDHVWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE   V+  + +LRK L+     + V++ R +GY  
Sbjct: 208 N-DVYVEPRTVDVTVKRLRKALKELGRKNCVETVRGMGYRF 247


>gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
 gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G      ++G + +   +    + L  S++  +  ++  L    +   
Sbjct: 3   LLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGL--PDQDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R      P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   +Q +   +  +E  IL  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++ +  N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 180 TWNDDLGSNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
 gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD   +      +   +G  +      E      +    D+  ++            + 
Sbjct: 2   VDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVM--MPKLNGFAML 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
             +R     P++ ++     Q  ++  ++G DD + KP   RE+LARV AI RR + +  
Sbjct: 60  TKLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPP 119

Query: 125 RA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            I +    +      ++  L   E  +LE L+ N G+ V+K+ +   +
Sbjct: 120 QRGNSSDEVHFMDIVLQPGLQQARCGEQLLELTATEFGLLECLLRNPGQIVSKSHLSEQV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            G   E  +   ++ H+S LRKKL ++  G     + R  GY
Sbjct: 180 LGKKLEPFD-RAIDMHLSNLRKKLPDRTDGQPRFKTVRGRGY 220


>gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++     +       S   D+  ++  L   G   +
Sbjct: 16  LLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNL--PGMDGM 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL + +R ++    ++ +S    +   ++  D+G +D + KP H +E+ AR+ +   R+ 
Sbjct: 74  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 133

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I+  +  R    + E   L R+E  ILEYL+ N G+ V++ ++   ++ 
Sbjct: 134 VQNDICLKCGEIKFDTIKRKAYAKEEPVLLTRKENGILEYLLINIGRPVSQEELIEHVWD 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     +  H+S LRKKL+ KLG+DP+ +K   GY I
Sbjct: 194 ATADSFSG-AIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 233


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 5   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 63  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 123 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 183 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 224


>gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 248

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L       L
Sbjct: 26  ILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRML--PRRDGL 83

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R  +   P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 204 D-YHFDPQTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +    + G S+    +      L S     +  ++  L       +
Sbjct: 3   ILLIEDNHRISEFVVKGLEETGYSVVLAENGVDARSLISEKEWSLILLDIML--PDIDGI 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL +         P++ IS     +  +   D G DD + KP   RE++A + A+ RR  
Sbjct: 61  ELLQYTRYKKINTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAG 120

Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  + A             D    E  GE   L  +E ++L+ LM N+ K +++ Q+   
Sbjct: 121 LKYDVASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDT 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ +     NVV+ +IS LR K+        + + +  GY I+
Sbjct: 181 VWGV-NYDTNTNVVDVYISYLRNKIDTDGHVKLIKTVKGRGYMIE 224


>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +           +  S   DV  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESE--DVHLLVLDVMMPRLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR ++ +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIRENNSIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 121

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S    E G + +  D ++  V GEV  L   E  IL  LM N+G+  +  QI
Sbjct: 122 LGGSVKEKSERVYEVGGLAINDDLKEVTVDGEVVKLTPIEYNILLLLMKNQGRVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + +I+   D    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    + G  ++     E   +L  +   D   ++  L       L
Sbjct: 3   LLIVEDDKDLNRQLVTALEEAGYVVDSAFDGEEGHFLGDTEPYDAVVLDLGL--PTLDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +  R    +P++ ++        +   D+G DD V KP H  E+LARV A + R  
Sbjct: 61  SVLEKWRRDGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G +R+        V G    L   E R+L YL+ ++GK +++T++   +Y 
Sbjct: 121 GHASNELTCGNVRLDLRAGRVTVDGSPIKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKK+    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKI----GAEMIETIRGLGYRL 216


>gi|218534663|ref|YP_002424425.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
 gi|218473132|emb|CAQ76560.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++                 D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   +RA  Q P++ +S   S+   +     G DD + KP    E    +  +      
Sbjct: 61  RVLEGVRAAKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   I+
Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKVDAPFDIKLLHTVRGMGYVLEV 223


>gi|170739183|ref|YP_001767838.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193457|gb|ACA15404.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 241

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          + + +         + L + +R D+  ++  L   GE  L
Sbjct: 9   ILLVEDDREISQLVARYLRGNDLRVSLAGDAREMDRLLADSRVDLIVLDLML--PGEDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RAHS VP++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 67  SVCRRLRAHSSVPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRGGA 126

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        +R  S                 G    L   E  +L  +    G+ +++ Q
Sbjct: 127 NGGAVRDEEVRRLSFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRDQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G       E  ++  +S++R+K+  +    + + + R  GY  
Sbjct: 187 LLDLTQGRA-PGPFERSIDVLVSRIRQKIERDPRNPEMIKTIRSGGYVF 234


>gi|162421230|ref|YP_001606897.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
 gi|162354045|gb|ABX87993.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPR 120

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|327394902|dbj|BAK12324.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D  ++     G+        E    L  + + D+  ++  L       
Sbjct: 6   LILVAEDDFEISDILMSYIKRAGMKAVHAAEGESALALIKTLQPDLVLLDIQLPL--IDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
             +   +R  S  P+I ++        L     G DD + KP +  E++        R  
Sbjct: 64  WNVLSTLRKESNTPVIMVTALDQDIDKLMGLRLGADDYIVKPFNPSEVVARIEAVLRRAK 123

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +   R  T     F        Q     L   E ++L ++     K  ++ ++
Sbjct: 124 NQAVPQSLIRTRFMTIYTDEFCVEIHSGGQTFTPVLTTTEFKLLTHMAKYPRKVFSREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A   L +    +  V+SH+SKLRKK          +S R +GY +
Sbjct: 184 LNAC--LPESDTLDRTVDSHMSKLRKKFEGCGLNGVPESIRGIGYRL 228


>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +           L  +   ++  ++      G   +
Sbjct: 4   ILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVM--MPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
             N       RV+  G                   L   E  IL  L+ N GK  +  QI
Sbjct: 122 LGNMNTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YEEIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEK 230


>gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 251

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++ +  +  D G +            +      D+   +           
Sbjct: 30  ILVVEDNADMRELFCTVLADHGYNSIPAADGAEALDIMDRQYIDLIVADIM--MPNMDGY 87

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119
           +L + +R A+  +P++ ++           F +G DD + KP++  E++    A + R  
Sbjct: 88  QLTKALRDANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALLRRAR 147

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  +   G   +  D     + G+   LP++E  +L  L++   K   + Q+   I+G
Sbjct: 148 ISSEKKITIGSTVLDYDALTVTIHGKETLLPQKEFYLLYKLLSYPNKIFTRQQLMDEIWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +F    +E  V +HI++LR K  +   F+ + + R LGY 
Sbjct: 208 MF-SETDERTVNTHINRLRDKFSDCSDFE-IVTVRGLGYK 245


>gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVML--PDMDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 68  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +      +       D  +    G V  L   E ++L YLM N  + ++K+QI   +
Sbjct: 128 PLLDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 188 W-EYNFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 230


>gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 231

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +           L  +   ++  I+      G   +
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSVNLMIIDVM--MPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
             N        +F  G                   L   E  IL  L+ N GK  +  QI
Sbjct: 122 LGNMNTQAGGHIFKCGGLLINDENKEVTVDGELIKLTPIEYNILLLLVRNAGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YEEIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEK 230


>gi|167996917|gb|ACA14308.1| two component heavy metal transcriptional regulator [uncultured
           bacterium]
          Length = 253

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  ++   +         +    V  ++  L        E
Sbjct: 4   LLVEDEIKLGEYIKKGLTEAGFIVDHHTTGLDGYHALMTDEFSVVLMDVML--PDVSGFE 61

Query: 63  LPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           L R    A    P++ ++    L   +   + G DD + KP    E++ R+        +
Sbjct: 62  LVRNYRAAGKHTPVLFLTAKDDLSDKIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRANQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +++    R          L  +E  +L++L+  +G+ + ++ I S ++
Sbjct: 122 SDYKSTIMHIADLKMDIAKRTVHRGDTAIKLTAKEFSLLQFLLERQGEVLPRSVIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ ++     + + R +GY +D
Sbjct: 182 DM-NFDSDTNVIDVAIRRLRLKIDDEFAIKLIHTVRGMGYRLD 223


>gi|88703724|ref|ZP_01101440.1| heavy metal response regulator [Congregibacter litoralis KT71]
 gi|88702438|gb|EAQ99541.1| heavy metal response regulator [Congregibacter litoralis KT71]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  +    +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEIKTGDYVQQGLTEAGFLVTLARNGLDGHHLAMTETFDLLVLDVML--PDVDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +R   +  P++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + V  ++ +   + +          G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 VPVMTDQIKVADLTLDLPRHRATRAGRKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFEPKLIHTVRGMGYKLEV 223


>gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +        ++  ++           +    R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRTLIAKYLRNNSCNVTTATDGREMTRIMGDHRIDLLILDVML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  TLCRKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   + T      S                      +   E  +L       G+ +++  
Sbjct: 126 AMTASATEGATALSFLGWRIDFRLRELRNPEGARVAMTSAEFDLLRTFCERPGRVLSRDS 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G    + E   ++  +S++R+K+  +      + + R  GY  
Sbjct: 186 LLDLTQGRSAGSFE-RSIDVLVSRIRRKIEPDPQEATMIKTVRSGGYMF 233


>gi|295108584|emb|CBL22537.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGGIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           L  + V+EN +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYI--WN 224


>gi|229032091|ref|ZP_04188072.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228729231|gb|EEL80227.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 235

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKINPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASVAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIQNAIVTKRGYGYALLTEW 229


>gi|55979989|ref|YP_143286.1| response regulator [Thermus thermophilus HB8]
 gi|55771402|dbj|BAD69843.1| response regulator [Thermus thermophilus HB8]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + V +        +G ++                  DV  ++  L     + LE
Sbjct: 5   LLVEDDSQVGELVRRFLEREGFAVAWVRFGREALERVGEEGADVVVLDRGL--PDMEGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+   +  + +    + + +         D           L        R    
Sbjct: 63  VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R   GP+ V   GR   ++GE   L   E  +L       G+   + ++   ++G  +
Sbjct: 123 EGRRRFGPLEVDLGGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWG-PE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               E VV++++  LRKKLR+       +++   LGY  
Sbjct: 182 FEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGYRF 220


>gi|150017333|ref|YP_001309587.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903798|gb|ABR34631.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++ +  +   +G    G         +      D+   +           
Sbjct: 4   ILIVEDDKELRELFSTVLLKNGYKTTGAKDGIEALNVLDKEYIDLIISDIM--MPNMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR A   +P++ I+     Q     F  G+DD + KPI   E++ RV A+ RR +
Sbjct: 62  ELIKSIRDAQFNLPILMITAKERFQDKQRGFLLGIDDYMVKPIDVNEMVLRVGALLRRAQ 121

Query: 121 VSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + R ++    +   D       GE   LP++E  IL  L++   +   + ++    +G
Sbjct: 122 IISERKQSVGDTMLEYDSLSVYQNGEATVLPQKEFYILYKLISYPNRIFTRQELMDEFWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           L D   +   V+ HI++LR + +N + FD + + R LGY +  N
Sbjct: 182 L-DSETDIRTVDVHINRLRDRFKNNIDFD-ILTVRGLGYKVVKN 223


>gi|313497538|gb|ADR58904.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +               ++ D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            + R +R+H Q P++ ++        +   D G DD V KP+  R     +  +      
Sbjct: 66  SICRRVRSHYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSET 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G +R+ +  R+  +  ++  L   E  +L  L +N G+ + + QIF+A+ 
Sbjct: 126 VDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+     ++  ++  ISK+R K+ +       + + R  GY  
Sbjct: 186 GVG-YDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLF 227


>gi|228983785|ref|ZP_04143982.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775980|gb|EEM24349.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEAIKLIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|226308004|ref|YP_002767964.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187121|dbj|BAH35225.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G  +E                 D+  ++      G   LE
Sbjct: 7   LVVDDEVSICESIAARLRAEGYDVELAFDGPSAVTRCEQMDADLVVLDVM--MPGFDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   +
Sbjct: 65  VCRRIQAVRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADRA 124

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + A         G + +    R      +   L R E  ++ YL       + +  +  
Sbjct: 125 EHAARPVADLLEFGDVVIDLTERRVRRDTQEVHLTRTEFDLIAYLAERPRAAIPRESLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I+G  + A     V+SH+  LR+KL    G   + +   +GY+ D 
Sbjct: 185 EIWGWGEGAG-SRTVDSHVKALRRKL----GPSVIRTVHGVGYAWDV 226


>gi|190573534|ref|YP_001971379.1| putative two-component system, response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190011456|emb|CAQ45074.1| putative two-component system, response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G  G  +           L      D+  ++  L    E  L
Sbjct: 10  LLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNL--PREDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S  P+I ++        +   + G DD + KP   RE+LAR+  + RR + 
Sbjct: 68  TLCRDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRRTEA 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE---------RRILEYLMANRGKRVAKTQ 172
                E   +R     R          +   +          R+L   +A+  K +++ Q
Sbjct: 128 LPANLEPLAVRRARFSRWVFDLEHRHLVDPDDRVVVLSGAEFRLLRVFIAHANKVLSREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  A+    +   ++  ++  +S+LR KL +  G D  + + R  GY +
Sbjct: 188 LV-ALSSGRNYEAQDRAIDLQVSRLRNKLGDDGGPDGLIKTVRNEGYVL 235


>gi|158336600|ref|YP_001517774.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306841|gb|ABW28458.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              ++     E       +A  ++  ++  L       +
Sbjct: 3   ILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLML--PRLDGI 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +R       +  ++   +L   +   D+G DD V KP    E+ AR+ A   R  
Sbjct: 61  SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +  + G +++            +  L  +E  +LE+L+ + G+   +  +   ++ 
Sbjct: 121 QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             D A  E  V++HIS LR KL+   G D  +++   +GY ++
Sbjct: 180 ELDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLN 222


>gi|66043528|ref|YP_233369.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|302188958|ref|ZP_07265631.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           642]
 gi|63254235|gb|AAY35331.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330901510|gb|EGH32929.1| osmolarity response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330943280|gb|EGH45670.1| osmolarity response regulator [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330972160|gb|EGH72226.1| osmolarity response regulator [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330977296|gb|EGH77250.1| osmolarity response regulator [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G       ++E  + L +    ++  ++  L   GE  L
Sbjct: 13  ILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLML--PGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +R A++QVP+I ++      + +   + G DD + KP +  E++         + 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +       +     G   +    R+ +   EV  L   E  +L+ L+ +  + + + +
Sbjct: 131 APVPGAPGSEDESVSFGDYVLSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 191 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|289642575|ref|ZP_06474717.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289507570|gb|EFD28527.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 241

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +          G  +      E    L  +   D+  ++           
Sbjct: 15  LLVAEDDEASRVALARSLERFGYRVLEAADGETALKLFQTTEVDLVVLDV--AMPRMDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112
            +   +R  S+VP+I ++        +   + G DD V KP            R     V
Sbjct: 73  AVLSRLRQTSEVPVIMLTGRAEEVDRVVGLELGADDYVVKPYSLRELVARVRARLRRRPV 132

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +R    N+    G + +    R+  V GE   L  RE  +L +L ++  +  ++ +
Sbjct: 133 EPPPQRTSDGNDPLVYGDVSIDLRAREVAVAGERVDLTAREYELLAFLASHPRRVFSREE 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   ++G      +   V  H+ ++R K+         V + R +GY  D
Sbjct: 193 LLEQVWGTR--FQDPATVTEHVRRVRTKVEGRPPQRRLVTTLRGMGYRFD 240


>gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 218

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++      +  +   ++     E    +    + DV  ++  L        
Sbjct: 3   ILIVEDDEKLRRLLELEYNHENCEVKTCEFGEDALLIYEEFKPDVVILDIML--PDIDGT 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R       +I ++     +  L+ F+SG DD + KP    E+ AR  A+ RR  
Sbjct: 61  EVAKKLRKLDPSAGIIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARRKG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +     G +++    R+   + ++  L + E  +L YL+ N  + V+K +I  A++G 
Sbjct: 121 VLDEEINLGELKINILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           F     EN+VE +I+ LRKK+      D + + R +GY+I+W
Sbjct: 180 FSYEGSENIVEVYINYLRKKI----SSDLIKTVRGIGYTINW 217


>gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621]
 gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     +         R   
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVL-VARIEAILRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V GE   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFVSFNGIEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYK 219


>gi|46203088|ref|ZP_00052097.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRML--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 E    RV               G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 SVPGVTEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRGKIDRGFENPMIHTVRGAGYVI 224


>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 91/230 (39%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +      G  +           L    + DV  ++  L       L
Sbjct: 13  ILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWML--PRLNGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           E+ R +R  S  P++ ++        +   + G DD + KP   RE++ARV         
Sbjct: 71  EVLRRLRQSSATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLRRAEL 130

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               I    +V++     G +R+     +  + G +  L   E  +L+ L+ + G+  ++
Sbjct: 131 IKLTISADRRVASEELCLGNLRLNPQTHEVTLDGALLDLSPTEFALLQLLLRSPGRAFSR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   ++        +  V++ + +LRKKL      D +++   +GY +
Sbjct: 191 SYLIETLWSGT-YIGGDRSVDNVVLRLRKKLGKLG--DSIETIWGIGYRL 237


>gi|291534760|emb|CBL07872.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KINMEELHRYDLILLDIM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWEE 220


>gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   +      L  +   D   ++  L       L
Sbjct: 8   ILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLML--PDLNGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 66  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R          L +RE  +L  L+ N+   V + 
Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIKNKNNVVTRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 186 QLLNKIWG-PESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 232


>gi|170768541|ref|ZP_02902994.1| transcriptional regulatory protein CreB [Escherichia albertii
           TW07627]
 gi|170122645|gb|EDS91576.1| transcriptional regulatory protein CreB [Escherichia albertii
           TW07627]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G S++ F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFSVDVFERGLPVLDKARQQAPDVIILDVGL--PDISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLAIHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +       I  F                   R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 STPPPVLRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDCVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|58039285|ref|YP_191249.1| two component response regulator ChvI [Gluconobacter oxydans 621H]
 gi|58001699|gb|AAW60593.1| Two component response regulator ChvI [Gluconobacter oxydans 621H]
          Length = 256

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L+DD   +          +G ++  +   E      +S    ++ ++          
Sbjct: 26  IIALVDDDRNILASVQMTLEAEGFTVHTYTDGESALQGITSRPVSLAVLDV--KMPRMDG 83

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +RA S +P+I ++        L     G DD + KP   R ++ R+ A+ RR  
Sbjct: 84  MELLQRLRARSNLPVIFLTSKDEELDQLMGLRLGADDYITKPFSQRLLIERIRALLRRQD 143

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            S                G + +          G+   L   E  +++ L    G   ++
Sbjct: 144 ASRAEATGVAAVGSAIVRGQLSLDETRHQCLWGGQDIALTVTEFLLVKALALRPGMVKSR 203

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            Q+  A YG  +  V++  ++SHI ++RKK R     F+ +++   +GY 
Sbjct: 204 DQLIDAAYG-DNIYVDDRTIDSHIKRVRKKFRQVDDEFNQIETLYGIGYR 252


>gi|257485259|ref|ZP_05639300.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010859|gb|EGH90915.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A    DG S+    + +    +    + D+  ++  L        
Sbjct: 6   ILIVEDDADSASILEAYLRRDGFSVGLAENGQRGIDMHRQWKPDLILLDVMLPL--VSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S  P+I ++        L     G DD V KP + +E++ARV A+ RR + 
Sbjct: 64  DVLSAVRRCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPKEVVARVHAVLRRSQQ 123

Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +       +          +     +    +  L   E +IL  L+    K   + ++
Sbjct: 124 NASNDRHLRYQNLLVDLDAVTAIIEGHDGTDTLLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L D      VV++H+  LR+KL      + + + R +GY  
Sbjct: 184 LEIC--LPDSEALARVVDAHVHNLRRKLEIHGVDNVLVTVRSVGYRF 228


>gi|238917552|ref|YP_002931069.1| two-component system, OmpR family, phosphate regulon response
           regulator PhoB [Eubacterium eligens ATCC 27750]
 gi|238872912|gb|ACR72622.1| two-component system, OmpR family, phosphate regulon response
           regulator PhoB [Eubacterium eligens ATCC 27750]
          Length = 222

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D   +++       + G  +  F S +           D+  ++  L    G  
Sbjct: 3   LIYIVEDDESIREIETIALKNSGHMVGAFGSSKEFFKKLDEILPDLVLLDVMLPDESGYD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRR 118
           +++  R+  A  ++P+I ++   +    +   + G DD + KP    E++ RV A + R 
Sbjct: 63  IIKKLRLNSATKRLPVIMVTAKSTELDMIKGLEDGADDYIKKPFSVMELITRVKALLRRT 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G I +  +     V G+   L  +E  +L YLMAN+   +++  I   ++
Sbjct: 123 ETDEAGVLDVGEIELNHERHVVTVSGKQVELTFKEYELLRYLMANKNIVLSRDSIVLKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  +   E   V+ HI  LR+KL +      + + R +GY I+
Sbjct: 183 GT-EFEGESRTVDMHIKTLRQKLGDAGS--RIRTVRNVGYVIE 222


>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +     +    L      D+  ++  L   G   L
Sbjct: 3   ILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNL--PGVDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R  R      P++ +S    +Q  ++  D G +D + KP H  E+ AR+ +   R+ 
Sbjct: 61  EILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G I   +  R   + G    L R+E  +LEY + ++ + ++  ++   I+ 
Sbjct: 121 IQQDVCLQCGRISFDTRTRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++  N +  HIS LRKKLR  LGFDP+ +K   GY +
Sbjct: 181 GSVNSL-SNSIRVHISSLRKKLRTALGFDPIQNKIGQGYIL 220


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G +++          L  +   D+  ++  L    +  L
Sbjct: 3   ILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWML--PHQSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           E+   +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LAR         
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V++NR + G ++   + +      +   L  +E ++LEYLM + G+ +  T+I  
Sbjct: 121 ILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLEYLMRHPGQLLTHTEIHQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D+    NV+ + I  LR+K+        V +    GY  
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIELPGAVPLVHTVYGKGYRF 225


>gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +    +  D+   ++   + E   +L      DV  ++  L        
Sbjct: 3   LLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVML--PVIDGF 59

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR      P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V GE   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYML 220


>gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++     E   +L  +   D   ++  L    +  +
Sbjct: 3   LLIVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAYLGETEPYDCIILDMGL--PKQDGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            +     RA  + P+I ++        ++ FD+G DD V KP H  E+LARV AI  R  
Sbjct: 61  TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  + +LRKKL      D + + R LGY ID
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLID 217


>gi|194365077|ref|YP_002027687.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347881|gb|ACF51004.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G  G  +           L      D+  ++  L    E  L
Sbjct: 10  LLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNL--PREDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S  P+I ++        +   + G DD + KP   RE+LAR+  + RR + 
Sbjct: 68  TLCRDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRRTEA 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE---------RRILEYLMANRGKRVAKTQ 172
                E   +R     R          +   +          R+L   +A+  K +++ Q
Sbjct: 128 LPANLEPLAVRRARFSRWVFDLEHRHLVDPDDRVVVLSGAEFRLLRVFIAHANKVLSREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  A+    +   ++  ++  +S+LR KL +  G D  + + R  GY +
Sbjct: 188 LV-ALSSGRNYEAQDRAIDLQVSRLRNKLGDDGGPDGLIKTVRNEGYVL 235


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +           G  ++  +     E L +    D   ++  L       L
Sbjct: 3   ILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGL--PKLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R     VP++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRST 120

Query: 121 VSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +                  V G    L   E ++L+YLM ++G  V+KT +   IY 
Sbjct: 121 GHTSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R LGY +
Sbjct: 180 AQDHDRDSNTIEVFVGRLRRKL----GVDVIETVRGLGYRL 216


>gi|229175113|ref|ZP_04302629.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228608249|gb|EEK65555.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 235

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKINPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIQNAIVTKRGYGYALLTEW 229


>gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +  +  F + G ++E          L +S + D+  ++  L       L
Sbjct: 3   ILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRML--PQLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     +  +    +V  +   +    +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +   +  E      +    D+  ++           
Sbjct: 4   ILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPVDLVILDVM--MPKMNGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I ++     +  +     G DD V KP    E+         R   
Sbjct: 62  EVCQDIRSFSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGEL-MARVDALLRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + A  G +      R    +GE   L  +E   +   + N G+  ++ +I    +GL 
Sbjct: 121 RQDEAACGGLVWNGRERALSFEGEAIHLTPKEFDTIGLFLRNPGRAFSREEIIETAWGLG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
               E   V++HI  +R+K++       D + +    GY  +
Sbjct: 181 -SGTEGRTVDTHIRNMREKIKKSGFPVEDHLKTVWGKGYKWE 221


>gi|163796383|ref|ZP_02190343.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159178233|gb|EDP62777.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +   E      +    D++ ++          +
Sbjct: 5   IALVDDDQNILTSVTMALEAEGFEVRTYKDGEEALRGLTQRPVDLAVLDI--KMPRLDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           EL + +R  S VP+I ++        +     G DD + KP   R ++ R+         
Sbjct: 63  ELLQRLRKGSAVPVIFLTSKDDEVDEVLGLRMGADDYIKKPFSQRLLIERIRALLRRQEL 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A       S      G + +         +G    L   E  IL  L +  G    + Q+
Sbjct: 123 AADEANPASEASITRGNLVLDGARHMCTWKGRPVALTVTEFLILRALASRPGHVKNRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A YG     V++  ++SHI ++RKK +     F+ +++   +GY 
Sbjct: 183 MDAAYGDSVY-VDDRTIDSHIKRVRKKFKAADDAFNEIETLYGIGYR 228


>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|281412946|ref|YP_003347025.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281374049|gb|ADA67611.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 222

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 2   LIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFP-DGVAMDE 60

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+   
Sbjct: 61  IPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKE 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  D
Sbjct: 121 QKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG--D 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G   + + R LGY  
Sbjct: 179 DYVSDRVVDVHISAIRSKI----GKGWIKTVRGLGYKF 212


>gi|253998110|ref|YP_003050173.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. SIP3-4]
 gi|253984789|gb|ACT49646.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. SIP3-4]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D     +       + G   +        + +  +   D+  ++  L    G ++
Sbjct: 3   ILVVEDEHKTGEYLRKGLTEAGFVTDLIQDGLDGQHMALAEHYDLIILDVMLPRASGWQI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A    P++ ++    ++  +   + G DD + KP    E+LAR+  + RR +
Sbjct: 63  IAALRK--AGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                        V    R  +  G+   L  +E  +LE L+  RG+ ++++ I S ++ 
Sbjct: 121 TREADVLQVANLEVDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NV+E  + +LR K+ +      + + R +GY +D 
Sbjct: 181 M-NFDSDTNVIEVAMRRLRAKIDDPFEPKLIHTVRGMGYVLDV 222


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVML--PGIDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++        +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHKEKTNTITSGPFSLNIIEERLYRDGQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|153939321|ref|YP_001389971.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935217|gb|ABS40715.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318056|gb|ADF98433.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D  ++    DG  ++G    +  +      R D+  ++  L    E   E
Sbjct: 6   LVIEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFRPDLVLLDINL--PDESGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP + +E+        R    Y
Sbjct: 64  LCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             ++V  +GR      +   L  +E  +LE+ + NR    ++  + + 
Sbjct: 124 KEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLNK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 184 VWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGYVM 226


>gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
 gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +  S++                 D   ++  L   G+   
Sbjct: 21  LLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGIILDIML--PGKDGY 78

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++   S++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 79  EILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 138

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +        +   D R     G    L  +E  +LE LM N+   + + QI    + 
Sbjct: 139 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD     NV++ +I  LRKK+  +     + + R +GY +  N
Sbjct: 199 -FDFEGGSNVIDVYIRYLRKKIDAQYEQKLIHTVRGVGYVMREN 241


>gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +    S      + +  + DV  ++  L       +E
Sbjct: 9   LVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGL--PDMTGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        ++  D+G DD V KP    E      A V      
Sbjct: 67  VLAGLRGWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGATA 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      ET    V    +     G    L   E  +LE L+ +RGK V + ++   ++
Sbjct: 127 AETDEPVIETSSFTVDLAAKKVTKGGVEVHLTPTEWGMLEMLVRHRGKLVGREELLKEVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G    A E + +  ++++LR+KL +       + ++  +GY  
Sbjct: 187 G-PAYAKETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGYRF 228


>gi|77460466|ref|YP_349973.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384469|gb|ABA75982.1| putative two-component system, response regulator protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G+ +E   +           + D+  ++  L   GE  L 
Sbjct: 9   LIVEDDQRLAELTREYLQANGLRVEIEGNGALAAARIIKEQPDLVILDLML--PGEDGLS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           + R +R     P++ ++        +   D G DD V KP+  R +LAR+          
Sbjct: 67  ICRKVRDRYDGPILMLTARTDDADQILGLDLGADDYVCKPVRPRLLLARIQALLRRSDTL 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  R + GP+ V +  R+  +      L   E  +L  L++N G+ +++ +IF+A
Sbjct: 127 EAPAGNPRRLQFGPLVVDNALREAWLSDSGIELTSAEFDLLWLLVSNAGRILSREEIFTA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + G+     ++  ++  IS++R K+ +       + + R  GY  
Sbjct: 187 LRGIG-YDGQDRSIDVRISRIRPKIGDDPDHPRLIKTVRSKGYLF 230


>gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       ++G S+           +  +   D+  ++           
Sbjct: 6   ILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLM--MPRLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116
           E  + +R  S VP+I +S        +   + G DD + KP +  E++            
Sbjct: 64  EAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+   + G +++ +  +   V  ++  L   E +ILE+LM N  K  +   I+  
Sbjct: 124 YDNLASSEIIQIGNVKLNTLEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++     A+E   V  HI ++R+K+  +      +     LGY    N
Sbjct: 184 VWNEP--AIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDN 229


>gi|291544863|emb|CBL17972.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 200

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 25/218 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +  I     +  ++    +L+  E   S    D+  ++  L        
Sbjct: 4   ILLVEDDTAMAESLIFALEAEQFAVRHARTLDQAEE--SCQGVDLILLDVSL--PDGCGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR     P++ ++        +   + G DD + KP   RE++AR+         
Sbjct: 60  DFCKRIRQKENCPVVFLTARDDEADIVHGLELGADDYITKPFRLRELIARIRVQI----- 114

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                           R          L   ER++++YL  N G+ V + QI + ++   
Sbjct: 115 ---------------RRSKGNTPLPDTLTATERKLVQYLQINSGRVVTREQILNCLWDQH 159

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            E V++N +  HI +LR+KL    G   + + R +GY 
Sbjct: 160 GEYVDDNTLSVHIRRLREKLDAD-GVQHIRTVRGIGYQ 196


>gi|270261453|ref|ZP_06189726.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044937|gb|EFA18028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++       D++ ++  L   GE  L 
Sbjct: 4   LVVEDNGLLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIVDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  RAH    P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNSG 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++     P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIVLPPFQIDLSRRELSVGEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKKL+ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEYPQEVITTVRGQGYRFD 221


>gi|262376780|ref|ZP_06070008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308490|gb|EEY89625.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 90/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   G   L
Sbjct: 10  ILIVEDDERLARLTQEYLIRNGLEVGVEPDGNRAIRRIIAEQPDMVVLDVML--PGADGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
            + R +R H   P++ ++        +   + G DD V KP+  R +LAR          
Sbjct: 68  TICREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R E   + + + GR   + G++      E  +L  L +N G+ +++  IF  
Sbjct: 128 VPEDEVAQRIEFDDLVIDNGGRSVTLNGDLVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223
           + G+ +   ++  ++  IS++R K+ +       + + R  GY    + N
Sbjct: 188 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETN 236


>gi|254524497|ref|ZP_05136552.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
 gi|219722088|gb|EED40613.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G  G  +           L      D+  ++  L    E  L
Sbjct: 4   LLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNL--PREDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S  P+I ++        +   + G DD + KP   RE+LAR+  + RR + 
Sbjct: 62  TLCRDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRRTEA 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE---------RRILEYLMANRGKRVAKTQ 172
                E   +R     R          +   +          R+L   +A+  K +++ Q
Sbjct: 122 LPANLEPLAVRRARFSRWIFDLEHRHLVDPDDRVVVLSGAEFRLLRVFIAHANKVLSREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  A+    +   ++  ++  +S+LR KL +  G D  + + R  GY +
Sbjct: 182 LV-ALSSGRNYEAQDRAIDLQVSRLRNKLGDDGGPDGLIKTVRNEGYVL 229


>gi|182418119|ref|ZP_02949419.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666207|ref|ZP_04526194.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377937|gb|EDT75477.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237658297|gb|EEP55850.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G + +  ++      L  S + D+  ++  L       +
Sbjct: 6   ILIIEDDKYILNFISLSLKTSGYNFQCASTGLEGLSLFYSNKPDIVLLDLGLPDS--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116
           E+ + IR  S+ P+I +S        +   DSG DD V KP H      R  +       
Sbjct: 64  EIIKSIREISECPIIVVSARGQEIDKISALDSGADDYVTKPFHMGELLARIRVVERKMNR 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++ V +   +   + +  + R   V      L   E ++L  ++AN+GK +    I   
Sbjct: 124 DKVPVKDELFKCDYLTIDYEKRKVLVDDNEIHLTPIEYKLLTLMVANKGKVLTHNYILKE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G + E  +   +   ++ LR+K+         + ++  +GY  
Sbjct: 184 VWG-YGENGDSKSIRVFMASLRRKIEKNTAKPRFILTEVGIGYRF 227


>gi|167647929|ref|YP_001685592.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350359|gb|ABZ73094.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 243

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +      G+        E      +    D+  ++          L
Sbjct: 8   ILIVDDDPHIRQLLVFALAKVGLETREAADGEAALAAVAERAPDLVVLDIN--MPRLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA   +P++ +S        +   + G DD V KP   RE++ARV AI RR   
Sbjct: 66  EVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGADDYVVKPFSPREVVARVQAILRRTGA 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++     G + +  +            L   E  IL+ L A   K  ++  I 
Sbjct: 126 KAGEAAPADGLIVRGRLTLDPEAWSARWAEAEVSLTVTEFTILKTLAATPTKVFSRDAII 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    AV +  ++SH+  LR K     G D ++++  +GY +
Sbjct: 186 DRLRG-PGFAVTDRTIDSHVRNLRAKFAGVGGHDVIETRAGIGYRL 230


>gi|317493853|ref|ZP_07952270.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918180|gb|EFV39522.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++                 D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVML--PGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
            +   +RA  Q P++ +S   S+   +     G DD + KP    E    +  +      
Sbjct: 61  RVLEGVRAAKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   I+
Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKVDAPFDVKLLHTVRGMGYVLEV 223


>gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CMR15]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELP 64
           +D   + +         G       + E    L S    D+  ++  L G  G    +  
Sbjct: 2   EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMFAKEL 61

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAAIY 116
           R      Q+P+I ++     Q  +   D G DD V KP   +E+          R   + 
Sbjct: 62  RANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQLT 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +   N           +             L   E R+L +LM +  +  +++Q+   
Sbjct: 122 DDVVAINGLRLDPATHRVTAMNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G     VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 182 VWGDH-VFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 227


>gi|225575180|ref|ZP_03783790.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037588|gb|EEG47834.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 7/220 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D         G       + +        A  D+  ++  L       
Sbjct: 22  VILVVDDEKKINDLISMNLEMVGHRAIQAFTSKEALEWNQRAELDLVLLDIML--PELDG 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL        QVP+I ++   SL   +     G DD V KP    E+LARV  + RR  
Sbjct: 80  YELLPYFMK-KQVPVIYLTAKDSLMDKVKGLKLGADDYVTKPFESIELLARVETVLRRCG 138

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V    R          L  +E  +LE L+ N    +++ Q+    +G 
Sbjct: 139 RQEKEFCLGEVTVNFAQRKVFRGQNPVELTAQEFALLEVLIRNCNLALSREQLLEQAWG- 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    E   V+ HI +LRKKL  +     +++    GY +
Sbjct: 198 YVYEGETRTVDIHIQRLRKKLGWEKE---IETVYKYGYRL 234


>gi|110801908|ref|YP_697454.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682409|gb|ABG85779.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G  +E  +  E    +  S   ++  ++  L        
Sbjct: 6   IFIIEDEEKIREELTKFLEKYGYVVESSDDFENIVDISLSCNPNMILLDINL--PYYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  SQVP+I ++   S    L   + G DD V KP + +     I + +   Y 
Sbjct: 64  YICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          ++      +   +GEV  L + E +IL  L+ N+GK V++  I   +
Sbjct: 124 GIEGETEIFNCRELKYNMSTSEVSFKGEVEELTKNESKILNILIRNKGKIVSRDNIIKTL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +E +++N +  ++++LR+K+        + +KR  GY +
Sbjct: 184 W-QSNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGYIL 225


>gi|319787474|ref|YP_004146949.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465986|gb|ADV27718.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   + D  +     +G+  E             +   DV  ++  L       
Sbjct: 14  LILIADDEPAIADTLLYALRSEGLQAEHCLLGREAVERVRAGGVDVLVLDVGL--PDIGG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +RA S+VP+I ++        +   + G DD V+KP   RE++ARV A  RR  
Sbjct: 72  FDVCRQVRAFSEVPVIFLTARGEEIDRVLGLELGGDDYVSKPFSPREMVARVRARLRRRA 131

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++   +  E G   V   G     +G V  L R E  +LE L+   G  +++ Q+    
Sbjct: 132 PADDGADWQERGDFAVDRAGHRIRYRGRVLDLTRYEYALLEALLQRPGAILSRAQLMDRA 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     + +   V++HI  LR KLR      DP+ + R LGY+I
Sbjct: 192 WDSTAASGD-RTVDTHIKTLRAKLRAAGAEPDPIRTHRGLGYAI 234


>gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +++        E + ++   D+  ++  L        
Sbjct: 3   LLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNYDLVVLDINL--PYLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L   +RA + ++ +I ++    +   +   D+G +D + KP H  E+ AR+ + + RR 
Sbjct: 61  TLLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRRQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +              +     G    L  +E  ILEYL+ NRG+ V++ ++   ++ 
Sbjct: 121 VQEDLLITCQGFSFNLKTKAVSCAGGELRLTSKELSILEYLLLNRGRHVSQEELLEHVWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                   N V  H+S LRKKL+   G   + ++   GY I+
Sbjct: 181 DGMNEF-SNTVRVHVSALRKKLKAATGRVVITNEIGRGYIIE 221


>gi|257885311|ref|ZP_05664964.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257821163|gb|EEV48297.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRGNEVIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|220921258|ref|YP_002496559.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945864|gb|ACL56256.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD    +          G  +E  +       L +    D+  ++       E  L
Sbjct: 14  IFVVDDEPDARAMVGDYLRMHGFEVELCDGGASLRRLLALRMPDLIVLDLN--MPDEDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R ++A S VP+I ++   S    +   + G DD + KP   RE++ARV ++ RR   
Sbjct: 72  SIVRDLKARSSVPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAAQ 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-----------VFPLPRRERRILEYLMANRGKRVAK 170
           +                   +                 L R E  +L+  + N  + +++
Sbjct: 132 ARPPEPPERRETGGVRFGRMIVDIETLRLRDESGAEQILTRSEFALLKAFLDNPKRVMSR 191

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   +    D    +  ++  I+++RKK+  +      + + R LGY  
Sbjct: 192 ERLLD-LADARDPDAFDRAIDVRINRIRKKIEPDPANPRFIKTVRGLGYVF 241


>gi|182680347|ref|YP_001834493.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636230|gb|ACB97004.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 277

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A     G  ++   +         S    +  I+  L       L
Sbjct: 57  ILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRML--PETDGL 114

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P++ +S   S+   +    +G DD + KP    E+ ARV A+ RR  
Sbjct: 115 TLIETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPA 174

Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                A        +    R       +  L  RE ++LEYLM   G+ V +  +   ++
Sbjct: 175 AEARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVW 234

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   + N+V+ HI KLRKK+        ++S R  G+ ++
Sbjct: 235 -NYNFLPQTNLVDVHIGKLRKKIDQPGEVQMIESVRGAGFRLN 276


>gi|167760385|ref|ZP_02432512.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704]
 gi|167662058|gb|EDS06188.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   V+    A+   + + +    S +F   +      D+  ++   I   +   +
Sbjct: 7   LIIDDETAVQKAVSAVLKREQMEVSCAGSGQFALDILKENTFDIILLDV--IMPEQDGFD 64

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           L   +R      P+I +S        ++    G DD + KP          + I+ R   
Sbjct: 65  LLSELRRRRIYTPVILLSGKTEDAAQVEGLGLGADDYITKPFSKTVLVSKIQAIVRRTRQ 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +    GP  +  + +     G+   L  +E  +L   M + G   +K ++F
Sbjct: 125 YATTAESIQSPILKGPFTLHMNSQTIFKNGKEIALTSKEFALLCLFMDHPGHTFSKQELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             ++       + N +  +I KLR K+ +       + +    GY  
Sbjct: 185 QEVWKNDGS--DNNTILVYIKKLRSKIEDDPSQPFHIRTVWGKGYQF 229


>gi|162295958|gb|ABX83927.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N       +    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKVTNKNKLYKNIEIDTDTHSVYIHSENKKILLNLSLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|160945860|ref|ZP_02093086.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443591|gb|EDP20596.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
           M21/2]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + +       F   G  +    +           + D+  ++      G   L
Sbjct: 5   ILIADDESDIVSMLGNFFESKGFRVLPAFNGAEALKQV-EKQPDIILLDIN--MPGTDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           E+ + IR H   P++ ++        +  F  G DD + KP         +        R
Sbjct: 62  EVCKRIRDHISCPILFLTARIEDTDKVKGFAVGGDDYIVKPFSLVELDARVRAHLRREAR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +G + +    R      +   L +RE  I+E L  N G+   K +I+  I+
Sbjct: 122 HNFEAQVKFSGDLTIDYSERCLFFGDKRVGLAKREFDIVELLSQNPGQIFDKERIYERIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   + +VV  HI ++R K+        V++    GY 
Sbjct: 182 G-YDSEGDSSVVAEHIRRIRTKIAAYTDHIYVETVWGCGYK 221


>gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G +++     E    L  +   D   ++  L       + 
Sbjct: 4   LVVEDEPQLTLALERALEAAGFAVDTAYDGEDGWHLGDTESYDAVILDLGL--PKIDGIS 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  R   A   +P++ ++           F++G DD V KP    E++ RV A I R   
Sbjct: 62  VLGRWREAGRAMPVMVLTARARWAEKSQAFNAGADDYVTKPFEMEEVVTRVRALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     GP+R+ + G      G    L  +E RIL YL  ++G+ V+++++   +Y  
Sbjct: 122 HASPEITCGPLRIDTVGGRVSRAGLPIALTAQEFRILSYLAHHQGRVVSRSELVEHVYDR 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + NV++  ++++R+KL    G D + + R  G+ ++
Sbjct: 182 -DADPDSNVLDVLVARIRRKL----GVDVIHTLRGQGWRME 217


>gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G   +  +  E    L      DV  I+  L       L
Sbjct: 3   ILIIEDDREAASFLKKAFSEAGHIADVASDGEAGFALADGGNYDVFVIDRML--PRRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA+    P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVIAGLRANGNTTPALILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLKRRAG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         +  D     V+     +    RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 TRDVETLYRAGDLELDRLSHTVRRGGQEITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 D-YHFDPQTNVIDVHVSRLRGKIERGFDKPILHTVRGAGYMI 221


>gi|325529261|gb|EGD06214.1| DNA-binding response regulator CreB [Burkholderia sp. TJI49]
          Length = 235

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+        +         R D+  ++  L        
Sbjct: 6   ILVVEDEMAIADTIVYALGTDGMQTVHCTLGQAALDRLRDTRVDLVVLDVGL--PDLSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV         
Sbjct: 64  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNR 123

Query: 113 --AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A       +   A      + ++G      G    L R E  +L  L+ + G+  ++
Sbjct: 124 SPNAGQAGAPAAAAAAVAPGFELDAEGARLSWLGHALDLTRYEFGLLALLVRHPGRIYSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+   ++    E+ +   V++H+  LR KLR    G DP+ + R +GYS+
Sbjct: 184 EQLMDLVWHEALESAD-RTVDTHVKTLRAKLRAIDPGRDPIRTHRGMGYSL 233


>gi|307942832|ref|ZP_07658177.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
 gi|307773628|gb|EFO32844.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           S + D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALESEGYRVQTYTDGSSAFDGLQSDKPDLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR + 
Sbjct: 62  ELLRRLRQSSDLPVIFLTSKDDEIDELFGLKMGADDFIRKPFSQRLLVERVRAVMRRAQP 121

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +  A               +  +        +   L   E  IL  L    G   ++  
Sbjct: 122 KDASAPRPDAEKLLERGLLVMDQERHTCTWNNKPVTLTVTEFLILSSLAQRPGVVKSRNA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 LMDAAYD-DQVYVDDRTIDSHIKRLRKKFKMVDDDFDMIETLYGVGYRF 229


>gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++D         G       +      L      D+  ++      GE  L
Sbjct: 7   IAIVDDHRDIRDLVGKYLQKHGYRTSLAENAAAFRRLLDRNAIDLVVLDIM--MPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S VP+I ++        +   + G DD + KP + RE+LAR+ A+ RR++ 
Sbjct: 65  SLCRYLRESSTVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRRVQS 124

Query: 122 SNNRAETGPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +      +     R              G   PL   E R+L   + + G  +++ Q
Sbjct: 125 LPPQRGQLKAKEVRFERWSLNVGRRELTGEDGMAVPLSTAEFRLLSVFLDHAGLVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   E  +   +++ +S+LRKK+  +      + +    GYS 
Sbjct: 185 LLDLTVGRSAEPFD-RAIDNQVSRLRKKIESDPKSPTLIKTHWGGGYSF 232


>gi|291534769|emb|CBL07881.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNHVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           L  + V+EN +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYIWN 224


>gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +    D  +   +G +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRTLQVADLVYDLDTLEVTREGRMLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFAKPLLQTVHGVGYRL 220


>gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N]
 gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N]
          Length = 231

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG       +G +++        +   ++   D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGL--PQVTGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
              +             GR   V      L  RE  +LE L++  G+ V+KTQ+   +  
Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKLEPSGVK--IITVRGLGYCLE 219


>gi|127514245|ref|YP_001095442.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639540|gb|ABO25183.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V           G  ++  ++ E    L +    D   ++  L        
Sbjct: 6   ILIIEDNADVAGVLGDYLESQGAQVDYASNGELGLRLATEGHFDAIVLDLML--PKMDGY 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR--VAAIYRR 118
            + + +R   S VP++ ++     Q  L  F SG DD + KP    E+  R       + 
Sbjct: 64  AVAKALRQQGSSVPILMLTALDDKQDLLQGFHSGADDYLTKPFDLDELHVRLLALIKRQL 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    + GP+ +          G+   L     +IL  L++     V + +I   ++
Sbjct: 124 GRVAQGCQQCGPLTLNIAEHTAYRDGKKLQLTPSCYQILHLLISRAPNVVKREEIVQHLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G  +E    +++ SH+ +LR ++        + +   +G+ +D N
Sbjct: 184 G--EEPPNSDILRSHMYQLRNQVDKPFDTPIILTVPKIGFRLDVN 226


>gi|254488949|ref|ZP_05102154.1| DNA-binding response regulator ChvI [Roseobacter sp. GAI101]
 gi|214045818|gb|EEB86456.1| DNA-binding response regulator ChvI [Roseobacter sp. GAI101]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  + +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTAMPIIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V              E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VENNEVGETEETKVIERGDLRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R    GF  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRTADDGFSAIETLYGIGYRYNE 232


>gi|167590182|ref|ZP_02382570.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 240

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+     +  + G  +   +S    +   ++A   +  ++  L   GE  L
Sbjct: 7   ILVLDDDPEVRAWLTDVLEEAGFEVSAVDSAAHMQQRLAAAPHALVILDLKLR--GEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I IS        +   ++  DD V KP   RE+LARV A  RR   
Sbjct: 65  TVARELRRRSDVPIIMISGLGDETDRVLGLETAADDFVTKPFSGRELLARVRAQLRRTTE 124

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +                   +    R     G    L + E  +L  ++    +  ++ 
Sbjct: 125 LSMPRPASNGGGPRFCFDGWTLDLAARTLTHDGGACALTQGEFELLAAMVQQPSRVWSRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+     G F   V +  ++  I +LR+K+         + ++R +GY  
Sbjct: 185 QLLEHTRG-FGIDVYDRTIDVLILRLRRKIEPNPEQPTYIRTQRGVGYVF 233


>gi|317491839|ref|ZP_07950274.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920273|gb|EFV41597.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNGLLRHHLSVQMRDMGHQVDAAEDAKEADFFVKEQTPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  RA     P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRAEQIKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  T  P ++    R+  V   +  L   E  I+E L+ N  K V+K  +   +Y 
Sbjct: 121 GLASQVITLPPFQIDLSRRELTVNENLIKLTAFEYTIIETLIRNHAKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKKL+N+   + + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQNEYPQEVITTVRGQGYRFDIN 223


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +         S   D   ++  L       +
Sbjct: 4   ILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLML--PEINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114
           E+ R IR     P+I ++   S+   +   D G DD + KP          R +L RV  
Sbjct: 62  EVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +         E   I +  + R  +   EV  L +RE  +L  LM N     ++  + 
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++GL D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 SKVWGLED-GVETNVVDVYIRYLRNKIDVAGQPSYIQTVRGTGYVM 226


>gi|297623034|ref|YP_003704468.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164214|gb|ADI13925.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  +E  ++             D+  ++  L       +
Sbjct: 5   ILVVEDDLRLAKLLQQELSHDGHRVEVVHNGTDALVRADERAFDLVVLDLNL--PDMDGV 62

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+   +R+  +    ++ ++    +++ ++   +G  D + KP   +E+LARV    R  
Sbjct: 63  EVAERLRSGGEFGASILMLTARGDVKSRVEGLYAGASDYMTKPFSVQELLARVHVRLRER 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +        V G+   L   E R+LE  + ++G+  +K  +   +YG
Sbjct: 123 ARPAEVIRHGELVLEPGTGHCAVAGQPLALTSLEFRLLELFLTHKGRIFSKEDVEDRLYG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D     N +E  +S LRKKL        + + R +GY 
Sbjct: 183 A-DRLPGSNTIEVFVSNLRKKLAAAGMNGMIQTVRGMGYV 221


>gi|109943578|emb|CAA78098.2| protein of unknown function [Rhodobacter capsulatus]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L S    ++  ++      GE  L
Sbjct: 8   LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVM--MPGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R +R     P++ ++     +  ++  ++G DD + KP   +     I A +  +  
Sbjct: 66  SLTRDLRTKMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVPE 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         GP+R   D  +     +   L   E  ++    A+ G+ + +T++   +
Sbjct: 126 AVTAGPKYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGEVIGRTELIEEL 185

Query: 178 YGLF-----DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       +EA  +  V+  I++LR+K+  +      + + R LGY +
Sbjct: 186 -GRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRYLQTVRGLGYML 233


>gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++  ++     ++      D   ++  L       +
Sbjct: 3   ILVVEDEPTLAAQLVEALAAAGYAVDRADNGRDAHFIGDVEPLDAVVLDLGLPL--MDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + +  RA  + +P++ ++   +    +   D+G DD + KP H  E+LAR+ A I R  
Sbjct: 61  TVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARLRALIRRAG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP+ + +      V G+   L   E R+L+YLM ++G+ V+++ +   IY 
Sbjct: 121 GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLDYLMHHQGEIVSRSDLTEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL        +++ R LGY +
Sbjct: 180 AQDFDRDSNTIEVFIGRLRKKL----PAGMIETVRGLGYRM 216


>gi|145224579|ref|YP_001135257.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315444910|ref|YP_004077789.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145217065|gb|ABP46469.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315263213|gb|ADT99954.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   +          +G S+              S   D+  ++  L   G   L 
Sbjct: 5   LIAEDEPRISALVRKGLSANGFSVTVVPDGPSAYAYAHSGAFDLMVLDTGL--PGMDGLS 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   S +P+I ++   +   T        D +         +      +      
Sbjct: 63  VLRRLRAEGSALPVIVLTTRTTGADTAALLGGADDVIAKPFRLEDLVSRVRTRLSPGRAA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +R+    R   V      L  RE  + E  + + G+ + + Q+   ++G  
Sbjct: 123 RTHTLSYGNLRLDLRTRRAHVGDYSVDLSAREFALAEMFLRHPGQVLTRDQLLRQVWGN- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D     NVV+ ++  LR+KL    G     + R +GY ++
Sbjct: 182 DYEPGSNVVDVYVRYLRRKL----GARRFVTLRGMGYRLE 217


>gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
 gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
          Length = 219

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++          G +++     E   +L  +   D   ++  L       L 
Sbjct: 4   LVAEDDEALRRQLRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGL--PVRDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
             R  R      P++ ++   + Q  ++  D+G DD + KP    E+LAR+ A I R   
Sbjct: 62  ALRGWRQQGIVTPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAGG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+ + +      V G +  L   E ++L+YLM ++G+ V++T++   +Y  
Sbjct: 122 HAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  + +LR+KL    G D + ++R LGY +D
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL----GVDVIRTERGLGYRMD 217


>gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PELDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|119896984|ref|YP_932197.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119669397|emb|CAL93310.1| probable DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 243

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +     +   + G   E   +             D+  ++  L       +
Sbjct: 13  IFVLEDEPDIARLICSSLTEYGFRCEHLTTGRQLLQRARQQTPDLCIVDLGL--PDMDGM 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R ++  S   ++ ++    +   +   + G DD + KP   RE++ARV +I RR + 
Sbjct: 71  QVVRELQDGSPCAVLILTGRNDVTDRVLGLELGADDYIVKPFEPRELVARVRSILRRYQR 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR----------ILEYLMANRGKRVAKT 171
           S     +   +  +        G    +   + R          +L  L+    K  ++ 
Sbjct: 131 SAPPETSAAEKTVARFAGWTFDGGRLTMTAPDGREVNLSAAEASLLAVLLRRPNKIFSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           Q+     G  D    +  ++  IS+LR+KL +       + +    GY  
Sbjct: 191 QLL----GERDVDPFDRSIDVRISRLRRKLDDDPQNPRLIKTVYGAGYLF 236


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++       G  G  ++          +      D++ I+  L       L
Sbjct: 3   LLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGL--PRFSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL R +RA  +  P++ ++     Q  +   ++G DD + KP    E+LARV A + R  
Sbjct: 61  ELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRAG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++      P+ + +  +     G    L   E R+L Y+M ++G  ++KT++   +Y 
Sbjct: 121 GWADPVLRCPPLALDTRSQTAWRDGARIELTGSEFRLLHYMMLHQGAVLSKTRLEEHLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E  + NV+E  I +LR+KL       P+++ R  GY +
Sbjct: 181 DAAEH-DSNVMEVFIRRLRRKLDPDGTLQPIETLRGRGYRL 220


>gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +          +   +  F+S +       + R D   ++      G   L
Sbjct: 4   IVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIM--MPGIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115
            L   +R  +++P+I IS        +   + G  D + KP + RE++ RV A+      
Sbjct: 62  SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRLSKA 121

Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  ++     N    G + +F+D R   V G    L  RE  +L +L  +  +   
Sbjct: 122 GASASDDKQAAEGANLCHAGNLCIFADFRKVTVDGRAVNLTSREFDLLLFLANHLERPFG 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +   ++  +D   +  VV+  + ++RKKL        +++    GY 
Sbjct: 182 REHLIQQVWS-YDFIGDVRVVDDLVKRIRKKLAEYHSTLVINTVWGFGYK 230


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   + +    +   +   ++ F+  +       +   D+  ++  L    G  +
Sbjct: 3   ILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGFDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L++ R      + P++ ++    +   +   D G DD + KP    E+LAR+   + R+ 
Sbjct: 63  LKMCRQ--DKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ +        +     +     +   L  +E  IL YL +N  + V K  +   ++G
Sbjct: 121 EITTDTLRFHDAELNLSTYELSCGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD  VE N VE +IS LRKKL        + + R +GY +  N
Sbjct: 181 -FDADVEYNNVEVYISFLRKKLSFIKSNVIIRTVRGVGYCLGVN 223


>gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 82/224 (36%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +      G +G ++    + +       +A  D+  ++  L       LE
Sbjct: 5   LLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHAGAA--DLVVLDLGL--PDMDGLE 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IR      P++ ++        +   D+G DD V KP    E    +  +      
Sbjct: 61  VARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       ++V          G    L  +E  +L  L++  G  V +  +   ++
Sbjct: 121 DPTESEEITAQDVKVDVAAHRAFQDGRELHLTTKEFELLRVLVSQAGSVVGRDILMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  +       ++ H+S LR+KL  +      + + R LG+  +
Sbjct: 181 G-SEPIGSTKTLDMHVSWLRRKLNDDANNPRYITTVRGLGFRFE 223


>gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 253

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKTGAEADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                  + G +     GR      +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVKHGSLSFDQVGRIAYANDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLEK 220


>gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
 gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +    + E  + + +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLML--PGEDGLS 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R  ++ +P+I ++        +   + G DD + KP + RE        +  +  
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       +     G  ++    R+     E  PL   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSQDDAIITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            S   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 186 MSLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|330810400|ref|YP_004354862.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378508|gb|AEA69858.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 236

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V           G S++                 D+  ++  L   G+  L
Sbjct: 4   LLLVDDDLEVLALLRKFLEQHGYSVDVAADGTALWQAVERRVPDLIILDVML--PGDNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +RA   V +I ++    L   +   + G DD + KP   RE+LARV A+ RR   
Sbjct: 62  VLCQRLRAEHTVGIIMLTAMGELSDRVVGLELGADDYLTKPFDARELLARVRAVLRRTGE 121

Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +        +                     + PL   E  +L     +  + + + Q
Sbjct: 122 ARDTLNDSSRPILEFENWQLDVTRRELRSPDKVMIPLSTGEFELLLVFAEHPRRVLTRQQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G       +  ++  +S+LR+KL  +  G   + + R  GY  
Sbjct: 182 LLDLARGET-FDAFDRSIDVQVSRLRRKLETDLTGVSMIRTVRNSGYLF 229


>gi|296139339|ref|YP_003646582.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296027473|gb|ADG78243.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 223

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +  G       +G ++E     E       +   DV  ++      G    +
Sbjct: 5   LIADDDQRLVRGLSEGLACEGYAVETVGDGEAALIAADAGEFDVIVLDV--QMPGRNGYQ 62

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLK 120
           + R +R   +  P++ ++         D  D+G DD + KP  +   +      +     
Sbjct: 63  VVRELRRRENWTPVLMLTAKDGEYDVADGLDAGADDYLTKPFSYVVLLARLRTLLRHGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R     G    L  RE  ++  L    G+ VAK+ +  A++  
Sbjct: 123 RRPVVLRVGGLEIDVAARSVTRDGTPISLTAREFDVIATLAREAGRPVAKSDLARAVWDE 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++      +E +IS LR+K+    G + +++ R  GY I
Sbjct: 183 AEDVAGNR-IEVYISALRRKVDAPFGTESIETLRGYGYRI 221


>gi|295394476|ref|ZP_06804699.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972655|gb|EFG48507.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 227

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +           G  +   N+ E    L S    +   ++  L       
Sbjct: 1   MILIVEDDPTLSRAMAVNLIARGYKVLTANTGEQALTLASDHPIEAILLDLGL--PNMSG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116
           L++   IR  SQVP+I ++     Q+ ++  D G DD V KP         + A +  + 
Sbjct: 59  LDVIDGIRGWSQVPIIVVTARHETQSKIEALDRGADDYVTKPFALGELLARLRANLRRVP 118

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G + +        V GE   L   E +I+ YL  +  + V + ++ + 
Sbjct: 119 QETAEPVVVTSDGRLSIDLARNIVAVSGEQVSLTPHEWKIVGYLARHPNRLVRREELLTH 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G      E N    ++S++R+KL           ++  +GY  
Sbjct: 179 VWGKG-YEKESNYARVYMSQIRQKLEVDSATPKYFITEPGMGYRF 222


>gi|322376663|ref|ZP_08051156.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|321282470|gb|EFX59477.1| DNA-binding response regulator [Streptococcus sp. M334]
          Length = 233

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +++    L  ++   +    S      L      D+  ++  L   G+   
Sbjct: 4   ILVIEDNSDIQEILRTLLTEE-HEVIQAFSGTEGIMLFDQGGIDLVLLDIML--PGKNGD 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---------HREILARV 112
           ++ + IR  SQ P+I ++     +    +   G +D + KP            +   +  
Sbjct: 61  QVLKAIRKQSQTPVIMLTALSDKKLISQYLLDGANDYIVKPFDLDEVFARVTVQLRQSAE 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K  N       I+  ++  + +   E   L ++E  IL+ L+ +  K   K +
Sbjct: 121 KQPMEIGKTENLPQNLKNIQFDAESFEIKNSQETIRLAKKECLILQTLLKHPKKIFTKEE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++  ++        +N + +H+S LRKKL       + +++   +G  +
Sbjct: 181 LYELVW-EDSYLPGDNTLNTHLSNLRKKLNQLDPNQEYIETIWGVGVRL 228


>gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++    + +       S   D+  ++  +   G   L
Sbjct: 7   ILIVDDEQSILDMLKLQLEFEGYTVFIACNAKEALDKL-SYSPDIILLDINMA--GMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           +L   IR     P+I ++   S Q  ++   +G DD + KP    E    ++      +R
Sbjct: 64  DLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRREQR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +  + +    R   ++G    L  +E  I++ L +N G+   + +I+  I+
Sbjct: 124 SHNKTKSKFSEELVIDYSDRSLYIRGNKIELSNKEFEIIQLLSSNAGQVFDREKIYECIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +  V++ HI K+R K         + +   +GY  + 
Sbjct: 184 GI-DGNGDSVVIKEHIRKIRLKFSEFTDKAYITTVWGVGYKWEK 226


>gi|313887137|ref|ZP_07820833.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923366|gb|EFR34179.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 233

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++        +G  +    + E    +       +  ++      G    
Sbjct: 8   LLLVDDEEDLREILTFNLAGEGYQVSTAANAEEALKM-PLEEYHLLILDVM--MPGMSGF 64

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L  +IR   +   P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R 
Sbjct: 65  KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRS 124

Query: 120 KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  E   I      +  D +   V GE   L ++E  ILE L  +  K  ++ +I 
Sbjct: 125 LQGGLDFEESQIEIGTLLIDLDAKQVFVNGEPIDLTKKELEILELLARDPSKVFSREEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   D  V E  ++ HI+++RKKLR       + ++   GY +
Sbjct: 185 DRVW-REDVFVMERTIDVHITRIRKKLRGSGIK--IINRSGFGYCL 227


>gi|304309688|ref|YP_003809286.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
 gi|301795421|emb|CBL43619.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
          Length = 224

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +                 D+  ++  L   G    
Sbjct: 3   ILLVEDEPKTGDYLKQGLCEAGFPTDWVQDGISGSHQALHETYDLIILDVML--PGRSGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+ + IR A   +P++ ++    +   +   ++G DD + KP    E+LAR+  +  R  
Sbjct: 61  EVLQDIRSAGKDMPVLFLTARDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLRRER 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +    R      +   L  RE  +L  LM  RG+ + +  I S ++ 
Sbjct: 121 SREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLALLMRRRGEILPRALIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  + +LR K+ +      + + R +GY+++ 
Sbjct: 181 M-NFESDTNVVEVAVRRLRAKIDDPFEPRLIHTVRGMGYTLEE 222


>gi|298291535|ref|YP_003693474.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928046|gb|ADH88855.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 227

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G      ++      L  + R D+  ++  L        E
Sbjct: 7   LVVDDEPAIHRFMAPALAANGYDALRADTGTQALALVVNRRPDIVVLDLGL--PDMDGKE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R +R  S VP++ +S        ++  D G DD VNKP    E++AR+        + 
Sbjct: 65  VIRRLREWSDVPIVVLSARDREIEKIEALDLGADDFVNKPFGIGELMARLRAALRHRMQE 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K        G I V          G    L  +E  ++ +L  + GK +   QI   ++G
Sbjct: 125 KGETPVLRLGGIEVDIPRHRVTRDGAEVKLTPKEFDLVAFLARHPGKVLTHRQILRDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
              E  +   +  ++ +LR KL  +      + ++  +GY 
Sbjct: 185 PAHEH-DTQYLRVYVGQLRTKLEADPTNPALIVTEPGIGYR 224


>gi|227327067|ref|ZP_03831091.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|301069182|dbj|BAJ11970.1| response regulator PehR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 229

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  RAH    P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  +  P  +    R+  + G    L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGGPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 225

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  +    +      L+     D+  ++  L       L+
Sbjct: 5   LLVEDDPAIAEPLTRALQREGYEVGAHVTG--GSALKQVNDSDMVILDLGL--PDMDGLD 60

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           + R IRA    +P++ ++        +   D+G DD V KP    E    +  +      
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDAGADDYVTKPFRLGELLARVRALLRRSGG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +R+               L  +E  +L  L+   G  V +  I   ++
Sbjct: 121 EITEESDLSAQDVRIEVSAHRAFQGTRELQLTAKEFELLRVLVREAGAVVEREAIMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           G  D +     ++ H+S LR+KL +       + + R +G+  +
Sbjct: 181 G-GDPSGSTKTLDMHVSWLRRKLGDDANNPHYITTVRGMGFRFE 223


>gi|269839208|ref|YP_003323900.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790938|gb|ACZ43078.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 235

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + D         G  +     L   +      R  +  ++  L        
Sbjct: 4   IYIIEDEHKIADMLARHLERYGYQVHIAQDLRQVKSEFLEIRPHLVILDINL--PYYDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S VP+I IS        +   ++G DD + KP      LA+V +  RR   
Sbjct: 62  YWCRQIRTVSSVPVIYISARSDDMDQVRAIENGGDDYLVKPFSLDVALAKVHSQLRRAYG 121

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    ++        +     E  G    L R E  +L  L+   GK V+++ +  
Sbjct: 122 EYASLSITEVQAAGGLLLDASRLVAEHAGRSVQLTRNEFLLLRLLLQQAGKVVSRSALLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++      V++N +  ++++LR+KL        +++ R  GY +
Sbjct: 182 ALWEDSQY-VDDNTLTVNVARLRQKLEGIGLQQAIETVRGYGYRL 225


>gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis
           R1]
          Length = 222

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G   +     E   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGL--PRMDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +  +    +P++ ++        +   D+G DD V KP H  E++AR+ A I R  
Sbjct: 61  RVVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHIEEVIARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + + +      V G++  L   E R+L YLM +  + V++T++   +Y 
Sbjct: 121 GHATNSLSCGSVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDQIVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + N +E  + +LRKKL    G D +++ R +GY 
Sbjct: 181 Q-DFDKDSNTIEVFVGRLRKKL----GVDLIETVRGMGYR 215


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         ++G ++E  +  +            ++ ++  +        
Sbjct: 10  ILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPL--MSGY 67

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     +P++ ++    ++  +   D+G DD + KP + RE+LARV A+ RR  
Sbjct: 68  DVCQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNS 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++N+         S  R   +         L  RE  +L  LM    + +++ Q+ + +
Sbjct: 128 NTSNKKALLEYGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D   +  VV+++I  LR KLR     + + + R +G+++
Sbjct: 188 WGE-DYFGDITVVDTYIKYLRVKLRTHGLGEMIQTVRGVGFTL 229


>gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 249

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +       ++G  +    +      +    + D+  ++      G    +
Sbjct: 24  LIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEKIDLIVLDIM--MPGIDGFQ 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I IS        +     G DD + KP +  E +ARV +  RR    
Sbjct: 82  ICMKIRKDYNIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRRYVYL 141

Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N + ++                        G    L   E  IL  L  N G   +  QI
Sbjct: 142 NEKNDSNNDIDTIKVKEITINKKNHKVCKLGRELKLTPIEYDILLLLSNNLGNVFSAEQI 201

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           F  ++         N V  H+ +LR+K+         + +   +GY I+
Sbjct: 202 FKEVWKEKYFEGN-NTVMVHMWRLREKIEENPKEPTIIKTVWGVGYKIE 249


>gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++           L       +  ++          ++
Sbjct: 7   LIVDDEDEIREAIEIYLRNEGITVFKAKDGIDALMLLEEKDIHLIIMDIM--MPRMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +  +P+I +S        +   + G DD + KP +  E++AR+ +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRRYVNL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ET    V          +   V  +   L   E RILE L+ N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGTLVLDKKRKIVTVDEKEIRLTPIEYRILELLIENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 228


>gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    DG+ +      E         R D+  ++  L       ++
Sbjct: 23  LVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHL--PKVDGVD 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113
           + R+IR  S VP+I ++        L     G DD V KP +  E            +  
Sbjct: 81  VLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQAK 140

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +     E       +   D   Q     L   E R+L  L A   +  ++  +
Sbjct: 141 PAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRAYL 200

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 L +    E V++SH+SKLR+KL+       +++ R +GY +
Sbjct: 201 IENC--LPESDALERVIDSHLSKLRRKLQLAGQDGLIETVRGIGYRL 245


>gi|71279557|ref|YP_269763.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71145297|gb|AAZ25770.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 237

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G              +      D+  ++  L   G    
Sbjct: 15  ILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIKKLSPDLILLDLML--PGVDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYRR 118
           EL +  R     P+I ++      + +     G DD +    KP      +  +    + 
Sbjct: 73  ELCKQAREFYNGPIIVLTAMEDDLSEVSLLKLGADDYLRKPAKPHIMSARIEALLRRAKV 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +  D     +   +  L   E  +L  L    G+ V++ +   ++ 
Sbjct: 133 NNEKVTQELPNKLLINRDTLSVTLNNALVDLTNSEFDMLVLLADKSGQTVSREECIHSLR 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           G+ D  V    ++  IS LRKKL ++      + + R  GY +
Sbjct: 193 GI-DFDVTNRSIDMRISALRKKLNDEKSPYKLIKTIRNKGYLL 234


>gi|26988882|ref|NP_744307.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24983690|gb|AAN67771.1|AE016408_9 DNA-binding heavy metal response regulator [Pseudomonas putida
           KT2440]
          Length = 226

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV +      
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEE 223


>gi|317124251|ref|YP_004098363.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588339|gb|ADU47636.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 233

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G +     S E       S   DV  ++  L   G    
Sbjct: 5   ILVLEDDDGIRASLAMSIEGEGDTPLPHASAESALDAVRSQPIDVMLVDLMLG--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
              R +R  S  P+I +S        +   ++G DD V KP   +E        +  +  
Sbjct: 63  TFIREVRRSSDAPIIVVSARVDTHDIVAALEAGADDYVTKPFQVKELSARIRALLRRQHR 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                       A+ GP+ +  D        E   L   E R+L  L    G+  ++  +
Sbjct: 123 GHGEEGSRVVLDAQDGPLVLDVDAGLVRRGEEALHLTMTEFRLLCELAQPPGRVCSRRML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++       +E +V+ H+ +LR K+  +      + + R LGY +D
Sbjct: 183 LERVWDRG-FFGDERIVDVHVRRLRTKIERDPGQPQLLVTARGLGYRLD 230


>gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
 gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
          Length = 226

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D        DG +++     +    L +    D++ ++  L   G   +
Sbjct: 3   ILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNL--PGMDGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +R  +Q   ++ +S   S+   +   D+G +D + KP    E+ AR+ + + R  
Sbjct: 61  DVLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N       I + +  R   V GE  PL ++E  ILEY M +  K +++ ++   I+ 
Sbjct: 121 VQENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +     N V  HI+ LRKKL+  L +DP+ ++   GY +
Sbjct: 181 M-EIDSFSNAVRVHIATLRKKLKQALAYDPIVTRIGQGYCL 220


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        DG  ++  ++      +      D+  ++  L   G   L
Sbjct: 3   ILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNL--PGIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL R +R  HS+  ++ +S   ++   +   D+G DD + KP    E+ ARV   + R  
Sbjct: 61  ELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRREY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +R  +  R    +G    L ++E  ILEYLM ++G+ V+  ++ S  + 
Sbjct: 121 TQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N V  HI  LRKKLR+ LG DP+ +K   GY +
Sbjct: 181 SS-VDPFSNSVRVHICSLRKKLRSVLGCDPISNKIGEGYYL 220


>gi|299770126|ref|YP_003732152.1| AdeR [Acinetobacter sp. DR1]
 gi|298700214|gb|ADI90779.1| AdeR [Acinetobacter sp. DR1]
          Length = 247

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+ +    + +    L SS   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMVVIRAMNGKQAIELHSSQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRVGADDFVVKPFNPNEVIARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
           ++N       +    +         +          L   E +I+ +++    K   + +
Sbjct: 132 LTNKPFNKNKVYKDIEIDTDTHSVYLHAQNKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +     + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGILQMLINVRGVGYRLD 238


>gi|284049874|ref|ZP_06380084.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291571505|dbj|BAI93777.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 231

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+   L+ +       + G      ++           +  +  I+  L   GE  L
Sbjct: 12  ILIIESDQLLAENISNDLHESGYYPVVAHNTAMGLHQVMEVQPALIVIDRMLG--GESGL 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++      ++   +   +SG DD   KP      L  V    +   
Sbjct: 70  SLCRHLREMGCTAPILIFMARDAVDDRVAALESGADDYFLKPYRCEGFLDLVKLYLKSED 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + +    R          L  +E  +L+YLM +  + + + QI   ++G 
Sbjct: 130 NQLDMLRFGDLVLDLATRRAIRNHRAIDLTMKEFDLLKYLMEHPREVLTREQILENVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E NV+E +I  LR K+  +     + + R +GY +
Sbjct: 189 YDFLGESNVIEVYIRYLRLKIEEEGEKRLIQTVRGVGYVL 228


>gi|290955643|ref|YP_003486825.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645169|emb|CBG68255.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D    +   +G  +                R D   ++  L       L+
Sbjct: 21  LVVDDEPDVTDVLAGVVTGEGWQVRTAGDGATALATARVFRPDAVVLDWML--PDLDGLQ 78

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R + R   +V ++ ++   +++  +    +G DD V KP    E+LAR+  + RR  +
Sbjct: 79  VLRALRREMPEVCVLFLTARDAVEDRIAGITAGGDDYVTKPYSLEEVLARLRGLLRRAGM 138

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +           +  + R+    G V  L R E  +L +LM N  + ++K QI   +
Sbjct: 139 TAGQGTNRLRVGDLTMDEEAREVRRGGAVVELSRTEFELLRFLMRNPRRVLSKEQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     ++VE +IS LRKK+ +      + + R +GY +
Sbjct: 199 WS-YDFGGRAHIVELYISYLRKKI-DAGRSPMIHTVRGVGYVL 239


>gi|227111566|ref|ZP_03825222.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 229

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R H    P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  +  P  +    R+  +      L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRREMMIHSSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|229815074|ref|ZP_04445411.1| hypothetical protein COLINT_02116 [Collinsella intestinalis DSM
           13280]
 gi|229809304|gb|EEP45069.1| hypothetical protein COLINT_02116 [Collinsella intestinalis DSM
           13280]
          Length = 258

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 23/242 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA----REDVSAIEAFLIG-K 56
            ++++D A + +        +G +     S                 D+   +  L G  
Sbjct: 18  ILVVEDDADINEIISTQLSRNGHTCTQAFSGTEALMRLDPNGGPLPYDLVICDLMLPGAT 77

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE++++  R I   S +P+I IS   S    ++    G DD + KP    E+ ARV    
Sbjct: 78  GEQIIDSVRGID--SALPVIVISARTSTADRVELLKLGADDYLTKPFDLDELAARVEVQL 135

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVF---------------PLPRRERRILEYLM 161
           R                        V  +                  L R E  +LE +M
Sbjct: 136 RHRSKQRGPRTNKSRTPHEKASGTLVFRDWMLEPSSRTFLVAGSPLQLTRIEFNLLEAMM 195

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               +  +K  +F A +G    A +++ V  HIS +R KL+       + +   +G+ +D
Sbjct: 196 RQPRRAFSKQDLFEAAWGEP-YAGDDSTVTVHISNIRAKLKPSGTDAYIKTVWGIGFRLD 254

Query: 222 WN 223
            +
Sbjct: 255 ED 256


>gi|187934520|ref|YP_001884517.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722673|gb|ACD23894.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        + + +           + ++ +  V  ++          + 
Sbjct: 5   LVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEKIHVIVLDIM--MPKLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR    
Sbjct: 63  TCLKIRETENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122

Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  +   +       + +  +   V+GE   +   E +IL  L +N GK  +  +I+  
Sbjct: 123 LNIEDEEQVLTVKDLVIDTVSKSIIVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 183 VWDEP-FYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEK 228


>gi|116690673|ref|YP_836296.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734017|ref|YP_001765964.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648762|gb|ABK09403.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169817259|gb|ACA91842.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 242

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLEK 220


>gi|254974111|ref|ZP_05270583.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255091510|ref|ZP_05320988.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255313238|ref|ZP_05354821.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255515928|ref|ZP_05383604.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255649022|ref|ZP_05395924.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260682213|ref|YP_003213498.1| DNA-binding response regulator [Clostridium difficile CD196]
 gi|260685812|ref|YP_003216945.1| DNA-binding response regulator [Clostridium difficile R20291]
 gi|306519138|ref|ZP_07405485.1| dna-binding response regulator [Clostridium difficile QCD-32g58]
 gi|260208376|emb|CBA60883.1| dna-binding response regulator [Clostridium difficile CD196]
 gi|260211828|emb|CBE02227.1| dna-binding response regulator [Clostridium difficile R20291]
          Length = 215

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +     A F  +  ++    + E    +    + D++ ++          +
Sbjct: 3   ILIADDEISMLKILCAYFKKENFNVFTAKNGEEALDIFYENKIDLAILDWM--MPIIDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + I+ +S   ++ ++     +  ++  + G D+ + KP   R ++ R     ++L  
Sbjct: 61  EVCKEIKENSNTRVLMLTAKSQSEDEIEALNIGADEYIKKPFDPRVLIIRA----KKLIN 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N      +++           +   L ++E  ++  L+ N+G  +++ ++   ++GL 
Sbjct: 117 YKNTINIKDLKIDFGSSKVFKGDKELLLTKKELELIRCLINNKGMVLSREKLLDLVWGL- 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   V++HI +LR K+      D + + R LGYS++
Sbjct: 176 DYEGDFRTVDTHIRRLRVKIGE----DIIKTYRGLGYSLE 211


>gi|313902686|ref|ZP_07836084.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466983|gb|EFR62499.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 258

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ----SSAREDVSAIEAFLIGKGE 58
           +++DD A ++          G  +                    R  V+A+   L+  G 
Sbjct: 28  LVVDDEAEIRRLLRLYLERAGFVVMEAGDGPSALAAFDAAGRQGRP-VAAVVLDLMLPGM 86

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   +R  S VP++ ++    +   L  F  G DD V KP   REI+ARV A+ RR
Sbjct: 87  DGWEVCERLRERSPVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREIVARVRALLRR 146

Query: 119 LKVSNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              +                        R   V G+  PL R E  +L  L  +RG+ + 
Sbjct: 147 GMPAAGATRPPGAEPALELGRLVIDPGARTVTVDGQPVPLTRTEFDLLYILARHRGQTLG 206

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + QI   + G  D   +E VV+SH+  LR+KL        + +   +GY  D
Sbjct: 207 RQQILDRLRG-GDYFGDERVVDSHVRNLREKLEPFGLRHLIATVWGVGYRFD 257


>gi|256822840|ref|YP_003146803.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796379|gb|ACV27035.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +   ++   +      L    +     ++  L   G   L
Sbjct: 5   ILLVEDDDKLASLVAEFLESNDYQVQIEANGSKAIDLIIEQQPRAVILDVML--PGADGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R +R H   P++ ++        +   ++G DD ++KP+  R +LA + A+      
Sbjct: 63  TVCRTVRPHYSGPILMLTSMSDDIDEVAGLETGADDYLSKPVKSRVLLAHLRALLRRVEV 122

Query: 117 -RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++ S +    G +++    R     G+V  L   E  +L  L    G+ V++ ++  
Sbjct: 123 SEAIENSTDFIHAGKVKINPQNRTVISDGQVVHLTTAEYNLLWLLAERSGEVVSREELHR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +   +    +  ++  IS+LRKKL +       + + R  GY +
Sbjct: 183 KTF-RLEYDGTDRSIDLRISRLRKKLGDDPKLPYIIKTIRGEGYLL 227


>gi|168702458|ref|ZP_02734735.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         ++G +++     E  +    S   DV  ++  L       L 
Sbjct: 2   LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVML--PKVDGLS 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           L +  RA      ++ ++        +   D+G DD ++K     E L       I R  
Sbjct: 60  LLKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       + + +  R     G    L  RE  +LE+L  +RGK V ++ I+  +Y 
Sbjct: 120 QQKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE    NVV+ +I  LR K+  +     + ++   GY +
Sbjct: 180 EYDEN-TSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYML 219


>gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 257

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 13  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGL--PRMSGL 70

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 191 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 230


>gi|163733850|ref|ZP_02141292.1| DNA-binding response regulator ChvI, putative [Roseobacter
           litoralis Och 149]
 gi|161392961|gb|EDQ17288.1| DNA-binding response regulator ChvI, putative [Roseobacter
           litoralis Och 149]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKRLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  S +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKSAMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           VA             E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VAGDIVADSEETKVIERGDLRMDPLRHSVSWKGKDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADEEFSAIETLYGIGYRYNE 232


>gi|153853764|ref|ZP_01995120.1| hypothetical protein DORLON_01111 [Dorea longicatena DSM 13814]
 gi|149753514|gb|EDM63445.1| hypothetical protein DORLON_01111 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDHNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTGAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           L  + V+EN +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYI--WN 224


>gi|114327401|ref|YP_744558.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315575|gb|ABI61635.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 255

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +   +              +    +  ++  L   GE  L
Sbjct: 23  ILIVDDDREIRELLARFLEKNRFRVTAVRDSREARRAWVNGHFQLLVLDLML--PGEGGL 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R+ S VP++ ++        +   + G DD V KP + RE+LAR+ A+ RR + 
Sbjct: 81  DLARWVRSQSLVPIVMLTAMGEETDRIVGLEIGADDYVAKPFNPRELLARIRAVLRRTEG 140

Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                ET   +                   QG   PL   E  +L  L+    + + +  
Sbjct: 141 ELRTVETANQKSRRFAGWVLEPARRRLINPQGAEVPLTGGEYDLLSALVDRPNRVLTRDM 200

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   + G      +   ++  IS+LR+KL +       + + R  GY +
Sbjct: 201 LLDLLRGRQAGPFD-RAIDVAISRLRRKLEDDGRQSQLIKTVRSGGYVL 248


>gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G +++   +         +   D+  +   L       LE
Sbjct: 5   LLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAG--DIDLMVLDLGLPEMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+           + 
Sbjct: 63  VARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+ +D R   +      L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 121 GAEVPVVHGVRIDNDSRRAWLGERELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFE 220


>gi|182679656|ref|YP_001833802.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635539|gb|ACB96313.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           ++  D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEGEGYRVQTYTDGSTALDGLKTSPADLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFIKKPFSQRLLVERVKAILRRANP 121

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +              +  +      + E   L   E  IL+ L    G   ++  
Sbjct: 122 KEAVPQKENEIKILERGQLKMDPERHTCTWKNEGVTLTVTEFLILQALATRPGVVKSRNA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 LMDAAYD-DQVYVDDRTIDSHIKRLRKKFKAVDDEFEMIETLYGVGYRF 229


>gi|167761322|ref|ZP_02433449.1| hypothetical protein CLOSCI_03727 [Clostridium scindens ATCC 35704]
 gi|167660988|gb|EDS05118.1| hypothetical protein CLOSCI_03727 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G       D +S     +++  + +Q   R D+  ++  L       L
Sbjct: 9   ILVLEDDQELAEGIEMALISDDLSFTLCGTIKEAKKMQREKRFDLLILDINL--PDGSGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR  S+VP++ ++        +   + G DD + KP     + AR+ A+ RR   
Sbjct: 67  ELCREIRRGSKVPIMLLTARDMELDIVKGLECGADDYITKPFSLMVLRARIRALLRRTIG 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +        F        +  +   L R E+RIL  L+ N G+ + + ++   ++  
Sbjct: 127 DSKQEYVKEPFRFRFESMEFYKDHIPVELSRTEQRILYLLVTNAGRILTRERLMEWVWPD 186

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             E VE+N +   I +LR KL +     + + +    GY
Sbjct: 187 GTEYVEDNALSVGIRRLRDKLEDSPSKPEYIRTVYGKGY 225


>gi|145297240|ref|YP_001140081.1| DNA-binding transcriptional regulator RstA [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850012|gb|ABO88333.1| two-component system response regulator RstA [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +     +      + +      +       + + D+  ++  L   G+  L
Sbjct: 4   ILFVEDDPEIGQLISSWLARHDIDVLLEPRGDMALARIEAEQPDLVLLDIML--PGQDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112
            L R +R   + P++ ++   S    +   + G +D + K             +      
Sbjct: 62  SLCRDLRPRFKGPIVMLTSLDSDMNQILSLELGANDYILKTTPPPVLLARLRVQFRQQGQ 121

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A           R + G +R+   GRD  + G+  PL   +  +L  L  + G+ + +  
Sbjct: 122 APQAAVANTPPQRLQFGRLRIDGPGRDVRLDGDSIPLSTADFDLLWELACHAGQILGREA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +F ++ G  D   ++  ++  IS+LR+KL +       + + R  GY +
Sbjct: 182 LFRSLRGR-DYDGQDRSMDVAISRLRRKLGDDSNNPTRIKTVRQKGYLL 229


>gi|77404656|ref|YP_345230.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390306|gb|ABA81489.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +       + G +++    L   +   + A  D++ ++  L   G  + 
Sbjct: 3   ILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLP-DGLGIP 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +        P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR   
Sbjct: 62  FLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGG 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N     G   V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++  
Sbjct: 122 NPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F+  +E N +E ++S+LR+KL        +++ R LGY +
Sbjct: 181 FEAEIESNAIEVYVSRLRRKLD----HSVIETVRGLGYRL 216


>gi|27383255|ref|NP_774784.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27356429|dbj|BAC53409.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +           + + D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTQPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 62  ETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSAP 121

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +                  R+  +      + E   L   E  IL+ L    G   ++ 
Sbjct: 122 KDPTVAPKENDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVVDNEFEMIETLYGVGYRF 230


>gi|148543652|ref|YP_001271022.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153066|ref|YP_001841407.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227363377|ref|ZP_03847503.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682015|ref|ZP_08161533.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530686|gb|ABQ82685.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224410|dbj|BAG24927.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227071566|gb|EEI09863.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324978659|gb|EGC15608.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 87/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +    E        E   ++       I   L    +  +
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEKWHCEFAYDGVEAEEKFNADPHKWDIILLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR  S   PLI ++   +    +   + G DD V KP     ++AR+ A+YRR  
Sbjct: 63  QVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRRTH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKR 167
           ++            +     +                       +E  +L+ L +   + 
Sbjct: 123 LNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTLASKPRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++Q+   ++  ++   +E  V++HI KLR+KL N  G   + +   +GY  D
Sbjct: 183 FTRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLENI-GPQVIKTVWGVGYKFD 234


>gi|86135738|ref|ZP_01054317.1| DNA-binding response regulator ChvI [Roseobacter sp. MED193]
 gi|85826612|gb|EAQ46808.1| DNA-binding response regulator ChvI [Roseobacter sp. MED193]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVAMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR   
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G +R+         +G+   L   E  +L+ L    G   ++
Sbjct: 122 LNSDEAGIEAPETKVMDRGNLRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 DQLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRTADTDFAAIETLYGIGYRYNE 233


>gi|324999596|ref|ZP_08120708.1| response regulator receiver protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   I    + G +++   +           R D+  ++  L        
Sbjct: 4   ILIVEDDPGIRGALIRGLSERGHAVDSAPTAMAGLESAVGTRPDLVVLDLGL--PDMDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRRL 119
            + R++R  S VP+I  +        +   D+G DD + KP      +   R        
Sbjct: 62  TMLRMLRGASSVPVIVATARDDESEIVAVLDAGADDYLVKPFAAAQLDARIRAVLRRLGD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + V    R   + G    L  RE  +L YL A   + V+K ++ + ++ 
Sbjct: 122 GTPDPTVVVGGLSVDPRSRRAHLDGGELELTPREFDLLHYLAARADQVVSKRELVTEVWQ 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                  +  V+ H+S LR+KL         + S R +G  +
Sbjct: 182 QP-YGGADKTVDVHLSWLRRKLGETAQAARYLHSVRGVGVRL 222


>gi|229489584|ref|ZP_04383447.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229323681|gb|EEN89439.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D   V +         G ++         ++  +    D+  ++  L   G    
Sbjct: 4   ILFIEDDPAVAEAITLGLNRLGHNVSHRPDGNG-DFDDALGATDLVLLDLGL--PGADGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I ++       T+   ++G DD V KP   R + AR+ A+ RR   
Sbjct: 61  EICRRIRTRSSIPIIILTARSDDIDTVAGLEAGADDYVVKPASPRVLDARIKAVVRRSAP 120

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  R +  P                    G +  L   E R++  L  N G+ +++ Q+ 
Sbjct: 121 ATTRPDATPGAETFGDLELDRSSLQVRKAGMLLTLTPTELRLILALTENPGQVLSRRQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           SA +   +   +  +V++ + +LR K+ +       +++ R  GY  +
Sbjct: 181 SAAWDQ-EYLGDSRIVDAAVQRLRGKIEDDPAAPTVIETVRGFGYRFN 227


>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + D       D+G+ +      +           D   ++  L   G   LE
Sbjct: 8   LLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGWDALVLDIML--PGVDGLE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR++ 
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A             +    RD  + G    L  RE  +L +     GK  ++  + 
Sbjct: 126 LAQNARLESGSLTIAGLAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 NAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKF 231


>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMR--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+         R   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QHAQIQYQGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|15605840|ref|NP_213217.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
 gi|2982999|gb|AAC06611.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
             LI+D   +          +G  +E F          S    D+  I+  L    G ++
Sbjct: 8   IALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFRI 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +      ++P+I I+     +  L  F+ G DD + KP   +E++ARV A+ +R K
Sbjct: 68  ANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRYK 127

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     +   + + ++ +   V G    L   E +IL+ LM N G+ V+++ +   ++
Sbjct: 128 KVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKLW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++    E  ++ H+  +R KL    G   + + R +GY  +
Sbjct: 188 D-YERETTERAIDVHVKHIRDKLGKYKG--LIKTVRGVGYKFE 227


>gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acinetobacter calcoaceticus PHEA-2]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSRIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|251789641|ref|YP_003004362.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247538262|gb|ACT06883.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + +     A     G S    +              DV  ++  L   G     
Sbjct: 4   LVVDDDSALCHWLGAKLHAHGHSCRLIHDGAEALQAIEQEVYDVVLLDRML--PGMDGFS 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++     P++ +S        +   + G +D + KP +  E+  R+  I  R K  
Sbjct: 62  VLRALQGRPHPPVMLLSALDRDVDRVMGLELGAEDYLGKPFNLNELRLRLDIIVGRDKRR 121

Query: 123 NNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +       +V    R     G+   L  +E ++L  LM + GK +++T +   ++G
Sbjct: 122 HEQRQVLTFADLKVDCLQRSVWRGGKRIELTDKEIKLLMILMEHPGKVISRTLLLERVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + N+++ H+SKLR K+        + + R +GY +
Sbjct: 182 -YQFDPQTNLIDVHLSKLRAKIDKGFSLPLIKTLRSVGYCL 221


>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G+ +      +           D   ++  L   G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           E+ R  RA     P+I IS   S    +   + G DD + KP          + +L RV 
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+ +  ++ +       + +    RD  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  N      + +    GY  
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVERNPAQPTRILTVWGRGYKF 231


>gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
          Length = 246

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   +      L  +   D   ++  L       L
Sbjct: 8   ILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLML--PDLNGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E+ R +R     P+I ++   S+   +   D G DD + KP                +  
Sbjct: 66  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R          L +RE  +L  L+ N+   V + 
Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 186 QLLNKIWG-PESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYM 232


>gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 82/233 (35%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +      +  +   D+  ++  L       L
Sbjct: 6   LLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLML--PDIDGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EI 108
           E+ R IR      Q P+I ++        +     G DD + KP   R            
Sbjct: 64  EVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    +         N  +   I +  +    + Q E+      E +IL+ L  +    +
Sbjct: 124 VMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVL 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +++ +   + G      +  +V+ HI  +RKKL +       +++ R +GY +
Sbjct: 184 SRSLLLEEVTGEK-STPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235


>gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + +         +G      ++ +       +    +   +  +        
Sbjct: 4   ILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPM--MDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A   VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR  
Sbjct: 62  QLIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRAN 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +               D    +   +    P++E R+L +L++   +   + ++  +I+G
Sbjct: 122 IVAQHQLIIGNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D  ++E VV++ I+K+R+K+ +   F  +++ R +GY 
Sbjct: 182 M-DTDLDERVVDACINKIRRKVEHLPDFK-IETVRGVGYR 219


>gi|302866216|ref|YP_003834853.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502774|ref|YP_004081661.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302569075|gb|ADL45277.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409393|gb|ADU07510.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 218

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   +             D   ++  L   G    
Sbjct: 3   LLVVEDETRLAAALRRGLSAEGFVVDVAATGPDGLDAARHGEYDAMILDVML--PGLSGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     +P++ +S         D  D G DD + KP  +  +LAR+ A+ RR  
Sbjct: 61  EVVRRLRAEQRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T    R+    R          L  RE  +L+YLM   G+ V+KT++   ++ 
Sbjct: 121 PRRPTVLTVGDLRLDPARRRVTRADTEVVLTSREYALLDYLMRRPGEVVSKTELLDHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N VE ++  LR+K+    G + +++ R  GY +
Sbjct: 181 AS-VDTAPNAVEVYVGYLRRKI----GRERLETVRGAGYRL 216


>gi|257784884|ref|YP_003180101.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473391|gb|ACV51510.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   + L   +G   +   S E       +A  D+  ++  L   G    
Sbjct: 4   ILVVEDDHQIQQELVLLLQRNGFEAQALTSFEAVPQQIIAAHPDLVLLDLNL--PGIDGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           ++ R +R  S VP+I ++   +    L     G DD + KP + + +L  +         
Sbjct: 62  QICREVRQLSNVPIIVVTSRNTDLDELMVLSLGADDFIAKPYNTQILLMHITSVLRRTNS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  +     + + S         +   L + E RIL  LM N G  V++ +I   ++
Sbjct: 122 DVTTGAQLSHAGVTLDSSSCKVSANQKSVELTKNELRILSLLMQNAGTVVSRQRIQEELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE V++N +  +IS LR  L +    D V ++R LGY I+
Sbjct: 182 -QSDEFVDDNTLTVNISHLRNTLASIGVEDFVMTRRGLGYVIE 223


>gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 248

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L       L
Sbjct: 26  ILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRML--PRRDGL 83

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +R  +   P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 204 D-YHFDPQTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|166030488|ref|ZP_02233317.1| hypothetical protein DORFOR_00149 [Dorea formicigenerans ATCC
           27755]
 gi|166029740|gb|EDR48497.1| hypothetical protein DORFOR_00149 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++K QI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKRQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           L  + V+EN +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYIWN 224


>gi|77359810|ref|YP_339385.1| transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874721|emb|CAI85942.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +   +  +       + +  +  ++  L   G   +
Sbjct: 7   ILLVEDDISLAQWVAEYLTEQGYCVHVCHRGDEVVGQVKTLKPQLILLDIML--PGLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+  Q P+I ++        +   + G  D + KP+  R +LAR+ +  R    
Sbjct: 65  SVCRELRSFYQAPIIMLTARDDEMDEVIGLEVGASDYIMKPVRPRALLARIKSALRLTTQ 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S+   +   I         S+ R  ++      +   E  +L YL +N G+ V++  +F 
Sbjct: 125 SSQSHKQHSIINVGALSINSESRSVKLNDIDINISSAEYLLLHYLASNAGQVVSRDAVFK 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A  G  +    +  V+  IS LRKK   +    + + +    GY +
Sbjct: 185 ATKGR-EYDGLDRSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLL 229


>gi|30248676|ref|NP_840746.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30180271|emb|CAD84578.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding domain [Nitrosomonas
           europaea ATCC 19718]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD     +         G  +   ++     +  +    D   ++  L   G   L 
Sbjct: 8   LVADDHEETLNFIRRGLTQAGHIVSTVDNGREALFRATEESYDAIVLDRML--PGLDGLS 65

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +++RA     P++ ++    +   ++  ++G DD + KP    E+ AR+  I RR  V
Sbjct: 66  ILKMLRAGGIRTPVLLLTAMTRIADRVEGLENGADDYLVKPFAFSELHARLNVIIRRPAV 125

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +    R     G    L  RE  +LE L+ N  + + KT +   ++ 
Sbjct: 126 LEPETSLRVLDIELDLGKRIARRGGRRIDLQPRELLMLEVLLRNPHRVMTKTMLLERVWD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + N+VE+HIS+LR KL      D + + R  GY I
Sbjct: 186 -FDFDPQTNIVETHISRLRAKLNADFDQDAIITVRGAGYMI 225


>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G+ +      +           D   ++  L   G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A           + +    R+  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  N      + +    GY  
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKF 231


>gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 258

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +G +++        +    + + D+  ++  L       +
Sbjct: 3   LLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGL--PKMDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++  +   ++   +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120

Query: 121 VSNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +      +       + GE   L +RE  +LE L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N VE ++  LRKKL    G D + + R +GY I
Sbjct: 181 WKDE-ISSNAVEVYVHSLRKKL----GPDLIRNIRGMGYMI 216


>gi|73749211|ref|YP_308450.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660927|emb|CAI83534.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     +   ++G  +   +  +    +  +   DV  ++  L        
Sbjct: 3   LLLIEDDTNLAKVITSGLEENGYVVNWESDGKLGAEMALAYTFDVIILDIML--PEINGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR   +Q P+I ++        +   D G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SVCKKIRTEGNQTPVIMLTARYQEDDRVRGLDCGADDYLVKPFSFPELLARLRALLRRAN 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +     + + +  R      +      +E  ILEYL+ N+   + K  I   I+ 
Sbjct: 121 NQHSPSIKLRKLTLNTVDRRVFYDDKEIEFTAKEYGILEYLVLNKNCIITKNMIEEHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  +  NV+E  IS++RKKL N      + + + LGY I+
Sbjct: 180 ESESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGYIIE 221


>gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D       + G +++  ++               + I+  L       L
Sbjct: 3   LLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIML--PERDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA   + P++ +S   S+   +     G DD + KP    E+L RV A+ RR +
Sbjct: 61  SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +     GP+ +    +     G    LP +E  +L Y+  N G  ++KT I   +Y
Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++   + NVV+  + +LR K+    G   + + R +GY +
Sbjct: 181 G-YNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221


>gi|69247350|ref|ZP_00604314.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227550602|ref|ZP_03980651.1| response regulator [Enterococcus faecium TX1330]
 gi|257880266|ref|ZP_05659919.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883065|ref|ZP_05662718.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257888626|ref|ZP_05668279.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891351|ref|ZP_05671004.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893652|ref|ZP_05673305.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896996|ref|ZP_05676649.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898937|ref|ZP_05678590.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|258614457|ref|ZP_05712227.1| DNA-binding response regulator [Enterococcus faecium DO]
 gi|260560436|ref|ZP_05832610.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208954|ref|ZP_05923359.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289565234|ref|ZP_06445686.1| response regulator CsrR [Enterococcus faecium D344SRF]
 gi|293378688|ref|ZP_06624846.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293556340|ref|ZP_06674922.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293560677|ref|ZP_06677161.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293569250|ref|ZP_06680548.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|293571128|ref|ZP_06682167.1| DNA-binding response regulator [Enterococcus faecium E980]
 gi|294615033|ref|ZP_06694922.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|294618641|ref|ZP_06698179.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|294623216|ref|ZP_06702091.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|314937954|ref|ZP_07845267.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314940986|ref|ZP_07847888.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314947557|ref|ZP_07850969.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314953136|ref|ZP_07856091.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993016|ref|ZP_07858410.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995301|ref|ZP_07860411.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194873|gb|EAN09345.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227180310|gb|EEI61282.1| response regulator [Enterococcus faecium TX1330]
 gi|257814494|gb|EEV43252.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818723|gb|EEV46051.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257824680|gb|EEV51612.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827711|gb|EEV54337.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830031|gb|EEV56638.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833561|gb|EEV59982.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836849|gb|EEV61923.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260073438|gb|EEW61766.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260076993|gb|EEW64715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289163055|gb|EFD10903.1| response regulator CsrR [Enterococcus faecium D344SRF]
 gi|291587956|gb|EFF19806.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291592164|gb|EFF23784.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|291595114|gb|EFF26453.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291597373|gb|EFF28549.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|291601508|gb|EFF31778.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291605351|gb|EFF34801.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|291608810|gb|EFF38093.1| DNA-binding response regulator [Enterococcus faecium E980]
 gi|292642616|gb|EFF60768.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|313590486|gb|EFR69331.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592467|gb|EFR71312.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594804|gb|EFR73649.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313600178|gb|EFR79021.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642677|gb|EFS07257.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313646000|gb|EFS10580.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E   +         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNAEVHYNGRTGLDAALNNEWDAILLDLML--PELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114
           E+ R +R     P+I ++   S+   +   D G DD + KP          R +L R+  
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGDKNVAKQTTITYRDLTIEKENRVVRRGNEVIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 NKVWG-YETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVM 226


>gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +             +++     E    + ++   D+  ++  L        
Sbjct: 3   ILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLL--PRLNGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R H + +P++ ++    L   +   D+G DD + KP   RE+ AR+ A+ RR  
Sbjct: 61  EVCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   A      +  +   +      + PL  +E  +LEYLM +  + +++T I   ++ 
Sbjct: 121 TTKTAALCFLDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E +  NV++ +I  LR+KL      D + + R  GY +
Sbjct: 181 CETEHL-SNVIDVYIRYLRRKLCENHEPDVIHTIRGAGYQL 220


>gi|218133400|ref|ZP_03462204.1| hypothetical protein BACPEC_01265 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992273|gb|EEC58277.1| hypothetical protein BACPEC_01265 [Bacteroides pectinophilus ATCC
           43243]
 gi|291520917|emb|CBK79210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
 gi|291539317|emb|CBL12428.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
 gi|291549703|emb|CBL25965.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           L  + V+EN +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYI--WN 224


>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++            S++     E    + S    D+  ++  L    +   
Sbjct: 13  ILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSYDLVLLDLML--PKKSGK 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ + +R  ++ P+I I+   S+   ++  D G +D + KP    E+    RVA   +  
Sbjct: 71  EVCQELRKLAETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        I++    +   +      L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 131 SNNKQFYLENEIKMDILAKKVFLNEVEVSLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+  K     + + R  GY  
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKIDPKSY--YIHTIRGFGYIF 228


>gi|325289289|ref|YP_004265470.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964690|gb|ADY55469.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     A     G      N+ +    +   A   V  ++  L        
Sbjct: 5   IMLIEDDTSIAKLLAAHIEKYGYECVIINNFDKVLDIFIKADPHVVLLDINL--PKYDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                IR  S  P+I IS   S    +   +SG DD + KP ++  ++A++ +  RR   
Sbjct: 63  YWCGKIRQISNHPIILISARDSEMDQVMGIESGADDYITKPFYYDVVIAKIKSQIRRCFG 122

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     +     + ++ +  +   +     L ++E  + E LM+   K V++  + 
Sbjct: 123 ALAPDGSEERKVGCEGLFLYLERPELRFRDASVTLTKKEAVLAEILMSKSPKAVSRDVLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++      V+EN +  ++++LRKKL+     + +++ R  GY ++
Sbjct: 183 ERLWDDVHF-VDENTLNVNVARLRKKLQELGIEEAIETVRGQGYRLN 228


>gi|307331601|ref|ZP_07610710.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882728|gb|EFN13805.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                  DV  ++      G   L+
Sbjct: 6   LLAEDDRAIRQALERALTLEGYRVTAVPDGIEALAAIHRECPDVVVLDVM--MPGVDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        ++  D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 64  VCRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVVKPFEVEEVFARLRALLRRAAP 123

Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   A                  S  R          L R E  +LE L  N G  +   
Sbjct: 124 AEPAAPEDAAIDGVLEVADLRLDSSARRVWRGSTELELTRTEFDLLELLARNAGIVLDHA 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I++ I+G +D       +  +I  LR+K+  +     + + R +GY++
Sbjct: 184 TIYARIWG-YDFGPGSKNLAVYIGYLRRKVDPEGRTPLIHTVRGVGYTL 231


>gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  I +  D+   ++G    +   +L      D   ++  L   G    
Sbjct: 3   LLVVEDHHDLREAMIEMLADE-FEVDGACDGDEGLFLAQQNIYDAIILDVML--PGIDGF 59

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R      P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  SIVRRLREDGIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +   V G+   L  ++  +LEYL+ N+G  + K QIF  I+
Sbjct: 120 ALTTKQTIRYRGIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD     ++VE  + +LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTISIVEVFVHQLRKKLEPFGYHADIQTVRGIGYML 220


>gi|237753132|ref|ZP_04583612.1| DNA-binding response regulator [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375399|gb|EEO25490.1| DNA-binding response regulator [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   ++          G+ +   +S     EW++      ++ ++  L       
Sbjct: 4   ILIVEDDLEMQKLLQDYLQQSGMEVITTDSPNTAIEWIKQQKGFHLAVLDIML--PEMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL   IR  S +P+I  S    + + +  F +G DD + K     E+         +  
Sbjct: 62  LELCERIREISDIPIIMSSARGDISSKMLGFKNGADDYLAKSYEPLEL-VARINALLKRY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + S  R  +V+G    L   E  IL  L  ++GK  ++  +  AI  +
Sbjct: 121 TKTQSITYKDLEIDSTKRKVKVEGIAIELTPAEFEILNLLFLHKGKPFSRNSLSQAIASI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                    +++HI  LR KL +       + S   +GY  
Sbjct: 181 A-PDSSLRSIDTHIRNLRAKLGDDAKTPKYIQSVWGIGYKF 220


>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PEMDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGTPLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PELDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGATLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|150015084|ref|YP_001307338.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901549|gb|ABR32382.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        + + +           +    +  +  ++          + 
Sbjct: 5   LVVDDEKEIRDAIEIYLRGENLKVFKAEDGLEALDILEKEKIHLIILDIM--MPRFDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR +  
Sbjct: 63  TCLKIRESQNLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRRYEKP 122

Query: 123 NNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  E   I       + +  +   ++GE   +   E +IL  L +N GK  +  +I+  
Sbjct: 123 LNVEEGKDIIKVKDLVIDTVAKKITLRGEDVKVTATEYKILYLLASNLGKVFSIKEIYEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 183 VW-EEIFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEK 228


>gi|116326604|ref|YP_796525.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|3687663|gb|AAC62213.1| LcoR [Lactococcus lactis]
 gi|76574958|gb|ABA47427.1| response regulator [Lactococcus lactis]
 gi|116108972|gb|ABJ74094.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        D    E   S        +    D+  ++           
Sbjct: 4   ILLVDDEQRMLDLLGLYLEGDIYHCEKEISGVQAIKRVAKGNFDLILLDVM--MPDLDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S++P+I ++             +G DD + KP     +         R   
Sbjct: 62  TVCKNIREFSEIPIIMLTARGQNTDVSFGLKNGADDYITKPFDETIL-LARIEAILRRTS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++ +   + +  +     +  ++  +   E  +L+  + ++    ++ QI   I+GL 
Sbjct: 121 LSDKIDFKNLSLDKEKFQIWINQKLLEVTPIEFNLLDMFLTHQNHVFSREQIIEHIWGLT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
              V+   V+SHI  LR+K+R +       + +   +GY 
Sbjct: 181 -ADVDNRTVDSHIRNLREKMRKESFDVDSFLLTVYGVGYK 219


>gi|291612955|ref|YP_003523112.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583067|gb|ADE10725.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 242

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G+ G  +         + +  S   D+  ++  L   G   L
Sbjct: 10  ILIVDDDEDIRNLLADYLGEQGWLISTAQDGTAMQQVLDSTPIDLIVLDLTL--PGSDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I ++   +    +   + G DD + KP   RE+L R+  + RR   
Sbjct: 68  TLCRDLRARSAIPVIMLTARSAPLDRILGLEMGADDYLCKPFEPRELLVRIRNVLRRSGS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           +                  +               L   E R+L+ L+    + + + Q+
Sbjct: 128 AARVVPGTSTLWHFADWTLDENTRQLQNSAGLVVMLSGGEYRLLQALLERPNRALNRDQL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   G  +    +  ++ HIS+LR+KL +       + + R  GY +
Sbjct: 188 LTLTQGR-ETDPLDRSIDLHISRLRQKLGDDARAPRLIKTLRNEGYLL 234


>gi|239502568|ref|ZP_04661878.1| AdeR [Acinetobacter baumannii AB900]
          Length = 242

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G+ +    + +    + +S   D+  ++  L        
Sbjct: 15  ILVVEDEYDIGDIIEQYLKREGMRVIRAMNGKQAIEIHASQPIDLILLDIKL--PELNGW 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR   
Sbjct: 73  EVLSKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTHQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQI 173
           +   A         +         +          L   E +IL  ++    +   + ++
Sbjct: 133 NQQAAVKNLFYKNIEINTEIHSVYINQVDKKTLLNLTLTEYKILLLMINQPHRVFTRGEL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    L D    E  V+SH+SKLRKKL  +     + + R +GY +D
Sbjct: 193 MNQC--LPDSDALERTVDSHVSKLRKKLEEQGLEHMLINVRGVGYRLD 238


>gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +    +   +  +++  +  E+      SA  D+  ++  L       L
Sbjct: 3   ILLIEDEKYMAEAVAQVLRKNNYTVDLAHDGEYGLDCALSAIYDIIILDIML--PKMNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           ++ + +R      P+I +S     +  +   D+G DD + KP    E+LAR+      + 
Sbjct: 61  DVLKSLRREKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRKG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G I +  +  D     + + L  +E ++LE LM  +G  ++K  I   ++
Sbjct: 121 EIIPEGILSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E+N VE +IS LRKKL      + + + R LGY +
Sbjct: 181 G-FDGEAEDNHVEVYISFLRKKLAALGSTNTIQTIRGLGYML 221


>gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +      G +++     E    L S    D+  ++  L       L
Sbjct: 3   LLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPA--LDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA +  + ++ ++     +  +   D+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   +++    +   +  +   L R+E  IL YLM ++G+ + +  +   ++ 
Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
                   N V  HI+ LR+KLR+ +     +++   +GY +
Sbjct: 181 GT-VNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221


>gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
 gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L S     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A+S +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANSVLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   + +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSIDSKIVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNSREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVF 232


>gi|328944489|ref|ZP_08241951.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
 gi|327491073|gb|EGF22850.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
          Length = 246

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             +++D   +++  I    +    ++ F+          +    +  ++  L    G  +
Sbjct: 15  IYVVEDDVSIQEIEIIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNTI 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113
               R     S +P+I I+   +    +   D+G DD + KP    E       +L R  
Sbjct: 75  TRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRAQ 134

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +      +    G I +        V      L  +E  +L YLM + G    +  +
Sbjct: 135 TPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREVL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             A++G FD   E   V+ HI  LR+KL +      V + R +GY 
Sbjct: 195 MQAVWG-FDFEGESRTVDMHIKTLRQKLGDASC--YVHTVRGVGYC 237


>gi|169342185|ref|ZP_02863271.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169299669|gb|EDS81726.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G  +E  +  E    +  S   ++  ++  L        
Sbjct: 6   IFIIEDEEKIREELTKFLEKYGYVVESSDDFENIVDISLSCNPNMILLDINL--PYYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  SQVP+I ++   S    L   + G DD V KP + +     I + +   Y 
Sbjct: 64  YICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          ++      +   + EV  L + E +IL  L+ N+GK V++  I   +
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKTL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +E +++N +  ++++LR+K+        + +KR  GY +
Sbjct: 184 W-QSNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGYIL 225


>gi|145594141|ref|YP_001158438.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303478|gb|ABP54060.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 219

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  ++  ++             D   ++  L   G    
Sbjct: 3   LLVVEDEARLAAALHRGLQAEGFVVDVASTGPAGLDAARHGDYDAMVLDVML--PGLSGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  +  P++ +S         D  D G DD + KP  +  +LAR+ A+ RR  
Sbjct: 61  EVVRRLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T    R+    R     G    L  RE  +L+YLM   G  V+K ++   ++ 
Sbjct: 121 PERPAVLTVGDLRLDPARRRVTRDGAEVALTAREYALLDYLMRRPGTVVSKIELLDHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N VE ++  LR+KL    G D +++ R  GY +
Sbjct: 181 A-NIETAPNAVEVYVGYLRRKL----GRDRLETVRGAGYRL 216


>gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 243

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +           L  +   D+  ++      GE  L
Sbjct: 7   ILVVDDDHEIRDLLARFLAKHGLHVSTARDGAEMTKLLDAHGIDLVVLDLM--MPGEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA     P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SLTRRLRAQGCTLPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRAP 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------------PLPRRERRILEYLMANRGKRV 168
              + A           R      ++              L   E  +L   + +  + +
Sbjct: 125 AEGDAAAPTSGGGGHRLRFDGWVLDMATRDLTDPDGVVLTLSAGEFDLLRAFVEHPRRVL 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++ Q+     G      +   ++  +S+LR+ L  +      + + R  GY  
Sbjct: 185 SRDQLLDLARGRQAIPFD-RSIDIQVSRLRRXLNDDPKEPQLIKTVRGGGYLF 236


>gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 220

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +     A   + G  +    +             D+  ++           
Sbjct: 4   ILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKEAFDLIIMDIM--MPSMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
            L  +IR+ S  P++ ++        L  FD G DD + KP  +  +L RV        +
Sbjct: 62  TLTELIRSTSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRSNQ 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V   +   G I V ++  +    GE   L ++E  IL  L+ N+ K + +  I S ++
Sbjct: 122 KEVDKKKLRCGNISVNTETFEVVSAGETIELTKKEFDILVLLIRNQKKVITREMILSQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             F   V+ +++ +H+  LRKKL      + + + R  GY +D 
Sbjct: 182 D-FAAIVDTSIINTHMKNLRKKL----HTEKIRTIRGAGYKMDE 220


>gi|268609476|ref|ZP_06143203.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 220

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++    S E            +  ++  L        
Sbjct: 4   ILIVEDDKELSSLLTDFLRAEGYTVSAVESGERAVQFFERYGARLVVLDINL--PDMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R ++  P++ +S     +  L+  D G DD   +  +  +IL        + + 
Sbjct: 62  AVCSKLRENADTPILIVSARTDKEDKLNGLDLGADDY-IEKPYDIDILLAKIKGIFKRRY 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + +    +  E+ G++  L  +E  +L  L+ N+GK + K  +FS ++G  
Sbjct: 121 QRSMLSASGVVLNLANKTAEIDGKLVQLSAKEFDLLALLIENQGKALKKEYLFSTVWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           D   E   +  HI++LR+KL +       + +   +GY  
Sbjct: 180 DSDSELQTLHVHINRLRQKLGDDPKNARRLLTVWGVGYKF 219


>gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10]
 gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELQHENYETVVENNGRKGLEDALNQDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R     P+I ++   S+   +   D G DD + KP              R +  
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A    +               ++       G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASRVTVAKQKIVKFKNLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R +GY 
Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDVPGQPSYIKTVRGIGYM 229


>gi|94263464|ref|ZP_01287277.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456194|gb|EAT06333.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G  +E        E L ++   D+  ++  L       L
Sbjct: 6   ILVVDDDPSMLRLCQVVIQRQGWLIESAQDGGSAEGLLATRSFDLVVLDLNL--PDGDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +     VP + ++        +  F+ G  D + KP H  E++ R+  +    + 
Sbjct: 64  DIGRRLYQQG-VPFLLMTARDRPNERVAGFEVGAADYLTKPFHPNELIHRIRRVLGLRES 122

Query: 122 SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++                  +  G    L   E R+L  L+A  G+ V + ++   
Sbjct: 123 PTPASDRHHRLGAWLFDPEGGLLSDHNGRRVKLTTGESRLLATLLAAGGRVVDRDRLLQT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    + A     V+  IS+LRKKL +       + +   +GY +
Sbjct: 183 V-ARSEGAGHYRTVDVLISRLRKKLEDDPRHPALIITVTGIGYRL 226


>gi|332534928|ref|ZP_08410748.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035663|gb|EGI72153.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         + G +    +  +       +   ++  ++  L   G+  +
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSKVKTLNPNIVLLDIML--PGQDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+    P+I ++        +   + G  D + KP+  R +LAR+ A  R+   
Sbjct: 65  SVCRELRSFYNSPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQNNE 124

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N    +  I         ++ R+  +  +   +   E  +L YL +N G+ V++  +F 
Sbjct: 125 PNKPQVSQSIIQVGALSINTESRNVTLNEQDINISSAEYLLLHYLASNAGQVVSRDAVFK 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A  G  +    +  V+  IS LRKK   +    + + +    GY +
Sbjct: 185 ATKGR-EYDGLDRSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLL 229


>gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           +    R DV  ++  +   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKMAKDFRPDVLVLDVMI--PGFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IRA   + P + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  VLGRIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        +       D R+    GE   L   +  +L YLM N  + ++K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLRYLMENPKRVISKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 -NYDFGGQANIVELYISYLRKKV-DAVHPPMIHTVRGAGYVI 242


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVML--PGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|225027068|ref|ZP_03716260.1| hypothetical protein EUBHAL_01324 [Eubacterium hallii DSM 3353]
 gi|224955532|gb|EEG36741.1| hypothetical protein EUBHAL_01324 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIIFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           L  + V+EN +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYI--WN 224


>gi|209693817|ref|YP_002261745.1| osmolarity response regulator [Aliivibrio salmonicida LFI1238]
 gi|208007768|emb|CAQ77889.1| response regulator homolog OmpR [Aliivibrio salmonicida LFI1238]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R+++ + P++ ++        +   + G DD + KP + RE        +  +V
Sbjct: 65  SICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVF 232


>gi|51894349|ref|YP_077040.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858038|dbj|BAD42196.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F   G  +         +    +AR DV  ++  L        
Sbjct: 9   ILIVEDDEKIASILADEFVRYGYDVVLARDYANIKGEFVAARPDVVLMDINL--PRYDGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115
              R IR  S+VP++ IS        +   D G DD + KP +        +   R A  
Sbjct: 67  YWCRQIRTVSRVPILFISARSDQMDQVRAIDHGADDYITKPFNLELARAKVKAAIRRAYG 126

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    GP+ +               L  +E R+L  L    G+ V +  +  
Sbjct: 127 EYAAAGEADLLRVGPLVLDRATNRVSCGDRTVELSPKEFRLLWCLARRAGEIVGRETLLE 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +  V++N +  +++++R++L        +++KR  GY ++
Sbjct: 187 ELWDDTEF-VDDNTLTVNVTRVRRRLEELGLTGVIETKRGQGYRLN 231


>gi|148546454|ref|YP_001266556.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510512|gb|ABQ77372.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +               ++ D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            + R +R+  Q P++ ++        +   D G DD V KP+  R     +  +      
Sbjct: 66  SICRRVRSQYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSET 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G +R+ +  R+  +  ++  L   E  +L  L +N G+ + + QIF+A+ 
Sbjct: 126 VDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+     ++  ++  ISK+R K+ +       + + R  GY  
Sbjct: 186 GVG-YDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLF 227


>gi|332561563|ref|ZP_08415876.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|332274065|gb|EGJ19383.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +       + G +++    L   +   + A  D++ ++  L   G  + 
Sbjct: 13  ILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLP-DGLGIP 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +        P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR   
Sbjct: 72  FLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGG 131

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N     G   V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++  
Sbjct: 132 NPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F+  +E N +E ++S+LR+KL        +++ R LGY +
Sbjct: 191 FEAEIESNAIEVYVSRLRRKLD----HSVIETVRGLGYRL 226


>gi|313499723|gb|ADR61089.1| Two component heavy metal response transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV +      
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEE 223


>gi|262283306|ref|ZP_06061072.1| two-component system response regulator [Streptococcus sp.
           2_1_36FAA]
 gi|301300262|ref|ZP_07206472.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|262260797|gb|EEY79497.1| two-component system response regulator [Streptococcus sp.
           2_1_36FAA]
 gi|300852132|gb|EFK79806.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +         G S L    S +           D+  +   ++      
Sbjct: 8   ILILDDNPEILEIVQESLSIAGFSNLTSVQSQKEALEQFEEKSFDLVIL--DIMLPEGSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP++ +S    ++     F+ G DD + KP   R++  R+ +I +R  
Sbjct: 66  FEVLKGIRKTSMVPVLFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    P       +    +G+    L  +E  IL+ L  N+ + V   Q+   ++G
Sbjct: 126 PEKEDTLVLPACQVYFSQALITKGKLEIQLTAKEYSILKVLYDNKNRIVTFDQLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           L      +N + +HI K+R+K+  N    + + + + LGY +  N
Sbjct: 186 L-QYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN 229


>gi|228960716|ref|ZP_04122355.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798932|gb|EEM45907.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIVGILEEHLERYGYQSFRASDLRQIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++           L       +  ++          ++
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIM--MPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ET    V          +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGTLILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 228


>gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGL--PGISGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL  R+       P++ ++   + Q  ++   +G DD + KP    E+ AR+ A + R  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL  + GF P+D+ R LGY  
Sbjct: 180 PGDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGYLF 220


>gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1]
 gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum
           aromaticum EbN1]
          Length = 248

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A ++D       + G +++        +        D+  ++  L   GE  L 
Sbjct: 13  LLVDDDARLRDLLSRYLQEQGFTVKAVVDAPSMDRALHREHFDLMVLDLML--PGEDGLT 70

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  + +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 71  ICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHAVMRRQPP 130

Query: 122 SNNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S   A T    + S GR              +   L   E  +L+ L+ +  + +++ ++
Sbjct: 131 SLPGAPTSEDEIVSFGRVRVNLGVRSLTRDEDEIALTTGEFSLLKVLLQHPRQPLSRDKL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                G  +  V +  ++  +S+LRK + +       + +    GY  
Sbjct: 191 MELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 237


>gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  +   DV  I+  L       L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHTADVAYDGDTGYTLAETVNYDVMIIDRML--PYRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIITELRAKGIKTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +  G+   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +      +  + L       +  ++  L   GE  L 
Sbjct: 9   LVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLML--PGEDGLS 66

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R   +Q+P++ ++        +   + G DD + KP + RE        +  +  
Sbjct: 67  ICRRLRQKENQIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRQSK 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +        N  + G   +    R+         L   E  +L+ L+++  + +++ ++
Sbjct: 127 EVPGAPSAEENLIKFGKFTLNLATREMSEGDNTVSLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 187 MNLARGR-DYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVF 233


>gi|291446359|ref|ZP_06585749.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349306|gb|EFE76210.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 247

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  ++             +   D+  ++  L       + 
Sbjct: 19  LVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPA--LDGIG 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------------- 108
           L   IR  S VP++ +S        +   ++G DD V KP+    +              
Sbjct: 77  LCHRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRRTTFG 136

Query: 109 -LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                     R +  ++    G + V + G +    G    L   E R+L    A  G  
Sbjct: 137 PDGPAPEKSGRDRAPDHILTFGDLTVDTLGMEVRRAGVTVSLTPTELRLLLEFAAAPGSV 196

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++   ++  +    +  VV+  + +LRKK+    G   +++ R  GY +
Sbjct: 197 LDRRRLLRDVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 244


>gi|257438486|ref|ZP_05614241.1| DNA-binding response regulator PhoP [Faecalibacterium prausnitzii
           A2-165]
 gi|257199065|gb|EEU97349.1| DNA-binding response regulator PhoP [Faecalibacterium prausnitzii
           A2-165]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD A +           G   +    S        ++ + ++  ++  L       
Sbjct: 9   LLLVDDNAELLALLCEQLRGAGYGHIRTAQSCGSARACFAAEQPELMILDINL--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R +RA + VP + +    +    L     G DD + KP   +E+L RV  I +R  
Sbjct: 67  FSLFRALRAKADVPALFLFARDADADRLFGLGLGADDYLTKPFLMQELLLRVQHILQRAY 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQI 173
            +             +         V         L   E  +L  L  NRG  V    +
Sbjct: 127 RAELSRTKPAPLQLGERCVDLNDAIVTLPEGKTLALTATELALLRKLAENRGHIVTYDAL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G  D    EN +  HI  LR+KL         + + R +GY +
Sbjct: 187 CAAVWGA-DYYGYENSLGVHIRHLREKLEAEPGAPQFLRTVRGIGYKL 233


>gi|182413136|ref|YP_001818202.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840350|gb|ACB74602.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 240

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  +     +G       +       + +    V+ +   +        
Sbjct: 8   ILVVEDEAPIAETIVYALQTEGFVPRWVTTGRAALT-ELTIPPAVALVILDIGLPDANGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           ++ R I+  +  P+I ++   S    +   + G DD + KP   RE+ ARV         
Sbjct: 67  DVFRQIQQRAPTPVIFLTARASEVDRIVGLELGADDYLTKPFSPRELTARVRAVLRRVQA 126

Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +   A         +      +G+   L R E R+L  L+A  G+  ++
Sbjct: 127 VPTPAGPVAANAAPPATAKVWTHDVERCRISYRGQPLTLTRNEYRLLAVLLAAPGRVFSR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+ +  +     A++   V++H+  +R KLR+     DP+ + R LGYS+
Sbjct: 187 EQLMAQAWPDPGAALD-RTVDAHVKTVRAKLRDIASDADPILTHRGLGYSL 236


>gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli]
 gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG        G +++     +       +   DV  ++  L       L
Sbjct: 3   ILLVEDDGSLGDGIQKGLKQYGYTVDWLTDGQTALSSIKTESFDVILLDLNL--PKLSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            + R +RA     P++ ++   S++  +   DSG DD  +K     +      R      
Sbjct: 61  SVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++       I +        ++G+V  L RRE  +L+ L+ N G  V++  +   +
Sbjct: 121 SNNRASPLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDSLNQCL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           YG  D  ++ N +E H+  LRKKL        + + R +GY  + 
Sbjct: 181 YGWED-DIDSNTLEVHVHNLRKKL---AHTHFIRTIRGVGYMAEK 221


>gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
 gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 85/234 (36%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++ +D    +     L G +G  +           +  S + D+  ++  +    G  V
Sbjct: 4   ILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGFDV 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R      + P+I I+        +   + G DD ++KP    E++ARV A+ RR +
Sbjct: 64  CRLLRA--EDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRRCQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------------PLPRRERRILEYLMANRGKRV 168
            + ++             + +                   L  RE +IL  L    G  V
Sbjct: 122 PAPSQTPIAKDPTTHITFNMDDLQITPSKLRATRGETTIELTARELQILILLHDADGDVV 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  +F   +G  +       V+  +S+LRK++  +      + +   LGY  +
Sbjct: 182 HRQTLFQECWG-HNRVPNSRTVDQTVSQLRKRIERDPKHPRIIQTVYGLGYRYE 234


>gi|113968625|ref|YP_732418.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049227|ref|YP_739777.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117918739|ref|YP_867931.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883309|gb|ABI37361.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890669|gb|ABI44720.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117611071|gb|ABK46525.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +         +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRML--PQLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118
           +L   +RA     P++ +S    +   +    +G DD + KP    E  + A       +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++    R+  + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SVPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 241

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +    +   + +    L ++   D+  ++  L       +E
Sbjct: 10  LVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGL--PDMDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115
           + R IR+ S VP+I IS     +  +   D G DD + KP          R  + RV  I
Sbjct: 68  VIRKIRSWSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRATIRRVQYI 127

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +  + G + +       +V G    L   E  +L  L  N GK +    I  
Sbjct: 128 MHTDNTNESMFQNGDLMIDYSAGVVKVSGVEIHLMPLEYSLLCLLAQNVGKVLTYQFILE 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++       + + +  +++ LRKKL  +K     + +   +GY +
Sbjct: 188 KVW-PNGIGSDISSLRVYMTSLRKKLEKDKANQTYIQTHIGVGYRM 232


>gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A++ +        +G+ +      E       S + DV  +++         L+
Sbjct: 5   LLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQYDVVVLDSM--MPKMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116
           + + +R  S +P+I ++        +   + G DD V KP   RE+LAR+          
Sbjct: 63  VLKTVRTQSSIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRRAQHT 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +N      + +    R   V      L   E  +LE LM + G+ V+K  +   
Sbjct: 123 HDQNNISNSISVSNVTLHPSKRQATVGDAPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                    +   ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-RSIDVHISSIRHKLGDPS---LIQTVRGLGYLFVKN 225


>gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
 gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
          Length = 220

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTL--PKLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R++ Q  P++ ++   +L   +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +   
Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-SS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 WDEEISSGALDVHIYNLRQKL----GKQFIRTIHGVGYAL 215


>gi|302387089|ref|YP_003822911.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197717|gb|ADL05288.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG   L    G  L+   ++     + + ++ D+  ++  L        
Sbjct: 4   ILLLEDDLSLIDGLSCLLKRQGFELDIARTVREANTIWTDSKYDLLILDVSL--PDGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
           E+ + +R  S+VP+I ++        +   D G DD + KP         +  +    + 
Sbjct: 62  EVCQKVRQVSKVPIIFLTASDEELNIVTGLDIGGDDYITKPFKLGVLLSRINALLRRAKN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +    +  I+V          G++  L   E R+L  LM N    ++K +I   ++
Sbjct: 122 FGEHDTEIISNGIKVLLLQGQAYKGGQLLDLTTAEYRLLCLLMQNPNIILSKEKILEKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              +  V++N +  +I +LR K+  N      + + R +GY  + 
Sbjct: 182 DGDESYVDDNTLAVYIRRLRIKIEQNPGEPQMLLTVRGMGYKWNV 226


>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G+ +      +           D   ++  L   G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLML--PGVDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I IS   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A           + +    R+  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  N      + +    GY  
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKF 231


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTITSGPFLLNIVEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101]
 gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G +++         +  SS   DV  I+  L       L
Sbjct: 3   LLVVEDDATTGSYIARGLREEGHTVDLVPHGREGLFQASSGSYDVLVIDRML--PEVDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR +
Sbjct: 61  TLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRPQ 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V             +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 VLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFDRELIHTVRGAGYRID 222


>gi|302338300|ref|YP_003803506.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635485|gb|ADK80912.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   V           G       + E       S   D+  ++  L G  G +V
Sbjct: 12  ILVVDDEEHVVKLLSMNLTSRGYDCLCAYTGEEGLEQARSHHPDLIILDVMLPGIDGIEV 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             L +       +P++ +S        +   + G DD + KP   RE+  RV A  R+  
Sbjct: 72  CRLLKSDPRTQLIPVLMLSAKSEGIDKIHGLEGGADDYITKPFSLRELFLRVEASLRQIA 131

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +    G + + ++       GE   L   E +IL  L+ ++G+ V++  +
Sbjct: 132 LLTGAWSGRPHMLFIGSLSIDTERYFASNGGEKIDLTPAEFKILNMLVKHQGEAVSRPLM 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  ++           V+ H+  +RKKL +       +++    GY I
Sbjct: 192 YRELFDKDPADAG-RSVDVHLRNIRKKLNDAGVTGCRIETVHGSGYRI 238


>gi|294852839|ref|ZP_06793512.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294821428|gb|EFG38427.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 241

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    S             D+  ++      GE  +
Sbjct: 22  LLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEVRRKLEGIDFDLLILDVM--MPGETGV 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP++ ++      + +D   +G DD + KP   RE+  R+  I RR   
Sbjct: 80  SLTRSLREQKNVPILILTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAP 139

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       P   F   R+ +   E   L  RE+ I+       G+ + + ++    
Sbjct: 140 PAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGETIPRHELT--- 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               D  V E  ++  I++LR+K+  +      + + R +GY +
Sbjct: 197 --GQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKL 238


>gi|238059052|ref|ZP_04603761.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880863|gb|EEP69691.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++   +    D G ++   ++           R D+  ++  L        
Sbjct: 4   LLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALDNRPDLVVLDLGL--PDLDGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ AR+ A+ RR   
Sbjct: 62  ELLRMLRAVSAVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARIRAVLRRGAA 121

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   +    RV    R   + G    L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 GAGAGDPALVVGGLRVDPRARQVTLDGVAVELTPREFDLLHHLAARPGEVVTKRELLTEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +      +  V+ H+S LR+KL  N      + + R +G  ++
Sbjct: 182 WQIP-YGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRLE 225


>gi|237797944|ref|ZP_04586405.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020795|gb|EGI00852.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 246

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G       ++E  + L +    ++  ++  L   GE  L
Sbjct: 13  ILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLML--PGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A++QVP+I ++      + +   + G DD + KP +  E++ARV A+ RR  
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 121 VSNNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                A        S G           +   EV  L   E  +L+ L+ +  + + + +
Sbjct: 131 APVPGAPGSEDESVSFGDYVLSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 191 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  +++D  +      G ++   ++ E        A+ D       ++  G    
Sbjct: 4   ILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGIDGF 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R   S + +I ++        +     G DD V KP    E++ARV AI+RR+ 
Sbjct: 64  EVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHRRVN 123

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  N+ +        P  +    R     G    L + E +I+E  M N+   + +T I 
Sbjct: 124 MIANQPQQVKSIVSGPFELNPKSRILTKNGVPVDLTQVEYQIMELFMKNQNVALDRTHIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + I+G  +   +  +V+ +I +LR K+ +       + +    GY  +
Sbjct: 184 NEIWG-DNYYGDVKIVDVNIRRLRMKVEDEPSSPKYILTIWGFGYKWN 230


>gi|319934759|ref|ZP_08009204.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1]
 gi|319810136|gb|EFW06498.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++      F    + +             +++  D+  ++      G    
Sbjct: 5   ILLIEDDIDIRSIIKTYFKKRDIVIIEAIDGFDGLSKLNNST-DLILLDIM--MPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLK 120
           E+   IR  SQ P++ +S     +  L  F  G DD ++KP     + A+  A   R+  
Sbjct: 62  EVCYQIRQSSQCPIVFMSALSEEENQLKAFQYGGDDYISKPFLPSVLYAKCLAICKRQQN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +        ++ E   L  +E  +LEYL  N  + +++ QI  A++G 
Sbjct: 122 TQSETKNFGKLNIDYLNHQVWLENEELSLTHKEYLLLEYLTKNAYQLLSREQILDALWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   +   V+++I K+RKKL    G   + +   +GY  
Sbjct: 181 YDYYGDARAVDTYIKKVRKKLGKYQG--YIQTVFKVGYVF 218


>gi|294624528|ref|ZP_06703207.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665307|ref|ZP_06730600.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601182|gb|EFF45240.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604943|gb|EFF48301.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 13  LVVEDEAAIADTVLYALRSEGYAPEHCLLGRDALTRLRADPADVVVLDVGL--PDINGFE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R+ S+VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 71  VCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRHAG 130

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G   +  +G        + PL R E  +L  L+   G  +++TQ+    +
Sbjct: 131 AAAESGWQPHGAFAIDREGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRTQLMDRGW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
               ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 191 DASADSAD-RTVDTHIKTLRGKLRLAGVPADPIRTHRGLGYALEV 234


>gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +    +      L    + ++  ++           
Sbjct: 4   ILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAK-KQPELIVLDIM--MPEMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113
           E+ R IR     P++ +S   +    +     G DD ++KP             +     
Sbjct: 61  EVCRKIRDELLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + Y   +    +     + +       ++ GE  PL +RE  I+E L  + G+  ++  I
Sbjct: 121 SQYINAEKKRTKLYFNELGIDLLEHSVKISGEAIPLSKREYDIVELLALHAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +  ++G +D   +   V  HI K+RKK        + + +   +GY  +
Sbjct: 181 YERVWG-YDLEGDSYTVVEHIRKIRKKFSEVSPDTEYISTVWGIGYKWN 228


>gi|240850128|ref|YP_002971521.1| two-component response regulator [Bartonella grahamii as4aup]
 gi|240267251|gb|ACS50839.1| two-component response regulator [Bartonella grahamii as4aup]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S++     +    L ++   DV  ++  L+ +    L
Sbjct: 3   ILVIEDDHETGHYLEKAFLEVGHSVDVAYDGDTGYALATTENYDVMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIIAELRAKGNETPVLILSALGQVNDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +       L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|229198569|ref|ZP_04325271.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584851|gb|EEK42967.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASTAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|182417343|ref|ZP_02948678.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668463|ref|ZP_04528447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378773|gb|EDT76295.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656811|gb|EEP54367.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   ++        + G  +E FN+ E           D+  ++      G   
Sbjct: 4   LIYIADDEDNIRYLVKTFLENTGYEVEDFNNGELLLEKFQIKPCDMVILDVM--MPGSDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I ++   +    +     G DD   KP     ++ RV AI+RR++
Sbjct: 62  FEICKKIREESIVPIIMLTARDTDIDYITGITLGSDDYFTKPFSPMSLVMRVKAIFRRIE 121

Query: 121 VSNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +N      I           +    +    + E   L   E  +L+YL  N  + V++
Sbjct: 122 FEHNINIEKNIPISELKFGNITINLHNKIVTFKDENLDLTPNEYNLLKYLFENCERAVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   I+G +D  VE    +  + +LRKK+        +++    G+ +
Sbjct: 182 EELLDKIWG-YDSEVETRAADDTVKRLRKKI--SHTDVSIETVWGFGFRL 228


>gi|86750553|ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573581|gb|ABD08138.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D     D  +  F + G   +  +  E    L  S   DV  I+  L    G  V
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKRDGLSV 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R     ++ P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 78  IGTLR--DKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +  D     V      L    RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRGKIDKGFDRPLLHTIRGAGYMI 236


>gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 7/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD A +          +G+  +   +        +        +   ++  G    +
Sbjct: 6   LIIDDDAELCALMKKCIKQEGLEADITYTGRDGLTKIAEQNGAYCLVILDVMLPGINGFQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
           +   IR  S VP++ ++        +     G DD + KP    E++AR           
Sbjct: 66  VLSEIRKGSMVPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIRRYTTF 125

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      + +  + R   V GE   L  +E  +L +L +N+G+   K QI++ +
Sbjct: 126 NQSTQLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQIYTQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           +   + A ++N + S ISKLRKK+   +     + +   +GY  + 
Sbjct: 186 W-EGEYAFDDNNIMSFISKLRKKIEPDVEHPFYILTVHGVGYRFNK 230


>gi|319761046|ref|YP_004124983.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330822904|ref|YP_004386207.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317115607|gb|ADU98095.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329308276|gb|AEB82691.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +        G  G+ +            LQ S   D+  ++  L       
Sbjct: 5   LLMIEDDHRLAQMVGEYLGQSGLQVTHMADGTSGLAQLQGSELPDLVILDLML--PDMDG 62

Query: 61  LELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           LE+ R IRA      QVP++ ++        +   + G DD + KP   RE+LAR+ AI 
Sbjct: 63  LEVCRRIRALPGAAAQVPVLMLTAKGDPMDRVIGLEIGADDYLPKPFEPRELLARIRAIL 122

Query: 117 RRLKVSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR +          +R        D R   V GE   L   +  +L  +    G+ + + 
Sbjct: 123 RRREAGAQPPANHLLRFGSLEIDRDARTITVGGEPAELTSYQFDLLVTMAERAGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 183 QIMEAVRGRELEAFD-RSIDVHMGRIRAAIEADPKNPRRILTVRGVGYVF 231


>gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +    +  D+   ++   + E   +L      DV  ++  L        
Sbjct: 3   LLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVML--PVIDGF 59

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           E+ + IR      P++ ++   SL+  +   D G DD + KP    E+ AR+ A      
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V GE   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYML 220


>gi|307329139|ref|ZP_07608305.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885169|gb|EFN16189.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 221

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +          WL      D+  ++  L   G    
Sbjct: 3   ILVIEDDEALGASLTWGLKAEGYVVCLTADGAEGLWLAQEHDFDLIVLDVML--PGLDGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P++ ++   +     +  D G DD + KP  +  +LA + A+ RR  
Sbjct: 61  QICARLREAGKWTPILMLTAMDAPLDQAEGLDLGADDYLTKPFSYPVLLAHLRALLRRST 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G + +          G    L   E  +LEYL+   G+ V+K ++    + 
Sbjct: 121 RERPAQLRSGELTLDPATHAVHFAGRPLALTPGEASVLEYLLRAEGRTVSKAELLEHCWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   A +  VVE  I  LR+K         +++ R  GY ID
Sbjct: 181 MASRA-DPAVVEVRIHHLRRK----TDASVIETVRGRGYRID 217


>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +    L       +   N+             DV  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQLQQYPFDVVLLDLGLPM--MDGM 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR+ +  +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 62  QVLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 121

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + ++  +         D    + +G+   L  RE  IL  L+++  K  +KT +  
Sbjct: 122 ALKQQKQSQTLSYAGLELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y L D  +  N +E +I  LR KL    G D + + R LGY +
Sbjct: 182 KLYDL-DSEINSNTIEVYIHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|183985285|ref|YP_001853576.1| two-component transcriptional regulatory protein TcrX
           [Mycobacterium marinum M]
 gi|183178611|gb|ACC43721.1| two-component transcriptional regulatory protein TcrX
           [Mycobacterium marinum M]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ +        +G ++   +          + R DV  ++  L       LE
Sbjct: 13  LVVDDEPVLAEMVSMALRYEGWNIATASDGASAIASARAERPDVVVLDVML--PDMSGLE 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R  +  +P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 71  VLHRLRKENPALPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 130

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 131 TTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDRV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 191 WS-YDFGGRSNIVELYISYLRKKI-DNGREPMIHTLRGAGYVL 231


>gi|160936956|ref|ZP_02084320.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440146|gb|EDP17893.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC
           BAA-613]
          Length = 221

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +         G         EF   +  +   D+  ++  L       +
Sbjct: 4   ILIAEDNKAISNLIKTHLSFAGYDTSQVYDGEFALEILEAEPFDLLILDLML--PKVSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   ++   Q+P+I ++    L + +     G DD + KP    ++LARV A+ RR + 
Sbjct: 62  DILARVKDC-QMPIIVVTALDDLSSKVQCLQVGADDYITKPFDSMDLLARVGAVLRRCRR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I V  D       G+   L  +E  +L YL +N  K + + +I S ++G +
Sbjct: 121 RPMSLNVRNISVDPDQHRVLKDGKEIELTPKEFDLLYYLCSNCDKVLTRKEILSDVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E   V+ HI +LRKKL  +     + +   +GY +
Sbjct: 180 NYVGETRTVDIHIQRLRKKLDWEGA---IQTITKVGYLL 215


>gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D +++ DG       +G +++        +   +    D+  ++  L    G +V
Sbjct: 3   ILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHLPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R    +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 63  LRRLRA--RNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                            GR   V  +   L  RE  +LE L+A  G+ V+KTQ+   +  
Sbjct: 121 GGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKLEPSGVK--IITVRGLGYCLE 219


>gi|86146719|ref|ZP_01065040.1| putative two-component response regulator [Vibrio sp. MED222]
 gi|85835566|gb|EAQ53703.1| putative two-component response regulator [Vibrio sp. MED222]
          Length = 243

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +E  N++E  + L    + D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHHVERANTIEKAQGLYLDGQFDLVVLDRGL--PDGDGL 69

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------A 110
           +  R++R      P++ ++   +    +   ++GVDD + KP    E            +
Sbjct: 70  DFCRMLRQQEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLS 129

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            V +  +    + +    G + +  +     +  +  PL   E  +L +L    G+  +K
Sbjct: 130 HVESATQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++         + V S +++LR KL       D + +   +GY  +
Sbjct: 190 DELLEHVWNTHHS-GYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFE 240


>gi|326386033|ref|ZP_08207657.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209258|gb|EGD60051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 258

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D              +  ++             ++ R D + ++  L   G   L
Sbjct: 33  ILVVEDDTETAALIRTALEAEHHTVVHLADGRTALDRLAAERFDAATVDRML--PGLDGL 90

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118
            L  R+       P++ IS    +   +    +G DD                V     R
Sbjct: 91  TLVARMRARQITTPVLVISALGDVDERIAGLRAGGDDYLAKPFSPAEMVTRIEVLLRRAR 150

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     GP+ +    R   V GE   L  +E R+LE+L+ + G  VA+  IF  ++
Sbjct: 151 DYPEDGFLRAGPLELDLVKRKAWVMGEAVELLNKEFRLLEFLVRHAGHVVARQVIFEQVW 210

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +     +N++  HI++LR+KL       P+++ +  GY +
Sbjct: 211 GRY-FEASDNLINVHIARLRRKLERADWPAPIETIKGEGYRL 251


>gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda
           FL6-60]
 gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda]
 gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F   +       SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSL--PGIDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A I R   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSH----FIRTVHGVGYTL 216


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|186472759|ref|YP_001860101.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195091|gb|ACC73055.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 247

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +  + +             +    +  ++  L G+G   LE
Sbjct: 14  LIVEDEPKLSALLTDYLRAENFNTQVIEDGRKVIASVRANPPSLILLDLMLPGRG--GLE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S VP+I ++        L   + G DD V KP   RE++ARV AI RR+   
Sbjct: 72  ICRELRTFSDVPVIILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVDLL 131

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + +  +     + G+   L   E R+L  L +  G+  ++  +   
Sbjct: 132 PGAARAGVEPVASRLAIDVERHVASLDGKDLNLTPIETRLLALLNSTPGRIYSRDHLLRQ 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SH+  LR+KL+  +   D + S   +GY ++ 
Sbjct: 192 LYDDH-RVVADRTVDSHVKNLRRKLQTVRPDHDMIRSIYGVGYRLEV 237


>gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + +         +G      ++ +       +    +   +  +        
Sbjct: 4   ILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPM--MDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A   VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR  
Sbjct: 62  QLIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRAN 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +               D    +   +    P++E R+L +L++   +   + ++  +I+G
Sbjct: 122 IVAQHQLIIGNTCLNEDELSLKYFEQEIIFPQKEFRVLFHLLSYPNRIFTRLELLDSIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D  ++E VV++ I+K+R+K+ +   F  +++ R +GY 
Sbjct: 182 M-DTDLDERVVDACINKIRRKVEHLPDFK-IETVRGVGYR 219


>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
           [Arthrospira platensis NIES-39]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G +++          L  +   D+  ++  L    +  L
Sbjct: 3   ILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWML--PHQSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
           E+   +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LAR         
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V++NR + G ++   + +      +   L  +E ++L+YLM + G+ +  T+I  
Sbjct: 121 ILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLQYLMRHPGQLLTHTEIHQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D+    NV+ + I  LR+K+        V +    GY  
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIELPGAVPLVHTVYGKGYRF 225


>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                  D   ++  L         
Sbjct: 22  LVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVML--PDTDGFA 79

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116
           + R + +    V ++ ++   +++  +    +G DD V KP    E++AR       A  
Sbjct: 80  VLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAGL 139

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R      R   G + +  D R+    GE+  L   E  +L +LM N  + ++K QI   
Sbjct: 140 ARQLDEGPRLTVGDLVMDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQILDR 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     +VVE +IS LRKK+ +      + + R  GY I
Sbjct: 200 VWS-YDFGGRAHVVELYISYLRKKV-DAGREPLIHTVRGAGYVI 241


>gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
 gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          DG  +    +      +       +  ++          +
Sbjct: 4   ILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKEDIHLVLMDIM--MPEMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP+I ++        +     G DD V KP +  E+ ARV +  RR   
Sbjct: 62  TAMLKIREVSNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRRYMK 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    G I +    ++  + G+   L R E  IL+ LM + G+  +  +I+ 
Sbjct: 122 LGGGTVRPDTIVIGGIELNDVTKEVTLDGDKVQLTRTEYDILKLLMQHPGQVFSPNEIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +    EN V  HI  LR+K+  N      +      GY ++ 
Sbjct: 182 KVW-NDNPFRNENTVAVHIRHLREKVEYNPAEPRHLKVVWGRGYKMEV 228


>gi|206975972|ref|ZP_03236882.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961929|ref|YP_002340499.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|206745724|gb|EDZ57121.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066754|gb|ACJ81004.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
 gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +              ++     E   +L  + + DV  I+  L       ++
Sbjct: 4   LLVEDDKKLAKIIEKGLKRQNFRVDVAEDGEEGLYLARNNKYDVMIIDWML--PKLSGID 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +R         I    S         S  DD + KP    E++AR+ A++RR K  
Sbjct: 62  LIKTLRKEDINTPTLILTAKSDLDDKVEGLSVADDYLTKPFEFEELIARLKALFRRNKKL 121

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      +  D ++ +  G+   L  ++  +L+ LM N+ K V    I   ++   
Sbjct: 122 PENIIKVGDLEMNLDTKEVKRAGKPIELTAKQFELLKLLMINKNKIVTPEMIEENLW-EM 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  + NV+ +HIS LRKK+      + + + R +GY I
Sbjct: 181 NEERDSNVITAHISYLRKKIDKGFDKELLKTIRGMGYKI 219


>gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +              ++             +   D+  ++  L       +
Sbjct: 3   ILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLML--PRLDGI 60

Query: 62  ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L + +RA +    I  ++   +    +   D+G DD + KP    E+ AR+ A   R  
Sbjct: 61  TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G +++           +   L  +E  ILE  + N  + + ++ I   ++ 
Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               + EE  V++HI+ LRKKLR      D +++   +GY +
Sbjct: 181 FDKLSGEE-TVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221


>gi|329904416|ref|ZP_08273802.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547984|gb|EGF32724.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 218

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 85/218 (38%), Gaps = 4/218 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D     D       ++G  ++          L      D+  ++  L   G    E+ +
Sbjct: 2   EDEPKTGDYLRKGLQENGYVVDLARDGTTGLHLAVQEDYDLIVLDVML--PGIDGWEVLK 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R      ++ ++    +   +   + G DD + KP    E+LAR+  + RR       
Sbjct: 60  KLRETKATAVLFLTSRDDVNDRVKGLELGADDYLIKPFAFVELLARIRTVLRRNPQREAD 119

Query: 126 AETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                   +    R     G+   L  +E  +L  L+  +G+ ++++ I S ++ + +  
Sbjct: 120 TMNVADLEIDVLKRRVIRDGQRIDLTAKEFALLHLLVRRQGEVLSRSLIASQVWDM-NFD 178

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + NVV+  I +LR K+ +      V + R +GY  + 
Sbjct: 179 SDTNVVDVAIRRLRAKVDDPFPNKLVHTIRGMGYLFEE 216


>gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
 gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +      L  +     + +   L+  G   L
Sbjct: 9   ILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEP--ALLLLDLMLPGISGL 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           EL + +R   + VP++ ++    +   +     G DD + KP    E    +  +    R
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N  +   + +  +       G+  PL  +E   LE LM+  G+  ++ +I S +
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +E    N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 187 WGA-NEDPLTNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229


>gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CMR15]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +      L        + +   L+  G   L
Sbjct: 3   ILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARGGEP--ALLLLDLMLPGMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           EL + +R   + VP++ ++    +   +     G DD + KP    E    +  +    R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N  +   + +  +       G+   L  +E   LE LM+  G+  ++ +I S +
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +E    N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 181 WGA-NEDPLTNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223


>gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G +++     E  E L  S   D+  ++  L        
Sbjct: 3   LLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSYDLIVLDINL--PKIDGF 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L ++I R +  V +I ++    ++  +   D G +D + KP H  E+ AR+ + + R+ 
Sbjct: 61  TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I      +    +G+   L  +E  ILEYL+ N+G  +++ ++   ++ 
Sbjct: 121 LQEDTVLSAQGISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELLEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                   N V  H+S LR+KL+  LG + + ++   GY ID 
Sbjct: 181 GDMNEF-SNTVRVHVSALRRKLKESLGKNIIRNEIGKGYIIDE 222


>gi|168213386|ref|ZP_02639011.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715170|gb|EDT27352.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G  +E  +  E    +  S   ++  ++  L        
Sbjct: 6   IFIIEDEEKIREELTKFLEKYGYFVESSDDFENIVDISLSCNPNMILLDINL--PYYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  SQVP+I ++   S    L   + G DD V KP + +     I + +   Y 
Sbjct: 64  YICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          ++      +   + EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +E +++N +  ++++LR+K+        + +KR  GY +
Sbjct: 184 W-QSNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGYIL 225


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A++ D        +G                +S   DV  ++          LE
Sbjct: 14  LVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDV--QMPRMDGLE 71

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
               +RA   ++P++ ++   ++   +    +G DD V KP    E+ ARV        R
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++   +   + +  D  D    GE   L   E  +L YLM N G  ++K +I  A+
Sbjct: 132 TQQAASTVLQVADLTLDVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+        + + R  GY +
Sbjct: 192 WS-YDFGGQVNVVELYISYLRKKIDAD-RPALIRTVRGAGYIM 232


>gi|150391046|ref|YP_001321095.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950908|gb|ABR49436.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G + E   +      L  S   D+  ++  L       +
Sbjct: 7   LLIIEDDKYILNFISLSLKTSGYAFETARTGLEGMSLFYSHHPDIILLDLGL--PDIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  SQVP++ +S        +   D G DD + KP H  E++AR+  + R+LK 
Sbjct: 65  DVIKSIRMISQVPILIVSARGQENEKIAALDEGADDYITKPFHMGELMARIRVVQRKLKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         ++     D E +          +   E ++L  L+AN+GK +    I   
Sbjct: 125 AMQPENIEIFQMDYLTIDYEKRIVLVDNNEVHVTPIEYKLLLLLVANKGKVLTHNYILKE 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G + E  +   +   ++ LR+K+  +K     + ++  +GY  
Sbjct: 185 IWG-YGETGDSKSIRVFMANLRRKIEKDKASPRFILTEVGVGYRF 228


>gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120]
 gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD     D       ++G ++           L    +  +  ++          L
Sbjct: 7   ILIADDDXXXXDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113
           E+ R++R +    P++ +S        +    +G DD + KP +        + IL R+ 
Sbjct: 65  EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 124

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + +   VS ++   GPI V        V G+   L   E  IL  L +  G+  +   I
Sbjct: 125 QMSQVEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTXEFDILFLLASEPGRVFSSEYI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           F  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 185 FEKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232


>gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 8   ILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVML--PDIDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 66  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 125

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 126 LQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 186 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224


>gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
 gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E           D+  ++          +
Sbjct: 6   ILVCDDDKEIVEAIEIYLTQEGYEVLKAYDGEEAIQTLKKEHVDLLIMDVM--MPRLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++AR  +  RR   
Sbjct: 64  RATLKIREENSLPIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRRYTQ 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  +     V+  G               E   L   E  IL  L+ N+GK  +  QI
Sbjct: 124 LGSTVQDEKKEVYEVGGLSINDELKEVTVDGESVRLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 184 YENIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 232


>gi|182419345|ref|ZP_02950597.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666330|ref|ZP_04526315.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376676|gb|EDT74248.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657529|gb|EEP55084.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        + +++           +    +  +  ++          + 
Sbjct: 5   LVVDDEKEIRDAIEIYLRGENLNVLKAEDGLKALDILEEEKVHLIILDVM--MPKLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR +  
Sbjct: 63  TCLKIRETENLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRRYEKP 122

Query: 123 NNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  E   I       + +  +   V+GE       E +IL  L +N GK  +  +I+  
Sbjct: 123 LNVEEGKDIIKVKDLVIDTIAKKITVRGEEIKATATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++        EN V  HI ++R+K+  N    + +     +GY I+ 
Sbjct: 183 VW-EEIFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEK 228


>gi|148997681|ref|ZP_01825245.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147756180|gb|EDK63222.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V K    + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKLFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|90021593|ref|YP_527420.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951193|gb|ABD81208.1| Heavy metal response regulator [Saccharophagus degradans 2-40]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  +    +      L  +   D+  ++  L   G    
Sbjct: 3   LLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVG--GW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + IR      P++ ++   S+   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQSIRESGCQAPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +          G    L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRSKIDEGFEPKLIHTVRGMGYKLDV 223


>gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
 gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D +       G  +   +       +      D+   +           
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIM--MPRMDGY 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +       P + I+   S Q  +     G DD + KP   RE++ RV  I RRL 
Sbjct: 63  DLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLH 122

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +R+     + +V      L  +   +L  L +N  +  +KT ++  ++
Sbjct: 123 RGGETEVVSLGNLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSIDW 222
              D   + N +  HI  LR++L          + +   LGY I+ 
Sbjct: 183 -QEDYVDDTNTLNVHIHALRQELAKHASSETPTIKTVWGLGYKIEK 227


>gi|307129734|ref|YP_003881750.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
 gi|306527263|gb|ADM97193.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D         A    D   +           +    + D+  ++  L   G    
Sbjct: 6   ILIIEDDTDAAGVLEAYLKRDNFQVLLAGDGVNGLDMAQRLKPDLILLDVML--PGMNGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP+I ++        +     G DD V KP H  E++ARV A+ RR   
Sbjct: 64  EVLTALRRKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTCG 123

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +          D  V        Q ++  L   E  +L  L+  + +  ++ ++
Sbjct: 124 VMTPGRSLTFGSLEVDLDAMVATVADAQGQRQLLDLTPTEFSLLATLLRAQTRAFSRQEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A   L D    E VV++HI  LRKKL        + + R +GY  
Sbjct: 184 LEAC--LPDSDALERVVDTHIYNLRKKLEAVGIGGVLLTVRAVGYRF 228


>gi|238752020|ref|ZP_04613504.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
 gi|238709720|gb|EEQ01954.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +          +G + E   + +       S       ++  L       +
Sbjct: 15  ILLVDDDAELGTMLREYLSGEGFNAELVLTGKEGITAALSGDYSALILDIML--PDMSGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 73  DVLRQVRQNSRIPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVMRRFDE 132

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + + T    +           R    QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 133 RPDLSSTDDSAITLGNLTLSPSTRSSLWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL         +++ R +GY I
Sbjct: 193 DKGLGRPREAYD-RSVDVHISNIRQKLAALPDNRLNIETVRSIGYRI 238


>gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G +++            +S   DV  ++  L       L
Sbjct: 3   LLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRML--PEIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TMVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222


>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 256

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 34  LVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMML--PDMDGLS 91

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 92  VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGA 151

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ RA      G + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 152 ADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 212 WS-YDFGGHANVVELYISYLRKKI-DAGREPMIHTRRGAGYMI 252


>gi|221200151|ref|ZP_03573194.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206696|ref|ZP_03579708.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221173351|gb|EEE05786.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180390|gb|EEE12794.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 252

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIATVRGLGYCLEK 220


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                R D   ++  L       L 
Sbjct: 46  LVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMML--PDMDGLA 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+++      + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRSDSVLVVGDLTLDEDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 224 WS-YDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 264


>gi|167746377|ref|ZP_02418504.1| hypothetical protein ANACAC_01086 [Anaerostipes caccae DSM 14662]
 gi|167654370|gb|EDR98499.1| hypothetical protein ANACAC_01086 [Anaerostipes caccae DSM 14662]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G      NS E       S   D+  ++  L       +
Sbjct: 8   ILIVEDDPQIRNFIGYALRQEGFGCITANSGESALSALVSEPVDMMLLDLGL--PRMDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S++P+I +S     +      D+G DD + KP    E+LAR+   +R    
Sbjct: 66  DVLKNVREWSEMPVIIVSARDQDKEKAAALDAGADDYLTKPFSATELLARIRVAFRHYYK 125

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                E     V         R   ++G+V  L   E ++L  L  N G+ +  + I   
Sbjct: 126 GTAAKEQTSFEVGGLKLDLHKRAVFLEGKVLHLTPMEYQLLALLFKNMGRVLTTSYIIKE 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I+G      +   + + ++ LR+K+         + ++  +GY +
Sbjct: 186 IWGEG-YGRDTQALRALMAALRRKIEKTPANPRYILTEIGVGYRL 229


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    I    + G+ +           +      D+  ++  L   G   +
Sbjct: 3   ILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIML--SGMNGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117
           ++ R IR  ++ VP++ ++   S +  +   DSG DD + KP         +  +    +
Sbjct: 61  QVCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRSK 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    +      + V +  +     G+   L   E R+LEY + N+   +++ QI   +
Sbjct: 121 VVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATEYRLLEYFIQNQNVVLSRIQILENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + D  +  NVV+ +I+ LRKK+ N      + +   +GY  
Sbjct: 181 WDI-DFNMGTNVVDVYINYLRKKIDNGYQTKLIHTVFGMGYIF 222


>gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++DG      ++G ++              +    +  ++          + 
Sbjct: 7   LVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEVHLIILDIM--MPNMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
               IRA   +P+I +S        +     G DD V KP H  E+        R     
Sbjct: 65  ATFKIRAERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   + E   + +  D ++  ++GE   L   E +I E LM N G+  +  +I+  
Sbjct: 125 GTYSEGATKVEIDGLTLDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++       E N+V  HI K+R+K+  +      +     +GY ++ 
Sbjct: 185 VWNEEAYNAE-NIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230


>gi|161523829|ref|YP_001578841.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351409|ref|YP_001947037.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221211333|ref|ZP_03584312.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160341258|gb|ABX14344.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189335431|dbj|BAG44501.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168694|gb|EEE01162.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 252

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIATVRGLGYCLEK 220


>gi|310779970|ref|YP_003968302.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749293|gb|ADO83954.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   ++      F  DG  ++             + + ++  ++  L    G+   
Sbjct: 4   LIVEDDIEIQQLVGYFFKKDGYEVQFAGDGLDGLKFLKAFKPELVILDIMLPSLDGKNFT 63

Query: 62  ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +      P+I + +    ++  L+  + G +D + KP   RE++ R   +     
Sbjct: 64  KIVRELPDQYGDPIIIMLTAKTEIEDVLEGLELGANDYMKKPFDPRELILRAKKLISGEM 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R     + V  +            L ++E  +L  L  N+G  +++ +I   ++  
Sbjct: 124 RESKRVSFAGVVVDDERHLVTENDVEVELSKKEYDLLHLLFNNKGIVLSREKILDRVW-Q 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    +  V+ +ISKLR KL++      + + + +GY ++
Sbjct: 183 TNYYSGDRSVDIYISKLRDKLKSISKN--IRTVKGVGYKLE 221


>gi|291617065|ref|YP_003519807.1| PhoP [Pantoea ananatis LMG 20103]
 gi|291152095|gb|ADD76679.1| PhoP [Pantoea ananatis LMG 20103]
 gi|327393515|dbj|BAK10937.1| transcriptional regulatory protein PhoP [Pantoea ananatis AJ13355]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ ++  L    E  + 
Sbjct: 4   LVVEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLQEHLPDIALVDLGL--PDEDGMS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R  + + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A + R   
Sbjct: 62  LIRRWRNDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++      P +V    R+  +  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIIAMAPFQVDLSRRELTIHDQPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALHSDEVIATVRGQGYRFD 221


>gi|188575243|ref|YP_001912172.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519695|gb|ACD57640.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 12/225 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD   ++          G  ++   ++     + +  R D+  ++      GE  L   
Sbjct: 2   VDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLSAA 59

Query: 65  RIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R + +    P +I +S   +    +   + G DD + KP +  E+LARV A+ RR + SN
Sbjct: 60  RTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQSSN 119

Query: 124 NRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +++         G           +  G    L   E  +L   + +  + +++ Q+  
Sbjct: 120 EQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G  D  V +  ++S IS+LR+K+  ++  + + + R  GY +
Sbjct: 180 CARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 223


>gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++        +        + E       S   D+  ++  L       +
Sbjct: 6   ILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGL--PDMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           E+ + IR  S VP+I +S     +  ++  D G DD + KP    E+       L R+  
Sbjct: 64  EIIKRIRTWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +      ++N    G +++    R   ++ E   L   E R++  L  N G+ +    I 
Sbjct: 124 VNSGQGKNSNLFINGDLKIDYAARCVFIKDEEVHLTPIEYRLICLLAKNVGRVLTHNFIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G      +   +   ++ LRKK+  K      + +   +GY +
Sbjct: 184 KEVWGNT-LPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGYRM 229


>gi|220921375|ref|YP_002496676.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945981|gb|ACL56373.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 251

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          + + +         + L + +R D+  ++  L   GE  L
Sbjct: 20  ILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLML--PGEDGL 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 78  SICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRGSG 137

Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + R E G  R+            +     G    L   E  +L  +    G+ +++ Q+
Sbjct: 138 GSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRDQL 197

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G       E  ++  +S++R+K+       + + + R  GY  
Sbjct: 198 LDLTQGRA-PGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVF 244


>gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGL--PDEDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+  
Sbjct: 62  LLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL N      V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKLGN----GIVETVRGLGYRL 216


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G   +     +               I+  L   G+   
Sbjct: 4   ILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLML--PGKNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+  +VP+I +S        +   D G DD + KP    E++ARV +  RR + 
Sbjct: 62  DIIRDVRSTQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRRYER 121

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I       +    R   V G    L  +E  +L +L +N      K  +F 
Sbjct: 122 LKGNKTQEEILSFRGLEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNIVFTKEHLFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G+ D   +   V  HI ++RKK+  +    D +++    GY  
Sbjct: 182 TIWGVDDY-GDLATVPVHIQRIRKKIEKDPSNPDYIETLWGTGYRF 226


>gi|110678697|ref|YP_681704.1| DNA-binding response regulator ChvI, putative [Roseobacter
           denitrificans OCh 114]
 gi|109454813|gb|ABG31018.1| DNA-binding response regulator ChvI, putative [Roseobacter
           denitrificans OCh 114]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      + +  D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNRSLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  S +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKSAMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           VA             E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VAGDVVADSEETKVIERGDLRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADEEFSAIETLYGIGYRYNE 232


>gi|86749494|ref|YP_485990.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86572522|gb|ABD07079.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 245

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G+     ++    +    + R D+  ++      GE  L
Sbjct: 10  ILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVM--MPGEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +      P++ +S        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 68  SAARRLSTGGGPPVLMLSALSDETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSER 127

Query: 122 SNNRAETGPIRVFSDGRD-----------PEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               A T   R                     + E   L   E ++L   +      + +
Sbjct: 128 REPLAGTLGGRKLGFAGWLLDTDTRDLVRDADRAEKIALTTAEFKLLVAFLERPRFVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            Q+   I       V +  +++ +S+LR+K+ +       + + R  GYS+
Sbjct: 188 EQLLD-ITSGRSADVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSL 237


>gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
 gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
          Length = 228

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + +         G  +   +  +    L      D+   +  +    G  +
Sbjct: 5   ILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMDGYDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   + +      P + I+   S    +     G DD + KP   RE++ RV  I RR+ 
Sbjct: 65  IGEVQYL--APDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRIH 122

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S   + + + G + +    R+  V G+   +  +   +L  L +N  +  +KT+++  +
Sbjct: 123 RSAGADEKLQLGDLEINHATREVTVHGQSLMMTIKSFELLWILASNPQRVFSKTELYEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           +   D   + N +  HI  LR+ L          + +   LGY I+ 
Sbjct: 183 W-QEDFVDDTNTLNVHIHALRQDLAKFSTEKTPTIKTVWGLGYKIEV 228


>gi|310817191|ref|YP_003965155.1| DNA-binding response regulator PetR [Ketogulonicigenium vulgare
           Y25]
 gi|308755926|gb|ADO43855.1| DNA-binding response regulator PetR [Ketogulonicigenium vulgare
           Y25]
          Length = 235

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +           L      D+  ++      GE  +
Sbjct: 6   LLIVDDDARIRALLQKFLQRSGFFVTAARDAAHARRLLEGLEFDLVVLDVM--MPGENGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115
           +  R IRA   VP++ ++        +   ++G DD + KP            + R   +
Sbjct: 64  DFCRDIRARLGVPVLLLTARGETSDRISGLEAGADDYLPKPFEPKELLLRINAVLRRTPV 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++     G  R  +D  +  + G +  L   E +++  L A  G  V++T++  
Sbjct: 124 AEARVPTHKVLHMGAARYDADRGELWLHGTLQRLTATEAQLMRVLAARAGSVVSRTELVE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +     E ++E  V+  I++LR+KL         + + R  GY +
Sbjct: 184 EM-SRGPEPLQERAVDVQITRLRRKLEPDSRQPRYLQTVRGAGYML 228


>gi|326315203|ref|YP_004232875.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372039|gb|ADX44308.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 227

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          DG+++     L     L  + R D+  ++  L       L
Sbjct: 5   LLLVEDDPAIARTVAYALERDGLAVSHSLLLGDARGLLRAHRFDLLVLDVGL--PDGSGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
           +L R +R   S +P++ +S +      +   + G DD + KP   RE       +     
Sbjct: 63  DLLRELRQQGSVLPVLMLSAHGEEIDRVLGLELGADDYLPKPFSPRELAARARALLRRAA 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++  A  GP    + G+   + G    L RRE R+L  L+A  G+   +  + +  
Sbjct: 123 VPAAASPPAAAGPFHDDAAGQRMHLHGRPLALTRREYRLLSQLLAGAGRIHTRDALLAGA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           +G  D    +  V++HI  LR KL       + + + R +GYS++ 
Sbjct: 183 WG-GDSESTDRTVDTHIKTLRAKLREADPSREYIHTHRGMGYSLEV 227


>gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 239

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   + +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSIDSKVIEFGDFRLNLGTREMFRGDEPMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVF 232


>gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 223

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +    L       +   N+             D+  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTETLLKLHQFDVHWVNNGIEGLKQLQQQVYDIVLLDLGLPM--MDGI 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + IR     +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 62  LVLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRSG 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N +   G + +  +       G+   L  RE  IL  ++ +  K  +K  + 
Sbjct: 122 LKNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N VE +I  LR KL    G D + + R LGY +
Sbjct: 182 DKLYD-FDSDVSSNTVEVYIHHLRAKL----GKDFIRTIRGLGYRL 222


>gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 249

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +     A    DG+ +      E         R D+  ++  L       
Sbjct: 21  MVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHL--PKVDG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
           +++ R+IR  S VP+I ++        L     G DD V KP +  E            +
Sbjct: 79  VDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQ 138

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    +     E       +   D   Q     L   E R+L  L A   +  ++ 
Sbjct: 139 AKPAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRA 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      L +    E V++SH+SKLR+KL+       +++ R +GY +
Sbjct: 199 YLIENC--LPESDALERVIDSHLSKLRRKLQLAGQDGLIETVRGIGYRL 245


>gi|228991569|ref|ZP_04151513.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228768138|gb|EEM16757.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 235

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   +     G         +    + S  + ++  ++  L        
Sbjct: 4   IMIVEDDPKIAELLSSYIEKYGYQAIVIVDFQRVLDIFSQEKPELVLLDINL--PSFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IRA S  P++ IS        +   ++G DD + KP H+  ++A+V         
Sbjct: 62  YWCRQIRAISTCPILFISAREGTMDQVMALENGGDDYIPKPFHYEVVMAKVRSQLRRAYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K+     E   + +F +    +++ +   + R E  +LE LM N  + V++  + +
Sbjct: 122 DYAPKIEERMIEQQGLTLFPERLVLQLRNQEIDVTRNEAILLEMLMKNYPRVVSREVLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   +  V++N +  + +++RKKL+       +++ R +GY +
Sbjct: 182 KLWD-SELYVDDNTLSVNTTRVRKKLQALGIQGAIETIRSVGYRL 225


>gi|89893810|ref|YP_517297.1| hypothetical protein DSY1064 [Desulfitobacterium hafniense Y51]
 gi|89333258|dbj|BAE82853.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G +  F D+  +     +L        +    +  ++  L       L
Sbjct: 7   ILIVEDDLALSEGIVLAFKDNNFAFVQTRNLTEARQAVRNTSIQLVILDLNL--PDGNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S VP+I ++        +   + G DD + KP     + ARV A  R    
Sbjct: 65  EFLKELRRTSAVPVIILTANDLETDVVRGLELGADDYITKPFSLMILRARVNARLRNAHP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S           FS  +    +  V   L + E+++L  L+ NRG+ + + Q+  AI+  
Sbjct: 125 SAGDTVEMEGFCFSFAKMEFAKNGVPLELSKTEQKLLRLLLENRGQTLTRAQLVDAIWTE 184

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             E V+EN +   +++LR KL +       + +   +GY
Sbjct: 185 GAEYVDENALSVTVNRLRNKLEDRPSSPRFIKTVYGIGY 223


>gi|332308855|ref|YP_004436705.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176184|gb|AEE25437.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 225

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  +E   +             ++  ++  L        
Sbjct: 3   ILVVEDETKTGDYIKQGLAESGFVVELVRTGLDGHHKAMLGEYELIILDVML--PDIDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R  ++  P++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  KILSSLRESNNHTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N              R     G    L  +E  +LE ++  +G+ + ++ I S ++ 
Sbjct: 121 SVPNNILHIADLELDIPSRIATRSGRTINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + +   + NV++  I +LR K+ +      + + R +GY +  N
Sbjct: 181 M-NFDSDTNVIDVAIRRLRAKIDDDFSLKLIQTVRGMGYKMCSN 223


>gi|318058835|ref|ZP_07977558.1| two component transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318075696|ref|ZP_07983028.1| two component transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 235

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +    +              +  ++  L        
Sbjct: 13  LLVVDDEPAILDVLATSLRFLGYEVAEATTGRAALTAAREGGFHLVLLDVVL--PDLDGF 70

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--HREILARVAAIYRR 118
            + R +R    +VP++ ++   S +  +   D G DD + KP          R     R 
Sbjct: 71  AVVRRLREGGGRVPVVFLTARESPEDIVAGLDLGADDYITKPFRLAEVAARVRAVLRRRE 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + + +D  +    G +  L   E R+L +L+A++G+ +   Q+   ++
Sbjct: 131 APAAARVLSCADLELDTDTYEVRRGGRLVDLSPTEYRLLRHLLAHQGRVLTHGQLLEHVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G   E  +  VV+++IS LR KL +  G   ++++R +GY++
Sbjct: 191 GQ--EGGDPGVVKTYISYLRHKL-DGAGPSLIETRRGIGYTL 229


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++   A     G  ++   S      + +    D+  ++  L        
Sbjct: 12  IVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVML--PDIDGF 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            + R IR      P++ ++     Q  +     G DD V KP         +  +    +
Sbjct: 70  TVTRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 129

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G++  L   E ++L YLM N G+ ++K QI   +
Sbjct: 130 EQVEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----------NKLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+                  + +KR +GY I
Sbjct: 190 W-QYDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYII 241


>gi|283851240|ref|ZP_06368523.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573409|gb|EFC21386.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 225

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D        +    + G  ++         +  ++   D   ++  L   G   L 
Sbjct: 4   LIVEDDLEAAAYMVKGLKESGYVVDHVADGREALYRVAAEAYDAVVVDRML--PGVDGLT 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+     P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  IVRTMRSAGNLAPVLILSALGDVDDRVKGLKAGGDDYLVKPYAFAELLARLEALLRRGRA 121

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +   GR     G+   L  +E  +LEYLM + G  V +T +   ++ 
Sbjct: 122 DAPDTTLKLADLEMDLVGRTVRRGGKPIELKPKEFALLEYLMRHAGHVVTRTMLLENVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        + + R  GYS+
Sbjct: 182 -YSFDPQTNVIDVHISRLRQKIDKGQDKPLLSTIRGAGYSL 221


>gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 223

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++         + G   +   + +      S+ + D   ++  L       +
Sbjct: 3   LLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVML--PDTTGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR      P++ ++   S+   +   +SG DD + KP    E+LAR+ AI RR K
Sbjct: 61  EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +        V     R          L   E  +LE+LM   G+ V +  +   ++ 
Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NVVE HI++LR K+        + + R  GY +
Sbjct: 180 ESDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220


>gi|262044958|ref|ZP_06018000.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037685|gb|EEW38914.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 229

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++    + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEYEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           EL R  +  +  +P++ ++        L   + G DD + KP   RE+ ARV       +
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 225

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D  ++          +G  ++  + L+       SAR D+  ++  L     + 
Sbjct: 3   IILI-EDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARYDLVLLDLML--PDGQG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|253573996|ref|ZP_04851338.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846473|gb|EES74479.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 221

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   V      +   +G  +   +S      L      D+  ++           
Sbjct: 6   ILAVDDDPAVLTLIRNILQKEGHLVTALSSPSEVLAL-QLGSYDLILLDVM--MPELDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR+    P++ ++        ++    G DD + KP    E+ AR+AA  RR   
Sbjct: 63  TLCRQIRSKVDCPILFLTAKSMENDLVEGLSIGADDYIVKPFGAGELRARIAAHLRRESR 122

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       F+        Q    PL + E  I E+L  NRG+  +K QI+ +++G 
Sbjct: 123 ERRSVLCIGEVHFNLSGKEMRVQDTFIPLTKSEYAICEFLALNRGQVFSKDQIYESVFG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   E + +  H+  +R KL   +  +P+++   +GY 
Sbjct: 182 FDGESEASTIVEHVKNIRAKLNQ-MNVNPIETVWGIGYR 219


>gi|237729297|ref|ZP_04559778.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
 gi|226909026|gb|EEH94944.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
          Length = 229

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I +   +G S+E F               D   ++  L       
Sbjct: 5   LIWLVEDEQGIADTLIYMLQQEGFSVEAFERGFPVLEKSRQQCPDAIILDVGL--PDISG 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116
            EL R +   H  +P++ ++        L   + G DD V KP   RE+ ARV       
Sbjct: 63  FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++    ++    G   +               L R E  +L+ L+ + G+  ++ Q+   
Sbjct: 123 QKFSTPSSMTRCGDFELNELAAQITWFSIPLNLTRYEFLLLKTLLMSPGRIYSRQQLMDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +   +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 183 VW-ADAQDTFDRTVDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|119471563|ref|ZP_01613977.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
 gi|119445506|gb|EAW26792.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
          Length = 234

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         + G +    +  +       +   ++  ++  L   G+  +
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSQVKTLNPNIVLLDIML--PGQDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+    P+I ++        +   + G  D + KP+  R +LAR+ A  R+   
Sbjct: 65  SVCRELRSFYNAPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQSSE 124

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N   +           + ++ R+ +  G+   +   E  +L YL +N G+ V++  +F 
Sbjct: 125 PNKLEKVESTISVGSLNINTESRNVKFNGQDVNISSAEYLLLHYLASNAGQVVSRDAVFK 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A  G  +    +  V+  IS LRKK   +    + + +    GY +
Sbjct: 185 ATKGR-EYDGLDRSVDVLISALRKKFSDDPQNPEKIKTIWGRGYLL 229


>gi|83941539|ref|ZP_00954001.1| DNA-binding response regulator ChvI [Sulfitobacter sp. EE-36]
 gi|83847359|gb|EAP85234.1| DNA-binding response regulator ChvI [Sulfitobacter sp. EE-36]
          Length = 233

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  + +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTAMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V              E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 VETNEVGDTEETKVIERGDLRMDPLRHAVSWKGKDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRTADDEFSAIETLYGIGYRYNE 232


>gi|46200862|ref|ZP_00207874.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 231

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +          ++   D++ ++          +
Sbjct: 5   IALVDDDRNILTSVSMALEAEGFKVRTYTDGAEALRGLTNQPADLAVLDI--KMPRMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S +P+I ++        L     G DD + KP   + ++ R+  + RRL+ 
Sbjct: 63  ELLQRLRKQSAIPVIFLTSKDDEIDELLGLRMGADDYIKKPFSQKLLIERIRTLIRRLEA 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   AE G          +         +G+   L   E  +L+ L    G    + Q+ 
Sbjct: 123 NAEGAEGGGETLVRGLLVLDPGRHICTWKGKPVDLTVTEFLLLKSLALRPGHVKNRDQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            A YG     V++  ++SHI +LRKK R     F  +++   +GY 
Sbjct: 183 DAAYGESIY-VDDRTIDSHIKRLRKKFREVDDDFAQIETLYGVGYR 227


>gi|291547167|emb|CBL20275.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 223

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   + +         G  +             +     +  ++  L        
Sbjct: 5   IFIVEDDETIANLLKKHLSSWGYDVFLAEDFSNILQEFAGKDPQLVLLD--LKLPFYNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
                IR  SQVP+I IS        +       DD + KP         +  +      
Sbjct: 63  HWCEEIRKVSQVPVIFISSAADNMNMVMAMSRVADDFIAKPFDMDVLVAKIQAILRRTYS 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E     +          GE   L R E RILE L +  GK V++  I + ++
Sbjct: 123 FGNPGNVLEHKGAVLNLSRATLTWNGEETELTRNELRILELLFSQAGKPVSRDAIMTKLW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              D  V++N +  +I++LRKKL      D + +++ LGY 
Sbjct: 183 -ESDSFVDDNTLTVNITRLRKKLEAAGLVDFIITRKGLGYM 222


>gi|323529593|ref|YP_004231745.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323386595|gb|ADX58685.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 228

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E    L +    DV  ++  L        
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVML--PKRDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A   R   
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4]
 gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4]
          Length = 219

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A   ++G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQILATLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGL--PKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + R IR  +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A   R  
Sbjct: 61  TVLRGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G + + +       QG+   L   E +++ Y + N  K +++T++   +Y 
Sbjct: 121 GNPSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEHVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+        + + R LGY ++
Sbjct: 180 KQDFDRDSNTIEVFIGRIRKKI----APKIIKTVRGLGYQLN 217


>gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 229

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     +             D++ ++          L
Sbjct: 4   ILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNVDLAILDIG--MPEMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++  S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 62  EVCRRIRTESALPVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAILKRANG 121

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +      PIR+  D R          L   E  IL  ++A       + Q+ +A 
Sbjct: 122 TAGEQQLHLTRGPIRLDRDSRSVTYDDLDVGLTAVEFAILATMLARPNTVHTREQLMAAA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG     V +  ++SH+  +R K  N      + +   +G+ +
Sbjct: 182 YGAG-IHVADRTIDSHVRNIRAKFSNLGCTTVIATVHGVGFKL 223


>gi|154502907|ref|ZP_02039967.1| hypothetical protein RUMGNA_00727 [Ruminococcus gnavus ATCC 29149]
 gi|153796446|gb|EDN78866.1| hypothetical protein RUMGNA_00727 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+          DG  +    + +           DV+ ++  L       L
Sbjct: 7   ILIVEDDQLLNRTLAYNLTSDGYEVISVFNFDSAVRKLRENEFDVALLDINL--PDGSGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   IR   Q   +I I+        L  ++ G  D V KP     +  +VAA++  L+
Sbjct: 65  DLCEEIRNRGQHTYIIFITANDKESDMLKGYEVGGADYVTKPFSVTVLCKKVAAVFANLE 124

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   R +             +   + GE      +E R L   + N    + K QI   +
Sbjct: 125 LRTPRHDLFDDGFLKIDFSEQSASLAGESLDFTPKEYRTLFLFVKNPRIILTKRQILEKL 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +  + V+E+ + + IS++RKK+        + +   +GY 
Sbjct: 185 WDIDGDFVDEHTLTTIISRIRKKIETD-ERKYIKTAYGMGYQ 225


>gi|121592629|ref|YP_984525.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120604709|gb|ABM40449.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 251

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            ++I+D   +        G  G+ +              +       D+  ++  L    
Sbjct: 18  LLMIEDDHRLAQMVGEYLGQSGLQVTHMADGTSGLARLQAPEGGQLPDLVILDLML--PD 75

Query: 58  EKVLELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
              LE+ R IRA      QVP++ ++        +   + G DD + KP   RE+LAR+ 
Sbjct: 76  IDGLEVCRRIRALPGAAAQVPVLMLTAKGDPMDRVIGLEIGADDYLPKPFEPRELLARIR 135

Query: 114 AIYRRLKVSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           AI RR +     A          +  D R   V G+   L   +  +L  +    G+ + 
Sbjct: 136 AILRRRESGAQPATQVLRFGSLEIDRDARTVSVHGQPAELTSYQFDLLVTMAERAGRVLT 195

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 196 RDQIMEAVRGRELEAFD-RSIDVHMGRIRAAIEADPKNPRRILTVRGVGYVF 246


>gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D         A+    G  +   ++      L      D+  ++           
Sbjct: 4   ILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQHIDLIVLDVM--MPEMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E  + +R ++   P++ ++     +     F +G DD + KP++  E+L R+ A + R  
Sbjct: 62  EFTKQLRGSNDNTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALLRRAK 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ ++   G + +  D       GE   LP++E  +L  L++   +   + Q+   I+G
Sbjct: 122 IVNEHKLHIGKVTLDYDALTVSKDGESQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  E V+   V  HI++LRK+      FD + + R +GY 
Sbjct: 182 MESETVDT-TVNVHINRLRKRFEGYSEFDII-AIRGIGYK 219


>gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++DG      ++G  +           L          ++          + 
Sbjct: 7   LVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEVHCMILDIM--MPKMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IRA   +P+I +S        +     G DD + KP H  E++ARV +  RR    
Sbjct: 65  ATFKIRAERNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRRYVNF 124

Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               E  P+       +  R+  V GE   L   E +I E L+ N G+  + + I+  ++
Sbjct: 125 GTAGEAAPLVEGLELDAAAREIRVDGEPVKLTPTEYKITELLLKNAGRVYSISDIYELVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
                  E N+V  HI K+R+K+  +      +     LGY I+ 
Sbjct: 185 NEPAYNAE-NIVAVHIRKIREKIEADPKNPRYLKVVWGLGYKIEK 228


>gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++     E   +L  +   D   ++  L       L
Sbjct: 3   LLVVEDDADLNRQLTEALTEAGYVVDRAFDGEEGHFLGDTEPYDAVVLDLGL--PKLDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A + R  
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E GP+R+        V G    L   E R+L YLM ++GK +++T++   +Y 
Sbjct: 121 GHASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKKL    G +P+++ R LGY +
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKL----GGEPIETIRGLGYRM 216


>gi|298294321|ref|YP_003696260.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930832|gb|ADH91641.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +           +   D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALESEGYRIQTYTDGATALDGFKTNPPDLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 62  ELLRRLRQKSDMPVIFLTSKDDEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVAP 121

Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +                  R+  +      +GE   L   E  IL+ L    G   ++ 
Sbjct: 122 KDGTLPRETDSAKVLERGQLRMDPERHTCTWKGENVTLTVTEFLILQALATRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVVDDNFEMIETLYGVGYRF 230


>gi|238783257|ref|ZP_04627282.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
 gi|238715850|gb|EEQ07837.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
          Length = 251

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 28  LLLVEDEEKTSSYINRALSELGFTVDVAANGTDGLYLALEYDYDTIVLDVML--PGMDGY 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 86  SVLQGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 145

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 146 DGADVTQLHIDDLHLDLLARRVTRGGARLELTAKEFALLSLLARHQGEILSKMMIAEQVW 205

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 206 DM-NFDSDANVVEVAIKRLRAKMDAPYPVKLLHTVRGMGYVLE 247


>gi|229826761|ref|ZP_04452830.1| hypothetical protein GCWU000182_02137 [Abiotrophia defectiva ATCC
           49176]
 gi|229789631|gb|EEP25745.1| hypothetical protein GCWU000182_02137 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +   N       L S    D+      ++       
Sbjct: 4   ILVVEDDLDIQELLQNFLQESGYDITVANDGLEAINLFSDDDFDLI--LLDILLPKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117
            +   IR  SQ+P+I ++     +  +   D  VDD + KP     ++ ++        +
Sbjct: 62  SVCEFIRKKSQIPIIILTALNGEKEQIKGLDLQVDDYITKPFSMPVLVRKIAAVLRRASK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D     V G  + L +RE  +L  L+ NRG+ + +  + + I
Sbjct: 122 TSDQEHKTISYDNLILDFDDYSASVNGISYELTQREFEVLRELLLNRGRILTRQNLLNKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +E V+++HI  LRKKL        + + R +GY ID 
Sbjct: 182 W-KYDFYGDERVIDTHIKNLRKKL----NITFIQTIRGVGYKIDK 221


>gi|187735330|ref|YP_001877442.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425382|gb|ACD04661.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G  +    + +      +  R D   ++  L       L
Sbjct: 8   ILIIDDERQIRRLLNLTLTGAGYHVRECENGQLGLSETALKRPDAIILDLGL--PDINGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ + +R  +QVP++ ++ +      +D  D+G DD + KP   RE+    RV     R 
Sbjct: 66  EVLKQLREWTQVPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNRP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GPI V    R  E   E   L  +E  IL  L+ ++GK +   Q+   I+G
Sbjct: 126 DREPSVFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              E  + + +  HI+ LR+KL +       + ++  LGY I
Sbjct: 186 PQHEE-DTHYLRVHIAHLRQKLGDSDPENRIIRAESGLGYRI 226


>gi|126461088|ref|YP_001042202.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221641181|ref|YP_002527443.1| DNA-binding response regulator ChvI [Rhodobacter sphaeroides KD131]
 gi|126102752|gb|ABN75430.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221161962|gb|ACM02942.1| DNA-binding response regulator ChvI [Rhodobacter sphaeroides KD131]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVAMTLEAEGFEVETYNDGQSALEAFNKRMPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  S +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKSAMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +A      +  +   E G +R+         +G    L   E  +L+ L    G   ++ 
Sbjct: 122 IAGGEADAQEESRILERGNLRMDPLRHAVSWKGRDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRAADPDFAAIETLYGIGYRYNE 232


>gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 241

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       D G  +    +      + +    ++  ++  L   GE  L
Sbjct: 7   ILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLML--PGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA   +P+I ++   +L   +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124

Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N+A       +             +    +G V  L   +  +L  L+ +  + +++ 
Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   +YG    A++   ++  IS+LR  +         + + R  GY +
Sbjct: 185 FLVEHVYGKESHAMD-RSIDVCISRLRHHIEADTRNPTIIRTVRNAGYML 233


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKGE 58
           ++IDD   +          + +S     S      +    +      +  ++        
Sbjct: 5   LIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVM--MPYM 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ + IR  S +P++ ++   + +  +     G DD + KP    E+ ARV ++ RR
Sbjct: 63  DGFQVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIRR 122

Query: 119 LKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +      + +    R   V+G +  L  +E  +L +L +N+G+   K 
Sbjct: 123 YTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTKK 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           QI++ ++   + A +++ + S ISKLRKK+         V + R +GY  + 
Sbjct: 183 QIYTQVW-EDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNK 233


>gi|320335459|ref|YP_004172170.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319756748|gb|ADV68505.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 226

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    DG   E   +      L  +AR D+  ++  L       L+
Sbjct: 6   LIVEDEVRLADTLEAYLRRDGYRTERATNGRAALELWRAARPDLILLDLML--PEVSGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119
           + R +RA    P+I ++        L     G DD V KP   RE++ARV          
Sbjct: 64  VARQVRAAGDTPIIMLTALDEEVDRLVGLGLGADDYVVKPYSPREVVARVRAVLRRAGGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      GP+ +     +    G    +   E R+L  L    G    + ++ +A+ G
Sbjct: 124 PATPTVLRAGPLTLDLAAFEAHCDGVRLDVTAAELRLLAALAQPPGVVRTRAELLAAL-G 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   +E  V++HI  +R+KL        +++ R +GY +
Sbjct: 183 AWERGTDERTVDAHIKNVRRKLGACGAA--LETVRSVGYRL 221


>gi|187933158|ref|YP_001887688.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721311|gb|ACD22532.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 221

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F  +   +      E       S   D+  ++           
Sbjct: 3   ILIADDDERILRLLSDFFRFNKYEVVIVTDGEQALEKFKSQIFDLIILDVM--MPIYDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
            + + IR  S VP+I ++   S    L  FD G DD V+KP     +LARV        +
Sbjct: 61  IVCKEIRKTSSVPIIILTAKDSDLDELFGFDIGADDYVSKPFKIELLLARVKRLLKNNNI 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      I V  D    ++   +  L  +E  +L Y + N  + + +  +   I+ 
Sbjct: 121 KAKNNILNFKGIEVDQDKHLVKLDNRLIDLSPKEYELLIYFINNVNRVINRETLLRVIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   +   V++HI++LR KL        + + R  GY +
Sbjct: 180 KEEYLGDTRTVDTHINRLRNKLEYYAVD--LRTIRGFGYKL 218


>gi|116333923|ref|YP_795450.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099270|gb|ABJ64419.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 262

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V       F  +    E          + S+       +   L   G   +
Sbjct: 21  LLMIEDNHSVSQMMSMFFKKEQWDAEFAYDGNEAVEMFSANPNIWDMVTLDLNLPGMDGM 80

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++   IR  S   P+I ++   S    +   + G DD V KP     ++AR+ A++R   
Sbjct: 81  QVSAEIRKLSPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRRAE 140

Query: 118 -------------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                            + +                    ++  L  +E  +L+ L    
Sbjct: 141 LGPTAKPTEAEPLNETEAFDVVTENFKLNTKTREAYLNGHQIQDLTPKEFDLLKTLAQKP 200

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 201 RQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 255


>gi|296139723|ref|YP_003646966.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296027857|gb|ADG78627.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+          G  +              + R D+  ++  L   G    +
Sbjct: 8   MVVEDDPAVRTVVADHLRLAGCLVSQHRDGARAWEAFQADRPDLLVLDRML--PGLSGDD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120
           L R +R  S VP+I ++    L+  +D  +SG DD       +   ++            
Sbjct: 66  LCRRVREVSTVPIIMLTALDGLENRIDGLESGADDYLAKPFSLRELQLRVNAQLRRNTPS 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + GP R+ +  R   +      L  RE  ++ YL+ N G+ V++ +I   ++  
Sbjct: 126 EVDLVIDAGPFRIDAAHRRVWIGDREITLTTREYELMLYLVRNPGRVVSRDEILREVWRW 185

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
                + + V  H+ +LR+K+  +      + ++   GY   W
Sbjct: 186 G--FGDASTVTVHVRRLREKIESDPRNPVYLQTEWGAGYRFGW 226


>gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRML--PHVDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYRR 118
            L + IRA     LI +                                           
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ ++ + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERVLANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+       NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQ-DPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|255654521|ref|ZP_05399930.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-23m63]
 gi|296449247|ref|ZP_06891033.1| response regulator [Clostridium difficile NAP08]
 gi|296880778|ref|ZP_06904727.1| response regulator [Clostridium difficile NAP07]
 gi|296261916|gb|EFH08725.1| response regulator [Clostridium difficile NAP08]
 gi|296428225|gb|EFH14123.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +      +    L S    D+  ++           
Sbjct: 4   ILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIEL-SKNEPDLIILDIM--MPKMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   S    +     G DD V KP   RE++AR+ A  RR K 
Sbjct: 61  EVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
           S    E          +      E           L + E  I+E L  + G+  ++ QI
Sbjct: 121 SQYINEENKRSTLYFEKLCLYMKERAIKIDGKDIDLTKIEYDIVELLALHAGQVFSREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +  ++G  D   + + V   + K+R K        + + +   +GY  + 
Sbjct: 181 YEKVWGC-DSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229


>gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 270

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 54  ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTL--PGMDGR 111

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +          + G     + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLY- 230

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 231 NWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 267


>gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9]
 gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum
           SS9]
          Length = 239

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L S     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++++P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V++   E G  R+    R+        PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSVNSKIVEFGEFRLNLGTREMFRGEAPMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVF 232


>gi|330991343|ref|ZP_08315294.1| Transcriptional regulatory protein ChvI [Gluconacetobacter sp.
           SXCC-1]
 gi|329761362|gb|EGG77855.1| Transcriptional regulatory protein ChvI [Gluconacetobacter sp.
           SXCC-1]
          Length = 236

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +  +   E      SS   D++ ++          +
Sbjct: 8   IVLVDDDRNILTSVQMTLEAEGFIVRTYTDGESALHGLSSRPADLAVLDI--KMPRMDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILARV 112
           EL + +RA SQ+P+I +S        L     G DD + KP   R              V
Sbjct: 66  ELLQRLRARSQLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNEV 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G + +          G    L   E  +++ L A  G   ++ Q
Sbjct: 126 SRSEAAGISPTGTMVRGALSLDETRHQCLWHGRDIQLTVTEFLLVKALAARPGLVKSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  A YG  +  V++  ++SHI ++RKK R     F+ +++   +GY 
Sbjct: 186 LIDAAYGE-NIYVDDRTIDSHIKRVRKKFRQVDDAFNQIETLYGIGYR 232


>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 240

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +                + D+  ++      G   +
Sbjct: 13  ILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGNQVDLLIVDVM--MPGLDGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 71  RTTLKVRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173
             N  +    +VF  G                   L   E  IL  L+ N GK  +  +I
Sbjct: 131 LGNMNQQAEGQVFKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDEI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 191 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEK 239


>gi|219666589|ref|YP_002457024.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219536849|gb|ACL18588.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 246

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +         G+               ++    +  ++  L        
Sbjct: 27  ILIVEDDATIAEAIRKHIQSWGLEARCVEDFRNVLAEFAALDPQLVLLDIAL--PFYNGY 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  SQVP++ IS        +   + G DD + KP     + A++ AI RR   
Sbjct: 85  HWCGEIRKVSQVPIMFISSAGDNMNIVMAMNMGGDDFIAKPFDLNVLTAKIQAILRRTYH 144

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +    R     +       QG+   L + + RIL+ LM N+G+ V++  +   ++
Sbjct: 145 FAGQVKILEHRGALLNTADASLTYQGQHIELTKNDYRILQALMENKGRVVSRDTLMQRLW 204

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D  V+EN +  ++++LRKKL      D + +K+ LGY I+
Sbjct: 205 -ETDSFVDENTLTVNMTRLRKKLEAAGLKDFIITKKGLGYLIE 246


>gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  ++     E    L      DV  ++  L    +   
Sbjct: 7   ILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGIELFERNYYDVVLLDLML--PKKSGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+    RVA   +  
Sbjct: 65  ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V         I++    +   +  E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+   L    + + R  GY  
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKI--DLDSKYIHTIRGFGYMF 222


>gi|222084237|ref|YP_002542763.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221721685|gb|ACM24841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 249

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 10  IALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDI--KMPRMDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 68  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRASA 127

Query: 122 SNNRAETGPIR-------------------VFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                  G                      +  +      +GE   L   E  IL  L  
Sbjct: 128 REAANNAGGNAAPKPGVTQQARSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQ 187

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             G   ++  +  A Y      V++  ++SHI +LRKK +   L FD +++   +GY  
Sbjct: 188 RPGVVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKMVDLDFDMIETLYGVGYRF 245


>gi|220925326|ref|YP_002500628.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219949933|gb|ACL60325.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G   +          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAASYLSKAFREAGHVADLAADGLDGYALAREGDYDVLVVDRML--PKLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L R +R    + P++ +S    +   +    +G DD + KP    E    +  +A    
Sbjct: 61  SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARIEVLARRRG 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +          G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +    + NV++ H+S+LR K+        + + R  GY 
Sbjct: 181 WD-YHFDPQTNVIDVHVSRLRAKVDKGFERPMIHTVRGAGYM 221


>gi|120555780|ref|YP_960131.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325629|gb|ABM19944.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 222

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++         G S+    +      L      D+  ++  L       L++ 
Sbjct: 2   IEDDDELRELLARYLASQGFSVREAANGRDGLALALGQDCDIVVLDIML--PDINGLDVL 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  + +P+I ++        +  F+ G DD + KP + RE++AR+ A+ RR+     
Sbjct: 60  RQLRGKTHLPVILLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRIAWDQK 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                         +P  +          L   E  +L+ L+A+ G  V KT +     G
Sbjct: 120 TEVDASRTYGDLRVEPGQRRIYQNDAPVELTGTEYEVLQVLLAHAGSVVRKTDLMQWALG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              EA +   ++ HIS LRKKL N      +++ R LGY
Sbjct: 180 RRLEAYD-RTLDMHISNLRKKLGND-DPPRIETVRGLGY 216


>gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 236

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G ++  +N         +    D+   +          L
Sbjct: 4   IALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTALAEDPPDLGIFDI--KMPRMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R  S +P+I ++            + G DD + KP   R +  RV A+ RR   
Sbjct: 62  ELLRRLRQSSNLPVIFLTSKDDEFDEALGLNLGADDYIAKPFSQRLLGERVKAVLRRARL 121

Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +   E G + +  +      +GE   L   E  IL+ L    G   
Sbjct: 122 SGEPVGTVGLEPGDSKPLERGSLLLDPNRHACSWKGEPVRLTVTEFLILQALATRPGYVK 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++  +  A Y      V++  ++SHI ++RKK R     FD +++   +GY 
Sbjct: 182 SRDNLMDAAYD-DQVYVDDRTIDSHIKRIRKKFREGDKSFDAIETLYGVGYR 232


>gi|41407319|ref|NP_960155.1| hypothetical protein MAP1221 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395671|gb|AAS03538.1| hypothetical protein MAP_1221 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       + G   E     E  E L    R D+  ++  L   G     
Sbjct: 2   LVVEDSETIREMVSEALTEVGYHTEARRDGERLEELLDGIRPDLVVLDVML--PGRDGFA 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR    
Sbjct: 60  LIDVIRDWGDIGIVLITARDGLPDRLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGRL 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +          G    L   E R+L +L+  RG+ V+  QI + ++G   
Sbjct: 120 PQVIQVGDVTLDPGAGVAARGGHRLDLTATELRVLTFLVEQRGRIVSAGQILNGVWGYDA 179

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+V+ H+S LR+KL    G   + + R +GY +
Sbjct: 180 Y--DPNLVQVHVSGLRRKLEAH-GPRILHTVRGIGYRL 214


>gi|289678852|ref|ZP_06499742.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
          Length = 236

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 14  ILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVML--PGIDGW 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I  R + 
Sbjct: 72  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 132 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 192 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 232


>gi|218440364|ref|YP_002378693.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173092|gb|ACK71825.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 231

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V++     FG +    +          L    + D+  ++  L    E   +
Sbjct: 1   MVVDDDAAVRNLISRFFGYNNYDTQTAPDARTARELFQRFQPDLVILDVNL--PDESGFK 58

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVAA 114
           L + IR    + ++ ++        L+ F+ G DD + KP                R+A 
Sbjct: 59  LCQEIRKTGVL-VLMLTCMTDTNYVLEGFEKGADDYLTKPFDLEILKAKVGALFKRRLAD 117

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   NNR     + +  +     V   +  L   E  +L +L  +  +   ++++ 
Sbjct: 118 KPYHDSSFNNRIIFDKLVIDVEKCQVTVNNNLVLLTTLEYDLLYFLATHPNRVWDRSELL 177

Query: 175 SAIY-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S+++    +E   E  V+ HI ++RKK+ +  G   + + R  GY  +
Sbjct: 178 SSVWSDENEEDKAERKVDVHIGQIRKKIGDMDG-KLIKTVRGKGYMFE 224


>gi|92116064|ref|YP_575793.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91798958|gb|ABE61333.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +           +++ D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSQPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E  R +R  S +P+I ++        L     G DD + KP   R               
Sbjct: 62  ETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRACP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +      + G +R+  +      + E   L   E  IL+ L    G   ++ 
Sbjct: 122 KDPTAAPKESDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRF 230


>gi|91778060|ref|YP_553268.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|187920547|ref|YP_001889579.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|296157989|ref|ZP_06840822.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307726131|ref|YP_003909344.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|91690720|gb|ABE33918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
 gi|187718985|gb|ACD20208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|295891757|gb|EFG71542.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307586656|gb|ADN60053.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E    L +    DV  ++  L        
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVML--PKRDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A   R   
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|325264533|ref|ZP_08131263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
 gi|324030195|gb|EGB91480.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G        G       ++        + + D+  ++  L       +
Sbjct: 6   ILIVEDDLALAEGLRMNMEMAGFQASAVYNVRDAFMQLEAEQADLLLLDINL--PDGNGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           +    +R    +P+I ++     +  +  F +G DD + KP H + ++ RV      Y+ 
Sbjct: 64  DFAEKVRRMLNIPIIFLTARDMDEDMIAGFRAGADDYIIKPFHIQVLVERVRAVLRRYQP 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N+ +TG +++  +       G+   L   E ++LE    N G  + +  +   ++
Sbjct: 124 SMEVKNQIQTGHLQIDFESYTVLKSGKPLSLTPTEFKLLEKFCRNPGIVLTRQVLIDELW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 V+E+ +   +S+LR K+ +   F  + +    GY 
Sbjct: 184 DNEGNYVDEHTLTIFVSRLRSKIADN-EFTYIKTVYGTGYR 223


>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG        G +++           L      D+  ++  L       
Sbjct: 3   ILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGL--PKVDG 60

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             + R +R  ++  P+I ++   +    +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  FSVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRG 120

Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   N   +       S GR   + G    L  RE  +LE LM   G  V+K Q+   +Y
Sbjct: 121 QCGVNPVYSCGTLTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E    N +E +I +LRKK+        + + R LGY I+
Sbjct: 181 S-YAEEASNNAIEVYIHRLRKKIEPAG--VTIRTIRGLGYVIN 220


>gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM
           4166]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++       G+ G  ++   + E   +       D++ I+  L   G   L+
Sbjct: 4   LVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGL--PGISGLD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           L R +R+     P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+  R   
Sbjct: 62  LIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+ +  + +     GE   L   E RILEYLM ++ + VAK ++   +Y  
Sbjct: 122 FTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE  + NV+E  + +LR+KL  +    P+++ R LGY  
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKPIETVRGLGYLF 220


>gi|121593642|ref|YP_985538.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605722|gb|ABM41462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 219

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L      D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R A  QVP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE L    G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +   + NV++  I +LR K+ +      + + R +GY
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGY 219


>gi|113968398|ref|YP_732191.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113883082|gb|ABI37134.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G       S+        S +  +  ++  L       +
Sbjct: 5   ILVVDDEPQIHTFMRISLEAEGFEYLSATSIATALKQYQSHQPHLIVLDLGL--PDGDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R   + P++ ++     +  +   ++G +D ++KP   RE++ R+  + R L  
Sbjct: 63  ELLHGLRQQDKTPVLVLTARDQEEEKIRLLEAGANDYLSKPFGIRELIVRIKVLVRDLVD 122

Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++  +                 +  +   L ++E  +L  LM++ G+ + ++++   I+
Sbjct: 123 TSSTIDMLQFGPLTLQKSSHQCWLNQQEVALTKKEFALLAQLMSHPGQLLKQSELLRNIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G   +  + + +   + +LRKKL +      + ++  LGY +
Sbjct: 183 GETHQE-DSHYLRILVRQLRKKLNDSDEQQLIKTEPGLGYRL 223


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +           L      D+  ++      G   +
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEVDLMILDVM--MPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173
             N  +    +V+  G                   L   E  IL  L+ N GK  +  +I
Sbjct: 122 LGNMNQQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEK 230


>gi|295133222|ref|YP_003583898.1| two component transcriptional regulator winged helix family
           [Zunongwangia profunda SM-A87]
 gi|294981237|gb|ADF51702.1| two component transcriptional regulator, winged helix family
           [Zunongwangia profunda SM-A87]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +   +    + +    L +    D+  ++  L    +   
Sbjct: 6   ILIIDDEPQIRKLLQINLESNDYKVFEAGTAKEGILLAARYTPDLILLDIGL--PDKNGH 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ + +R     P++ +S   +    +   D+G  D + KP    E+    R A    + 
Sbjct: 64  QVLQELRQWFNNPILILSVQDNEADIVSALDNGATDYLTKPFRTGELLARIRSAIRNSQN 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N    TG I +    R  +V+  +  L   E  +L  L  N GK +    +   ++G
Sbjct: 124 TDNNAILTTGDISIDFVARIIKVREHIIKLTSTEYELLFLLARNEGKVLTHHYLLRKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                +E   +   I  LRKK+         + ++  +GY  
Sbjct: 184 PS-FQLETQYLRVFIGNLRKKIEANPNHPKHIITESGIGYRF 224


>gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     E           D+  ++  L       +
Sbjct: 8   ILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGL--PKRDGV 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R  RA     P++ I+   ++   +   D+G DD + KP    E+ AR+ A I R+ 
Sbjct: 66  EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            + E +  N VE +I  LRKKL    G D + + R LGY 
Sbjct: 186 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYM 220


>gi|206559345|ref|YP_002230106.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198035383|emb|CAR51259.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 242

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGIDADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLEK 220


>gi|320540374|ref|ZP_08040024.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
 gi|320029305|gb|EFW11334.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNGLLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIVDLVL--PGEDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  RAH    P++G++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRAHQMKLPILGLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++     P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIIVLPPFQIDLSRRELSVNEQNIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKK++ +   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKVQAEYPQDVITTVRGQGYRFDV 222


>gi|319934752|ref|ZP_08009197.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319810129|gb|EFW06491.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D         G  +   N+ +    + S+    ++ ++          ++
Sbjct: 6   LVVEDEIEICDAIEIYLKTQGYHVYKANNGQEGLNIISNQTIHLAIVDIM--MPIMDGIQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R +   P+I +S        +   + G DD V KP    E+LARV++  RR    
Sbjct: 64  MTMKVRENYDFPIIMLSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVSSQLRRYSRY 123

Query: 123 NNRAETGPIRVFS---------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                    D +   V+G++  +   E +IL+ LM   GK  +   I
Sbjct: 124 LNVILDQQHENSYVVGGLELNLDTKQVTVEGKIIKVTPIEFKILQLLMEYPGKVFSADNI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + +++   ++A+  + V  H+  LR+K+  +      +     +GY I+ 
Sbjct: 184 YESVW--QEDAISTDTVMVHVRNLREKIEIDPKNPRYLKVVWGVGYKIEK 231


>gi|302670114|ref|YP_003830074.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302394587|gb|ADL33492.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 220

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +    ++G ++ G    +    L       +  ++  L   G   +
Sbjct: 4   ILVVEDNQELREVLVDFLRNEGYTVSGTGDGDKALALYEKYGARLLVLDIML--PGASGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S  P+I +S        L    SG DD   +  +  +IL        + ++
Sbjct: 62  RILDKVREKSNTPVIMVSAKLGKDDKLSALISGADDY-IEKPYDIDILIAKIKGIFKRRL 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +    G I +          G+V     +E  +L+ LM N+G  + K  IFS I+G  
Sbjct: 121 AIDEITDGNITLDLVHEQIIKDGQVIEATTKEFELLKLLMENKGHTLVKHYIFSTIWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           D   EE  +  HI +LR+KL +       + +    GY  +
Sbjct: 180 DSESEEQTLTVHIRRLREKLEDNPKVPVRIITVWGKGYRYE 220


>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
 gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
          Length = 238

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L S     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R + +A++Q+P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G  R+    R+     E   L   E  +L+ L+ N  + +++ +
Sbjct: 125 VEAPGAPASEEKVVEFGQFRLNLGTREMFRNDEPLTLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEEDPSKPRYIQTVWGLGYVF 232


>gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541]
 gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541]
          Length = 219

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  L+ DG        G +++ F   +  +     A  D   ++  L    G  +
Sbjct: 3   ILLVEDDRLIGDGLKVGLTQLGFTMDWFMDGKQGQQALFDAPYDAVILDLSLPNIDGMDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R        P++ ++   +L   +     G DD + KP    E+ AR+ A I RR 
Sbjct: 63  LKYWRK--EGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRRRS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + +         QG+   L  +E  +L   + N  K ++++ I   +Y 
Sbjct: 121 GQLSPTLIHGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL    G   + +   +GY +
Sbjct: 180 NWDEEVSSNSVEVHIHHLRRKL----GAKFIQTVHGVGYRL 216


>gi|71737975|ref|YP_272551.1| osmolarity response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257481801|ref|ZP_05635842.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289627977|ref|ZP_06460931.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|298485217|ref|ZP_07003310.1| Two-component system response regulator OmpR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71558528|gb|AAZ37739.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160205|gb|EFI01233.1| Two-component system response regulator OmpR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322224|gb|EFW78320.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331860|gb|EFW87798.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866570|gb|EGH01279.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330873006|gb|EGH07155.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890972|gb|EGH23633.1| osmolarity response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986823|gb|EGH84926.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009435|gb|EGH89491.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 246

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G       ++E  + L +    ++  ++  L   GE  L
Sbjct: 13  ILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLML--PGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A++QVP+I ++      + +   + G DD + KP +  E++ARV A+ RR  
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 121 VSNNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                A        S G           +    V  L   E  +L+ L+ +  + + + +
Sbjct: 131 APVPGAPGSEDESVSFGDYELSLATRELKRGDVVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 191 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|77406220|ref|ZP_00783289.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77175170|gb|EAO77970.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + +         +G      ++ +       +    +   +  +        
Sbjct: 4   ILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPM--MDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A   VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR  
Sbjct: 62  QLIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGXDDYMVKPVQLQELALRIKALLRRAN 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +               D    +   +    P++E R+L +L++   +   + ++  +I+G
Sbjct: 122 IVAQHQLIIGNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D  ++E VV++ I+K+R+K+ +   F  +++ R +GY 
Sbjct: 182 M-DTDLDERVVDACINKIRRKVEHLPDFK-IETVRGVGYR 219


>gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIML--PGIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
            L + +R       P+I ++    L   L  F SG DD + KP    E+ AR+ A+  R 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +    D  +   +G +  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRTLQVGDLIYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFAKPLLQTVHGVGYRL 220


>gi|254519763|ref|ZP_05131819.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913512|gb|EEH98713.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  ++   +    +    +   D+  ++  L        
Sbjct: 5   ILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLN--DTDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            + R I +   +P+I +     +   +   + G DD + KP   RE        I  R  
Sbjct: 63  SVCRNI-SGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRREE 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            I +    R   V  E   L  +E  +L +L  N  K  ++ Q+
Sbjct: 122 MKKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSRNQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   +   V+ HI++LRKKL++      +++   +GY +
Sbjct: 182 LDLIWG-YDFLGDTRTVDVHITRLRKKLKDNFN---IETIFGVGYML 224


>gi|218288607|ref|ZP_03492884.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241264|gb|EED08439.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L  ++   ++  +  E   +L  +A  D   ++  L   G    
Sbjct: 3   ILLVEDDRGLSDALAQLLREESFQVDVAHDGEEGLYLAETAVYDALVVDVML--PGLSGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R     VP++ ++    +   +   ++G DD + KP    E LAR+ A+ RR +
Sbjct: 61  DLVRTLRDKRVHVPVLFLTALGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNR 120

Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         +    R      E   L  +E  +LEYL+++RG+ + + +IF+ ++
Sbjct: 121 ELGTDMTLRSGPLVLDPLARRATFGNEPIKLSDKEFDLLEYLLSHRGQILMRERIFNRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G+ D  V +  V+ ++  LRKKL+       + + R +GY 
Sbjct: 181 GI-DSDVMDTTVDLYVHYLRKKLQPFGYDTAIRTVRNVGYM 220


>gi|190576038|ref|YP_001973883.1| putative two component response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013960|emb|CAQ47600.1| putative two component response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 11/224 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD A ++D         G  +         + L    R DV  ++      GE  L +
Sbjct: 9   VVDDDASIRDAIADCLLLHGYQVRVAADATALDVLLQVDRPDVIILDWM--MPGEDGLSV 66

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R ++A + +P++ +S   S    +   + G DD + KP   RE+LARV A+ RR     
Sbjct: 67  CRRLQARA-IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVGALLRRQDKLR 125

Query: 124 NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            R  +              R     G    L R E  +L  L    G+ + + Q+     
Sbjct: 126 ARVASELRFSGWRLLPEQRRLLAPDGNELVLSRGEFSLLLALAERPGRVLGREQLLQLSR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           G   ++V+   V+  IS+LR+KL          V + R  GY  
Sbjct: 186 GEPSDSVD-RAVDLAISRLRRKLGQASPGAEALVQTSRGEGYRF 228


>gi|190566948|ref|ZP_03019864.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|190561939|gb|EDV15908.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  +++ L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDSNL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
 gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
          Length = 234

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  + +         G  +   ++ +            +  ++  L       L+
Sbjct: 6   LVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNL--PDMDGLD 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115
           + + IR   + VP++ ++        +   ++G DD + KP    E+ A      R + +
Sbjct: 64  ICKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRRSNV 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V   + +   + +           ++  L   E  +L +L  + G+  ++ Q+ +
Sbjct: 124 QAIKNVEPEQIKIADLVIDQATHSVYRNKQLITLTSTEFSLLAFLAKSPGRVYSREQLLA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            ++  +     E+ V SH+++LR K+         + +   +GY ++ 
Sbjct: 184 EVWD-YHNDCYEHTVNSHMNRLRNKIEPNPAKPTYIKTVWGVGYKLEV 230


>gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 220

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G  +   N       L  +   D+  ++  L       L
Sbjct: 3   ILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWML--PKINGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + IR    + P+I ++   ++Q T++   +G +D + KP    E++ RV   +R   
Sbjct: 61  DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFRNKA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I V           E   L +RE  +L YL+  +GK   + +I   ++ +
Sbjct: 121 TDE-ILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWDI 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +  V++  ++ +RKKL  K+  D + + R +GY
Sbjct: 180 -NFEYDTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGY 216


>gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + +         +G      ++ +       +    +   +  +        
Sbjct: 4   ILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPM--MDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A   VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR  
Sbjct: 62  QLIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRAN 121

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +               D    E   +    P++E R+L +L++   +   + ++  +I+G
Sbjct: 122 IVAQHQLIIGNTCLNEDELSLEYFEQEIIFPQKEFRVLFHLLSYPNRIFTRLELLDSIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D  ++E VV++ I+K+R+K+ +   F  +++ R +GY 
Sbjct: 182 M-DTDLDERVVDACINKIRRKVEHLPDFK-IETVRGVGYR 219


>gi|253681042|ref|ZP_04861845.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562891|gb|EES92337.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 237

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 96/228 (42%), Gaps = 7/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +  G       +G  +   +S+E  +    +    +  I   ++       
Sbjct: 4   ILLIEDDITLSMGMKYALESEGFIIHTADSVESAKDSLKNLANVLKLILLDIMLPDGNGY 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + IR+ +  +P+I ++        +   D G DD + KP+  RE+++R+ A+ RR  
Sbjct: 64  DLCKYIRSKNLNIPIIFLTACDEEANIILGLDLGGDDYITKPVRIRELISRINAVLRRNS 123

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +       I       +          E   L   E ++L  LM+N G  + +  +  
Sbjct: 124 ILSPPTSEHIITSKDLKLYPLKCKLLKHQEEISLTSIEYKLLLTLMSNSGNILTRDTLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            ++ L  + ++ N +  +I +LR+K+ +       + ++R +GY  + 
Sbjct: 184 KLWDLDGDFIDNNTLSVYIRRLREKIEDNPKSPSYILTQRGIGYKWNE 231


>gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 226

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A+   +   ++     +       S   D + ++  L        
Sbjct: 3   ILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVML--PRRDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ ++    ++  ++  D+G DD + KP    E+LAR+ ++ RR  
Sbjct: 61  SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +  D  + E +G+   L ++E  I+  LMA   +  +K  + S ++G
Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D    +N VE+++S LRKKL        + + R  GY +
Sbjct: 181 -YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220


>gi|254411491|ref|ZP_05025268.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181992|gb|EDX76979.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 362

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A        ++     E       +   D+  ++  L       +
Sbjct: 3   ILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINL--PHLDSI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++ +S   + Q  +   D+G DD + KP     + ARV A+ RR +
Sbjct: 61  SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++          +     +    G+   L  +E  +L  LM++  +  ++  I   ++ 
Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D       V++H+  LR+KL+     D +++    GY +
Sbjct: 181 FGD-PPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRL 220


>gi|170738625|ref|YP_001767280.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192899|gb|ACA14846.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G   +          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAASYLAKAFREAGHVADLAADGLDGYALAREGSYDVLVVDRML--PKLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117
            L R +R    + P++ +S    +   +    +G DD V KP    E    +  +A    
Sbjct: 61  SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYVPKPYAFSELLARVEVLARRRG 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +          G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +    + NV++ H+S+LR K+        + + R  GY 
Sbjct: 181 WD-YHFDPQTNVIDVHVSRLRAKVDKGFDRPMIHTVRGAGYM 221


>gi|149913501|ref|ZP_01902034.1| DNA-binding response regulator ChvI, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812621|gb|EDM72450.1| DNA-binding response regulator ChvI, putative [Roseobacter sp.
           AzwK-3b]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      S    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQQAFDAFSKKLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  + +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKTSMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +              E G +++         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 MDGKIVGDTEETKVIERGHLQMDPLRHAVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKKLR     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKLRMVDPDFSAIETLYGIGYRYNE 232


>gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 243

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++         G  +             + A  D+  ++  L    E   
Sbjct: 8   ILLVDDDQEIRELLETYLTRAGFQVRATADGAGFRQALNEAPSDLVILDVML--PDEDGF 65

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R H +    P+I ++        +   + G DD + KP   RE+ AR+ A+ RR
Sbjct: 66  SLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQ 172
            +    R  +  +       D               L   +  +L+  + +  + + +  
Sbjct: 126 AQFGQERGGSEVLAFDEWRLDMVSHRLFHADGEEVILSGADFALLKLFLDHPQEILDRDT 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           I +A  G  D    + +V+  +S+LR++LR+ +     + + R  GY +  N
Sbjct: 186 IGNATRGR-DLMPLDRIVDMAVSRLRQRLRDTEKPPRLIRTVRGSGYQLAAN 236


>gi|325263338|ref|ZP_08130073.1| DNA-binding response regulator YycF [Clostridium sp. D5]
 gi|324031731|gb|EGB93011.1| DNA-binding response regulator YycF [Clostridium sp. D5]
          Length = 221

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 5/218 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D  L+         + G      ++ +    L  +       +   +       L L
Sbjct: 5   IIEDDKLLNQALDIALQNAGYDTICVHTKKEALTLLGNGE---DLLLVDIGLPDGDGLRL 61

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + ++    +P I ++     +  L  FD G DD V KP   + +L R+ A+++R    +
Sbjct: 62  YQELQKTRNIPAIFLTAKDEERDMLAAFDMGADDYVVKPFSMKVLLKRIEAVFKRSS-ED 120

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I ++   +   ++G+   L  +E ++LEYL+ N+G+ + K  I   I+GL  +
Sbjct: 121 QTLSCREITLYPLRKQVFLKGQEITLTAKEYQLLEYLLRNQGQVLTKENILEQIWGLDGQ 180

Query: 184 AVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            V +N V   I++LRKK+  +    + + +   LGY I
Sbjct: 181 FVVDNTVSVTINRLRKKIEPDAKQPEYIKNVFGLGYRI 218


>gi|238061627|ref|ZP_04606336.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237883438|gb|EEP72266.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D        DG  +             +  R D+  ++      G   LE
Sbjct: 2   LVVDDDLTVSDVVRRYLEQDGCEVRLAADGADGLAAIAVHRPDLVVLDLM--MPGIDGLE 59

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     +P+I ++        +   + G DD V KP   RE++ R+ ++ RR   
Sbjct: 60  VCRRIRRQLPDLPVIMLTALGEEADRVLGLEVGADDYVTKPFSPRELVLRIRSVLRRTAG 119

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + V +  R  E+ G    L  RE  +L +LM + G+  +++ +  
Sbjct: 120 HTTSPAGLTRLVDAELAVDTARRVAELNGTPLSLTVREFDLLVFLMRHPGRAWSRSDLLD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++G      +++ V  H+ +LR+K+  K      + +   +GY  D
Sbjct: 180 KVWGWQ--FGDQSTVTVHVRRLREKIERKPAEPRRIRTVWGVGYRYD 224


>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 236

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMI--PGINGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+   + R+  
Sbjct: 74  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW-N 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 232


>gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G+ ++   S E       S    +  ++      G    
Sbjct: 5   ILIVDDEPDICEILTFNLVNEGLIVDYAYSAEEALQKL-SPEHSLILLDIM--MDGMSGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R   +++P+I ++   S    L  F  G DD ++KP   +E++ARV AI +R K
Sbjct: 62  KMAEKLRSEGNEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILKRAK 121

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +         I         + ++  +  E+ PL + E  IL  L +N  +  ++  I  
Sbjct: 122 LKKQNESPTSIDFEGLSINLESKEVIIDEEMIPLTKTEFEILALLTSNPSRLFSREDIIG 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++      + E  V+ HI++LRKK+++      + S+   GY  + N
Sbjct: 182 VVWSETPY-ITERTVDVHITRLRKKMKDYG--QFITSRSGYGYRFNVN 226


>gi|332522292|ref|ZP_08398544.1| putative transcriptional regulatory protein ResD [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313556|gb|EGJ26541.1| putative transcriptional regulatory protein ResD [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L DD   ++D        DG  ++ F + +         + D+  ++      G   
Sbjct: 4   LIYLADDEKNIRDLLTPFLEHDGFLVKAFENGDLLYQEFLIKKPDLIILDIM--MPGTDG 61

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115
           LE+ ++IR++ Q  P+I ++   S    +  F+ G DD   KP         + + +   
Sbjct: 62  LEVMKLIRSYDQHLPIIMLTARDSDADFITAFNLGTDDYFTKPFSPIKLSLHVKSLLKRS 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       +      + + S+ R   +     PL + E  +L  L+       ++ ++ +
Sbjct: 122 HDFGSDKKSAFTYRELTLDSEKRLATLFEHEIPLTKTEFDLLLVLIEKPETAFSREELLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  +E   V+  + +LRKKL        +++    G+ +
Sbjct: 182 RIWGFED--IESRAVDDTVKRLRKKLNQYHSKVALETIWGYGFKL 224


>gi|319939145|ref|ZP_08013509.1| two-component system response regulator [Streptococcus anginosus
           1_2_62CV]
 gi|319812195|gb|EFW08461.1| two-component system response regulator [Streptococcus anginosus
           1_2_62CV]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +         G S L    S +           D+  +   ++      
Sbjct: 8   ILILDDNPEILEMVQESLNIAGFSNLTSVQSQKEALEQFEEKSFDLVIL--DIMLPEGSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP++ +S    ++     F+ G DD + KP   R++  R+ +I +R  
Sbjct: 66  FEVLKGIRKTSTVPVLFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    P       +    +G+    L  +E  IL+ L  N+ + V   Q+   ++G
Sbjct: 126 PEKEDTLVLPACQVHFSQALITKGKLEIQLTAKEYSILKVLYDNKNRIVTFDQLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           L      +N + +HI K+R+K+  N    + + + + LGY +  N
Sbjct: 186 L-QYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN 229


>gi|253580205|ref|ZP_04857472.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848724|gb|EES76687.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEIDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           L  + V+EN +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYI--WN 224


>gi|157267317|gb|ABV26372.1| PhoP [Proteus mirabilis]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   + +  DV+ ++  L    E  +
Sbjct: 9   ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGL--PDEDGI 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+ARV A + R +
Sbjct: 67  SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 127 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLY- 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D + + R  GY  D
Sbjct: 186 PDAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 227


>gi|159037188|ref|YP_001536441.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916023|gb|ABV97450.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 218

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  ++  ++             D   ++  L   G    
Sbjct: 3   LLVVEDEARLAAALQRGLQAEGFVVDVASTGPAGLEAARHGDYDAMILDVML--PGLSGY 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  +  P++ +S         D  D G DD + KP  +  +LAR+ A+ RR  
Sbjct: 61  EVVRQLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                       R+    R     G    L  RE  +L+YLM      V+K ++   ++ 
Sbjct: 121 PERPAVLAVGDLRLDPARRRVTRDGAEVALTGREYALLDYLMRRPDTVVSKVELLDHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N VE ++  LR+KL    G D +++ R  GY +
Sbjct: 181 AS-VETAPNAVEVYVGYLRRKL----GRDRLETVRGAGYRL 216


>gi|149926501|ref|ZP_01914762.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149824864|gb|EDM84078.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 231

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D       ++G  ++   +      L +    +V  ++  L       L
Sbjct: 3   LLLIEDDLRLADYLKKGLTEEGFVVDLARNGIDGLHLATQGLYEVIILDGML--PDIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R    +P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 61  AVLSALRQSKSIPVLMLTARAMVEDRVSGLKAGADDYLVKPFAFAELVARLHALGRRTST 120

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++T       + + +  R  +  G+   L  +E  +L  L+  +G+ +++T+I   
Sbjct: 121 VAAESQTTVLTLLDLELDAVRRTAKRGGKDLRLTAKEFSLLWLLLRRKGEVISRTEIAEL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+ +     E NV++  I +LR KL +      + + R +GY ++
Sbjct: 181 IWDMH-FDSETNVIDVAIRRLRIKLDDPYEIPLLHTIRGMGYVLE 224


>gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG        G +++   +    +   S+   D+  ++  L       L
Sbjct: 3   ILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +RA S  VP++ ++   S+   +   D G DD + KP    E+ ARV A + R  
Sbjct: 61  EVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+   +G   + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIE--VGGIRIATVRGLGYCLEK 220


>gi|330957179|gb|EGH57439.1| osmolarity response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 246

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G       ++E  + L +    ++  ++  L   GE  L
Sbjct: 13  ILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLML--PGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112
              R +R A++QVP+I ++      + +   + G DD + KP +  E++         + 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A +       +     G   +    R+ +   EV  L   E  +L+ L+ +  + + + +
Sbjct: 131 APVPGAPGSEDESVSFGDYVLSLATRELKRGDEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 191 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|260459587|ref|ZP_05807841.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259034389|gb|EEW35646.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 259

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G+ +E   +         + + D+  ++  L   GE  L 
Sbjct: 30  LIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIML--PGENGLS 87

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RAH+ VPL+ ++        +   + G DD V KP   RE+ AR+ A+ RR   +
Sbjct: 88  ICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAYA 147

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIFS 175
            +  +   +  F+  R   V+ ++             E  +L     N G+ +++ ++  
Sbjct: 148 PDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLSREELL- 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++         E  V+ H+S++R+K+  +      + + R  GY  
Sbjct: 207 SVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIF 252


>gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family
           [Psychromonas ingrahamii 37]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++             ++  +  E   +       D + I+  L       +
Sbjct: 3   ILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGL--PKIDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +   +R  +   P++ ++   S Q  ++  D+G DD + KP +  E++AR+ A I R  
Sbjct: 61  TVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   + + + E   L   E +I EY M + G+  +KT +   IY 
Sbjct: 121 GKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNEYGLIETLRGQGYRL 220


>gi|325168770|ref|YP_004280560.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064493|gb|ADY68182.1| two component transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   + D     F  +G  +                R D+  ++  L    +  
Sbjct: 5   LILIIEDDPEISDIIETYFAREGFRVVTAGDGAVGLGHHQRLRPDLVVLDIKL--PRQDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  S  P+I ++        L     G DD V KP +  E++AR  A+ RR+ 
Sbjct: 63  YEVLAAIRRVSDTPVIMVTALADDLDKLQALRIGADDYVVKPFNPLEVVARAKAVLRRVA 122

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +              +      +         L R E RIL ++ A+  +   ++++ 
Sbjct: 123 GRSPDHVMRVGPLRVDPQAHRAVVETGSDHVTLDLTRTEFRILAHMAASPNRVFERSELV 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A   L +    +  V+SH+S LR+KL        +   R +GY ID
Sbjct: 183 DAC--LPEGEALDRTVDSHVSNLRRKLTAAGAGGVLTGVRGVGYRID 227


>gi|307709273|ref|ZP_07645731.1| transcriptional regulatory protein resD [Streptococcus mitis SK564]
 gi|307619856|gb|EFN98974.1| transcriptional regulatory protein resD [Streptococcus mitis SK564]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +++    L  ++   +    S      L      D+  ++  L   G+   
Sbjct: 4   ILVIEDNSDIQEILRTLLTEE-HEVIQAFSGTEGIMLFDQGGIDLVLLDIML--PGKNGD 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---------HREILARV 112
           ++ + IR  SQ P+I ++     +    +   G +D + KP            +   +  
Sbjct: 61  QVLKAIREQSQTPVIMLTALSDKKLISQYLLDGANDYIVKPFDLDEVFARVTVQLRQSAE 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K  N       I+  ++  + +   E   L ++E  IL+ L+ +  K   K +
Sbjct: 121 KQPMGIGKTENLPQNLKNIQFDAESFEIKNSQETIRLAKKECLILQTLLKHPKKIFTKEE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++  ++        +N + +H+S LRKKL       + +++   +G  +
Sbjct: 181 LYELVW-EESYLPGDNTLNTHLSNLRKKLNQLDPHQEYIETIWGVGVRL 228


>gi|304405824|ref|ZP_07387482.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345067|gb|EFM10903.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 231

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   + +   A+   +G +++GF+S E  + L      D+  ++  L       L+  
Sbjct: 8   VEDEVKILEEGKAILQKEGFAVQGFHSFEEAKELLMEGVADIVILDWML--PDVSGLDAC 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + +     +P+I ++        +   + G DD + KP   RE++AR+  + RR + +  
Sbjct: 66  KWVVNTIGIPVIMVTARTDEFDKVLALEIGADDYIPKPFGMRELIARIRTVLRRSRKAPV 125

Query: 125 RA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + + +D  +  ++GE   L   E  +L  + +  G+   ++Q+  +  
Sbjct: 126 ETSSSQVLSFNELTIDTDKHEVRLRGERVSLTATEYNLLLAMASYPGRVFTRSQLIESSM 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G       E  ++SHI  LRKK+  +   F+ + +   +GY  
Sbjct: 186 GES-YFGYERTLDSHIRNLRKKIEADPNNFEYILTVYAVGYKF 227


>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMDQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|229062134|ref|ZP_04199458.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228717117|gb|EEL68793.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G      + L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAEILEEHLERYGYQSFRVSDLRHIKDEFVKVSPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L   ++      + +F      E +G+   L + E  +LE LM    +   + ++  
Sbjct: 122 EYALAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYATREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G +++          L      D+  ++  L   G   +
Sbjct: 3   LLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNL--PGMDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R I+   +   ++ +S    L   +   D G  D + KP H +E+ AR+   + R  
Sbjct: 61  EVLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + + ++ R     G    L  RE  ILEYLM + G+ V+  ++   ++ 
Sbjct: 121 TQADAALMWGGLCLDTNARTASCNGIPLELTMREFAILEYLMMHMGRPVSAEELMEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N V+ +IS +R+KL      + + + R  GY I
Sbjct: 181 -SEADPFSNQVKVYISVIRRKLLAVTKDEIIRNIRGAGYLI 220


>gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016]
 gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 243

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +   + G ++    +      L +    D+  ++  L        
Sbjct: 18  IFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLML--PDICGE 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S+VP+I ++     +  L+  D G DD + KP   R+++ARV A+ RR + 
Sbjct: 76  DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 135

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      +D        + +  G +  L   E  IL  ++   GK   + ++  
Sbjct: 136 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              G  +    +  ++SHI  LR K+ +     + + + R +GY  
Sbjct: 196 VTLGQ-NFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 240


>gi|171316128|ref|ZP_02905353.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171098732|gb|EDT43526.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 242

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A + D   A     G+      +      L    R D+  ++  +        +
Sbjct: 16  LIAEDDADIADILTAYLSRSGLRSVRAANGRDALALHLQLRPDLMLLDVQMPL--VDGWK 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR     P+I ++        L     G DD V KP +  E++ARV A+ RR    
Sbjct: 74  VLAEIRHRGNTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVARVQAVLRRSMPG 133

Query: 123 NNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   +   +R      D E                L   E ++L  L     +  ++ ++
Sbjct: 134 SRGDKQQVLRAAPFEIDLERHEATVDVAGVPHSLLLTLTEFKLLTQLARAPQRVFSRAEL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            SA     D    E  V+SHISKLR+KL +      + S R +GY +
Sbjct: 194 MSACLQEGDAL--ERTVDSHISKLRRKLDDLGVSGVLVSVRGVGYKL 238


>gi|167589764|ref|ZP_02382152.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + +   A    +G       + +    +Q   + D+  ++       +  
Sbjct: 4   LILIAEDEPEIAEILDAYLTREGFRTYRVGNGQAALDVQPLLKPDLILLDI--KMPEKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R     P++ I+        L     G DD + KP +  E++AR+ A+ RR  
Sbjct: 62  WEVLIELRRRGNTPVVIITALDQDIDRLQGLRIGADDYIAKPFNPVEVVARIRAVLRRSG 121

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S                 +      E       L   E R+L ++  +  +   ++++ 
Sbjct: 122 TSLQGGVMRVGNLEIDTESYLARVRSESGETQVSLTLTEFRLLAHMARSPNRVFTRSELV 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L      E  V+SHIS+LRKKL         +  R +GY +
Sbjct: 182 DAC--LAGSGALERTVDSHISRLRKKLECAGAPGMPEVMRGVGYRL 225


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A ++         DG  ++     E   +L      D+  ++  L       L
Sbjct: 3   LLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGL--PKLNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R   + +P++ ++   S Q  +   ++G DD + KP  + E+ AR+ A + R L
Sbjct: 61  TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +++    GP+ +    +   + G    L   E R+LEYL+  R   V K  +   +Y 
Sbjct: 121 KTASDVLTLGPLSIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E  + NV+E  + +LR+KL       P+++ R  GY  
Sbjct: 180 PHGEDRDSNVLEVLVGRLRRKLDPDGSLGPIETVRGRGYRF 220


>gi|82779650|ref|YP_405999.1| DNA-binding response regulator CreB [Shigella dysenteriae Sd197]
 gi|170021642|ref|YP_001726596.1| DNA-binding response regulator CreB [Escherichia coli ATCC 8739]
 gi|253774972|ref|YP_003037803.1| DNA-binding response regulator CreB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164324|ref|YP_003047434.1| DNA-binding response regulator CreB [Escherichia coli B str.
           REL606]
 gi|293417871|ref|ZP_06660493.1| two-component system [Escherichia coli B185]
 gi|297517068|ref|ZP_06935454.1| DNA-binding response regulator CreB [Escherichia coli OP50]
 gi|300918114|ref|ZP_07134726.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300930636|ref|ZP_07146025.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947478|ref|ZP_07161662.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955637|ref|ZP_07167992.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|309787378|ref|ZP_07681990.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
 gi|81243798|gb|ABB64508.1| catabolic regulation response regulator [Shigella dysenteriae
           Sd197]
 gi|169756570|gb|ACA79269.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|242379919|emb|CAQ34756.1| CreB transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326016|gb|ACT30618.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976227|gb|ACT41898.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli B str. REL606]
 gi|253980384|gb|ACT46054.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BL21(DE3)]
 gi|291430589|gb|EFF03587.1| two-component system [Escherichia coli B185]
 gi|300317474|gb|EFJ67258.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300414698|gb|EFJ98008.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300452912|gb|EFK16532.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461487|gb|EFK24980.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|308924956|gb|EFP70451.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
 gi|323939784|gb|EGB35986.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDVMILDVGL--PDISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +    I  F                   R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
 gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
          Length = 276

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  +  +           DV  ++  L       LE
Sbjct: 54  LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIML--PDVDGLE 111

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P + ++   S+   +    SG DD + KP    E++AR+  + RR   
Sbjct: 112 ILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSSH 171

Query: 122 SNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A+              R+    G    L   E  +L +LM N  + +++T+I   +
Sbjct: 172 LERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDRV 231

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 232 W-NYDFAGRTSIVDLYISYLRKKIDSDREP-MIHTVRGIGYML 272


>gi|294678288|ref|YP_003578903.1| transcriptional regulator PetR [Rhodobacter capsulatus SB 1003]
 gi|118572687|sp|P31079|PETR_RHOCA RecName: Full=Protein petR
 gi|294477108|gb|ADE86496.1| transcriptional regulator PetR [Rhodobacter capsulatus SB 1003]
          Length = 237

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L S    ++  ++      GE  L
Sbjct: 9   LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVM--MPGEDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L R +R     P++ ++     +  ++  ++G DD + KP   +     I A +  +  
Sbjct: 67  SLTRDLRTKMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVPE 126

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         GP+R   D  +     +   L   E  ++    A+ G+ + +T++   +
Sbjct: 127 AVTAGPKYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGEVIGRTELIEEL 186

Query: 178 YGLF-----DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       +EA  +  V+  I++LR+K+  +      + + R LGY +
Sbjct: 187 -GRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRYLQTVRGLGYML 234


>gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC2047]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++          G SL+     E   +  +    D++ I+  L       +E
Sbjct: 4   LIVEDEPQLQQQLADTLCAKGYSLDRAGDGEEGLYYGNEFNYDIAIIDLGL--PKLDGIE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA+ + +P++ ++   + Q  ++  ++G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  LIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRAAG 121

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +              +    + +   L   E ++LEYLM N  K ++KT++   IY  
Sbjct: 122 KADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + NV+E  I +LRKKL      +P+++ R  GY +
Sbjct: 181 QDYDRDSNVIEVFIGRLRKKLDPDNLHNPIETLRGRGYRL 220


>gi|325272287|ref|ZP_08138697.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102580|gb|EGC00017.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 226

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 81/219 (36%), Gaps = 2/219 (0%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           + I+D A+     +A     G+ +E  ++         +   D+  ++  L    G  ++
Sbjct: 5   LTIEDDAVTGQEIVAELTSHGLEVEWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R ++  + + +I        +                          V      + +
Sbjct: 65  TTLRNLKIATPILMISALSDVDERVRGLRAGGDASLTKPFASDEMAARVEVLLRRNSVPM 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R +   +++     +         L   E ++LEYLM + G+ + +  IF  ++G +
Sbjct: 125 TQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 N+++ HI +LRKK+ +      + + R  GY+I
Sbjct: 184 HFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|323485093|ref|ZP_08090446.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401649|gb|EGA93994.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      +   + +     +S      L  +   D+  ++  L     +  +
Sbjct: 6   LIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLG--DMEGFD 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117
           + + +R+     P++ IS       +L     G DD + KP        ++ A +     
Sbjct: 64  VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   ++  + GP    +         +   L  +E  ++   M + G+   K  I+  +
Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEKEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +G    AV++N +  +I++LR K+       + + + R LGY  
Sbjct: 184 WGTS-VAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGYRF 226


>gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564]
 gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D +       G ++   +       +      D+   +           
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIM--MPRMDGY 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +       P + I+   S Q  +     G DD + KP   RE++ RV  I RRL 
Sbjct: 63  DLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLH 122

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +R+     + +V      L  +   +L  L +N  +  +KT ++  ++
Sbjct: 123 RGGETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
              D   + N +  HI  LR++L      +   + +   LGY I+ 
Sbjct: 183 -QEDYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|303240446|ref|ZP_07326963.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592011|gb|EFL61742.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   + +   +    +G  +E FN         +    D+  I+          
Sbjct: 6   LIYIADDEVNICNIIKSFLVKEGYEVETFNDGRKILEAFNKRPADMLIIDIM--MPELDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR  S VP+I +S   +    +     G DD + KP    E++AR+ +I+RR++
Sbjct: 64  FSLCSSIREKSNVPVIIVSAKDTETDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIE 123

Query: 121 VSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   + E           + SD +  E+  +   L   E  +L YL  N+ K V+++++ 
Sbjct: 124 MDKIKNEKVQKIKIADVVINSDKKQAEINDKNIGLTNMEFALLYYLAVNKNKAVSRSELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G FD  VE    +  I ++RKKL +      +++    G+ ++
Sbjct: 184 DKVWG-FDNEVETRATDDMIKRVRKKLTDVGSALKIETVWGYGFKVE 229


>gi|294678357|ref|YP_003578972.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
 gi|294477177|gb|ADE86565.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      S    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGYEVETYNDGQAALDAFSKRLPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           EL + +R  + +P+I ++        +     G DD V KP   R               
Sbjct: 62  ELLQRLRQKTTMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++     +         G + +         +G    L   E  +L+ L    G   ++ 
Sbjct: 122 ISTGEAPVAEDTKVIVRGSLSMDPLRHSVTWKGREVTLTVTEFLLLQALAIRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRTVDDDFSAIETLYGIGYRYNE 232


>gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 258

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +G +++        +    + + D+  ++  L       +
Sbjct: 3   LLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGL--PKMDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++  +   ++   +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120

Query: 121 VSNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +      +       + GE   L +RE  +LE L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N VE ++  LRKKL    G D + + R +GY I
Sbjct: 181 WKDE-ISSNAVEVYVHSLRKKL----GPDLIRNIRGMGYMI 216


>gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGL--PGISGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL  R+       P++ ++   + Q  ++   +G DD + KP    E+ AR+ A + R  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL  + GF P+D+ R LGY  
Sbjct: 180 PGDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGYLF 220


>gi|304413818|ref|ZP_07395235.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Candidatus Regiella insecticola LSR1]
 gi|304283538|gb|EFL91933.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Candidatus Regiella insecticola LSR1]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +      L   +   +      E    L      DV  ++       +  +
Sbjct: 4   ILLVEDDREISASLKELLEMEAFEVVVAYDGEQALKLLD-DSIDVILLDIM--MPKKNGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P+I ++   +       F+ G D    KP   R ++A++  I +  + 
Sbjct: 61  ETLKELRKNYKTPVIMLTARDTELDQTLSFELGADQYHAKPFKPRTLIAQIGRILQSHQP 120

Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N       ++V         ++     +V  L   E  +L  L    G+ V++ ++   
Sbjct: 121 QNEDQSARILKVEGLELNPGRQEASFHEKVLDLTGTEFTLLYLLAERIGQVVSREELSEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218
           + G      +   ++ H+S LR+KL  R   G+    + R  GY
Sbjct: 181 VLGKRLTPFD-RAIDMHVSNLRRKLPGREDGGYHWFKTLRGRGY 223


>gi|317047742|ref|YP_004115390.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316949359|gb|ADU68834.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 222

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ ++  L   GE  + 
Sbjct: 4   LVVEDNALLRHHLAVQLREMGHQVDAAEDAKEADYFLQEHVPDIALVDLGL--PGEDGMS 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A + R   
Sbjct: 62  LIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++      P +V    R+  +  E   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIISMSPFQVDLSRRELTINEEQVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      + +++ R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALYPTEVINTVRGQGYRFD 221


>gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1]
 gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  ++     E    L +    DV  ++  L    +   
Sbjct: 7   ILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLML--PKKSGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+    RVA   +  
Sbjct: 65  ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V         I++    +   +Q E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+        + + R  GY  
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKIDVDN--KYIHTIRGFGYMF 222


>gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A++ DG        G S+    +  + + L  +   D+  ++  L       L
Sbjct: 3   ILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGL--PDMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R+     P++ ++    +   ++  + G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  ELLRKLRSRKIPLPILILTARDGVNDRINGIEQGADDYMTKPFELRELEARVHALIRRCY 120

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +         + +      V G+   L  RE  +LE L+   GK V+K +I   +  
Sbjct: 121 GGFSNDIVIGRLALDTHNHQVLVDGQTINLSAREYGVLEILLIQAGKVVSKDRIAQRLAV 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D A+ +N VE ++ +LRK++        + + R LGY ++
Sbjct: 181 DGD-ALTDNAVEIYVHRLRKRIEPYGA--VIRTVRGLGYLLE 219


>gi|300853321|ref|YP_003778305.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433436|gb|ADK13203.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    ++E  + + +    D+  ++  L        
Sbjct: 4   ILLVEDDKSLNRGISFKLSKEGYKVFSSRTIEEAKIILAENSVDLMILDVGL--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119
           +L   +R  + + +I ++        +   D G DD + KP     +++++ A       
Sbjct: 62  DLCGEVRKKNDLLIIFLTACDQEIDIVTGLDMGADDYIAKPFSLMVLMSKINALLRRNSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  + +  +G I             E   L + E ++L+YLM N G+ + K Q+ + ++ 
Sbjct: 122 KNQSKKIVSGDIVFSITDMKVLKNEEELFLSKTEIKLLKYLMDNAGQIITKDQLLNKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           + +  V++N +  +I +LR+K+ +       + + R +GY
Sbjct: 182 IDNTFVDDNTIAVNIRRLREKIEDNPSKPKYIKNVRGMGY 221


>gi|325680032|ref|ZP_08159600.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324108269|gb|EGC02517.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 222

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       + G   E F   +      + A  D+  ++  L   G+  
Sbjct: 2   LIYIVEDDDNIRELEAFAMKNSGYDTECFADSKEFCQAITKAVPDLILLDIML--PGDDG 59

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-Y 116
           L L + +R      ++P+I IS   +    +   D G DD + KP    E+++RV A   
Sbjct: 60  LTLLKKLRDDPATAKIPIIIISAKTTELDRVKGLDMGADDYMCKPFSVMEMVSRVKARLR 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++      I +  D R     G+   L  +E  +L+  +++    + +  I   
Sbjct: 120 GVRDKNDDMICFDGITMSEDTRTVSADGKPVELTFKEYELLKMFLSSPKIVLRRDDILDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G          ++ HI  LR KL        + + R +GY +D
Sbjct: 180 IWGQ---ESTGRTLDVHIRTLRSKLGEYG--KYIKTIRNVGYKLD 219


>gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G                     D+  ++  L   G   +E
Sbjct: 7   LVVEDDKRLARLLELELKHAGYESRCECDGTQGLRSVRFWEPDLILLDRML--PGMDGVE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + R +R  S VP++ ++        ++  DSG DD + KP    E+    R A       
Sbjct: 65  VCRNVRLFSSVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALRGNDSP 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +               L +RE  +LEY+M NR   + + QI   ++G 
Sbjct: 125 GQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQILDHVWGE 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                E N+V+ +I  LR K+ +      + + R +GY +D 
Sbjct: 185 T-YEGEANIVDVYIRYLRGKMDDAFEPKLLHTVRGVGYVLDK 225


>gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 222

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A   +  +  F   G             +   SA  D + I+  L        
Sbjct: 3   ILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVML--PKLNGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P+I +S   S+++ +   + G DD + KP    E++ARV A  RR  
Sbjct: 61  TVIEELRAAGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRRAS 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R     GE   L   E ++LEYLM N+G+ V+K  I   ++
Sbjct: 121 CAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +      N+VES + +LR+K+        + + R  GY ++
Sbjct: 181 -EYHFDTRTNIVESRVCRLREKIDKPFARKLIRTVRGFGYVLE 222


>gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PEMDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|27381762|ref|NP_773291.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354931|dbj|BAC51916.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 256

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +        ++  ++   +         +  R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRTLIAKYLRNNACNVTAVSDGREMSRAMADHRVDLIILDVML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R+ +Q P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  SLCRKVRSEAQTPIIMLTARGEDVDRIVGLEMGADDYLTKPFNPRELLARINAVLRRQAA 125

Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +        +                +G    +   E  +L       G+ +++  
Sbjct: 126 AQAASSIEGASTLAFEGWRIDLRLRELRNPEGARVAVTSAEFDLLRTFCERPGRVLSRDS 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    E  ++  +S++R+K+  N      + + R  GY  
Sbjct: 186 LLDLTQGR-NTGSFERSIDVLVSRIRRKIEPNPHDPTIIKTVRSGGYLF 233


>gi|225375196|ref|ZP_03752417.1| hypothetical protein ROSEINA2194_00821 [Roseburia inulinivorans DSM
           16841]
 gi|225212976|gb|EEG95330.1| hypothetical protein ROSEINA2194_00821 [Roseburia inulinivorans DSM
           16841]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESVKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVVGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           L  + V+EN +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPATPVYIKNIRGLGYI--WN 224


>gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ +G        G S++ F   +       SA  D   ++  L       L+
Sbjct: 4   LLIEDDPLIGNGLNIGLTKSGFSVDWFTDGKTGLEAVKSAPYDAVVLDLTL--PKMDGLD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + +  R      P++ ++   +L   ++    G DD + KP    E++AR+ A I RR  
Sbjct: 62  ILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRRYG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N   E   ++   +     ++ +   L  RE ++LE  M N+ + + +  I   +Y  
Sbjct: 122 QANPIIEHSLVKFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLY-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +DE +  N +E H+  LRKKL    G   + +   +GY++  N
Sbjct: 181 WDEDISSNALEVHMYNLRKKL----GKQFIRTVHGVGYALGKN 219


>gi|75674546|ref|YP_316967.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419416|gb|ABA03615.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +           +++ D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSQPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E  R +R  S +P+I ++        L     G DD + KP   R               
Sbjct: 62  ETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRACP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +      + G +R+  +      + E   L   E  IL+ L    G   ++ 
Sbjct: 122 KDPAAAPKESDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRF 230


>gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +LIDD   + +         G ++   +  E       S    D+  ++  L       
Sbjct: 6   LLLIDDDQALTELLQEYLSAQGYTIHVASDGEAGLLAAKSGQHYDLIILDVML--PKVDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            E+ + +R+    P++ ++        +   + G DD + KP +HRE             
Sbjct: 64  FEVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVD 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + A  +  K   N  E G + +    +      +   L   E  +L+ LM+     V K 
Sbjct: 124 IQAGLQSDKQKQNTIEIGDVELNIAAQTVACNAQQVELTGTEFAVLKLLMSCSPDLVPKQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I   + G    A +   ++ H+S LRKKL +    D + + R +GY 
Sbjct: 184 AISEQVLGRKLAAFD-RSIDMHVSNLRKKLSHFSDHDKIKTHRGVGYV 230


>gi|313884593|ref|ZP_07818354.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620377|gb|EFR31805.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 237

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++  +    N          +  +    +   L       +
Sbjct: 3   ILMIEDNESVSEMMEMFFENENYTATFKNDGLEGFEAYKAEPKHWDIVILDLNLPSMDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR  S + P+I ++   S    +   + G DD V KP     +LAR+ A++RR +
Sbjct: 63  QICRQIRKISAETPIIMLTARDSESDQVIGLEMGADDYVTKPFSPMTLLARMKALHRRAQ 122

Query: 121 VSNNRAETGPIRVFSDGRD----------PEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  +                               +  L  +E  +L     +  +  ++
Sbjct: 123 IVPSDQHEADAEFDVTTDHLKINTATREARYNDQVIENLTPKEFDLLVTFAKSPKRVFSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             + ++++       +E  V++HI KLR+K+   +G   + +   +GY 
Sbjct: 183 DDLLTSLWEDP-FYGDERTVDAHIKKLRQKIE-VVGPQLIQTVWGVGYK 229


>gi|227518520|ref|ZP_03948569.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553045|ref|ZP_03983094.1| response regulator [Enterococcus faecalis HH22]
 gi|293387675|ref|ZP_06632220.1| DNA-binding response regulator PhoP [Enterococcus faecalis S613]
 gi|307268529|ref|ZP_07549902.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307279075|ref|ZP_07560133.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|312904010|ref|ZP_07763178.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907240|ref|ZP_07766231.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909858|ref|ZP_07768706.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952257|ref|ZP_07771132.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074002|gb|EEI11965.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177832|gb|EEI58804.1| response regulator [Enterococcus faecalis HH22]
 gi|291082864|gb|EFE19827.1| DNA-binding response regulator PhoP [Enterococcus faecalis S613]
 gi|306504200|gb|EFM73412.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306515125|gb|EFM83667.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626268|gb|EFQ09551.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629641|gb|EFQ12924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632486|gb|EFQ15769.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289816|gb|EFQ68372.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315034073|gb|EFT46005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036741|gb|EFT48673.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145567|gb|EFT89583.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147740|gb|EFT91756.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151441|gb|EFT95457.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315153220|gb|EFT97236.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157827|gb|EFU01844.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315165474|gb|EFU09491.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315174346|gb|EFU18363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315578357|gb|EFU90548.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579871|gb|EFU92062.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 16/231 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   V +     F ++G      +  +       ++ E    I   L       + + 
Sbjct: 2   IEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMDGMAVC 61

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +V+ 
Sbjct: 62  REIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAEVAE 121

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKRVAK 170
              +T      +     +                       +E  +L  L     +  ++
Sbjct: 122 AAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 182 EQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 230


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGK 56
            +L+DD   + D    L   +G S++  N  E                D+  ++  L   
Sbjct: 4   ILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWML--P 61

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------- 107
               +E+ + +R+ SQ  P++ ++   +L   +   D+G DD + KP   RE        
Sbjct: 62  KLSGIEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRAL 121

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +           +    R +   + +  + +    QG+   L  +E ++L YLM +  + 
Sbjct: 122 LRRSEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQL 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   QI+  ++   D+    NV+ + I  LR+K+  K     + +    GY
Sbjct: 182 LTHDQIYQHLWPSGDQ-PSSNVLAAQIRLLRRKIAAKNSPPLIHTIYGKGY 231


>gi|194367392|ref|YP_002030002.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350196|gb|ACF53319.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD A ++D         G  +         + L  + R DV  ++      GE  L +
Sbjct: 9   VVDDDASIRDAIADCLLLHGYQVRVAAGAMALDMLLQAERPDVIILDWM--MPGEDGLSV 66

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R ++A + +P++ +S   S    +   + G DD + KP   RE+LARV A+ RR     
Sbjct: 67  CRRLQARA-IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLRRQDKLR 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +            + +          L R E  +L  L    G+ +A+ Q+     
Sbjct: 126 TQVASEMRFAGWRLLPEQRRLIAPDGAELVLSRGEFSLLLVLAERPGRVLAREQLLQLSR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
               ++V+   ++  IS+LR+KL          V + R  GY  D
Sbjct: 186 SEPSDSVD-RAIDLAISRLRRKLGQAAPGAEALVQTLRGEGYRFD 229


>gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  +    S +       S   D+  ++          +
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKI-SKNPDIILLDIN--MPEIDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+   IR +   P++ ++        ++ F +G DD + KP    E    ++      +R
Sbjct: 62  EVCNRIRDYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  + R   +      L ++E  I+E L  N G+   K +I+  ++
Sbjct: 122 KSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 182 G-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+         +   D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALAQDFDAILLDLML--PDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110
           E+ R +R     P+I ++   S+   +   D G DD + KP              R +  
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              A    +               ++       G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY 
Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDAPGQPSYIKTVRGTGYM 229


>gi|302542071|ref|ZP_07294413.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459689|gb|EFL22782.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 238

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 88/237 (37%), Gaps = 24/237 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVSAIEAFLIGKGE 58
            +L++D   V     A+    G  +    S E         + A   V  ++  L    +
Sbjct: 3   LLLVEDDNHVAAALTAVLSRHGFDITHARSGEEALKALLPGAGAPFGVVLLDLGL--PDQ 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR
Sbjct: 61  DGFEVCGRIRKLTATPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSRR 120

Query: 119 LKV---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                                    GP+ +    R   V G    L R+E  +L  L   
Sbjct: 121 TLPSDSGGGAGTEDSGEGPQPPLRLGPVTIELPTRQVSVDGATVSLTRKEFDLLALLAQR 180

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G    + QI S ++           +E HI+ LR KL        +++ R +GY +
Sbjct: 181 PGVVFRREQIISEVW-RTSWEGTGRTLEVHIASLRSKL---HMPALIETVRGVGYRL 233


>gi|288940679|ref|YP_003442919.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288896051|gb|ADC61887.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 244

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A + D   A     G+             +  +   D+  ++           +
Sbjct: 19  LIAEDEAEIADILAAYLQRSGLRTRHAADGREVLAMHQALEPDLLLLDV--QMPHLDGWK 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114
           +   IR+ S  P+I ++        L     G DD V KP +  E+             +
Sbjct: 77  VLSEIRSRSDTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRTRPS 136

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++     A    +           + +   L   E ++L  LM    +  ++ ++ 
Sbjct: 137 TPAPIQRLRVGAIQIDLDSHEASICRADRPQRLDLTLTEFKLLACLMRAPKRVFSRAELL 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  L +   +E  V+SHISKLRKKL          S   +GY  
Sbjct: 197 --VDCLPEGDTQERTVDSHISKLRKKLEALGIQGVPSSVWGVGYRF 240


>gi|256829709|ref|YP_003158437.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578885|gb|ACU90021.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 89/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +    +      G +++          L  +   D+  ++  L   G    
Sbjct: 3   ILIVEDNSDILANVLDYLQLKGYTVDCAQDGLGGLHLAVTHAYDLIVLDVML--PGIDGY 60

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
           ++ + +R  +   +P+I ++   +L   +  F++G DD + KP    E+ AR+ A+  R 
Sbjct: 61  QICKRLREDAKLDIPVIMLTARDTLDDRIQGFNTGTDDYLVKPFALSELHARIQAVLRRA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G +    +       G          R+LE LM      V + ++   ++
Sbjct: 121 KGSRVHELRVGDLAFDVETLQVRRAGRTLRPHPFGLRLLEILMKKSPAVVRREELERELW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G  D   + + + SHI +LR+ +        + +   +GY +  N
Sbjct: 181 G--DNCPDSDSLRSHIHQLRQVVDKSFDSPLLHTVHGIGYRLAEN 223


>gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
 gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     +    +G  +   ++      L      D+   +   +  G   L
Sbjct: 5   ILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDW--LMPGLSGL 62

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L  R+  +  + P++ ++    +   +   ++G DD V KP    E+LARV A  RR +
Sbjct: 63  DLCLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRRAR 122

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                         +   R+     ++  L  +E  +LE L+ +  + + + QI   ++G
Sbjct: 123 REVVDQLEFEDLSLNGITREVYRDRQLIQLTAKEFDLLELLLRHPRQVLTREQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E NV+E +I  LR KL        + + R +GY +
Sbjct: 183 -YDFMGESNVIEVYIRALRLKLEATNPKRLIHTVRSVGYVL 222


>gi|90581397|ref|ZP_01237192.1| osmolarity response regulator [Vibrio angustum S14]
 gi|90437374|gb|EAS62570.1| osmolarity response regulator [Vibrio angustum S14]
          Length = 239

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLML--PGEDGL 64

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +  A++ +P++ ++        +   + G DD + KP + RE        +  + 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V +   E G  R+    R+        PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVF 232


>gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 219

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 87/219 (39%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++             +    + E    + ++ + D+  ++  L   G    
Sbjct: 4   ILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIFNNRKIDIVLLDLML--PGIDGF 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  SQ   +I ++     +  +     G DD + KP    E+ AR+      L 
Sbjct: 62  EVCQKIRDISQSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARII----SLA 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N   +    +       E+      +   E  +L++L+ N+ K   +  I   ++G+
Sbjct: 118 RRLNHIYSKKESLVIKSGPFELDVINKKVTPTEYCLLQFLINNKNKVFTRNDILDEVWGI 177

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +   +E VV+ +I ++R+K+  +    + + +    GY
Sbjct: 178 -NYIGDEKVVDVNIRRIRRKIENDPSAPEYLCTDWGYGY 215


>gi|90424232|ref|YP_532602.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106246|gb|ABD88283.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 76/226 (33%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + +   A    +G              L  + + D+  ++          
Sbjct: 4   LILIAEDEPQISEILDAYLTREGFRTVRAGDGRTALDLHLALKPDLVLLDV--TMPRLDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114
            E+   IR      +I I+        L     G DD V KP +  E++A      R   
Sbjct: 62  WEVLAEIRRRGDTAVIMITALDQDIDRLQGLRIGADDYVVKPFNPVEVVARSKAVLRRVG 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++         +       +     +  PL   E R+L ++     K   ++++ 
Sbjct: 122 QSSAGRMLRVNCVAIDLDSHMVKIEAGGTAQPLPLTLTEFRLLAHMARTPTKAFTRSELV 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   L      E  V+SHIS LRKKL        +   R +GY +
Sbjct: 182 DAC--LPGSDALERTVDSHISNLRKKLDEAGAPGMLSGVRGIGYRL 225


>gi|120553936|ref|YP_958287.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323785|gb|ABM18100.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G++    +  +           D+  ++  L   G   L 
Sbjct: 6   LIIEDNPGIGELVRMQVSDLGMTAVLRDRGDSGLARFRDGGIDLVILDLML--PGLDGLA 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA    VP++ ++   +    +   + G DD + KP    E+ AR+ A++RR+  
Sbjct: 64  VCREIRASAGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARIKALFRRVDA 123

Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + ++              R+    R   ++     L  RE  +L +  ++RG+  ++ Q
Sbjct: 124 LSRKSSAEDDVAEIEADGLRIDPVRRRVFLECRELDLTAREFDLLWHFASHRGRVFSRAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A++G ++    E+ V +HI++LR K+  +      V +   +GY  
Sbjct: 184 LLDAVWG-YNHDGYEHTVNTHINRLRNKIEPDPAEPRYVQTVWGVGYRF 231


>gi|328882248|emb|CCA55487.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++G        G  +    + E      +  R D+      L+  G   ++
Sbjct: 5   LLIEDDPSVREGVELGLRRRGHEVRTAATGEAGLDALAEFRPDLLL--LDLMLPGMNGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R  SQ+P+I ++        +   ++G DD + KP     I AR+ A+ RR++  
Sbjct: 63  VCHRVRESSQLPIIMLTARGDDFDVVIGLEAGADDYIVKPARTEVIEARIRAVLRRIEEP 122

Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                         V   G      GE   L   E ++L +L A   +  ++ Q+   ++
Sbjct: 123 GGARSAVEFHGDLAVDRAGLTVAKSGERIALAPSELKLLLHLTAAPEQVFSRQQLLEHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR K+ +       + + R  GY  
Sbjct: 183 -EHSYHGDARLVDACVRRLRNKIEDTPGEPRYIQTLRGFGYRF 224


>gi|229141178|ref|ZP_04269717.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228642219|gb|EEK98511.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 237

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      + L   +         +  ++  L        
Sbjct: 6   ILIVEDDEKIAGILEEHLERYGYQSFRASDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 64  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 123

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 124 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 184 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 231


>gi|148975768|ref|ZP_01812599.1| Response regulator [Vibrionales bacterium SWAT-3]
 gi|145964841|gb|EDK30093.1| Response regulator [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   +          S   D+  ++  L   G    +
Sbjct: 7   LIVEDDQEIARLTTLYLEAEGYEVSVVHEGNLALEAIRSIEPDLVLLDLML--PGMSGAQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117
           + R  R      ++ ++      + +  F  G DD V KPI    +LAR       A   
Sbjct: 65  ICREAREFYNGMILVLTASADEMSEVSLFKFGADDYVAKPIRGHALLARIEALLRRATPV 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V         I + S  +   + G+   L   E  IL  L+ N  + V + Q     
Sbjct: 125 TTTVETVSENQCEIVINSAAQSATLYGQNLKLTSAEFEILNLLVKNVCQVVTRDQCCQLF 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ D A  +  ++  +S LR+KLR +      + + R  GY +
Sbjct: 185 RGI-DYAFNDRSIDMRVSGLRRKLRVHAKDKQLIRTVRNKGYML 227


>gi|86751747|ref|YP_488243.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574775|gb|ABD09332.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +    ++       ++   D+  ++  L        +
Sbjct: 8   LVVDDEPAILRFLKPALEANGYDVSHAATVTEAIKRVAADAPDIVLLDLGLA--DGDGKD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRL 119
           + R +RA S +P++ +S        ++  D G DD VNKP +       +        + 
Sbjct: 66  VIRQVRAWSDLPILVLSAREREAEKIESLDLGADDYVNKPFNSGELMARMRAALRHRMQR 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G I + +        G+   L  +E  +L +L+ + G+ V   QI +A++G
Sbjct: 126 NAEPAALSVGGIEIDAVRHRVTRDGDEIKLTPKEFELLAFLVRHAGRVVTHRQILAAVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               + +   +  +I +LR+K+         + ++  +GY I
Sbjct: 186 PAHTS-DTQYLRVYIGQLRQKIEAHADEPRIILTEPGIGYRI 226


>gi|46199531|ref|YP_005198.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46197157|gb|AAS81571.1| probable two-component response regulator [Thermus thermophilus
           HB27]
          Length = 221

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++        +G  +   +  E    L S A   V  ++  L         
Sbjct: 9   LLVEDDPGVREALELGLSLEGHEVRAVDRPEEALGLLSWAE--VVVLDVLL--PQGDGFS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP++ ++    ++  +     G DD + KP   +E+LAR+ A+ RR +  
Sbjct: 65  LLRAIRERSEVPVLMLTALDGVEWRVKGLREGADDYLVKPYSLQELLARLEALVRRARRR 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   +R++    +         L  +   +L+  +    + ++K  +   ++G   
Sbjct: 125 EEVLAYKDLRLYPRRMEAFRGERRLALSPKAFLLLKAFLEAPEEVLSKEALMRKVWG--- 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E VE   +E H+S LRK L       P+ + R  GY +
Sbjct: 182 EEVEPATLEVHLSALRKAL---GEPSPIQTVRGYGYRL 216


>gi|71907507|ref|YP_285094.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71847128|gb|AAZ46624.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ DG        G  ++  N     + L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDDALLADGLARALRHSGYIVDTANDGLSADSLLANEAYDLVILDIGL--PGLDGC 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    Q P++ +S   +++  +   D G DD V KP+   E+ ARV A+ RR  
Sbjct: 61  EVLQRLRTRRQQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIRRRL 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +R+ + G+   +      L  RE   LE+L     + V+K Q+  A+Y 
Sbjct: 121 GEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQALYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             DE +  N +E  +S+LR KL        + + R LGY ++ 
Sbjct: 181 WQDE-ITPNAIEKLVSRLRVKLEEAGIT--IRTVRGLGYYLEK 220


>gi|186684285|ref|YP_001867481.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466737|gb|ACC82538.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+    + +       + G      +            +  +  ++  L   GE  L 
Sbjct: 10  LVIETDESLANQLACDLQEAGYESILAHDATSGLQYCRDRQPALIVLDRMLA--GESGLS 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R+     P++ +    ++   +   ++G DD + KP    + L  +    +    
Sbjct: 68  LCKNLRSTGMRSPVLILMARDTVDDRVACLEAGADDYILKPYRSEDFLKLIRLYLKPDVD 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +    R     G    L  +E  +L++LM +  + + + QI   ++G +
Sbjct: 128 TTEQLRFGDLILDIASRRAIHGGRAIDLTMKEFELLKFLMEHPREVLTREQILENVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV+E +I  LR K+ ++     + + R +GY +
Sbjct: 187 DFLGESNVIEVYIRYLRLKIEDEGQKRLIQTVRGVGYVL 225


>gi|291520902|emb|CBK79195.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 220

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KINMEELHRYDLILLDIM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYMPIKTVWGIGYKWEE 220


>gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 242

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G +++  N  +  + +  S   D+  ++  L   GE  L
Sbjct: 9   ILVVDDDVRLRELLQRYLTEQGFTVKTANDAKEMDSILGSDTIDLLVLDLML--PGEDGL 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112
            + R +R   + +P++ ++        +   + G DD + KP + RE        +    
Sbjct: 67  SICRRMRGNATMMPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVLRRHE 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +      +      G     +  R    QG    +   E  +L+  + +  + +++ +
Sbjct: 127 RLVPSAPANAAENITIGDFVFNASTRSLSRQGTAIAITSGEFALLKVFVDHPRQPLSRDR 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +  V +  ++  +S+LRK +  +      + +    GY  
Sbjct: 187 LMQLARGR-ELDVYDRSIDVQVSRLRKLIEPDPAHPRYLQTMWGFGYVF 234


>gi|171057424|ref|YP_001789773.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774869|gb|ACB33008.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 235

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +LIDD A +           G  +     L     L      D   ++  L  G G  + 
Sbjct: 6   LLIDDDARLTHMVRDYLQAAGHVVSVAGDLAGGRGLLQRESFDALILDLMLPDGDGLDLT 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R       +PL+ ++        +   + G DD + KP   RE+LAR+ A+ RR  V
Sbjct: 66  RELRADSRWRSLPLLMLTARGEPLDRIVGLELGADDYLPKPFEPRELLARLKALLRRASV 125

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + V ++ R   + G V  L   +  IL  L  + G+ + + QI  A+ G
Sbjct: 126 QADDTTLRFGRLEVDANARQVRIDGAVCELTGYQFDILLVLAQSPGRVLTRDQIMDALKG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +A +   ++ HIS++R  +  +      + + R  GY  
Sbjct: 186 HPMDAFD-RSIDVHISRIRAAIEVDPKTPRRILTVRGAGYVF 226


>gi|26987916|ref|NP_743341.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982625|gb|AAN66805.1|AE016309_7 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +               ++ D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            + R +R+  Q P++ ++        +   D G DD V KP+  R     +  +      
Sbjct: 66  SICRRVRSQYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSET 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G +R+ +  R+  +  ++  L   E  +L  L +N G+ + + QIF+A+ 
Sbjct: 126 VDSKRQDLAFGALRIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+     ++  ++  ISK+R K+ +       + + R  GY  
Sbjct: 186 GVG-YDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLF 227


>gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ DG   +    G ++   N+         S R + + +   +   G    E
Sbjct: 4   LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDAL----SQRFNAAVLVLDIGLPGIDGFE 59

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   ++   +   + G DD + KP    E++AR+ A+ RR   
Sbjct: 60  VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--YG 179
              +   G + + +  +  ++ G    L  RE  +LEYLM +  + V+K QI  A+  +G
Sbjct: 120 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E    N VE ++S++R K+ +      + + R  GY ++ 
Sbjct: 180 ---EDFTINAVEVYVSRIRLKIADSG--VAIRTIRGFGYMLEK 217


>gi|283785174|ref|YP_003365039.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282948628|emb|CBG88219.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 244

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V ++D   V     A        +      +  E      + D+  ++  L   G+  +
Sbjct: 4   IVFVEDDPEVGALIAAYLAKHDFDVVVEPRGDMAEARIFEVQPDLVLLDIML--PGKDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R ++   Q P++ ++   S    +   + G  D + K      +LAR+    R+   
Sbjct: 62  TLCRDLQGRWQGPVVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQHDR 121

Query: 122 SNNRA-------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + +                 G + V    R   + GE+  L   +  +L  L  + G+ +
Sbjct: 122 APHANGIQSAGLASHNPLRFGSLTVDPVNRSVRLCGELIALSTADFELLWELATHAGQVM 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +  +   + G+      +  V+  IS+LRKKLR+       + + R  GY  
Sbjct: 182 DRDALLKNLRGVS-YDGMDRSVDVAISRLRKKLRDNASEPYRIKTVRNKGYLF 233


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 26  LVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMML--PDMDGLA 83

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 84  ILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 143

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S +    G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 144 ADRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 204 WS-YDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 244


>gi|226947549|ref|YP_002802640.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843600|gb|ACO86266.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +           G +++   + E      +    DV  ++  L        
Sbjct: 5   IYIIEDDLSISLLLKDYITKYGFNVKIAENFENIMADFNEFNPDVVLLDVNL--PKYDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR   
Sbjct: 63  YWCRRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFG 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    I      + + +  + E + E   + ++E  +LEYLM    K V +  +  
Sbjct: 123 EYAPKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I+   +  VEEN +  ++S++RK+L      D +++ R +GY ++ 
Sbjct: 183 KIWDDIEF-VEENTLNVNVSRIRKRLHELGIEDGIETVRGVGYRLNK 228


>gi|331269514|ref|YP_004396006.1| regulatory protein VanR [Clostridium botulinum BKT015925]
 gi|329126064|gb|AEB76009.1| regulatory protein VanR [Clostridium botulinum BKT015925]
          Length = 226

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G       +G ++    + E         + D+  ++  L    E   
Sbjct: 4   ILIVEDDKLLNKGVKFALEIEGYTILDTYNYEEGYKAFLKDKVDLVLLDINL--PDESGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +L   IR +S++P+I I+   +    +D F+ G DD ++KP     +  R+ A+  R   
Sbjct: 62  KLSMEIRKNSEIPIIFITAKDTESDIIDGFNLGCDDYISKPFSIEVLKQRIKAVLRRTNL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V N       I +  +  D +  G    L  +E R+LE L+ N G+ + +  I   ++  
Sbjct: 122 VENTVFVYEDITIDFNKMDVKKDGISIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
               V+EN +  +I +LRKK+ +       + +   +GY
Sbjct: 182 DGNFVDENALNVNIRRLRKKIEDDSKNPKYIITVFSIGY 220


>gi|325957156|ref|YP_004292568.1| DNA-binding response regulator [Lactobacillus acidophilus 30SC]
 gi|325333721|gb|ADZ07629.1| DNA-binding response regulator [Lactobacillus acidophilus 30SC]
          Length = 226

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
              ++D   +++  +            F +           + D+  ++  L    G  +
Sbjct: 4   IWCVEDDESIREIEMYTLQTMNFKTRSFENGTSFFKALKEKKPDLVILDLMLPDEDGSDI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           L   R   A  ++P+I  S   +    +   DSG DD + KP    E+++RV A     +
Sbjct: 64  LRRIRGNSATKELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R E   +++     +  V GE   L  +E  +L+ L+ +     ++ +I   I+
Sbjct: 124 RREEKDRIERDGVKILLKRHEVLVNGEEIELTLKEYGLLKLLITHPETVFSREEIMDQIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                  E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 184 -ETGFYGETRTVDVHVRTLRQKLSEAG--KHIETVRGVGYR 221


>gi|322804927|emb|CBZ02486.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 227

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D  ++    DG  ++G    +  +        D+  ++  L    E   E
Sbjct: 6   LVIEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINL--PDESGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116
           L R I     +P+I ++    +   +   + G DD + KP + +E+        R    Y
Sbjct: 64  LCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNKY 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             ++V  +GR      E   L  +E  +LE+ + NR    ++  + + 
Sbjct: 124 KEKSDEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFVKNRNIVFSREILLNK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 184 VWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGYVM 226


>gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 228

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       + G   +  +  E    +      D+  ++  L       L
Sbjct: 4   ILVIEDDHEAANYLAKGLSELGHRADKADDGETGLQMALDRDYDILIVDRML--PKRDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
            +   +R      P++ +S    +   +    +G DD + KP    E+ ARV       +
Sbjct: 62  AVIEELRKSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +              PL  RE R+LEYLM + G+ V +T +   +
Sbjct: 122 SASQVETTYTVGDLTLDRMAHSCRRGDMEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY+I
Sbjct: 182 W-EYHFDPQTNVIDVHISRLRGKIDKGFDVPLLHTIRGAGYTI 223


>gi|281358787|ref|ZP_06245262.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281314742|gb|EFA98780.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++ G +     +G  +E   +        ++ R D+  ++           
Sbjct: 6   ILVAEDDRNIRSGLVDALELEGYVMEEAAAGAGALRKFTAFRPDLVLLDVM--MPNLNGY 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114
           E+ R IR      P+I ++        +   + G DD V KP              R   
Sbjct: 64  EVCRRIRRSDVATPIIMLTAKGEEIDKVLGLELGADDYVTKPFGLRELSARIAAQLRRRR 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +     GP RV       E  G    L  RE  +L    A+ G+ + ++ I 
Sbjct: 124 VETAAPPPSGEFAFGPWRVDVKKLSAETAGAAVELTMREIELLRLFAAHPGEVLDRSFIM 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+G  +       ++ H+  LR+K+  +     +++   +GY  
Sbjct: 184 REIWG--NALTSSRTLDQHLVALRRKIEPEHLPRLIETVYGVGYRF 227


>gi|87200919|ref|YP_498176.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136600|gb|ABD27342.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 250

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G +   +N  +           D++  +          L
Sbjct: 18  IALVDDDRNILTTVSIALQTEGFATRLYNDGDTALKAMLENPPDLAVCDI--KMPRMDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------EI 108
           EL R +R  S++PLI ++              G DD + KP   R             EI
Sbjct: 76  ELLRRLREKSELPLIFLTSKDDEADEALGLSMGADDYIAKPFSQRLLVARIKAILRRSEI 135

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + R A   +  +        G + +               L   E  ILE L    G   
Sbjct: 136 VRREAEEEQPGEPLPEPIRRGRLVMDPARHAVTWNDAPVSLTVTEFLILEALAVRPGVVK 195

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + Q+  A Y   D  V++  ++SHI +LR+K R     F  +++    GYS 
Sbjct: 196 TRNQLMDAAY-HDDVFVDDRTIDSHIKRLRRKFRVADPAFGAIETLYGAGYSF 247


>gi|329927719|ref|ZP_08281831.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938297|gb|EGG34690.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 231

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +      +  + G   +   S      +L +     +  ++  L   G   
Sbjct: 7   ILVIEDDNEINQLLCEIITNSGYVPQPVFSGTEALLYLANDREWSMVLLDLML--PGLAG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115
            E+ R +    ++P+I IS     Q+ +     G DD + KP    E      +      
Sbjct: 65  EEILRKLGPDRRLPVIIISAKNEQQSKVAVLRMGADDYITKPFDVEEVAARLDIHLRRYR 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    +     I + SD +   V G    L  RE  +LE LM+   K   K  +F 
Sbjct: 125 RAAEPDLIRQLTYKDIHLDSDTKAVTVNGSGVVLTAREFTVLELLMSYPKKVFTKQNLFE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A++G      ++N +  H+S LRKKL +     + +++   +GY +
Sbjct: 185 AVWG-DAYLGDDNTITVHMSNLRKKLAQANPEAEYIETIWGMGYRL 229


>gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 219

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +     +G + E         +  +S   +   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSENWEAIVLDLGL--PKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR  +   P+I +S   +L   ++  ++G DD   KP    E++AR+ A   R  
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVIQIGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+        + + R LGY ++
Sbjct: 180 KQDFDRDSNTIEVFIGRIRKKI----APKVIKTVRGLGYQLN 217


>gi|300311273|ref|YP_003775365.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074058|gb|ADJ63457.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 234

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D   A    +G              L    R D+  ++  L   G    
Sbjct: 6   ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVML--PGLSGN 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR H+   +I ++        ++    G DD V KP H  E++ARV A+ RR+  
Sbjct: 64  EVLAAIRQHASTAVIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRMLR 123

Query: 122 SNNRAETGPIRVFS----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             + A    +                 D +   +   L R E  +L  +MA   +  ++ 
Sbjct: 124 PVSGAAQQAVLRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSRA 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +      +    E VV++H+  LR+KL      + V + R LGY  
Sbjct: 184 ELLAH--SQPESDAMERVVDAHLHNLRRKLEQAGIREVVVTVRGLGYRF 230


>gi|295699191|ref|YP_003607084.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438404|gb|ADG17573.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 228

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E    L +    DV  ++  L        
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTHLATEFDYDVIVLDVML--PKRDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A   R   
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|269795985|ref|YP_003315440.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098170|gb|ACZ22606.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +    +        +S++ DV  ++  L       L+
Sbjct: 12  LVVDDDAGLVRALAINLRTHGWVVTTATTGAEALDAAASSQPDVVLLDLGL--PDMSGLD 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S+VP++ +S        +D  D+G DD V KP    E+LAR+ A  RR    
Sbjct: 70  VIAGIRGWSRVPIVVLSARQLGDDKVDALDAGADDYVTKPFAMNELLARLRAAVRRAAPV 129

Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +             +    R  +  GE   L   E  +LE L+ NRGK V + Q+   ++
Sbjct: 130 DEVQTPVVEAGDLVIDLARRRVQRAGEDVRLSPTEWSLLEVLVRNRGKMVGRVQLLHEVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           G    + E N +  + ++LR+KL  +      + ++  +GY  + 
Sbjct: 190 GPS-YSAETNYLRVYTAQLRRKLEADPSAPVHIITQPGMGYVFEV 233


>gi|299822847|ref|ZP_07054733.1| response regulator [Listeria grayi DSM 20601]
 gi|299816376|gb|EFI83614.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 82/227 (36%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + ++    +  +           +   I+  L       +
Sbjct: 3   LLMIEDNHSVCEMMELFFMKETITATFIHDGQEGLDRFLEEDWEFVIIDLML--PSLDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
            + + IR  S VP+I ++   S    +   + G DD V KP     +      + R    
Sbjct: 61  TICKKIREASDVPIIILTAKESESDQVLGLEMGADDYVIKPFSPITLLARIKAVKRRHHK 120

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S+       +          +   +  L  +E  +L + + +  +  ++ Q+  
Sbjct: 121 VEGSQPSSIIRTKDFVVDLQTREVLHLGKPLGALTPKEFDLLYFFLQHPRQVFSREQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G +    +E  V+ HI +LR+K+        + +   +GY  + 
Sbjct: 181 QVWG-YQFYGDERTVDVHIKRLRQKI-ANQKQHYLFTIWGVGYKFEE 225


>gi|240146411|ref|ZP_04745012.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|257201459|gb|EEU99743.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|291526354|emb|CBK91941.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291526803|emb|CBK92389.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 220

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++      G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSNPL-KINMEELHRYDLILLDIM--MPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A   R  +
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   +GY  + 
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWEE 220


>gi|55981562|ref|YP_144859.1| hypothetical protein TTHA1593 [Thermus thermophilus HB8]
 gi|55772975|dbj|BAD71416.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 216

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++        +G  +   +  E    L S A   V  ++  L         
Sbjct: 4   LLVEDDPGVREALELGLSLEGHEVRAVDRPEEALGLLSWAE--VVVLDVLL--PQGDGFS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP++ ++    ++  +     G DD + KP   +E+LAR+ A+ RR +  
Sbjct: 60  LLRAIRERSEVPVLMLTALDGVEWRVKGLREGADDYLVKPYSLQELLARLEALVRRARRR 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   +R++    +         L  +   +L+  +    + ++K  +   ++G   
Sbjct: 120 EEVLAYKDLRLYPRRMEAFRGERRLALSPKAFLLLKAFLEAPEEVLSKEALMRKVWG--- 176

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E VE   +E H+S LRK L       P+ + R  GY +
Sbjct: 177 EEVEPATLEVHLSALRKAL---GEPSPIQTVRGYGYRL 211


>gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA]
 gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA]
          Length = 232

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 4/224 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + D +       G  +   +       L      D+   +  +    G  +
Sbjct: 5   ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   + +        I        +       +              +            
Sbjct: 65  ISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +++     + ++  E+  L  +   +L  L +N  +  +KT ++  I+  
Sbjct: 125 CETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIW-K 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
            D   + N +  HI  LR++L          + +   LGY I+ 
Sbjct: 184 EDYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEK 227


>gi|87303165|ref|ZP_01085963.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282332|gb|EAQ74292.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G ++E   + +        A  D+  ++  L       +E
Sbjct: 8   LIVDDDPALRRFLAGELAVEGYAVEMAGTGQQALIRLREAPWDLVLLDWIL--PDFTGVE 65

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+  +    P++ ++   ++   ++  D+G DD + KP    E+LARV A  RR   
Sbjct: 66  VCLRLRASELNTPVLMLTARDAVAERVEALDAGADDYLTKPFSIEELLARVRARLRRQGS 125

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N + E       RV +   +    GE   L  RE  +L  L+    +   +  +   ++
Sbjct: 126 ANGQGEVLSFADLRVNTASHEVSRGGEEIQLTVREYDLLLALLKEPRRVQERQMLLHNVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G      + N+++ +I  LRKK+        + + R +G+ +
Sbjct: 186 GEH-FVGDANLLDVYIRYLRKKIERYGLPTLIQTVRGVGFIL 226


>gi|150017695|ref|YP_001309949.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904160|gb|ABR34993.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G   +   ++                 ++  L       
Sbjct: 9   ILIVDDELSLLTMVKDIMLKEGFQTVFTASNCHMAMEKFKEVNPHAVILDVML--PDGDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113
             L + +R  S VP++ +S     +  L     G DD + KP   RE++        R  
Sbjct: 67  FSLIQKLRMISTVPVLFLSARDEDENRLLGLGLGADDYMTKPFLPRELILRLNAILRRTY 126

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G I +  +    + Q E   L  +E  +L+ L +N+G  V    +
Sbjct: 127 NSTIVKPEEKPTFYLGNIFIDMNSGTVKKQEEELTLTAKEYALLDKLYSNKGNIVTIDAL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A++   +    EN +  HI +LR+K+         + + R LGY +
Sbjct: 187 CKAVW-NDNFFGYENTLMVHIRRLREKIETEPSHPKYLLTVRGLGYKL 233


>gi|296166889|ref|ZP_06849306.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897766|gb|EFG77355.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 236

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD +++ +        +G ++                R DV  ++  L    G  VL
Sbjct: 14  LVVDDESVLAEMVSMALRYEGWNIATAGDGASALAAARGQRPDVVVLDVMLPDMSGLDVL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R    + Q+P++ ++   +++  +    +G DD V KP    E++ R+ A+ RR  V
Sbjct: 74  HKLRE--ENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGV 131

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    +        D  +    GE   L   E  +L ++M N  + ++K QI   +
Sbjct: 132 TTLDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDRV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+VE +IS LRKK+ +      + + R  GY +
Sbjct: 192 WS-YDFGGRSNIVELYISYLRKKI-DNGRDPMIHTLRGAGYVL 232


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      D++ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVML--PGIDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 65  QVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G  ++   +         S   D+  ++  L        
Sbjct: 3   LLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVML--PDVDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + + +R    QVP++ ++    +   +   + G DD + KP    E+LARV        
Sbjct: 61  RIVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APNHPDRIQIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFDPKLIHTVRGMGYTLD 222


>gi|302339190|ref|YP_003804396.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636375|gb|ADK81802.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 233

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++        +   +  F   +           D+  ++  L        
Sbjct: 4   ILLIEDNPFIREALSGYLQLEEHQIVEFEGTKGVIETIKRDIADLVILDIML--PDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
            L + IR  S VPL+ ++   S    +  F+ G DD V KP   +E        +     
Sbjct: 62  SLAKTIREFSNVPLMFLTAKDSESDRILGFEMGADDYVTKPFSTKELVLRVQALLKRYTY 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +       ++   E   + +        + G    L   E +IL YL       V++ +I
Sbjct: 122 SRSELTGKNSWYCEEHKLEIDQKTHHLLIDGNEAYLTGAEWKILLYLAKQESIVVSRERI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     +     E  V++HI+ LR KL      + +++ R  GY  
Sbjct: 182 LAECL-NYFFEGSERTVDTHIANLRSKL---GEGEWIETVRGYGYRF 224


>gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19]
 gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870]
 gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292]
 gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915]
 gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68]
 gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19]
 gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915]
 gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 225

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D  ++          +G  ++  + L+       SAR D+  ++  L     + 
Sbjct: 3   IILI-EDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLML--PDGQG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|319935984|ref|ZP_08010407.1| hypothetical protein HMPREF9488_01238 [Coprobacillus sp. 29_1]
 gi|319808934|gb|EFW05441.1| hypothetical protein HMPREF9488_01238 [Coprobacillus sp. 29_1]
          Length = 221

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 96/218 (44%), Gaps = 3/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++             +    +++    + +S+   +  I   +       +
Sbjct: 4   ILVVEDDQLIQRSLKEALELKDYEVIQAFNVKQTLEIMNSS---IDLIIMDIQLPDGNGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR + + PL+ ++   S Q+ ++   +G DD V KP   +E+ AR+ ++ RR+ V
Sbjct: 61  SLCQHIRENYRTPLLFLTCKNSEQSIVEGLSAGGDDYVCKPFGIQELYARIQSLLRRIPV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +   T  +++ +        G++  L      IL  L+ + G  + +  +   +    
Sbjct: 121 NQDIIYTADLKIDTKNYQVYKNGQLLDLTNVCYHILLCLIQHHGMVITRQNLLDLVESQT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              +E+N +  H+ ++R+ L    G   +++ R +GY 
Sbjct: 181 QHFIEDNTLSVHMKRIRQTLGTYHGQSYIETLRGVGYR 218


>gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora
           inyonensis]
          Length = 231

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++   +    D G ++   ++           R D+  ++  L        
Sbjct: 4   LLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALENRPDLVVLDLGL--PDLDGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ ARV A+ RR   
Sbjct: 62  ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +   +    RV    R   + GE   L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +      +  V+ H+S LR+KL  N      + + R +G  +
Sbjct: 182 WQIP-YGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRL 224


>gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V      +  ++G  +    +           + D+  ++  L  K     
Sbjct: 4   ILVIEDSKDVNSMLSEILTEEGFEVFSAYTGTDGFKEIKENQYDLILLDIMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           E+ + +R  S VP+I IS   ++   +D    G DD V KP    E++ARV+      R 
Sbjct: 62  EILKEVRKFSDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSRI 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        + V  D +   V G+   L  +E  I+E L+ NR K   K  ++  I+
Sbjct: 122 KAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                  ++N V++H+S LR KL+      + +++   LGY +
Sbjct: 182 -QEAYLGDDNAVKTHMSNLRSKLKTANAQQEYIETVWGLGYRL 223


>gi|254712298|ref|ZP_05174109.1| Probable transcriptional regulator ycf27 [Brucella ceti M644/93/1]
 gi|254715370|ref|ZP_05177181.1| Probable transcriptional regulator ycf27 [Brucella ceti M13/05/1]
 gi|261217099|ref|ZP_05931380.1| two-component system response regulator [Brucella ceti M13/05/1]
 gi|261319969|ref|ZP_05959166.1| two component system response regulator [Brucella ceti M644/93/1]
 gi|260922188|gb|EEX88756.1| two-component system response regulator [Brucella ceti M13/05/1]
 gi|261292659|gb|EEX96155.1| two component system response regulator [Brucella ceti M644/93/1]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +    + +    + S    D+  ++  L   G+  +
Sbjct: 7   ILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEILDVLSRTPIDLVILDVML--PGKSGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  EICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEG 124

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +            G   +               L   E  +LE  + +    +++ Q+
Sbjct: 125 NRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G       +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 185 MEMA-GHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQF 231


>gi|237742256|ref|ZP_04572737.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
 gi|229429904|gb|EEO40116.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
          Length = 233

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++             ++     E    + S    DV  ++  L    +   
Sbjct: 13  ILIIEDDKNIQRLLALELRYKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLML--PKKSGK 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E+ + +R  +  P+I I+   S+   ++  D G +D + KP    E+    RV+   +  
Sbjct: 71  EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      I++    +   +  E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 131 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +K     + + R  GY  
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKIDSKS--KYIHTIRGFGYIF 228


>gi|168217888|ref|ZP_02643513.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380085|gb|EDT77564.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G ++E  +  E           ++  ++  L        
Sbjct: 6   IFIIEDEEKIREELTKFLEKYGYTVESSDDFENIVDTSLRCNPNMILLDINL--PYYDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            + R IR  SQVP+I ++   S    L   + G DD V KP + +     I + +   Y 
Sbjct: 64  YICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYS 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          ++      +     EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFNDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +E +++N +  ++++LR+K+        + +KR  GY +
Sbjct: 184 W-QSNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGYIL 225


>gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
 gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        DG  +           +      D+  ++          +
Sbjct: 4   ILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESVDLLIMDIM--MPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RATLKIREKHNIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRRYMQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + A      +++ G               E   L   E  IL  L+ ++GK  +  QI
Sbjct: 122 LGSTAIKESEAIYTVGGLAINDDLKEVTVDGEPVKLTPIEYNILLLLVKHQGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  I+      V+ N V  HI  +R+K+  N      +     +GY I+ 
Sbjct: 182 YENIWNENAVGVD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D    +E  N              D+  ++  +       +
Sbjct: 10  ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSI--PKLNGV 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++        +   + G DD + KP   RE+ AR  A+ RR   
Sbjct: 68  EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQI 173
           +N +           G                   L  +E  +L  L    G+  +++++
Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
              I+G ++ +  E+ V SHI++LR K+         + +   +GY  + +
Sbjct: 188 LDVIWG-YNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237


>gi|332885319|gb|EGK05570.1| hypothetical protein HMPREF9456_02771 [Dysgonomonas mossii DSM
           22836]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++          G       + +    + +S +  +  ++  L       +
Sbjct: 6   ILIIDDETQIRRLLEITLSASGYKTIEATTGKEGLLMVASHQPSLIILDLGL--PDMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           ++ + +R     P+I +S   S +  +   D G +D ++KP    E+    R +    + 
Sbjct: 64  DVLKSLREWFYKPIIILSVRNSEEDIVHALDKGANDYLSKPFRTGELLARIRASLRQGQT 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G + V       +   E+  L   E  +L   + N+G  +    I   ++G
Sbjct: 124 ANESPVFQIGDLSVDIANHIAKKNDELLDLTPTEFSLLSLFVKNQGCVLTHQYILKEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +    +   +   +++LRKK+ +       + ++  +GY  
Sbjct: 184 -YGYVEQTQYLRVFVAQLRKKIEDNPTKPTLLVTESGIGYRF 224


>gi|294341285|emb|CAZ89694.1| Transcriptional regulatory protein cusR [Thiomonas sp. 3As]
          Length = 251

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +          A  D+  ++  L        
Sbjct: 27  LLIVEDEVKTGEYLQQGLRESGFVVDWARNGLDGHHHAMIAPYDLIVLDVML--PDIDGW 84

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
            + R +R      P++ ++   +++  +   + G DD + KP    E+LARV       R
Sbjct: 85  RILRSLRESGNNTPVLFLTARDAVEDRVKGLELGADDYLVKPFVFTELLARVRTLLRRGR 144

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ E   + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 145 APTQIDQLEVADLVLDLPRRRATRAGTRINLSSKEFALLELLIRRQGEVLPRSLIASQVW 204

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY++D 
Sbjct: 205 DM-NFDSDTNVIDVAIRRLRAKVDDGFEPKLIQTVRGMGYTLDV 247


>gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++           L       +  ++          + 
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIM--MPKMDGIN 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ET    V          +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINSREPRYLKVVWGIGYKI 228


>gi|74317305|ref|YP_315045.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056800|gb|AAZ97240.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D      G++G+           +   +S+R D+  ++  L   GE  L
Sbjct: 6   ILVVDDDQELLDMVCRYLGENGLDAHAAADSVHMDAWLASSRPDLIVLDVML--PGEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + + +++   VP++ +S   S    +   + G DD + KP H RE+             
Sbjct: 64  SVVKRLKSRLDVPVLMLSARSSDVDRILGLEMGADDYLTKPFHPRELLARIHARLRRSPA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E G  R+    RD    G+   L   +  +L  LM +  + + +TQ+   +  
Sbjct: 124 PRQEDALEAGSFRLDFVRRDAYKHGQPLALSTADFSLLSLLMRHSHRVLDRTQLVD-LAS 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +       ++  +++LR+K+ +       + + R  GY  
Sbjct: 183 AMERMPFNRSIDVRVARLRRKIEDDPAQPRYIRTVRGSGYLF 224


>gi|323975841|gb|EGB70937.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGL--PDISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR++  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVRKF 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +    I  F                   R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   +  V++HI  LR KLR       P+++ R +GYS+
Sbjct: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|256848039|ref|ZP_05553483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715099|gb|EEU30076.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 237

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 93/233 (39%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +  + E            +   +    +   L    +  +
Sbjct: 3   ILMVEDNHSVCEMMAMFFKKEKWTAEFVYDGVKAVDKFNEDPQRWDLVLLDLNLPKKDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR  S  VP+I ++   S    +   + G D+ V KP     ++AR+ A++RR+ 
Sbjct: 63  QVAADIRRISPVVPIIMLTARDSESDQVLGLEMGADEYVTKPFSPLTLIARIKALHRRIA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRV 168
           + N   +        D + P                 +  L  +E  +L+ L +   +  
Sbjct: 123 MGNVGGKEPASESDFDIQTPHFKLNTKTREAFLNDQPIKDLTPKEFDLLKTLASKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++  ++   +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 183 SREQLLQLVW-NYEYYGDERTVDAHIKKLRQKIEQ-VGPKVIQTVWGVGYKFD 233


>gi|256015256|ref|YP_003105265.1| transcriptional regulatory protein OmpR, putative [Brucella microti
           CCM 4915]
 gi|255997916|gb|ACU49603.1| transcriptional regulatory protein OmpR, putative [Brucella microti
           CCM 4915]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +    + +    + S    D+  ++  L   G+  +
Sbjct: 7   ILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVML--PGKSGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  EICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEG 124

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +            G   +               L   E  +LE  + +    +++ Q+
Sbjct: 125 NRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G       +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 185 MEMA-GHQAVYGYDRSVDILISRLRKKLEDDPRAPKLILTIRGGGYQF 231


>gi|238024425|ref|YP_002908657.1| putative two component response regulator transcription regulator
           protein [Burkholderia glumae BGR1]
 gi|237879090|gb|ACR31422.1| Probable two component response regulator transcription regulator
           protein [Burkholderia glumae BGR1]
          Length = 258

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   + D   A     G+             L    + D+  ++          
Sbjct: 30  LILIAEDEPEIADIVAAYLTRSGLRSVQATDGRQALELHERLKPDLVLLDV--QMPCLDG 87

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111
            ++   IR     P+I ++        L     G DD V KP +  E           + 
Sbjct: 88  WQVLTEIRRRGDTPVIMLTAMDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSM 147

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +V         +       +   Q     L   E ++L  L     +  ++ 
Sbjct: 148 ARGEREEQRVLRAAPFEIDLDHHEATVEVGKQRHALSLTLTEFKLLVQLARAPKRVFSRA 207

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +    L +    E  V+SHISKLRKKL ++         R +GY +
Sbjct: 208 ELLATC--LPEGDTLERTVDSHISKLRKKLEDRGVTGIPVGIRGVGYRL 254


>gi|192360772|ref|YP_001980561.1| response regulator (activator) in two-component regulatory system
           with RstB (OmpR family) [Cellvibrio japonicus Ueda107]
 gi|190686937|gb|ACE84615.1| response regulator (activator) in two-component regulatory system
           with RstB (OmpR family) [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +   ++   +         +    +  ++  L   G+  L
Sbjct: 6   ILLVEDDRRLAQLVSDFLTANDFRVDVEENGNRVLRQVQNLNPSLVILDLML--PGKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117
            L + +R   + P++ ++   S    +   + G DD V KP   R     I A +   Y+
Sbjct: 64  TLCKELRPQYKGPILMLTARDSDLDQVLGLEYGADDYVIKPAEPRVLLARIRALLRRYYQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +      G + +    R   +  E   L   E  +L  L A+ G  +++  +F  I
Sbjct: 124 SDENTLANINFGQLHIQPSLRKVTLATEEVHLSSHEFDLLLTLAASAGNILSRDFLFQQI 183

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Y   +    +  ++  IS+LRKKL  +      + +    GY  
Sbjct: 184 YNR-EYDGLDRTIDVRISQLRKKLQDDPNNPTRIKTIWGKGYLF 226


>gi|163850668|ref|YP_001638711.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|188580441|ref|YP_001923886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|218529393|ref|YP_002420209.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137722|ref|YP_002962194.1| Two-component response regulator ChvI [Methylobacterium extorquens
           AM1]
 gi|254560295|ref|YP_003067390.1| Two-component response regulator ChvI [Methylobacterium extorquens
           DM4]
 gi|163662273|gb|ABY29640.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|179343939|gb|ACB79351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
 gi|218521696|gb|ACK82281.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007691|gb|ACS38917.1| Two-component response regulator ChvI [Methylobacterium extorquens
           AM1]
 gi|254267573|emb|CAX23415.1| Two-component response regulator ChvI [Methylobacterium extorquens
           DM4]
          Length = 237

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  ++ +            +  D++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALETEGYRIQTYTDGASALDGLRHSPPDLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD ++KP   R ++ RV A+ RR   
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAVLRRFAP 121

Query: 122 SNNRAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            +                       +  +      +GE   L   E  IL+ L    G  
Sbjct: 122 KDATPGAAAREADAAARSLERGQLMMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++  +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 KSRNALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVTDQSFDMIETLYGVGYRF 234


>gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++          +G++++        ++L  +   DV  ++  L  +    L
Sbjct: 3   ILIAEDEPVLASQLKKTLMSEGLTVDVAVDGAEAQYLGETEPYDVIILDLGLPIR--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG-VDDVVNKPIHHREILARVAA-IYRRL 119
            + + +R+      I I    +  T          DD + KP H  E+ ARV A I R+ 
Sbjct: 61  TVLKNLRSGGNDTSILILTARNDWTDRVDGLDAGADDYLTKPFHMAELSARVRALIRRKA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        +   +      V G    L  +E  +L YL  N G+ V++T++   IY 
Sbjct: 121 GKATPVFSKDDVTFDTRTNQVMVDGVPMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +   +++LRKKL    G D +++ R  GY I
Sbjct: 180 QHDGDRDSNTIAVFVNRLRKKL----GSDLIETVRGRGYVI 216


>gi|170720379|ref|YP_001748067.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758382|gb|ACA71698.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +               ++ D+  ++  L   GE  L
Sbjct: 8   ILIVEDDQRLAELTAEYLQANGFDVAVEGDGARAARRIVDSQPDMVILDLML--PGEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118
            + R +R     P++ ++        +   D G DD V KP+  R     +  +      
Sbjct: 66  SICRRVRGQYAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSEP 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + + +  R+  +  ++  L   E  +L  L +N G+ +++ QIF+A+ 
Sbjct: 126 AQGKTQELAFGALSIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLSREQIFTALR 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+     ++  ++  ISK+R K+ +       + + R  GY  
Sbjct: 186 GVG-YDGQDRSIDVRISKIRPKIGDDPIHPRLIKTLRSKGYLF 227


>gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
 gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A VK+                ++ E       S   DV  ++  L       
Sbjct: 5   LILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHNPDVILLDLGL--PDMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113
           +++ R IR+ S+ P+I +S        +D  D+G DD + KP          R    R+ 
Sbjct: 63  IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLN 122

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +    G +R+        + G+   L   E ++L  L  N GK +  T I
Sbjct: 123 DAGDSAAAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G      +   +   ++ LRKK+  +      + +   +GY +
Sbjct: 183 TKKIWGSA-WDNDVASLRVFMATLRKKIEPDPSNPQYIQTHIGVGYRM 229


>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 223

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PEMDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|146306182|ref|YP_001186647.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574383|gb|ABP83915.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 243

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++         G ++      E           D+  ++  L    E   
Sbjct: 8   ILLVDDDQEIRELLDTYLSRAGFAVRAVADGEGLRAALVEEPADLVILDVML--PDEDGF 65

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R IR H +    P+I ++        +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 66  SLCRWIREHQRFAAVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQ 172
              +   A +  +       D               L   +  +L+  +    + + +  
Sbjct: 126 ASFAKEPAASEVLAFGEWRLDMISHRLFHQDGEEVILSGADFALLKLFLDRPQQILDRDT 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I S   G  +    E +V+  +S+LR++LR+       + + R  GY +
Sbjct: 186 IASVTRGR-EVMPLERIVDMAVSRLRQRLRDTDKPPRLIRTVRGAGYLL 233


>gi|114328635|ref|YP_745792.1| two-component response regulator chvI [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316809|gb|ABI62869.1| two-component response regulator chvI [Granulibacter bethesdensis
           CGDNIH1]
          Length = 260

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +   E      ++   D++ ++          +
Sbjct: 32  IALVDDDRNILTSVSMTLEAEGFQVRTYTDGESALQGLTTRPVDLAVLDI--KMPRMDGM 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILARV 112
           EL + +RA + +P+I ++        L     G DD + KP   R               
Sbjct: 90  ELLQRLRARTALPVIFLTSKDEEVDQLMGLRLGADDYITKPFSQRLLIERIRALLRRNDA 149

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    +          G + +          G+   L   E  +++ L A  G   ++ Q
Sbjct: 150 SRADGQGTTGGGLLTRGDLTLDESKHQCLWHGKDIQLTVTEFLLVKALAARPGVVKSRDQ 209

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  A YG  +  V++  ++SH+ ++RKK R     F+ +++   +GY 
Sbjct: 210 LIDAAYGE-NIYVDDRTIDSHVKRVRKKFRAVDDDFNQIETLYGIGYR 256


>gi|325912950|ref|ZP_08175324.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 60-B]
 gi|325477764|gb|EGC80902.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 60-B]
          Length = 245

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++                       ++ I   ++      L+
Sbjct: 21  LVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFR-MDPSITCIILDIMMPEMSGLD 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +R  S+VP++ +S        +    +G DD V KP +  E++AR+ ++ RR + +
Sbjct: 80  LIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSEKN 139

Query: 123 NNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   I V     + +             L   E  IL  L ++ G+  +  +IF  
Sbjct: 140 IVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSANEIFER 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +  V    V  H+S LR K++    G + V +   +GY I+
Sbjct: 200 VW-KQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGYKIE 244


>gi|313675771|ref|YP_004053767.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312942469|gb|ADR21659.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 227

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +           G  ++     E       +   D+  ++           
Sbjct: 7   LLLAEDEPSLGLILKESLESRGFKVDHCEDGEAAWKCYQAKEYDLLILDVM--MPKLDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A   +P+I ++   +    ++ F+ G +D + KP    E++ RV A+  R  
Sbjct: 65  SLAQKVRKADGYIPIIFLTAKSTTNDVVEGFEKGGNDYIKKPFSMEELIVRVKALLERKS 124

Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++      +       +  +++ +   L  +E  +L+ LM ++ +   ++ I   ++
Sbjct: 125 NPIHQEWITIGKYLFHPGKQILKIEKDETYLTSKESEVLKELMMHQNELTDRSTILEKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D       ++ +ISKLRKKL        + + R  GY +
Sbjct: 185 GSADFF-NARSMDVYISKLRKKLEKDPELQ-ILNIRGYGYKL 224


>gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  ++     E    L      D   ++  L   G    
Sbjct: 3   LLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVIL--PGMGGY 60

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRR 118
           E  R +R    S VP+I I+    + + ++    G DD + KP   RE+ ARV A I R 
Sbjct: 61  EFCRFLREEIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRRN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S      GP+   S         +   L  RE  ILE  + N G   ++ +I   I+
Sbjct: 121 QLRSEPVIRYGPLTYDSRSGVFSCSKKELSLTSRESSILELFLRNPGTVFSREEITDKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                    N+V+ +I  +R+KL      D + +    GY
Sbjct: 181 -ETGFESRSNIVDVYIRYIRRKLEAAGILDIIQTVPRKGY 219


>gi|148558726|ref|YP_001257449.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
 gi|148370011|gb|ABQ62883.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +    + +    + S    D+  ++  L   G+  +
Sbjct: 7   ILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVML--PGKSGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  EICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEG 124

Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +                  +  R          L   E  +LE  + +    +++ Q+
Sbjct: 125 NRSPQRALTQIYRFAGGTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G       +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 185 MEMA-GHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQF 231


>gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 237

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +   + G ++    +      L +    D+  ++  L        
Sbjct: 12  IFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLML--PDICGE 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S+VP+I ++     +  L+  D G DD + KP   R+++ARV A+ RR + 
Sbjct: 70  DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      +D        + +  G +  L   E  IL  ++   GK   + ++  
Sbjct: 130 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              G  +    +  ++SHI  LR K+ +     + + + R +GY  
Sbjct: 190 VTLGQ-NFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234


>gi|333023815|ref|ZP_08451879.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332743667|gb|EGJ74108.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +    +              +  ++  L        
Sbjct: 16  LLVVDDEPAILDVLATSLRFLGYEVAEATTGRAALTAAREGGFHLVLLDVVL--PDLDGF 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--HREILARVAAIYRR 118
            + R +R    +VP++ ++   S +  +   D G DD + KP          R     R 
Sbjct: 74  AVVRRLREGGGRVPVVFLTARESPEDIVAGLDLGADDYITKPFRLAEVAARVRAVLRRRE 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + + +D  +    G +  L   E R+L +L+A++G+ +   Q+   ++
Sbjct: 134 APAAARVLSCADLELDTDTYEVRRDGRLVDLSPTEYRLLRHLLAHQGRVLTHGQLLEHVW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G   E  +  VV+++IS LR KL +  G   ++++R +GY++
Sbjct: 194 GQ--EGGDPGVVKTYISYLRHKL-DGAGPSLIETRRGIGYTL 232


>gi|317125394|ref|YP_004099506.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589482|gb|ADU48779.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   +         ++   D+  ++  L   G   L
Sbjct: 4   ILVVEDDLTINQTVTDRLRAEGFDVVQAHDGPRAVAAHATHEPDLVVLDVML--PGFDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114
           E+ R I+A   VP++ ++              G DD V KP   RE++        RV  
Sbjct: 62  EVCRRIQASRAVPVLMLTARDDETDLPVGLAVGADDYVTKPFRMRELVARVRALLRRVER 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + +           + V    R   V      L   E  +L  L+   G   ++ ++ 
Sbjct: 122 AGQLVAGDQAVVRADGVCVDRATRRVTVDAVPVHLTPLEFDLLLVLLEPCGTVRSREELM 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G  D A     ++SH+  LR K+        V +   +GY+ +
Sbjct: 182 REVWGWADAAR-TRTLDSHVKSLRAKIGAH----RVRTVHGVGYAYE 223


>gi|255281667|ref|ZP_05346222.1| phosphate regulon response regulator PhoB [Bryantella formatexigens
           DSM 14469]
 gi|255267734|gb|EET60939.1| phosphate regulon response regulator PhoB [Bryantella formatexigens
           DSM 14469]
          Length = 221

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 88/221 (39%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            ++I+D   + +         G +   F   +            D + ++  L   G+  
Sbjct: 5   ILVIEDAEHINELICINLETAGYTAVPFYDGDAVSAHLKEEVHYDCALLDIML--PGKDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   ++A   +P+I ++    L + +     G +D + KP    E+L RV  +  R +
Sbjct: 63  FALLPELKA-KNIPVIFLTARGDLPSKVRGLKDGAEDYLVKPFEMLELLVRVEKVLGRCR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +F   R  +  G   P    E   L  L+  +   +++ ++  +++G+
Sbjct: 122 KEEESLRVRDVEIFPKERIVKKAGVEIPFKPMEFDCLMLLVKYKNIAISREELLRSLWGV 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   E   ++ HI+++RKKL      D + +   +GY ++
Sbjct: 182 -DFEGETRTIDVHIARIRKKLDF---SDVIKTVPRIGYRLE 218


>gi|170720861|ref|YP_001748549.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169758864|gb|ACA72180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  + L  S   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELVADGETGQHLALSGDHDLLILDVML--PGRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV +      
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     +R+    R  E  G+   L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQETQLALADLRLDLFRRRAERAGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHRNKLIHTVRGMGYVLEE 223


>gi|167755208|ref|ZP_02427335.1| hypothetical protein CLORAM_00713 [Clostridium ramosum DSM 1402]
 gi|237734957|ref|ZP_04565438.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167705258|gb|EDS19837.1| hypothetical protein CLORAM_00713 [Clostridium ramosum DSM 1402]
 gi|229381733|gb|EEO31824.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 227

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           +     +      L  + R D+  ++  L     + +
Sbjct: 6   ILIVEDDKTIQNFLKVTLKTQNYNYIIAETGLSGLSLFYANRPDLVLLDLGL--PDIEGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118
           E+ + IR +S +P+I +S   S    +   D G DD V KP +  E    +        +
Sbjct: 64  EVLKQIRQNSSIPIIVVSARSSETEKVMALDYGSDDYVTKPFNAAELLARIRAALRHCLK 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KVS    E   ++V  + R   V+ +   L   E ++L  L+ NRGK +    I   ++
Sbjct: 124 EKVSEPIFELDYLKVDFERRHVWVKDQEIHLTPIEYKMLVLLITNRGKVLTHHFIQENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G ++   +   +   ++ +R+K+  +      + ++  +GY  
Sbjct: 184 G-YETTDDYQSLRVFMANIRRKIEIDSSSPHFIITEVGVGYRF 225


>gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104]
 gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium
           104]
          Length = 254

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  ++          A  DV  ++  L       L 
Sbjct: 32  LLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIML--PDVDGLR 89

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117
           +   +R   +  P + ++   S+   +    +G DD + KP         +   +    +
Sbjct: 90  ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRASQ 149

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +    + G + V +  R+         L   E  +L +LM N  + +++T+I   +
Sbjct: 150 QPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDRV 209

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 210 W-NYDFAGRTSIVDLYISYLRKKI-DSGREPMIHTVRGVGYML 250


>gi|330806958|ref|YP_004351420.1| response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375066|gb|AEA66416.1| Putative response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 246

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G       + E  + L +    ++  ++  L   GE  L
Sbjct: 13  ILIVDDDPGLSSLLERFFVSKGYRARTVPNTEQMDRLLAREVFNLVVLDLML--PGEDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A++Q+P+I ++      + +   + G DD + KP +  E++ARV A+ RR  
Sbjct: 71  TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130

Query: 121 VSNNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                A        + G           +   EV  L   E  +L+ L+ N  + + + +
Sbjct: 131 APVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMNARQPLTRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  +    E  ++  IS+LR+ +  +      + +   +GY  
Sbjct: 191 LMNLARGR-EWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|291524414|emb|CBK90001.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 222

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D   +++       +    +  F + +           D+  ++  L    G  
Sbjct: 3   LIYIVEDDESIREIETIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   R   A   +P+I ++   +    +   D G DD + KP    E++ RV A+ RR 
Sbjct: 63  IVRKLRKRPATQDIPIIMVTAKTTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLRRT 122

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  +   + +  +     V  E   L  +E  +L  LM ++G  + +  I  +++
Sbjct: 123 AKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRSVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D   E   V+ HI  LR KL +      + + R +GY I+
Sbjct: 183 DT-DFEGETRTVDMHIKTLRHKLGDYGS--RIKTVRNVGYVIE 222


>gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 222

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D +++ DG  A     G  ++        E    +     + ++  L G  G +V
Sbjct: 3   ILLAEDDSMLGDGLRAGLRQMGFQVDWVRDGVAAERELRAVDYVAAVLDLGLPGKDGMEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R   A +  P++ ++   ++   +   D+G DD V KP+   E+ AR+ + + R  
Sbjct: 63  LQALRA--ARNTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDLHELAARLRSLVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ +  + G + +    R      E  PL  RE  +L  LM + G+ +++ Q+   +Y 
Sbjct: 121 GVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSAGRVLSREQLEQQMYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   VE N +E HI  LR+KL+     D + + R +GY ++
Sbjct: 181 -WGLEVESNTIEVHIHHLRRKLQA----DVIQTVRGVGYMLN 217


>gi|191637842|ref|YP_001987008.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Lactobacillus casei BL23]
 gi|190712144|emb|CAQ66150.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Lactobacillus casei BL23]
 gi|327385069|gb|AEA56543.1| hypothetical protein LCBD_1045 [Lactobacillus casei BD-II]
          Length = 215

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 10/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A    DG ++    SL       +    DV  ++  L       L 
Sbjct: 4   LIVEDEPALGETLRAYLAKDGQAV-LATSLAQANERVAQISPDVIILD--LSMPDGDGLT 60

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
                R H    +I ++      T L       DD V KP+  R + AR+       ++ 
Sbjct: 61  WLAQWRKHLTAKVIVLTANDEELTMLKG-LRLADDYVVKPVSLRVLKARI-----AKQLP 114

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +               L   E R+L Y  AN  + +A+ Q+ +A++   +
Sbjct: 115 MTVQQFGAVSLNLATGQVTKNETAVVLTAAEYRLLAYFFANPNQILARDQLLAALWDTRE 174

Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + V +N +   I +LR+KL +       + + R +GY ID
Sbjct: 175 QFVADNTLTVTIKRLREKLEDDPAHPTLIRTVRGMGYFID 214


>gi|124267939|ref|YP_001021943.1| two-component system response regulator [Methylibium petroleiphilum
           PM1]
 gi|124260714|gb|ABM95708.1| two-component system response regulator [Methylibium petroleiphilum
           PM1]
          Length = 225

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ DG  A     G +++ F      +   S    D   ++  L   G   L
Sbjct: 3   ILIVEDDRLLGDGLAAGLRSLGFAVDWFTDGAQADAALSHTPYDAIVLDLGL--PGRDGL 60

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YR 117
                 R        P++ ++    +   +   D+G DD + KPI   E+ AR+ A+  R
Sbjct: 61  AWLARWRGPGPLQSTPVLVLTARDGIDHRIAGLDTGADDYLIKPIETTELAARLRAVLRR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G +      +    +G+   L  RE  +LE L+AN  + + K+ I   +
Sbjct: 121 SQGRPQPLWQHGALSYQPAAKAVLWRGKPVVLTARECALLELLLANPQRVLPKSLITEKL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  F++ +E N +E HI  LR+K+        V + R +GY++
Sbjct: 181 YS-FEQEIESNALEVHIHHLRRKID----PKLVRTVRGMGYAL 218


>gi|332798879|ref|YP_004460378.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696614|gb|AEE91071.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 224

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +       F +    +            QS  + D+  ++          L
Sbjct: 5   ILIVDDEADIVAMLKGFFENRNYDVLTATDGIEAIK-QSERQPDIILLDIN--MPQLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---VAAIYRR 118
            + R IR +   P++ ++        +  F  G DD + KP    E+ AR        +R
Sbjct: 62  SVCRRIRDYVSCPILFLTARIEDADKVKGFSVGGDDYILKPFSIIELEARVAAHLRREKR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +    R      EV P  ++E  I+E L  N G+   K +I+  ++
Sbjct: 122 RGIEAKVKFDEGLTIDYSERCVYWNNEVIPFVKKEFDIIELLSQNVGQVFDKERIYERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   E +V+  HI ++R +L        +++    GY 
Sbjct: 182 G-YDSEGESSVIFEHIRRIRSRLAAAHCKPYIETVWGCGYK 221


>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
          Length = 244

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +  +     +G  +   ++             D   ++  L       LE
Sbjct: 22  LVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWML--PDFDGLE 79

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+ +  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 80  VLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAGA 139

Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +        +  D R+    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 140 TRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDRV 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 200 WS-YDFGGQANVVELYISYLRKKI-DAGREPMIHTMRGAGYVL 240


>gi|320352638|ref|YP_004193977.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121140|gb|ADW16686.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + D        +G ++   +  +       +       ++  L   G    
Sbjct: 3   ILLIDDDTELCDLLTEYLEQEGFAVSACHEAQQGLTTALAGDHSFLILDVML--PGFNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 61  DLLRKIRQASTVPVLMLTARGDEVDRIVGLELGADDYLPKPFNPRELVARIRAIQRRGEN 120

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 T         I +    R         PL   E  +L  L+   G+ V + ++ 
Sbjct: 121 GLGNRRTAPGKLLADDIVLDPGTRTVWRHDVEIPLTTVEFALLHALLKRIGQVVNREELA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
               G   E  +   ++ HIS LRKKL     G + + + R +GY 
Sbjct: 181 MEALGRKLELFD-RSIDVHISSLRKKLGRNVNGIERIKTVRSVGYM 225


>gi|315653104|ref|ZP_07906029.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|315489469|gb|EFU79106.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 245

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++                       ++ I   ++      L+
Sbjct: 21  LVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFR-MDPSITCIILDIMMPEMSGLD 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +R  S+VP++ +S        +    +G DD V KP +  E++AR+ ++ RR + +
Sbjct: 80  LIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSEKN 139

Query: 123 NNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   I V     + +             L   E  IL  L ++ G+  +  +IF  
Sbjct: 140 IVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSANEIFER 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +  V    V  H+S LR K++    G + V +   +GY I+
Sbjct: 200 VW-KQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGYKIE 244


>gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I      G +++   +      L ++    V+ I+  L   G   L
Sbjct: 3   ILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVML--PGLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++   +R      P+I +S   S++  +   ++G DD ++KP    E+    +       
Sbjct: 61  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R+         L  RE  +LEY M N GK ++KT I   ++
Sbjct: 121 SVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+V+  + +LR K+        + + R +GY +
Sbjct: 181 D-YHFDPQTNLVDVLVCRLRNKIDRDWDRKMLHTLRGVGYVL 221


>gi|291527568|emb|CBK93154.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 222

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  +++D   +++       +    +  F + +           D+  ++  L    G  
Sbjct: 3   LIYIVEDDESIREIETIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   R   A   +P+I ++   +    +   D G DD + KP    E++ RV A+ RR 
Sbjct: 63  IVRKLRKRPATQDIPIIMVTAKSTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLRRT 122

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  +   + +  +     V  E   L  +E  +L  LM ++G  + +  I  +++
Sbjct: 123 AKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRSVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D   E   V+ HI  LR KL +      + + R +GY I+
Sbjct: 183 DT-DFEGETRTVDMHIKTLRHKLGDYGS--RIKTVRNVGYVIE 222


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVML--PGIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+        
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +   +GP  +          G++  L   E  IL YLM    K V++ +I + I
Sbjct: 122 VHDEKADMITSGPFSLNVIEERLYKNGQLVDLTPTEYMILHYLMNQAAKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+KL  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKLECNPSEPEXILTVWGKGYV 223


>gi|160941017|ref|ZP_02088356.1| hypothetical protein CLOBOL_05911 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436107|gb|EDP13874.1| hypothetical protein CLOBOL_05911 [Clostridium bolteae ATCC
           BAA-613]
          Length = 228

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 84/220 (38%), Gaps = 6/220 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +  G        G  ++   ++   + L ++   D++ ++  L        +  R
Sbjct: 8   EDDLSLISGLSFAVKKQGYEIDAARTILEADTLWANGSYDLAILDVSL--PDGSGFDFCR 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRRLKVS 122
            IR  S+VP++ ++        +   D G DD + KP         +  +         +
Sbjct: 66  KIRRMSKVPVMFLTAADEETDIIMGLDMGGDDYITKPFKLAVFLSRINALLRRSENFNTA 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                +  I +          G+   L   E ++L   M +  + ++  QI S ++   +
Sbjct: 126 AAEISSNGIHIQLLKGTVYKNGKRLDLTASEYKLLCLFMEHPDQILSPDQILSKLWDCSE 185

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + ++ + +  +I +LR K+ +     + + + R +GY  +
Sbjct: 186 QYIDNSSLTVYIRRLRIKIEDNPGAPERIITVRGMGYKWN 225


>gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++           L       +  ++          ++
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIM--MPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  ET    V          +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINSREPRYLKVVWGIGYKI 228


>gi|17989136|ref|NP_541769.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23500221|ref|NP_699661.1| transcriptional regulatory protein OmpR [Brucella suis 1330]
 gi|62317658|ref|YP_223511.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
           str. 9-941]
 gi|83269641|ref|YP_418932.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|163844637|ref|YP_001622292.1| hypothetical protein BSUIS_B0474 [Brucella suis ATCC 23445]
 gi|189022907|ref|YP_001932648.1| Response regulator receiver [Brucella abortus S19]
 gi|225686276|ref|YP_002734248.1| putative transcriptional regulator ycf27 [Brucella melitensis ATCC
           23457]
 gi|237817205|ref|ZP_04596197.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
           2308 A]
 gi|254691154|ref|ZP_05154408.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 6
           str. 870]
 gi|254698937|ref|ZP_05160765.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254699728|ref|ZP_05161556.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 5 str.
           513]
 gi|254702863|ref|ZP_05164691.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 3 str.
           686]
 gi|254706012|ref|ZP_05167840.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           M163/99/10]
 gi|254711685|ref|ZP_05173496.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           B2/94]
 gi|254732384|ref|ZP_05190962.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 4
           str. 292]
 gi|256029680|ref|ZP_05443294.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           M292/94/1]
 gi|256043373|ref|ZP_05446306.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256111617|ref|ZP_05452612.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 3
           str. Ether]
 gi|256157833|ref|ZP_05455751.1| Probable transcriptional regulator ycf27 [Brucella ceti M490/95/1]
 gi|256253205|ref|ZP_05458741.1| Probable transcriptional regulator ycf27 [Brucella ceti B1/94]
 gi|256256340|ref|ZP_05461876.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 9
           str. C68]
 gi|256262586|ref|ZP_05465118.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544890|ref|ZP_05820711.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564579|ref|ZP_05835064.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756755|ref|ZP_05869103.1| two-component system response regulator [Brucella abortus bv. 6
           str. 870]
 gi|260760185|ref|ZP_05872533.1| two-component system response regulator [Brucella abortus bv. 4
           str. 292]
 gi|260763423|ref|ZP_05875755.1| two-component system response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882570|ref|ZP_05894184.1| two-component system response regulator [Brucella abortus bv. 9
           str. C68]
 gi|261220313|ref|ZP_05934594.1| two-component system response regulator [Brucella ceti B1/94]
 gi|261313453|ref|ZP_05952650.1| two-component system response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319310|ref|ZP_05958507.1| two-component system response regulator [Brucella pinnipedialis
           B2/94]
 gi|261750193|ref|ZP_05993902.1| two-component system response regulator [Brucella suis bv. 5 str.
           513]
 gi|261753466|ref|ZP_05997175.1| two-component system response regulator [Brucella suis bv. 3 str.
           686]
 gi|265986690|ref|ZP_06099247.1| two-component system response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989794|ref|ZP_06102351.1| two-component system response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993097|ref|ZP_06105654.1| two-component system response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265996340|ref|ZP_06108897.1| two-component system response regulator [Brucella ceti M490/95/1]
 gi|294853717|ref|ZP_06794389.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
 gi|297249702|ref|ZP_06933403.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|17984986|gb|AAL54033.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23463825|gb|AAN33666.1| transcriptional regulatory protein OmpR, putative [Brucella suis
           1330]
 gi|62197851|gb|AAX76150.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
           str. 9-941]
 gi|82939915|emb|CAJ12928.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|163675360|gb|ABY39470.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021481|gb|ACD74202.1| Response regulator receiver [Brucella abortus S19]
 gi|225642381|gb|ACO02294.1| Probable transcriptional regulator ycf27 [Brucella melitensis ATCC
           23457]
 gi|237788018|gb|EEP62234.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
           2308 A]
 gi|260098161|gb|EEW82035.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152222|gb|EEW87315.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260670503|gb|EEX57443.1| two-component system response regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673844|gb|EEX60665.1| two-component system response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676863|gb|EEX63684.1| two-component system response regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872098|gb|EEX79167.1| two-component system response regulator [Brucella abortus bv. 9
           str. C68]
 gi|260918897|gb|EEX85550.1| two-component system response regulator [Brucella ceti B1/94]
 gi|261298533|gb|EEY02030.1| two-component system response regulator [Brucella pinnipedialis
           B2/94]
 gi|261302479|gb|EEY05976.1| two-component system response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739946|gb|EEY27872.1| two-component system response regulator [Brucella suis bv. 5 str.
           513]
 gi|261743219|gb|EEY31145.1| two-component system response regulator [Brucella suis bv. 3 str.
           686]
 gi|262550637|gb|EEZ06798.1| two-component system response regulator [Brucella ceti M490/95/1]
 gi|262763967|gb|EEZ09999.1| two-component system response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000463|gb|EEZ13153.1| two-component system response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092372|gb|EEZ16625.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264658887|gb|EEZ29148.1| two-component system response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819372|gb|EFG36372.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
 gi|297173571|gb|EFH32935.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|326410637|gb|ADZ67701.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553929|gb|ADZ88568.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +    + +    + S    D+  ++  L   G+  +
Sbjct: 7   ILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVML--PGKSGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  EICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEG 124

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +            G   +               L   E  +LE  + +    +++ Q+
Sbjct: 125 NRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G       +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 185 MEMA-GHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQF 231


>gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 228

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D  L+++         G  ++  N+ E   +L +  R + + I+  L G  G  V
Sbjct: 3   ILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGLSGKSGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           ++  R     S +P++ ++   S Q  +   ++G DD + KP    E+ ARV A+  R  
Sbjct: 63  IKALRQ--RGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E GPI V    +   + G    L   E R+LE L+ +RG+ ++K  +  A+Y 
Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  I +LR+KL       P+++ R  GY  
Sbjct: 180 PHDEDRDSNVLEVMIGRLRRKLDPAGTLKPIETMRGRGYRF 220


>gi|313680794|ref|YP_004058533.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153509|gb|ADR37360.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 220

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     A     G +++   S E        A      ++  L   G   + 
Sbjct: 6   LVVDDDPNLLRLVEANLRARGYAVDTAASGEAALERLRMAGYACVLLDLML--PGVDGMT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120
           + R  R    VP++ +S     +  ++  D G DD + KP    E+    R A     + 
Sbjct: 64  VIREARGFCDVPIVVMSALGEEERKVEALDLGADDYLVKPFGVAELLARVRAAIRRYGVL 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G    V G    L   E  +L   +  RG+ +   ++  A++G 
Sbjct: 124 GPAEGLRAGVLELDPGGGYALVAGRRVRLTPMEYALLRQFVLARGRTLTHEELLDAVWGR 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              A E++ +  ++ +LR+KL   +    ++S   +GY +D 
Sbjct: 184 G--AGEDHYLHVYVGRLRRKLGPSVA---IESLPGVGYRLDV 220


>gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
 gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
          Length = 223

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQYDLLILDVML--PDIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +    ++          G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYDLKLIHTIRGLGYKI 219


>gi|229098913|ref|ZP_04229848.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229105077|ref|ZP_04235728.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678258|gb|EEL32484.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228684411|gb|EEL38354.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 235

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G        L   +         +  ++  L        
Sbjct: 4   ILIVEDDEKIAGILEEHLERYGYQSFRAIDLRHIKDEFVKVNPHLVLLDINL--PYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IR  S  P+I +S        +   ++G DD + KP H   ++A+V         
Sbjct: 62  YWCRQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +F      E QG+   L + E  +LE LM    + V + ++  
Sbjct: 122 EYASAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
           A++      V++N +  ++ ++RKKL      + + +KR  GY++  +W
Sbjct: 182 ALWDEVAF-VDDNTLTVNVKRVRKKLEELGIKNAIVTKRGYGYALLTEW 229


>gi|254432194|ref|ZP_05045897.1| two-component response regulator [Cyanobium sp. PCC 7001]
 gi|197626647|gb|EDY39206.1| two-component response regulator [Cyanobium sp. PCC 7001]
          Length = 235

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S E  ++ +       +   ++  ++  L       +
Sbjct: 6   LLIVDDDPELRRFLRTELELEGYSCEEASTGQQALQRVRAGGWELLLLDWSL--PDFSGV 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+      ++ ++    +Q  +   D+G DD + KP    E+LARV A  RR  
Sbjct: 64  EICRRLRSTGDTTQVLMVTARDDVQERVAALDAGADDYLTKPFSIEELLARVRARLRRRG 123

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +     +       +     +    G V  L   E  +L+ L+ +  +   +  I 
Sbjct: 124 AEQTQEPALQVLSLADLEMVPARHEVSRAGAVVTLTNTEYELLKLLLEHPKQVQRRADIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++G      ++NV++ +I  LR+KL        + + R +G+ +
Sbjct: 184 KAVWGET-WVGDDNVLDVYIRSLRRKLEPPGSTTLIQTVRGVGFML 228


>gi|319936362|ref|ZP_08010778.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
 gi|319808477|gb|EFW05029.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     A    +G S    +S E         +  V  ++  L   G    
Sbjct: 4   ILLVEDNQELAKLIQAFLCKEGFSYYYASSAEDAFVWLKVHQPQVIVLDIML--PGSDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---NKPIHHREILARVAAIYRR 118
              + +R  S VP+  +S   +    L  F+ G DD +     P      +  +   + +
Sbjct: 62  AFCQSVRQTSDVPIFMMSAKSAKSDKLMGFELGADDYMEKPIDPDILCAKIRAILTRHSK 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K S+    +G IR+   G    ++ ++  L  +E  +L   + N GK + K  +F+ I+
Sbjct: 122 DKQSDQIINSGAIRIDVAGHKVYLKNKLLDLNVKEYALLMLFIENAGKTLHKDYLFNEIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           G+ D   E   +  HI  LR K+         + +   +GY  + 
Sbjct: 182 GM-DSESENQTLTVHIKMLRSKIEKDSRNPQRIQTVWGIGYRYEE 225


>gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F +    +    SA  D + ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTL--PGIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A I R  
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDDEVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
 gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
          Length = 220

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G      + G + +   +      L  +++  +  ++  L    +   
Sbjct: 3   LLIVEDDELLQRGIAMALTNQGYACDCAGTAAEAHSLLHTSQYSMVILDLGL--PDQDGA 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R      P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++          +   +   +Q +   +  +E  IL  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++ +  N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 180 TWNDDLGSNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|310642219|ref|YP_003946977.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309247169|gb|ADO56736.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   V      +   DG  +   ++      +      D+  ++           
Sbjct: 4   LLAVDDEPAVLALLQNILQKDGHVVTVVSTSPQVLTM-QLGAFDLILLDVM--MPNMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR+    P++ ++        +     G DD + KP    E+ AR+ A  RR   
Sbjct: 61  TLCREIRSKVDCPILFLTAKSMENDVMLGLGEGADDYIVKPFGAGELRARINAHLRRENR 120

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                       F+        Q  V P  + E  I ++L  N G+  +K QI+ A++G 
Sbjct: 121 ERRNVFCIGEVHFNLSGKEITVQNVVIPFTKSEYEICKFLALNWGQVFSKEQIYEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   +   +  HI  +R KL  K+   PV++   +GY 
Sbjct: 180 FDGDSDSATIVEHIKNIRAKLG-KVEVSPVETVWGIGYR 217


>gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6]
 gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 4/224 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + D +       G  +   +       L      D+   +  +    G  +
Sbjct: 5   ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   + +        I        +       +              +            
Sbjct: 65  IGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +++     + ++  E+  L  +   +L  L +N  +  +KT ++  ++  
Sbjct: 125 GETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKVW-Q 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
            D   + N +  HI  LR++L          + +   LGY I+ 
Sbjct: 184 EDYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEK 227


>gi|126728083|ref|ZP_01743899.1| DNA-binding response regulator ChvI [Sagittula stellata E-37]
 gi|126711048|gb|EBA10098.1| DNA-binding response regulator ChvI [Sagittula stellata E-37]
          Length = 233

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++  +          +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFTKKMPDMAVFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +R  S++P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRVRQKSKMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +         +G    L   E  +L+ L    G   ++ 
Sbjct: 122 VAGDAVGETEETKLMTRGSLTMDPLRHAVTWKGLDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R+    F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSVDPEFSAIETLYGIGYRYNE 232


>gi|17232242|ref|NP_488790.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133887|dbj|BAB76449.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+    + +       + G      N            +  +  ++  L   GE  L 
Sbjct: 10  LVIETDDSLANQLSFDLQEAGYDAILANDATTGLQYCRDRQPALVVLDRMLA--GESGLS 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R      P++ +    ++   +   ++G DD + KP    + L  +    +    
Sbjct: 68  LCKNLRNTGVRSPVLVLMARDTVDDRVACLEAGADDYILKPYRPEDFLRLIRLYLKPDVD 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +    R     G    L  +E  +L+YLM +  + + + QI   ++G +
Sbjct: 128 TTEQLRFGDLILDLANRRAVYSGRNVELTMKEFELLKYLMEHPREVLTREQILENVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV+E +I  LR K+ ++     + + R +GY +
Sbjct: 187 DFMGESNVIEVYIRYLRLKIEDEGQKRLIQTVRGVGYVL 225


>gi|87125700|ref|ZP_01081544.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86166676|gb|EAQ67939.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 246

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 79/230 (34%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  ++DD   ++        D G  +   + ++  E      R D+  ++      G+  
Sbjct: 11  MIWVVDDDPELRQMVGTYLIDQGYEVRCLSDVKQFEARLDFQRPDLVVLDLM--MPGDDG 68

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILAR 111
           L   R +R A   +P++ ++        +   + G DD + KP   RE        +  R
Sbjct: 69  LTALRRLRDADDDLPVVMLTAKGDGIDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRR 128

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A             + G   +    R     G+   +   E  +L   + +  + +++ 
Sbjct: 129 TAMPAGTPLAEGGSIQFGDNELDLAARTLCKDGQATVITSGEFSLLAAFVQHPHRPLSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G      +   ++  +S++RK +  +      + +    GY  
Sbjct: 189 RLIELARGPGC-DTDTRSMDVQVSRVRKLVEPDPSRPRYIQTVWGYGYVF 237


>gi|188494474|ref|ZP_03001744.1| DNA-binding response regulator CreB [Escherichia coli 53638]
 gi|254037410|ref|ZP_04871487.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
 gi|260858572|ref|YP_003232463.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O26:H11 str. 11368]
 gi|188489673|gb|EDU64776.1| DNA-binding response regulator CreB [Escherichia coli 53638]
 gi|226840516|gb|EEH72518.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
 gi|257757221|dbj|BAI28723.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O26:H11 str. 11368]
 gi|284924577|emb|CBG37716.1| two-component response regulator [Escherichia coli 042]
 gi|309704906|emb|CBJ04259.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323157712|gb|EFZ43817.1| transcriptional regulatory protein creB [Escherichia coli EPECa14]
 gi|323935191|gb|EGB31554.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323960113|gb|EGB55758.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|332346446|gb|AEE59780.1| transcriptional regulatory protein CreB [Escherichia coli UMNK88]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDVMILDVGL--PDISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +    I  F                   R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVW- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +   +  +++HI  LR KLR       P+++ R +GYS+
Sbjct: 185 EDAQDTYDRTIDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|332284350|ref|YP_004416261.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330428303|gb|AEC19637.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEIKTGDYVRQGLIESGFVVDLTRTGLDGHHLALTGSYDLIILDVML--PDVDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A S  P++ ++   S++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +     +      R  + Q     L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 APAFQDQLQVADLVLDIPRRRAQRQNVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDYEPKLIHTVRGMGYMLDV 223


>gi|323693531|ref|ZP_08107735.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum
           WAL-14673]
 gi|323502386|gb|EGB18244.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum
           WAL-14673]
          Length = 228

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +      +   + +     +S      L  +   D+  ++  L     +  +
Sbjct: 6   LIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLG--DMEGFD 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117
           + + +R+     P++ IS       +L     G DD + KP        ++ A +     
Sbjct: 64  VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   ++  + GP    +         E   L  +E  ++   M + G+   K  I+  +
Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEEEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +G    AV++N +  +I++LR K+       + + + R LGY  
Sbjct: 184 WGTS-VAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGYRF 226


>gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
 gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D +       G  +   +       +      D+   +           
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIM--MPRMDGY 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +       P + I+   S Q  +     G DD + KP   RE++ RV  I RRL 
Sbjct: 63  DLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLH 122

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +R+     + +V      L  +   +L  L +N  +  +KT ++  ++
Sbjct: 123 RGGETEVVSLGDLRMNHGSHEVQVGDVGLDLTVKSFELLWLLASNPERVFSKTDLYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
              D   + N +  HI  LR++L      +   + +   LGY I+ 
Sbjct: 183 -QEDYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|301056578|ref|YP_003794789.1| putative two-component response regulator [Bacillus anthracis CI]
 gi|300378747|gb|ADK07651.1| putative two-component response regulator [Bacillus cereus biovar
           anthracis str. CI]
          Length = 223

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++      G  G  +    + E       +    +  ++  L        
Sbjct: 3   ILLVEDEPTIRETVADELGKWGFEVWASTNFEHILNDFLAQSPQLVLLDINL--PYFDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S+VP+I +S   +    +   + G DD V KP +   ++A++ A+ RR   
Sbjct: 61  YWCRKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRRTYS 120

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                                +     ++  L + E +IL+ LM N G  V++  I   +
Sbjct: 121 YTQTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 181 W-ENESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 267

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGL--PRMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   +  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLEK 220


>gi|254695542|ref|ZP_05157370.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 3
           str. Tulya]
 gi|261215933|ref|ZP_05930214.1| two-component system response regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917540|gb|EEX84401.1| two-component system response regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 238

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+ +    + +    + S    D+  ++  L   G+  +
Sbjct: 7   ILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVML--PGKSGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  EICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEG 124

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +            G   +               L   E  +LE  + +    +++ Q+
Sbjct: 125 NRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G       +  V+  IS+LRKKL +       + + R  GY  
Sbjct: 185 MEMA-GHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQF 231


>gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++           G S++  ++ E      ++    +  ++  L       L
Sbjct: 3   ILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISL--PKMDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S++P++ ++   +L   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +R   +        +   L  RE  + E L++ +G+ V K Q+   ++G
Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D     N +E ++ + RKKL        + + R +GY ++ 
Sbjct: 181 WGD-DGGSNAIEVYVHRTRKKLEPYNIN--IRTVRGMGYLLEK 220


>gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ ++  L   G   L
Sbjct: 19  LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGL--PGISGL 76

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL  R+       P++ ++   + Q  ++   +G DD + KP    E+ AR+ A + R  
Sbjct: 77  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY  
Sbjct: 196 PGDEERDPNVIEVLVGRLRRKLEGAHGFKPIDTVRGLGYLF 236


>gi|77462226|ref|YP_351730.1| two-component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|332560107|ref|ZP_08414429.1| two-component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77386644|gb|ABA77829.1| two-component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|332277819|gb|EGJ23134.1| two-component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 233

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++          +
Sbjct: 4   IALVDDDRNILTSVAMTLEAEGFEVETYNDGQSALEAFNKRMPDMAVLDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           +L + +R  S +P+I ++        +     G DD V KP   R               
Sbjct: 62  DLLQRLRQKSAMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +A      +  +   E G +R+         +G    L   E  +L+ L    G   ++ 
Sbjct: 122 IAGGEADAQEESRILERGNLRMDPLRHAVSWKGRDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           Q+    Y      V++  ++SHI +LRKK+R     F  +++   +GY  + 
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRAADSDFAAIETLYGIGYRYNE 232


>gi|302380543|ref|ZP_07269008.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233958|ref|ZP_07320607.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311486|gb|EFK93502.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494883|gb|EFL54640.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 222

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I    ++G    GF      +    S+  D+  ++  L G  G +
Sbjct: 1   MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLE 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117
           +L+  R       +P++ ++   +    +   DSG DD + KP    E+LARV A     
Sbjct: 61  ILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRS 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  + ++     I +  D R   V GE   L  +E  +L YL++N GK + +  I + I
Sbjct: 121 SLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G FD   E   V+ HI+ LR+KL+N      + + R LGY 
Sbjct: 181 WG-FDFEGESRTVDVHIATLRQKLKNASS--IIKTIRNLGYK 219


>gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 224

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G  ++   S    +    +  E    +   L       L
Sbjct: 3   ILIAEDDQVLADGLLRTLRASGAVVDHVASGSEADAALMTNNE-FDLLILDLGLPKMHGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +R+  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A   R +
Sbjct: 62  EVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRGM 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
             +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 122 GGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E +I +LRKK+    G   + + R LGY ++ 
Sbjct: 182 WG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLEK 221


>gi|254523237|ref|ZP_05135292.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
 gi|219720828|gb|EED39353.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
          Length = 227

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + I+D A+     +A     G+ ++            +S   DV  ++  L   G   L 
Sbjct: 5   LTIEDDAITAQEIVAELSSHGLQVDWVADGREGLVRAASGDYDVITLDRML--PGLDGLA 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           +   +R      P++ +S    +   +    +G DD + KP         +  +    ++
Sbjct: 63  IVTTLRRIGVATPVLMLSALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRRQQ 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G +++    R     G    L   E ++LEYLM N G+ + +  +F  ++
Sbjct: 123 PASNETVLRVGDLQLDLLARTAHRGGRSLSLLPTEFKLLEYLMRNAGQVLTRMMLFEEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +      N+++ HI +LR+KL        + + R  GY +
Sbjct: 183 G-YHFDPGTNLIDVHIGRLRRKLDQADAPSLIRTVRGSGYVL 223


>gi|188587839|ref|YP_001922138.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
 gi|188498120|gb|ACD51256.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
          Length = 218

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G   +          L      D+  ++  L   G    E
Sbjct: 6   LIIEDDEAISNLIKINLSMVGYQSKQLFDGLEAFNLLKEEPFDLILMDIML--PGMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + I+    +P+I ++    L   +    SG +D + KP    E+LAR+  + RR   +
Sbjct: 64  LMKKIKDL-NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKN 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N  E   ++++ + R  +   E   L  +E  ++  L+ N+   +++  +   I+G ++
Sbjct: 123 SNCIEFENLKIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E   +++HI KLRKKL        + +   +GY ++ 
Sbjct: 182 YMGETRTIDNHIQKLRKKLDIADN---IKTVYKIGYRLEE 218


>gi|332886069|gb|EGK06313.1| hypothetical protein HMPREF9456_00187 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E   S E           D S I   ++  G    
Sbjct: 5   ILIVDDEKDICEILEFNLSNEGFDVELAYSAEEALKKL---NPDFSLILLDVMMGGMSGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114
           ++   +R   + +P++ ++   +    L  F  G DD ++KP   +E++AR+        
Sbjct: 62  KMAEKLRKEGNNIPIVFLTAKDTENDMLTGFSVGGDDYISKPFSIKEVIARIKAVVKRLE 121

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +  K S        I +  D ++  V GE   L + E  IL  L  N  K  ++  I 
Sbjct: 122 VKKNTKESTTELTFAGIVINMDKKELTVDGEKVALTKTEFEILALLATNVDKVFSREDII 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++      + E  V+ HI++LRKK+        + ++   GY  +
Sbjct: 182 QTVWRETPY-ITERTVDVHIARLRKKMGEYSS--LIANRSGYGYRFN 225


>gi|209809014|ref|YP_002264552.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208010576|emb|CAQ80951.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++         +  ++ + D+  ++  L        
Sbjct: 3   LLIIEDETKAGDYLKKGLTESGYTVDLSRDGVDGLYNATTYQYDLIILDVML--PKLNGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   +  P+I ++    +   +  F+ G +D + KP    E+ AR+    R   
Sbjct: 61  QILQTLRNCENSTPIIMLTAKDQVDDRVKGFELGANDYLIKPFAFAELKARIENALRSQT 120

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +++  +        +++           +   L  +E  +LE  M  +G+ +++T I S
Sbjct: 121 ANSHTQKVNELVLCDLQLDLLKHTATRNHDNITLTAKEFSLLELFMRKQGEVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I+ + +   + NV++  + +LR K+        + + R +GY +D 
Sbjct: 181 LIWDM-NFDSDTNVIDVAVKRLRAKIDKPYDTPLIHTVRGMGYKMDE 226


>gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 96/223 (43%), Gaps = 3/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D   + D  +    + G ++    +     ++ +    D+  ++  L    G ++
Sbjct: 3   ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L   R       +P+I ++    ++  +   + G DD + KP    E+LAR+   + R  
Sbjct: 63  LTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRRSP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R     G+   L  +E  +L  L   + + ++++ I S ++ 
Sbjct: 123 VRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NV+++ + +LR K+ +      + ++R +GY  + 
Sbjct: 183 I-NFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCEV 224


>gi|22125688|ref|NP_669111.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis KIM 10]
 gi|108807885|ref|YP_651801.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Antiqua]
 gi|108812159|ref|YP_647926.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Nepal516]
 gi|149366402|ref|ZP_01888436.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165925538|ref|ZP_02221370.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938457|ref|ZP_02227014.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008412|ref|ZP_02229310.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210640|ref|ZP_02236675.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401723|ref|ZP_02307214.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421718|ref|ZP_02313471.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426336|ref|ZP_02318089.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469318|ref|ZP_02334022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis FV-1]
 gi|218928770|ref|YP_002346645.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis CO92]
 gi|229841621|ref|ZP_04461779.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843738|ref|ZP_04463881.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902480|ref|ZP_04517599.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|270490340|ref|ZP_06207414.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504168|ref|YP_003568230.1| response regulator protein [Yersinia pestis Z176003]
 gi|21958603|gb|AAM85362.1|AE013782_3 transcriptional regulatory protein [Yersinia pestis KIM 10]
 gi|1621018|emb|CAA70004.1| PhoP protein [Yersinia pestis]
 gi|108775807|gb|ABG18326.1| response regulator protein [Yersinia pestis Nepal516]
 gi|108779798|gb|ABG13856.1| response regulator protein [Yersinia pestis Antiqua]
 gi|115347381|emb|CAL20279.1| response regulator protein [Yersinia pestis CO92]
 gi|149290776|gb|EDM40851.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165913572|gb|EDR32192.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922647|gb|EDR39798.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992794|gb|EDR45095.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207820|gb|EDR52300.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960203|gb|EDR56224.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048828|gb|EDR60236.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054691|gb|EDR64495.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680526|gb|EEO76623.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|229689346|gb|EEO81409.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694084|gb|EEO84132.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362285|gb|ACY59006.1| response regulator protein [Yersinia pestis D106004]
 gi|262366219|gb|ACY62776.1| response regulator protein [Yersinia pestis D182038]
 gi|270338844|gb|EFA49621.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294354627|gb|ADE64968.1| response regulator protein [Yersinia pestis Z176003]
 gi|320014777|gb|ADV98348.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           L R  R+H +  P++ ++   S Q  +   ++G DD V KP H  E++AR+ A + R + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRSQGYRFDVN 223


>gi|237799359|ref|ZP_04587820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805509|ref|ZP_04592213.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806273|ref|ZP_04592977.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022215|gb|EGI02272.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026616|gb|EGI06671.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027387|gb|EGI07442.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVML--PGIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I  R + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKIDLPYPVKLIHTVRGIGYVCEV 221


>gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 70/220 (31%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++           
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKNFDIILLDVM--MPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    VP+I ++        +     G DD + KP   + +         R   
Sbjct: 62  DTCYQIRQLCNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVL-IARIEAVLRRTK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E  PL   E  +L   + N  +  ++  +   I+G +
Sbjct: 121 KDGFITFNGIEWDKTKHTVTVYNEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYS 219
              +E   V+SHI  +R KLR K       +++   +GY 
Sbjct: 180 QTDIEYRTVDSHIRNIRDKLRKKDFPVEKYLETIYKVGYK 219


>gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++I+D             + G         E           DV  ++  +  K G +V
Sbjct: 3   ILIIEDDLEAAAAMSHGLTEAGYQCVHAPDGEAGLTAAGKGGFDVMIVDRMMPKKNGVEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118
           +E  R        P++ +S    +   +    +G DD + KP    E++ARV   +  R 
Sbjct: 63  VETLRR--EGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALSRRRE 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R    QG+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222


>gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +      L   +G S++  +      +L S    D++ I+  L        
Sbjct: 3   ILIVEDDSRLLTQLDTLLQTNGYSVDLADDGAKALFLLSEHPYDLAIIDIGL--PVMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R +S   P++ ++     Q  ++  D+G DD + KP  + E+LARV A+ RR  
Sbjct: 61  EVIQKARKNSVTCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N          +       V G+   L   E ++ EYL+ N  K V+KT++   IY 
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL  +   +P+++ R  GY I
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPEGKINPIETMRGRGYRI 220


>gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
 gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGL--PKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A   R  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y + N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++RKK+      + + + R LGY ++ N
Sbjct: 180 KQDFDRDSNTIEVFIGRIRKKI----APNIIKTVRGLGYQLNAN 219


>gi|258654345|ref|YP_003203501.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557570|gb|ACV80512.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +             +++ +   L       LE
Sbjct: 5   LLVEDDPAIAQPLTRALQREGYQVRPAPTGGAAVAAFGENGSEITLVILDLGLPDLDGLE 64

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA  +  P++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 65  VCRRIRAAGRDLPVLMLTARTDEADFVVGLDAGADDYVAKPFRMAELLARVRALLRRRVP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        +   +  R  EV G    L  +E  +L  +M+  G+ V + +I + ++   
Sbjct: 125 ALMEVGGVRVE--TGSRKVEVDGVEVTLSNKEFELLRVMMSRAGQVVTREEILAEVWNDP 182

Query: 182 DEAVEENVVESHISKLRKKLRNK---LGFDPVDSKRFLGYSID 221
                   ++ H+S LR+K+       G   + + R +G+  +
Sbjct: 183 -TMKTSKTLDMHMSWLRRKIARPDGSGGDQRISTVRGVGFRFE 224


>gi|215445178|ref|ZP_03431930.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T85]
 gi|289757111|ref|ZP_06516489.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294995216|ref|ZP_06800907.1| transcriptional regulator kdpE [Mycobacterium tuberculosis 210]
 gi|289712675|gb|EFD76687.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|326904745|gb|EGE51678.1| transcriptional regulator kdpE [Mycobacterium tuberculosis W-148]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G  +   ++        +    DV  ++  L       ++
Sbjct: 5   LVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGL--PDMSSID 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118
           +   +R     P+I +S        +   D+G DD V KP    E      A V      
Sbjct: 63  VLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     ET    V   G+     G    L   E  +LE L  NRGK V + ++   ++
Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G    A E + +  ++++LR+KL +       + ++  +GY  +
Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFE 225


>gi|187777156|ref|ZP_02993629.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC
           15579]
 gi|187774084|gb|EDU37886.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC
           15579]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     ++F + G       S         + + D+  ++  +   G    
Sbjct: 7   ILVVEDDNDINKLLCSIFENKGYKSRAAFSGTEALMCVENEKWDMILLDLMI--PGLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR   
Sbjct: 65  EVILKIRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLE 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +N      I + ++ ++ +V   V  L  RE  +LE L+ N  K  +K  IF
Sbjct: 125 FSTDEENRSNILSYKEITLNTESKEVKVGQVVVTLTAREFAVLELLLTNPNKVYSKANIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            +I+G  +   E+N V  H+S+LR KL   N  G D +++   +GY +
Sbjct: 185 ESIWGE-EFLGEDNTVNVHVSRLRNKLSRANNNGEDYIETVWAMGYRL 231


>gi|163867922|ref|YP_001609126.1| two-component response regulator [Bartonella tribocorum CIP 105476]
 gi|161017573|emb|CAK01131.1| two-component response regulator [Bartonella tribocorum CIP 105476]
          Length = 228

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S++     +    L ++   DV  ++  L+ +    L
Sbjct: 3   ILVIEDDRETGRYLEKAFLEVGHSIDVAYDGDTGYALATTENYDVMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+     V    + 
Sbjct: 61  SIITELRAKGNETPVLILSALGQVNDRVTGLRAGADDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +        + +       +       L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVSNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E      +    DV  ++           
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVM--MPKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + +RA+     ++ ++    +   +   D G DD + KP   RE++AR+ A + R+ 
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V    +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E N+++  I  +RKK+        + +KR LGY +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDIGDSKPIIHTKRGLGYVL 220


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 91/234 (38%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++   A     G  +      +     Q+ A  D++ ++  L         
Sbjct: 12  LVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVML--PDMDGFT 69

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118
           + R +R      P++ ++    ++  +     G DD + KP         +  V      
Sbjct: 70  ILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHP 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +  +  D    G++  L   E ++L YL+ N  + V+K QI   ++
Sbjct: 130 SDADAAVLTYGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKL------------RNKLGFDPVDSKRFLGYSI 220
             ++   E ++VES+IS LR+K+              K     + +KR +GY +
Sbjct: 190 D-YNWNGEVSIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGYVL 242


>gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +      G +++   +      L ++    V+ I+  L   G   L
Sbjct: 3   ILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVML--PGLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
           ++   +R    + P+I +S   S++  +   ++G DD ++KP    E+    +       
Sbjct: 61  QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R+         L  RE  +LEY M N GK ++KT I   ++
Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+V+  + +LR K+        + + R +GY +
Sbjct: 181 D-YHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 221


>gi|229065487|ref|ZP_04200735.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228715805|gb|EEL67577.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 275

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G         E         + D+  ++  L        
Sbjct: 45  IMIVEDDIKIAELLGTHIEKYGYQSVMIEDFENVLDTFQKIKPDLVLLDVNL--PNFDGY 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115
              R IRA S  P++ +S        +   ++G DD + KP ++  +++++         
Sbjct: 103 YWCRQIRAISTCPIVFLSARSGEMDQVMALENGGDDYITKPFYYEVVMSKIRSQLRRAYG 162

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               KV     E   + +F +  + +++ +   L ++E  +LE L+      V +  I  
Sbjct: 163 EYAPKVKERIVEQSGLFLFPERMELQLEDKTIILTKKETTLLEILITKSPLLVKREVILE 222

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++      ++EN +  +I ++R+KL++    + +++ R  GY +
Sbjct: 223 QLWDS--SYIDENTLSVNIGRIRRKLQDLGIENALETVRGAGYRL 265


>gi|170692767|ref|ZP_02883929.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170142423|gb|EDT10589.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E   +L +    DV  ++  L        
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTYLATEFDYDVIVLDVML--PKRDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A   R   
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|75908143|ref|YP_322439.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701868|gb|ABA21544.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+    + +       + G      +            +  +  ++  L   GE  L 
Sbjct: 10  LVIETDDSLANQLSFDLQEAGYDAILASDATTGLQYCRDRQPALVVLDRMLA--GESGLS 67

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R      P++ +    ++   +   ++G DD + KP    + L  +    +    
Sbjct: 68  LCKNLRNTGVRSPVLVLMARDTVDDRVACLEAGADDYILKPYRPEDFLRLIRLYLKPDVD 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +    R     G    L  +E  +L+YLM +  + + + QI   ++G +
Sbjct: 128 TTEQLRFGDLILDLANRRAVYSGRNVELTMKEFELLKYLMEHPREVLTREQILENVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV+E +I  LR K+ ++     + + R +GY +
Sbjct: 187 DFMGESNVIEVYIRYLRLKIEDEGQKRLIQTVRGVGYVL 225


>gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I    ++G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGL--PKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A   R  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+        + + R LGY ++
Sbjct: 180 KQDFDRDSNTIEVFIGRIRKKI----APKIIKTVRGLGYQLN 217


>gi|146337856|ref|YP_001202904.1| two-component transcriptional regulatory protein ChvI
           [Bradyrhizobium sp. ORS278]
 gi|148258552|ref|YP_001243137.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146190662|emb|CAL74664.1| two-component transcriptional regulatory protein ChvI
           [Bradyrhizobium sp. ORS278]
 gi|146410725|gb|ABQ39231.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +  +           +++ D++ ++          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSQPDLAILDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111
           E  R +R  S +P+I ++        L     G DD + KP   R               
Sbjct: 62  ETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSQP 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +      + G +R+  +      + E   L   E  IL+ L    G   ++ 
Sbjct: 122 KDPTALPKENDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALAQRPGVVKSRN 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 182 ALMDAAYD-DQVYVDDRTIDSHIKRLRKKFKMVDEEFEMIETLYGVGYRF 230


>gi|329938522|ref|ZP_08287947.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302495|gb|EGG46386.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       S E      ++ R D+  ++  L   G    
Sbjct: 6   LLVVDDDPPIADLVATVARYEGWEAVTAYSGEEALTRAAAFRPDIVVLDLML--PGVDGF 63

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+  A   VP++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 64  GVLDRLRGAGMSVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSL 123

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +  D R+      +  L   E  +L  L+      + K QI   +
Sbjct: 124 GPGGPRSVLRVADLTMDEDTREVRRGDRLLALTPTEYDVLRCLLRKSPAVLTKAQILDDV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
           +  +      NVVE  +S+LR+KL   +      + + R +GY 
Sbjct: 184 W-QYGFGGRSNVVELVVSRLRRKLEATDGGAVPLIHTVRGVGYV 226


>gi|309805459|ref|ZP_07699506.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808223|ref|ZP_07702132.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 01V1-a]
 gi|309810118|ref|ZP_07703964.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312872201|ref|ZP_07732274.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|325911586|ref|ZP_08173994.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 143-D]
 gi|308165277|gb|EFO67513.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 09V1-c]
 gi|308168511|gb|EFO70620.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169617|gb|EFO71664.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311092285|gb|EFQ50656.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|325476572|gb|EGC79730.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 143-D]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++                       ++ I   ++      L+
Sbjct: 10  LVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFR-MDPSITCIILDIMMPEMSGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +R  S+VP++ +S        +    +G DD V KP +  E++AR+ ++ RR + +
Sbjct: 69  LIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSEKN 128

Query: 123 NNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   I V     + +             L   E  IL  L ++ G+  +  +IF  
Sbjct: 129 IVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSANEIFER 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +  V    V  H+S LR K++    G + V +   +GY I+
Sbjct: 189 VW-KQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGYKIE 233


>gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597]
 gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597]
          Length = 231

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D +       G  +   +       +      D+   +           
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIM--MPRMDGY 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +       P + I+   S Q  +     G DD + KP   RE++ RV  I RRL 
Sbjct: 63  DLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLH 122

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +R+     + +V      L  +   +L  L +N  +  +KT ++  ++
Sbjct: 123 RGGETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
              D   + N +  HI  LR++L      +   + +   LGY I+ 
Sbjct: 183 -QEDYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|289549074|ref|YP_003474062.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289182691|gb|ADC89935.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 12/223 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   + +  +    ++G   EGF                +  ++  L         L
Sbjct: 7   VVEDDIDLLETVVHYLEEEGFQAEGFRDGSSFIRRIRDDVPHLVLLDVML--PDHDGFSL 64

Query: 64  PRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118
            R +    A   VP++ I+        L  F+ G DD + KP   RE+    R       
Sbjct: 65  ARYLKTNPATKSVPIVFITVKGMEDDRLKGFELGADDYITKPFSLRELLARIRAVLRRSG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    + G +++ +   +     E   L   E +ILE L+ N G+ V++  +  A+ 
Sbjct: 125 HLKSEGIYQLGELQIDTQKMEVRRGKEKIYLTPTEFKILECLLENYGRPVSREYLIEAVL 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 V +  ++ H+  LR+KL  +     + + R +GY I+
Sbjct: 185 KK---DVYDRTIDVHVKNLREKLGKEGQA--IRTVRGIGYKIE 222


>gi|284066971|gb|ADB77766.1| AdeR [Acinetobacter genomosp. 13]
          Length = 247

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N       I    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +       + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGILQMFINVRGVGYRLD 238


>gi|260550399|ref|ZP_05824610.1| two-component system response regulator [Acinetobacter sp. RUH2624]
 gi|260406505|gb|EEW99986.1| two-component system response regulator [Acinetobacter sp. RUH2624]
          Length = 247

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKL--PELNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            +N  +    I    +         +          L   E +I+ +++    K   + +
Sbjct: 132 FANKASNKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +       + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGILQMFINVRGVGYRLD 238


>gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733]
 gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733]
          Length = 218

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +     +G ++    + +    +      D+  ++  L        
Sbjct: 3   ILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIML--PEIDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +  +  +P+I ++    L   +    SG +D + KP    E+LARV  + RR   
Sbjct: 61  EVFAYMWEY-DLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNGK 119

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++    +   I +    R    + +   L  +E  +L YL+ N+G  + + +I+  I+G
Sbjct: 120 NDSNKLLKWQYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKGIILPREKIYQKIWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E      ++ HI ++R KL+  LG D   +   +GY ++
Sbjct: 180 R-EEEPNSRTLDLHIQRIRNKLQ--LGQDL-RTIYGVGYLLE 217


>gi|227823903|ref|YP_002827876.1| two component signal transduction response regulator protein
           [Sinorhizobium fredii NGR234]
 gi|251757250|sp|P50351|CHVI_RHISN RecName: Full=Transcriptional regulatory protein ChvI
 gi|227342905|gb|ACP27123.1| two component signal transduction response regulator protein
           [Sinorhizobium fredii NGR234]
          Length = 241

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +    ++  +          +
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPHLAIFDI--KMPRMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAPA 121

Query: 122 SNNRAETGPIR-----------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  A                       +  +      + E   L   E  IL  L    
Sbjct: 122 RDAAAAGVAGAAKSADAPSRSLERGQLVMDQERHTCTWKSEPVTLTVTEFLILHSLAQRP 181

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G   ++  +  A Y      V++  ++SHI +LRKK +   + FD +++   +GY  
Sbjct: 182 GVVKSRDALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKMVDVDFDMIETLYGVGYRF 237


>gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB
 gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB
 gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTL--PGMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +          + G     + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|238787325|ref|ZP_04631124.1| Transcriptional regulatory protein creB [Yersinia frederiksenii
           ATCC 33641]
 gi|238724587|gb|EEQ16228.1| Transcriptional regulatory protein creB [Yersinia frederiksenii
           ATCC 33641]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGL--PDING 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R + A   ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 62  FDLCRRLLAQVPELPVVFLTARSEELDRIIGLEIGADDYIAKPFSPREVSARVRTVLRRL 121

Query: 120 KVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S          + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSQTVVTSTALHQFGHFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPERVFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR     + P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTACDEESPIRTHRGLGYSL 228


>gi|325262963|ref|ZP_08129699.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032057|gb|EGB93336.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 215

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G      +              D+  ++  L        
Sbjct: 4   ILIVEDDKSINELIRRTVRMTGHRGLPVHDGREALKAVEQKVPDLILLDMNL--PDISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +      Q+P+I ++    +   +   + G DD + KP    E++AR+ A  RR   
Sbjct: 62  ELLKQ---WKQIPVICVTARGEIGDRVRGLNGGADDYIVKPFAVEELVARIQAAMRRQNK 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + V +       +G    L  RE  +L+ L+ N+   +++ ++    +G+ 
Sbjct: 119 EQTLYQLGSVEVDTSQAVVRKEGIPVELTTREYELLKVLLENKNIALSRDRLLDLAWGM- 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++  V+ HI +LR+KL      + + +    GY ++
Sbjct: 178 DYCGDDRTVDVHIRRLRQKL---GLEEYIRTIFKYGYRLE 214


>gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G SL+ F           SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFSLDWFTDGLQGMTALESAPYDAVILDLSL--PGIDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A I R   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSH----FIRTVHGVGYTL 216


>gi|295106471|emb|CBL04014.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 249

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +      L   +G +  G    E    L +  + D+  ++  L   G    +
Sbjct: 19  MLIDDEDNLHAAIEKLLVQNGYAFCGAEDAERGLALLAGEKPDLLLLDVML--PGMNGFD 76

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R IR   +  P+I +S    +      F +G DD V KP +  E+L R+ A  RR K 
Sbjct: 77  LCRRIREEGRRIPIIFLSAKCDIVDKSIGFKAGGDDYVTKPFNATELLLRIEANIRRHKD 136

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   A               V  D     ++G    L  +E  I+ +L AN GK   ++Q
Sbjct: 137 TIEFARCCNREGAARIGELEVRFDEYQVLLRGRPVALTTKEFEIVAFLAANPGKVFTRSQ 196

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I   I+G  +  V+ N +   + K+R+K+         + + + +GY +
Sbjct: 197 IQEYIWGEGESDVKTNSITVFVRKIREKIEENPSEPKYLLTVQRVGYKM 245


>gi|170748891|ref|YP_001755151.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655413|gb|ACB24468.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 251

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   +         + + + AR D+  ++  L   GE  L
Sbjct: 21  ILVVEDDREISALIARYLRGNDCRVTLAGDGTDMDRVLAEARIDLIVLDLML--PGEDGL 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  SQ+P++ ++        +   + G DD + KP + RE+LAR+ AI RR+  
Sbjct: 79  SLCKRLRGTSQIPILILTAKSEDVDRILGLELGADDYLAKPFNPRELLARIRAILRRVAA 138

Query: 122 SNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A+      FS         +    +G    +   E  +L  L    G+ +++ Q+ 
Sbjct: 139 EAPDADERRRLHFSGWTLDVSLRQVLSPEGARISITGAEFDLLHALCLRPGRVLSRDQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               G      E   ++  IS++R+K+       + + + R  GY  
Sbjct: 199 DLTQGRAAGPFE-RSIDVLISRIRQKIERDTRNPEFIRTIRSGGYLF 244


>gi|114326850|ref|YP_744007.1| two-component response regulator kdpE [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315024|gb|ABI61084.1| two-component response regulator kdpE [Granulibacter bethesdensis
           CGDNIH1]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++       G     +    S        +  + D+  ++  L       LE
Sbjct: 7   LIVDDEPAIRRLLRTTLGTQSWRITEAASGAGAMQALAEQKPDLVLLDLGL--PDMDGLE 64

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
           + + IR     +P++ +S   + +  +  F+ G DD V KP    E++AR+        +
Sbjct: 65  VLQHIRKTAPTLPVVILSARDNERGKVAAFEMGADDYVTKPFGMAELVARLRTALRHSLQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +     +G + V    R     G+   L  RE  IL  L+ + GK +    I S ++
Sbjct: 125 TEGTLPVFVSGDLSVDLVRRHVFKGGDEIKLSPREWDILRMLVQHAGKVLTHQHIMSKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      +   +  +I ++R+KL +       + ++  +GY +
Sbjct: 185 GAQ---GDVQQLRVYIRQIRQKLESNPEQPRYIVTETGIGYRL 224


>gi|46200280|ref|YP_005947.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46197908|gb|AAS82320.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + V +        +G ++                  DV  ++  L     + LE
Sbjct: 5   LLVEDDSQVGELVRRFLEREGFAVAWVRFGREALKRVGKEGADVVVLDRGL--PDMEGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+   +  + +    + + +         D           L        R    
Sbjct: 63  VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R   GP+ V  +GR   ++GE   L   E  +L       G+   + ++   ++G  +
Sbjct: 123 EGRRRFGPLEVDLEGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWG-PE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               E VV++++  LRKKLR+       +++   LGY  
Sbjct: 182 FEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGYRF 220


>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 266

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D+   +           L      D   ++  L   G   L
Sbjct: 26  ILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLML--PGVDGL 83

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P+I  S   S    +   + G DD + KP    E++ARV A+ RR++
Sbjct: 84  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVE 143

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                              +    R+  V G+   L  RE  +L Y   +  K  ++  +
Sbjct: 144 AMARDVRADAGSLELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDL 203

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 204 LNAVWG-YQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGYRF 250


>gi|325123266|gb|ADY82789.1| two-component system, OmpR family, response regulator
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 13/222 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +++ 
Sbjct: 2   IEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGMQVL 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V   
Sbjct: 60  KQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGVEAQ 119

Query: 125 RAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            A    +          +      +G+   L  RE  IL  LM++  K  +K  +   +Y
Sbjct: 120 LANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILVPLMSHPNKIFSKANLEDKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 180 D-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 216


>gi|269216812|ref|ZP_06160666.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC
           700122]
 gi|269129619|gb|EEZ60703.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC
           700122]
          Length = 244

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D    +   DG +++  N       L  S R D+   +      G    
Sbjct: 28  ILVVDDDAAITDLLSRVLARDGHAVDAANDPVSVLGLALS-RYDLILCDVM--MPGMDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR     P++ ++   + +  +     G DD + KP    E+ A+V A  RR + 
Sbjct: 85  ELVGRIRHLVDAPILFLTAKVAEEDAVFGLGLGADDYIRKPFGIVELRAKVGAHVRREER 144

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +RV  D R+    G   PL   E  + E L  +RG+ +++ QI    +G 
Sbjct: 145 VRTHMLALGDVRVDLDARELSAHGSPVPLTPTEYAVCELLAMHRGQVLSREQIRERAFGW 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +A ++  +  H+S  R KLR     DP+++ R +GY 
Sbjct: 205 ASDAGDD-AISMHVSNARAKLRRA-NVDPIETVRGMGYK 241


>gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  ++     E    L +    DV  ++  L    +   
Sbjct: 7   ILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLML--PKKSGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+    RVA   +  
Sbjct: 65  ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V         I++    +   ++ E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+        + + R  GY  
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKIDVDN--KYIHTIRGFGYMF 222


>gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
 gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L+DD   + D         G ++   +       L  +   D+   +  +    G   
Sbjct: 5   ILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMDGYDF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   + +      P + I+   S Q  +     G DD + KP   RE++ RV  I+RR+ 
Sbjct: 65  ISEVQYL--SPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIFRRIY 122

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N  +     +++  +  +  V   +  L  +   +L  L  N  +  +KT+++  ++
Sbjct: 123 RGGNPTQVQLGNLKLNHETYEVYVDNHLLNLTVKAFELLWLLCKNPERVFSKTELYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
              +   + N +  HI  LR++L          + +   LGY I+ 
Sbjct: 183 -QEEFIDDTNTLNVHIHALRQELSKHSSLHTPTIKTVWGLGYKIEK 227


>gi|253688253|ref|YP_003017443.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754831|gb|ACT12907.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R H    P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  +  P  +    R+  + G    L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S++     E        A  D+  ++           E
Sbjct: 4   LVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIM--MPKLNGYE 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           +  ++ R  +  P++ ++   +++  +   D G DD + KP H  E++AR+   I R   
Sbjct: 62  VLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R  +   +   L  +E  ILEY+M N+G  +++ ++   I+  
Sbjct: 122 SVSNELRVADLVMDCATRIVKRGDKEIDLSAKEFAILEYMMQNQGVVLSREKLEEHIW-N 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ +I  LR K+        + + R +GY +
Sbjct: 181 YDYQGASNMIDVYIRYLRIKMDKDFEPKLIHTIRGVGYVL 220


>gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGL--PEMDGV 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            +  +   A   +P++ ++        +   D+G DD V KP H  E+LAR+ A I R  
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+        V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIICGPVRLDIKSSKATVNGTALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 228

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++          G ++    + +    L  S   D+  ++  L       L+
Sbjct: 6   LLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIML--PDINGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  + +P+I ++ +      +  F+ G DD ++KP + RE++AR+ A+ RR+   
Sbjct: 64  VLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAWD 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPR-----RERRILEYLMANRGKRVAKTQIFSAI 177
                           +P+ +              E  +L+ L+A+ G  V KT +    
Sbjct: 124 QKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQWA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            G   E  +   ++ HIS LRKKL N+     +++ R LGY
Sbjct: 184 LGRRLETYD-RTLDMHISNLRKKLGNE-EPPRIETVRGLGY 222


>gi|84394086|ref|ZP_00992821.1| putative two-component response regulator [Vibrio splendidus 12B01]
 gi|84375277|gb|EAP92189.1| putative two-component response regulator [Vibrio splendidus 12B01]
          Length = 243

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G ++E  N++E  + L    + D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGL--PDGDGL 69

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------A 110
           +  R+IR      P++ ++   +    +   ++GVDD + KP    E            +
Sbjct: 70  DFCRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLS 129

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            V ++ +    + +    G + +  +     +     PL   E  +L +L    G+  +K
Sbjct: 130 HVESVTQEAMTTESIMNFGGLIIQPERHQVSLNNRDVPLTATEFTLLHFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++         + V S +++LR KL       D + +   +GY  +
Sbjct: 190 DELLDHVWNTHHS-GYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFE 240


>gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E    ++   + ++  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKME-LTQYNLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +A + +P+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR  
Sbjct: 65  ANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTS 124

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +     ++          +   + G    L ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 PTQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDILA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 KVW-QEEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFE 227


>gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile 630]
 gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-66c26]
 gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CIP 107932]
 gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-63q42]
 gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-76w55]
 gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-97b34]
 gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-37x79]
 gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-32g58]
 gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +      +    L S    D+  ++           
Sbjct: 4   ILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIEL-SKQEPDLIILDIM--MPKMNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   S    +     G DD V KP   RE++AR+ A  RR K 
Sbjct: 61  EVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S    E         G+              +   L + E  I+E L  + G+  ++ QI
Sbjct: 121 SQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +  ++G  D   + + V   + K+R K        + + +   +GY  + 
Sbjct: 181 YEKVWGC-DSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229


>gi|25026789|ref|NP_736843.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259508073|ref|ZP_05750973.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492068|dbj|BAC17043.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259164296|gb|EEW48850.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 224

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++ +D   + D        +G   E   S         S   D+  ++  L    G  V
Sbjct: 6   ILIAEDDDGIADFIRRGLVQEGFECEVAVSGAAAFARAHSGDFDLMILDLGLPHMDGADV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R+++    +P+I ++   +++  +   + G DD + KP    E+LARV       +
Sbjct: 66  LEQLRVLKV--SLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVKLRLASRQ 123

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  T  ++          +   V  +   L RRE  +LE LM + G+ +++ Q+ +
Sbjct: 124 PVERTTNTHLLKHGTLELDLRTQKVFVADKWRDLSRREFDLLETLMRHPGQILSRAQLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ +       NVV+ +I  LRKK+    G + V++ R  GY +
Sbjct: 184 MVWDMS-FDPGSNVVDVYIRALRKKI----GTEKVETIRGSGYRL 223


>gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC
           3083-94]
 gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC
           3083-94]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|315639566|ref|ZP_07894707.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484665|gb|EFU75120.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 241

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F ++G         +       +       I   L       +
Sbjct: 5   ILMIEDNESVSEMMQMFFLNEGWEATFKYDGKEGLDTFLANPHFWDLITLDLNLPSMDGM 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  S+  P+I ++   S    +   + G DD V KP     ++AR+ A++RR++
Sbjct: 65  IVAREIRKVSKTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRRME 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL-------------PRRERRILEYLMANRGKR 167
           +     +           + +                       +E  +L  L     + 
Sbjct: 125 LVEKEGKVQEASDQEFDIETQFLKVNTKTREAYLNGKLIEGLTPKEFDLLYTLAKKPRQV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 185 FSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 236


>gi|238796538|ref|ZP_04640045.1| Transcriptional regulatory protein creB [Yersinia mollaretii ATCC
           43969]
 gi|238719516|gb|EEQ11325.1| Transcriptional regulatory protein creB [Yersinia mollaretii ATCC
           43969]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 1   MIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGL--PDING 58

Query: 61  LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------ 113
            EL R  +    ++P++ ++        +   + G DD + KP   RE+ ARV       
Sbjct: 59  FELCRRLLAQMPELPVVFLTARSEELDRIVGLEMGADDYIAKPFSPREVSARVRTVLRRL 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + L V     + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 119 QKSQTLSVPAALHQFGHFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPERIFSRQQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 179 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMTYDEESPIRTHRGLGYSL 225


>gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
 gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
          Length = 249

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  +    + E  + + +     +  ++  L   GE  L 
Sbjct: 18  LVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLML--PGEDGLS 75

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113
           + R +R  ++ +P+I ++        +   + G DD + KP + RE        +  +  
Sbjct: 76  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 135

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       +     G  ++    R+     E  PL   E  +L+ L++   + +++ ++
Sbjct: 136 ELPGAPSQDDAIITFGKFKLNLGTREMFQGDENMPLTSGEFAVLKVLVSYPREPLSRDKL 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            S   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 196 MSLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 242


>gi|222110613|ref|YP_002552877.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221730057|gb|ACM32877.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D ALV  G  A     G + +   S+   +   +S + D   ++  L       +
Sbjct: 3   ILIVEDNALVASGIQAGLELHGFTSDTAGSVAQAQAHMTSRQFDACVLDLGL--PDGDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119
            L R  RA    +P++ ++   +++  +  F +G DD + KP      +L   A + R  
Sbjct: 61  SLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLRRAG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G  +V     +    G    + RRE  +L+ L+   G+ ++  Q+  ++YG
Sbjct: 121 GRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D+ V  N V  H+  LRKKL    G D +D+ R LG+ +
Sbjct: 181 L-DQDVGSNTVNVHVHHLRKKL----GADVIDTVRGLGFRL 216


>gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 235

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++        +        + E       S   D+  ++  L       +
Sbjct: 6   ILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGL--PDMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114
           E+ + IR  S +P+I +S     +  ++  D G DD + KP    E+       L R+  
Sbjct: 64  EIIKKIRTWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +      ++N    G +++    R   ++ E   L   E R++  L  N G+ +    I 
Sbjct: 124 VNGGQGENSNLFINGDLKLDYAARCVFIKDEEIHLTPIEYRLICLLAKNVGRVLTHNFIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G      +   +   ++ LRKK+  K      + +   +GY +
Sbjct: 184 KEVWGNT-LPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGYRM 229


>gi|167585551|ref|ZP_02377939.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 242

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKNGVEADTALSMQTFDLLILDLGL--PKLSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIATVRGLGYCLEK 220


>gi|149006700|ref|ZP_01830386.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147761615|gb|EDK68579.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|332072800|gb|EGI83281.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  +++     +  + G  +           L   +   +  ++  L        
Sbjct: 4   ILLIEDDQVIRQQVGKMLSEWGFEVVLVEDFMKVLSLFVQSEPHLVLMDIGLPL--FNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118
              + IR  S+VP++ +S        +   + G DD V KP   + +LA+V         
Sbjct: 62  HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++
Sbjct: 122 FGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LRKKL  +     +++K+ +GY
Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220


>gi|153954880|ref|YP_001395645.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855334|ref|YP_002472456.1| hypothetical protein CKR_1991 [Clostridium kluyveri NBRC 12016]
 gi|146347738|gb|EDK34274.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569058|dbj|BAH07042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A     G      +  +    L  +   D+  ++  L       +
Sbjct: 7   ILIVEDDKPIRNFIAAALSSQGYKYIETDKGKEAIALSMANNPDIIILDLGL--PDIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115
           E+   IR  S +P+I +S     +  ++  D G DD + KP           +  R +  
Sbjct: 65  EVISKIRELSNIPIIIVSAREKERQKVEALDKGADDYLTKPFGIGELLARIRVSLRHSIS 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   + +  +   + V  D R   V  +   L   E RI+E L    GK +    I  
Sbjct: 125 NEKENTAMHTFKVKQLFVDFDKRRVTVNDDEIHLTPIEYRIMELLCKYSGKVLTHNFITR 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G      E   +   ++ LR+KL  +    + + ++  +GY +
Sbjct: 185 EIWGTS-LGNETQSLRVFMANLRRKLEKDPSQPEYIYTEVGVGYRL 229


>gi|23013751|ref|ZP_00053613.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 238

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +IDD   ++     +    G  +    S             D+  ++  L       L
Sbjct: 7   IYVIDDEPDIRALLRQVLEGYGYQVTPLASGALARQAIRREPPDLCIVDLGL--PDMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +    +  +I ++    +   +   + G DD + KP   RE++ARV ++ RR   
Sbjct: 65  TLVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRRDQ 124

Query: 122 SNNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +     R                   G    L   E  +L  L+    + +++ Q+
Sbjct: 125 LAATSGPITTRAAFGEWIYDSGDLSLTHADGRQETLTAAEAVLLTALLRAPKRVLSREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             A     D A +   ++  IS++RKK+         + +    GY  
Sbjct: 185 QGAEPEKDDFAFD-RAIDVRISRIRKKIEADPKFPRLIKTVYGAGYLF 231


>gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D         G  +      E        +  D+  ++           
Sbjct: 3   IMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDI--QMPKLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  +   ++ ++ +      +   + G DD + KP   R++LAR+ A+ RR   
Sbjct: 61  EVCRQMRNETNSMVLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRRAGN 120

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    GPI + +   +    G    L   E R+L  L+ N G+ +    I   
Sbjct: 121 VRGVAGTSTVTVGPITLDAMRHEVTRDGVKVRLTPTESRLLHLLITNTGQVLTTDMIIER 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G +DE  +  +V++HI  LR+K+         + +   +GY+ 
Sbjct: 181 VWG-YDETGDSGLVKTHIRHLRQKVEPSPNSPRFIMTVPGVGYTF 224


>gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
 gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + +       ++G  ++  NS E    +   +   +  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115
             + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++AR         
Sbjct: 65  ANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTA 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R     + +    +   + GE   L ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 TAETERAPERLVYQSLVIDITKKKVSIDGEEVQLTKKEFEILLLLVQNKGRVFSREDILT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 RIWSN-EVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFE 227


>gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D   +++            S    D+  ++  L       +
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVML--PELDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L +  R+HS  +P++ ++   ++   +   D+G DD V KP+   E+ ARV A+ RR  
Sbjct: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +                 +     EV  L R+E  ILE L+ N  + ++++ I  +I+ 
Sbjct: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +   EE+ V+ H+  LR+KL++     D +++   +GY +
Sbjct: 180 KLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221


>gi|126173246|ref|YP_001049395.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999605|ref|YP_001365286.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874224|ref|YP_001553540.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974443|ref|YP_002359194.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410397|ref|ZP_07392015.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304489|ref|ZP_07584239.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996451|gb|ABN60526.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364223|gb|ABS07223.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859746|gb|ABX48280.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499578|gb|ACK47771.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350881|gb|EFM15281.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911891|gb|EFN42315.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266458|gb|ADT93311.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 237

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 85/223 (38%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +  +      G+ +E     +       + + D+  ++  L   G   L 
Sbjct: 11  LLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIML--PGMDGLT 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYRR 118
           L   +  +   P++ +S   S +  +   + G DD V KP+        I   +    + 
Sbjct: 69  LCEKLPDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQP 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++    G + +        +      L   E  +L  L +  G+ +++  I+  + 
Sbjct: 129 PQAESHCLTFGKLSIDPHTHAIRLNETEIDLTSHEFELLWLLASQAGQVLSRQYIYQLLL 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            + D   ++  ++  IS+LRKKL + +     + +    GY  
Sbjct: 189 NI-DFDGKDRKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLF 230


>gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRML--PEMDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117
            +   +RA     P++ IS    +   +    +G DD + KP         +  +     
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|223983041|ref|ZP_03633245.1| hypothetical protein HOLDEFILI_00525 [Holdemania filiformis DSM
           12042]
 gi|223964991|gb|EEF69299.1| hypothetical protein HOLDEFILI_00525 [Holdemania filiformis DSM
           12042]
          Length = 222

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     L    G      +     +      +  +  ++  L        
Sbjct: 4   ILIVEDEEKIRVELQNLLNRYGYEALTLDDFHEVDQQILRIQPHLVLLDINL--PEMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
            + R +R  S +P++ ++   S    L     G DD + KP + + +    +        
Sbjct: 62  MICRSLRQQSSIPILMVTSRSSDLDELMSMSLGADDFITKPYNVQILLAHIQAVLKRAYP 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   + +         + +   L + E RIL  LM  +G  V++ +I + ++ 
Sbjct: 122 QDQGRLLEVNGVTLDLSKGCVMHENQSVELTKNEIRILWLLMRKQGTIVSRDEIMTDLW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +E V++N +  +I++LR+KL +     D + +KR LGY I
Sbjct: 181 QSEEFVDDNTLTVNINRLRRKLESIGVSPDYLSTKRGLGYRI 222


>gi|89895181|ref|YP_518668.1| hypothetical protein DSY2435 [Desulfitobacterium hafniense Y51]
 gi|219669611|ref|YP_002460046.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89334629|dbj|BAE84224.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539871|gb|ACL21610.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALF--GDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +L++D   +++     F     G + +    +             D+  ++  L     
Sbjct: 4   ILLVEDDLQLQEIIEDYFTAKSAGEIEMVCAANGADGLESAQEKDYDLVLLDVML--PEV 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIY 116
               + R +R HS VP++ ++   +    L  +  G DD + KP    E+ A+       
Sbjct: 62  DGFTICRELRRHSDVPIMFLTARQAEGDRLHGYGLGCDDYMIKPFSLAELYAKANSLVRR 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  V ++    G I +        V G V  L  +E  +L+ LM N GK V +  + + 
Sbjct: 122 AKGMVRDDLMSVGGISLDPYRGTVSVDGRVVELAPKEYALLKLLMENAGKIVTRETLLAR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I+G +D +  + VV++HI KLR+ L    G + + +    GY ++ 
Sbjct: 182 IWG-YDFSGNDRVVDNHIKKLRQTLGK--GAEQIKTVVKSGYRLEE 224


>gi|219668181|ref|YP_002458616.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538441|gb|ACL20180.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G +  F D+  +     +L        +    +  ++  L       L
Sbjct: 7   ILIVEDDLALSEGIVLAFKDNNFAFVQTRNLTEARQAVRNTSIQLVILDLNL--PDGNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S VP+I ++        +   + G DD + KP     + ARV A  R    
Sbjct: 65  EFLKELRRTSAVPVIILTANDLETDVVRGLELGADDYITKPFSLMILRARVNARLRNAHP 124

Query: 122 SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S           FS  +      G    L + E+++L  L+ NRG+ + + Q+  AI+  
Sbjct: 125 SAGDTVEIEGFCFSFAKMEFAKDGVPIELSKTEQKLLRLLLENRGQTLTRAQLVDAIWTE 184

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
             E V+EN +   +++LR KL +       + +   +GY
Sbjct: 185 GAEYVDENALSVTVNRLRNKLEDLPSSPRFIKTVYGIGY 223


>gi|313681777|ref|YP_004059515.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154637|gb|ADR33315.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD + ++          G       + +      +     +  ++  L        
Sbjct: 5   ILIIDDDSAIRKLLEVALDAAGYHPVTIATGKEGLNRAAIEAPALVLLDLGL--PDMDGK 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E     R  SQ P+I +S        +   + G DD + KP    E+LAR+ A  RR  +
Sbjct: 63  EFLSQFREWSQSPVIVLSARSGEAEKIAALEGGCDDYLTKPFGTGELLARIKASLRRRGI 122

Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S     +G I              +  E   L  +E  +L+ LM N GK +    +   I
Sbjct: 123 SMGDNTSGLISGNLSLDIASHTVMLNNEELKLTPKEFDLLKILMQNSGKVLTHAWLLKEI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G+     E + +   I++LR+K+  +      + ++  +GY  
Sbjct: 183 WGIG-YQNETHYLRVFINQLRQKIETDSTRPKRIVTETGIGYRF 225


>gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo]
 gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99]
 gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99]
 gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo]
 gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99]
 gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D  ++          +G  ++  + L+       SAR D+  ++  L     + 
Sbjct: 3   IILI-EDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLML--PDGQG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|167773001|ref|ZP_02445054.1| hypothetical protein ANACOL_04389 [Anaerotruncus colihominis DSM
           17241]
 gi|167664934|gb|EDS09064.1| hypothetical protein ANACOL_04389 [Anaerotruncus colihominis DSM
           17241]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +  +  +           D+  ++  L       +
Sbjct: 3   ILIIEDDEKLCEAMRFALEMEGYIADVCHDGDDGFRWAREQAHDLILLDRML--PSTDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA     P++ ++    +   ++  D+G DD + KP    E+LARV AI RR +
Sbjct: 61  ELLKRLRAQGHTTPVLLVTALGDIGQRVEGLDAGADDYLVKPFAVEELLARVRAIRRRPR 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    + G     +  +     G    L +RE  ++E L+AN G+ + ++ + + ++
Sbjct: 121 QWESARVLQVGDAAFDAAQKTLTGPGGCCSLSKREAELMEILLANHGQTLPRSMLLTRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  VE+  ++++I  LR++L+       + + R +GY ++
Sbjct: 181 G-PDAEVEDGNLDNYIHFLRRRLKAAGSAVSIRTVRGVGYQLE 222


>gi|254247310|ref|ZP_04940631.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872086|gb|EAY63802.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 300

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 60  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGL--PKMSGL 117

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 118 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 177

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 178 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 237

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++  LRKK+        + + R LGY ++ 
Sbjct: 238 WG---EEVSNNAIEVYVHGLRKKIEPSG--VRISTVRGLGYCLEK 277


>gi|187927570|ref|YP_001898057.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187724460|gb|ACD25625.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 236

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++ +D A + DG        G +++  +     +     Q++   D+  ++  L     
Sbjct: 3   ILIAEDDATLADGLTRSLRQAGYAVDQASDGATADAALSAQTAQTYDLLILDVGL--PRM 60

Query: 59  KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IY 116
             LE+ + +R+   + P++ ++   S++  +   D G DD + KP    E+ ARV A + 
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R           GP+     GR   +  +V  L  RE  +LE L+A  G+ V+K Q+   
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + G + E V  N +E +I +LRKK+  +     + + R LGY ++
Sbjct: 181 LCG-WGEEVSNNAIEVYIHRLRKKIEVEGI--RIATVRGLGYCLE 222


>gi|21243582|ref|NP_643164.1| DNA-binding response regulator CreB [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109151|gb|AAM37700.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D  +     +G + E             +   DV  ++  L        E
Sbjct: 9   LVVEDEAAIADTVLYALRSEGYAPEHCLLGRDALTRLRADPADVVVLDVGL--PDINGFE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 67  VCRTLRGFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRHAG 126

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G   +  +G        + PL R E  +L  L+   G  +++ Q+    +
Sbjct: 127 AAAELGWQPHGAFAIDREGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRAQLMDRGW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
               ++ +   V++HI  LR KLR      DP+ + R LGY+++ 
Sbjct: 187 DASADSAD-RTVDTHIKTLRGKLRLAGVPVDPIRTHRGLGYALEV 230


>gi|148259593|ref|YP_001233720.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402799|ref|YP_004282880.1| transcriptional regulatory protein OmpR [Acidiphilium multivorum
           AIU301]
 gi|146401274|gb|ABQ29801.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049660|dbj|BAJ79998.1| transcriptional regulatory protein OmpR [Acidiphilium multivorum
           AIU301]
          Length = 240

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G      +S              +  ++  L   GE  L
Sbjct: 6   ILIVDDDPQIRTMLRRYLAGEGYGTREADSEAGTHAALLGGDVTLVLLDLMLG--GEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA S VP+I ++    +   +   ++G DD + KP H RE+LAR+ A+ RR+  
Sbjct: 64  ALARAIRARSDVPIIMLTGKDDVIDRVAGLEAGADDYIAKPFHLREVLARIRALKRRMTG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------------FPLPRRERRILEYLMANRGKRVA 169
                   P    +  R      +              PL   E  +L   + + G+ + 
Sbjct: 124 RGTPEPAEPDPPEAVIRFDGHALDPLGRTLRGRDGADIPLTTAEFELLAVFLRHAGRVLD 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+ + + G  D    + +V++ + +LR+K+  +      + + R  GY  
Sbjct: 184 RDQLLNLLKGR-DFEAFDRLVDTQVMRLRRKIEQDPGQPQLIKTVRGAGYVF 234


>gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F   +       SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLNKMGFTLDWFTDGQLGMTALESAPYDAVILDLSL--PGIDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A I R   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSH----FIRTVHGVGYTL 216


>gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
 gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A + R  
Sbjct: 61  DILREWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|206968995|ref|ZP_03229950.1| two-component response regulator [Bacillus cereus AH1134]
 gi|206736036|gb|EDZ53194.1| two-component response regulator [Bacillus cereus AH1134]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G         +    +    +  +  ++  L        
Sbjct: 4   LLIVEDEINIADTLKEHLEKYGYHCLIVEDFQKVLEIFQDFQPHLVIMDVTLPA--FDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115
              R IR  S  P++ +S   S    +   ++G DD + KP     +        R    
Sbjct: 62  YWSRKIRQISNCPIVILSARMSETDQVYGIENGADDFITKPFLLGVVLAKINGQIRRIYG 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V     + G   +  D        +   L  +E ++      +    V + Q+ +
Sbjct: 122 EYARNVQEKIFKIGNTILNLDTVRLCAPNQEELLTIKEFQLCTMFFESYPNVVTRQQLLT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           AI+   +E VEEN +  +I++LRKKL        + + R +GY +
Sbjct: 182 AIWDE-EEFVEENTLTVNIARLRKKLEAIHSTLEIRTIRGIGYQL 225


>gi|153811081|ref|ZP_01963749.1| hypothetical protein RUMOBE_01472 [Ruminococcus obeum ATCC 29174]
 gi|149832969|gb|EDM88052.1| hypothetical protein RUMOBE_01472 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G  +    S++  + + S    DV+  +  L       L
Sbjct: 4   ILVVEDDENLNRGITFSLKKSGYEVFSAESMKKAKRIASDNNVDVTICDVNL--PDGNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119
           E  R +R +    +I ++        +  +++G DD + KP     +          R+ 
Sbjct: 62  EFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++ 
Sbjct: 122 KTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           L  + V+EN +  +I +LR+K+ +       + + R LGY  +
Sbjct: 182 LEGDFVDENTIAVNIRRLREKIEDNPAAPVYIKNIRGLGYIWN 224


>gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
 gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +             ++    +      +  + + D++ ++  L       +
Sbjct: 3   ILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGL--PDMDGI 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ +    +  ++ ++ ++     +  +   DSG DD + KP    E+LAR+     R  
Sbjct: 61  EVLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + + +      + G+   L RRE  +L  LM N G+   ++ + + +Y 
Sbjct: 121 SAKTSLVAVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E HI  LRKKL    G D + + R +GY ++
Sbjct: 181 -WGEEVSSNALEVHIHNLRKKL----GSDFIKTVRGVGYRVN 217


>gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG        G   E   +LE       + R +   ++  L       L
Sbjct: 3   ILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLML--PDGSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           EL   +RA  +  P++ ++    L   +   D G DD + KP    E+ AR+ A   R  
Sbjct: 61  ELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   +YG
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E H+ KLR KL    G   +++ R +GY +
Sbjct: 181 -WQEEIESNAIEVHVHKLRAKL----GHGFIETVRGVGYRL 216


>gi|123443580|ref|YP_001007553.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090541|emb|CAL13410.1| putative response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGL--PDING 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------ 113
            +L R I A   ++P++ ++        +   + G DD + KP   RE+ ARV       
Sbjct: 62  FDLCRRILAQVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRRL 121

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + L  S    + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSQSLATSATLHQFGNFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPDRVFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMTYDEESPIRTHRGLGYSL 228


>gi|172061615|ref|YP_001809267.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994132|gb|ACB65051.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 242

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGL--PKMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           ++ + +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A   R  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G   E V  N +E ++ +LRKK+        + + R LGY ++ 
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLEK 220


>gi|15807318|ref|NP_296048.1| response regulator [Deinococcus radiodurans R1]
 gi|6460139|gb|AAF11874.1|AE002064_5 response regulator [Deinococcus radiodurans R1]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 85/222 (38%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G ++    +              +  ++  L   G    
Sbjct: 3   LLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVML--PGLDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++    +   +   D G D  + KP    E+LA++ A+ RR +
Sbjct: 61  EIAGQLREAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRER 120

Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    +         +  R     G+   +  RE  +L  L     + + + ++   +
Sbjct: 121 GQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G  +   E  +V+ ++  LR+KL      + + S+R  GY 
Sbjct: 181 WG-PEFGGEARIVDVYVRYLRRKL----APEAISSERGRGYR 217


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.135    0.410 

Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,804,172,539
Number of Sequences: 14124377
Number of extensions: 77673852
Number of successful extensions: 595708
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 64570
Number of HSP's successfully gapped in prelim test: 16912
Number of HSP's that attempted gapping in prelim test: 381232
Number of HSP's gapped (non-prelim): 91304
length of query: 223
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 89
effective length of database: 2,950,127,112
effective search space: 262561312968
effective search space used: 262561312968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 78 (34.6 bits)